Citrus Sinensis ID: 012360
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 465 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LSB8 | 687 | Putative pentatricopeptid | yes | no | 0.995 | 0.673 | 0.368 | 3e-90 | |
| Q9SJZ3 | 681 | Pentatricopeptide repeat- | no | no | 0.991 | 0.676 | 0.359 | 2e-87 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.991 | 0.624 | 0.360 | 5e-87 | |
| Q9C866 | 570 | Pentatricopeptide repeat- | no | no | 0.987 | 0.805 | 0.378 | 4e-86 | |
| Q9SMZ2 | 990 | Pentatricopeptide repeat- | no | no | 0.926 | 0.435 | 0.364 | 3e-82 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.997 | 0.665 | 0.352 | 1e-81 | |
| Q9SX45 | 596 | Pentatricopeptide repeat- | no | no | 0.918 | 0.716 | 0.339 | 1e-80 | |
| O23337 | 722 | Pentatricopeptide repeat- | no | no | 0.987 | 0.635 | 0.352 | 5e-79 | |
| O49399 | 545 | Pentatricopeptide repeat- | no | no | 0.948 | 0.809 | 0.339 | 4e-78 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.995 | 0.589 | 0.329 | 1e-77 |
| >sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2 | Back alignment and function desciption |
|---|
Score = 332 bits (852), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 171/464 (36%), Positives = 277/464 (59%), Gaps = 1/464 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LH HV K L S++YV N+L+ Y L AR +FD+ DV SWN ++S YN
Sbjct: 154 GKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNR 213
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E + L ++ + +TL+++ SAC++++ K VH Y ++ E L +
Sbjct: 214 MKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRL 273
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
ENAL+ YA C EMD A+R+F M +R +++S ++ GY++ + LAR FD++ +D
Sbjct: 274 ENALVNAYAACGEMDIAVRIFRSMKAR-DVISWTSIVKGYVERGNLKLARTYFDQMPVRD 332
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ W M+ G ++A E+LE+F++M G+ PDE MVSVL+AC+ L +L+ G +
Sbjct: 333 RISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKT 392
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I +N I D V ALIDMY KCG E+A F+ D +D TWT M+ GLAN G G E
Sbjct: 393 YIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQE 452
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A++VF+QM+ I+P++ T++ VL+AC HSG++ + + F +M +R++P++ H+ C+V
Sbjct: 453 AIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMV 512
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+L RAGL+ +A E ++ MP I + ALL A +++ + + A +++L +
Sbjct: 513 DMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGA 572
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
Y LL N YA W ++ E RR + ++ +K PG S+I++ +
Sbjct: 573 VYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGF 616
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 323 bits (827), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 166/462 (35%), Positives = 273/462 (59%), Gaps = 1/462 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G + HV K L+ +V N+ IH + +AR +FD+ P RD+ SWN L++ Y
Sbjct: 174 LGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYK 233
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
++ + + ++K + EG+ D +T++ L S+C+ L L+ GK + Y + GL +
Sbjct: 234 KIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIP 293
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ M++KC ++ EA R+FD + +R IVS +I+GY L+D++R++FD++ +K
Sbjct: 294 LVNALMDMFSKCGDIHEARRIFDNL-EKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEK 352
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+VLW +M+ G V+AK+ ++AL LF++M PDE M+ LSACS L L G +H
Sbjct: 353 DVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIH 412
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
R+I + +++ + + T+L+DMY+KCG++ EAL F+ ++ +T+T +I GLA +G +
Sbjct: 413 RYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDAS 472
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A+ F +M GI P+E TF+ +L+AC H G+I G F +M + + P ++H+ +
Sbjct: 473 TAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIM 532
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAGLL +A+ ++ MP E + ALL C + +LG+K A +++L
Sbjct: 533 VDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDS 592
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLL Y W + ARR M E K PG S I++
Sbjct: 593 GIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEV 634
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 322 bits (824), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 167/463 (36%), Positives = 273/463 (58%), Gaps = 2/463 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH K+A+ SD++V NSLIH Y A +F + +DV SWN++++ +
Sbjct: 149 LGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFV 208
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L LFK++ E + A +T+V + SACA++ L +G+ V Y + + L
Sbjct: 209 QKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLT 268
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NA+L MY KC +++A RLFD M + N V+ +++GY E + AREV + + K
Sbjct: 269 LANAMLDMYTKCGSIEDAKRLFDAMEEKDN-VTWTTMLDGYAISEDYEAAREVLNSMPQK 327
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
DIV W +++ + +P EAL +F ++ + + + ++ +VS LSAC+ + L+ GR +
Sbjct: 328 DIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWI 387
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +I ++ I + V +ALI MYSKCG LE++ F + +DV W+ MI GLA +G G
Sbjct: 388 HSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCG 447
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
NEA+ +FY+M+ +KPN TF +V AC H+GL+ E LF +M Y + P +H+ C
Sbjct: 448 NEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYAC 507
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VD+L R+G L +A +FI+ MP + ALL AC ++ +L + +++L ++
Sbjct: 508 IVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRN 567
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
A+VLLSN YA G W V+E R++M+ +K+PG S I++
Sbjct: 568 DGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEI 610
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 319 bits (817), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 176/465 (37%), Positives = 267/465 (57%), Gaps = 6/465 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + K L+ D YV NSL+ Y + +FD+MP RDV SWN L+S Y
Sbjct: 65 GEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVG 124
Query: 62 FSDSGEVLILFKQLIFEGIVA-DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + +FK++ E + D+ T+V SAC+ L+ L G+ ++ + E +
Sbjct: 125 NGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVV-TEFEMSVR 183
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ M+ KC +D+A +FD M +N+ ++ GY+ +D AR +F+ K
Sbjct: 184 IGNALVDMFCKCGCLDKARAVFDSM-RDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVK 242
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+VLW +MM+G V+ + +EALELF+ M G+ PD V+VS+L+ C+ L+ G+ +H
Sbjct: 243 DVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIH 302
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I +N +T D V TAL+DMY+KCG +E AL FY+ +D +WT++I GLA G+
Sbjct: 303 GYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSG 362
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL ++Y+ME G++ + TFV+VL AC H G + EG ++F M + VQP EH CL
Sbjct: 363 RALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCL 422
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDK---FISYKALLSACITYSEFDLGKKVANNMMKLGN 417
+DLL RAGLL +AEE I M E Y +LLSA Y + ++VA + K+
Sbjct: 423 IDLLCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEV 482
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
A+ LL++ YA W +V RR MK+L RK PG S I++
Sbjct: 483 SDSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEI 527
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 306 bits (783), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 169/464 (36%), Positives = 249/464 (53%), Gaps = 33/464 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+ K +H H K SD +V +LI Y R +A +LF++ F D+ +WN +M+ Y
Sbjct: 435 LSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF-DLVAWNAMMAGYT 493
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
D + L LF + +G +D TL +F C L ++ GK VH YA K G + L
Sbjct: 494 QSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLW 553
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ + +L MY KC +M A + FD I
Sbjct: 554 VSSGILDMYVKCGDMSAA--------------------------------QFAFDSIPVP 581
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D V W +M+ GC++ + E A +F +M GV PDE + ++ A S L+ L+ GR +H
Sbjct: 582 DDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIH 641
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
L+ N T D FV T+L+DMY+KCGS+++A F + + ++ W M+ GLA +G G
Sbjct: 642 ANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGK 701
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
E L++F QM+ GIKP++ TF+ VL+AC HSGL++E + R M G Y ++P IEH+ CL
Sbjct: 702 ETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCL 761
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
D L RAGL+ QAE I+ M E Y+ LL+AC + + GK+VA +++L
Sbjct: 762 ADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDS 821
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
AYVLLSN YA W E+ AR MK + +K PG S I++K+
Sbjct: 822 SAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKN 865
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 304 bits (778), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 167/474 (35%), Positives = 262/474 (55%), Gaps = 10/474 (2%)
Query: 1 MGKGLHAH--VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSI 58
M KG+ H + K+ SD+Y+G++L+ Y + DA+ +FD+M R+V SWN+L++
Sbjct: 168 MNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITC 227
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEY 117
+ + E L +F+ ++ + D++TL + SACA L + G+ VH K L
Sbjct: 228 FEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRN 287
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ + NA + MYAKC + EA +FD M RN+++ +I+GY AR +F ++
Sbjct: 288 DIILSNAFVDMYAKCSRIKEARFIFDSM-PIRNVIAETSMISGYAMAASTKAARLMFTKM 346
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
++++V W +++ G + + EEAL LF + E V P ++L AC+ L+ L G
Sbjct: 347 AERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGM 406
Query: 238 ------LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
L H F Q+ D FV +LIDMY KCG +EE + F K +D V+W MI
Sbjct: 407 QAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMII 466
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ 351
G A G GNEAL +F +M G KP+ T + VL+AC H+G + EG F M + V
Sbjct: 467 GFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVA 526
Query: 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANN 411
P +H+ C+VDLL RAG L +A+ I+ MP + + + +LL+AC + LGK VA
Sbjct: 527 PLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEK 586
Query: 412 MMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
++++ + YVLLSN YA G W +V R++M++ K+PG S I ++ +
Sbjct: 587 LLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGH 640
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 300 bits (768), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 156/460 (33%), Positives = 260/460 (56%), Gaps = 33/460 (7%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64
HAH+ K LDSD +V NSLI Y LF A LFD +DV +W ++ +
Sbjct: 125 FHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGS 184
Query: 65 SGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEYMLNMEN 123
+ E ++ F ++ G+ A+++T+V + A ++E + +G++VH + G ++ + + +
Sbjct: 185 ASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGS 244
Query: 124 ALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIV 183
+L+ MY KC D+A ++VFDE+ +++V
Sbjct: 245 SLVDMYGKCSCYDDA--------------------------------QKVFDEMPSRNVV 272
Query: 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243
W +++ G V+++ ++ + +F++M+ V P+E+ + SVLSAC+ + L GR VH ++
Sbjct: 273 TWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYM 332
Query: 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEAL 303
++N+I + T LID+Y KCG LEEA++ F + K+V TWT MI G A +G +A
Sbjct: 333 IKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAF 392
Query: 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363
+FY M + PNE TF++VL+AC H GL+ EG +LF M G + ++P +H+ C+VDL
Sbjct: 393 DLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDL 452
Query: 364 LSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423
R GLL +A+ I+ MP E + + AL +C+ + +++LGK A+ ++KL Y
Sbjct: 453 FGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRY 512
Query: 424 VLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
LL+N Y+ +W EVA R+ MK+ Q K PG S I++K
Sbjct: 513 TLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVK 552
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 295 bits (755), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 162/460 (35%), Positives = 254/460 (55%), Gaps = 1/460 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G LH K A D +V + Y AR +FD+M RDV +WNT++ Y
Sbjct: 130 GMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCR 189
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
F E LF+++ ++ D++ L + SAC R + Y + ++ + + + ++
Sbjct: 190 FGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHL 249
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ MYA MD A F +M S RN+ +++GY +D A+ +FD+ KD
Sbjct: 250 LTALVTMYAGAGCMDMAREFFRKM-SVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKD 308
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +M+ V++ P+EAL +F++M G+ PD M SV+SAC++L L + VH
Sbjct: 309 LVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHS 368
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I N + + + ALI+MY+KCG L+ F K ++VV+W++MI L+ +G ++
Sbjct: 369 CIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASD 428
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F +M+++ ++PNE TFV VL C HSGL+ EG ++F M Y + P +EH+ C+V
Sbjct: 429 ALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMV 488
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DL RA LL +A E I+ MP + + +L+SAC + E +LGK A +++L
Sbjct: 489 DLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDG 548
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
A VL+SN YA E W +V RR M+E K+ G S ID
Sbjct: 549 ALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRID 588
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 292 bits (747), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 162/477 (33%), Positives = 258/477 (54%), Gaps = 36/477 (7%)
Query: 6 HAHVTKTALDSDIYVGNSLIHFYG---RMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
HA + KT L D + + L+ F + A + +++ + + N+++ Y +
Sbjct: 59 HAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVIRAYANS 118
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
S L +F++++ + DK + + ACA G+ +H K GL + +E
Sbjct: 119 STPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVE 178
Query: 123 NALLLMYAKCKE-------------------------------MDEALRLFDEMGSRRNI 151
N L+ +Y + +DEA LFDEM RN+
Sbjct: 179 NTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEM-EERNV 237
Query: 152 VSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE 211
S N +I+GY LV A+EVFD + +D+V W +M+ E LE+F KM+D+
Sbjct: 238 ESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDD 297
Query: 212 GV-TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270
PD +VSVLSAC+SL +L G VH +I ++ I + F+ TAL+DMYSKCG +++
Sbjct: 298 STEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDK 357
Query: 271 ALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH 330
AL F T +DV TW ++I L+ +GLG +AL +F +M +G KPN TF+ VL+AC H
Sbjct: 358 ALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNH 417
Query: 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390
G++ + +LF M VYRV+PTIEH+ C+VDLL R G + +AEE + +PA++ I +
Sbjct: 418 VGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNEIPADEASILLE 477
Query: 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447
+LL AC + + + +++AN +++L + Y +SN YA +G W +V + RRNM+
Sbjct: 478 SLLGACKRFGQLEQAERIANRLLELNLRDSSGYAQMSNLYASDGRWEKVIDGRRNMR 534
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (744), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 164/497 (32%), Positives = 279/497 (56%), Gaps = 34/497 (6%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY-- 59
GK +H+ + K L ++ V NSL++ Y + A+ +FD+M RD+ SWN +++++
Sbjct: 165 GKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQ 224
Query: 60 --------------------------NDFSDSG---EVLILFKQLIFEGIVA-DKITLVI 89
+ F+ G L +F +++ + +++ D+ TL
Sbjct: 225 VGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLAS 284
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
+ SACA LEKL GK +H + G + + NAL+ MY++C ++ A RL ++ G++
Sbjct: 285 VLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKD 344
Query: 150 -NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208
I L++GYI + ++ A+ +F + D+D+V W +M+ G + EA+ LF+ M
Sbjct: 345 LKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSM 404
Query: 209 IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268
+ G P+ + ++LS SSL++L +G+ +H +++ V ALI MY+K G++
Sbjct: 405 VGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNI 464
Query: 269 EEALVTFYKTDC-KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327
A F C +D V+WT+MI LA +G EAL +F M +G++P+ T+V V +A
Sbjct: 465 TSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSA 524
Query: 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFI 387
C H+GL+ +G Q F M V ++ PT+ H+ C+VDL RAGLL +A+EFI+ MP E +
Sbjct: 525 CTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVV 584
Query: 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447
++ +LLSAC + DLGK A ++ L ++ AY L+N Y+ G W E A+ R++MK
Sbjct: 585 TWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMK 644
Query: 448 ELQTRKKPGNSIIDLKH 464
+ + +K+ G S I++KH
Sbjct: 645 DGRVKKEQGFSWIEVKH 661
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 465 | ||||||
| 225444117 | 553 | PREDICTED: pentatricopeptide repeat-cont | 0.989 | 0.831 | 0.601 | 1e-167 | |
| 224056823 | 601 | predicted protein [Populus trichocarpa] | 0.989 | 0.765 | 0.611 | 1e-162 | |
| 255564351 | 569 | pentatricopeptide repeat-containing prot | 0.984 | 0.804 | 0.601 | 1e-156 | |
| 255576950 | 683 | pentatricopeptide repeat-containing prot | 0.976 | 0.664 | 0.400 | 9e-95 | |
| 449436619 | 723 | PREDICTED: putative pentatricopeptide re | 0.989 | 0.636 | 0.392 | 4e-92 | |
| 449457225 | 781 | PREDICTED: pentatricopeptide repeat-cont | 0.987 | 0.587 | 0.395 | 5e-92 | |
| 449491161 | 744 | PREDICTED: LOW QUALITY PROTEIN: putative | 0.989 | 0.618 | 0.392 | 5e-92 | |
| 449521645 | 735 | PREDICTED: pentatricopeptide repeat-cont | 0.987 | 0.624 | 0.393 | 5e-92 | |
| 359478743 | 642 | PREDICTED: pentatricopeptide repeat-cont | 0.993 | 0.719 | 0.375 | 7e-92 | |
| 225442904 | 724 | PREDICTED: putative pentatricopeptide re | 0.989 | 0.635 | 0.379 | 3e-91 |
| >gi|225444117|ref|XP_002266487.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust.
Identities = 278/462 (60%), Positives = 357/462 (77%), Gaps = 2/462 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +HAHVTKT LDSD+YVGN+L+H YG TDAR LFD MP RD+ SWNTL+ YND
Sbjct: 93 GKEVHAHVTKTGLDSDVYVGNALLHLYGSTGQVTDARRLFDGMPHRDLASWNTLLGAYND 152
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
++ EVL+LFK++++EGI D I++VI+FSAC ++ +GK VH Y KVG+ L++
Sbjct: 153 --NAVEVLVLFKRMMYEGIGGDHISMVIVFSACGKIGGTEFGKEVHGYVIKVGIRPALSL 210
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NALL +Y KC EMD A LF EM + R++VS IL NGY+DM +DLAR +FD++ KD
Sbjct: 211 SNALLGVYTKCGEMDAAQSLFVEMAAMRDVVSHTILFNGYVDMGSIDLARGIFDQMSVKD 270
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W SM+H VKAK P++A+ELF+KM +E V PDE MVSVL+AC+SL++LQ GRL HR
Sbjct: 271 LVSWNSMIHAYVKAKHPKKAIELFRKMENEMVEPDETTMVSVLAACASLADLQNGRLAHR 330
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
FI+QNN QD FV TALIDMY+KCGSLEEA+VTFYK D +DV TWTT IEGLAN+G G++
Sbjct: 331 FIIQNNPRQDLFVGTALIDMYAKCGSLEEAMVTFYKMDSRDVFTWTTAIEGLANHGHGDK 390
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F +ME++GIKPN+ATFVSVL AC SGL+ EGC LF+RM Y++QP IEH CL+
Sbjct: 391 ALSLFTEMEKQGIKPNQATFVSVLMACSRSGLVKEGCLLFKRMVEAYQIQPKIEHLGCLL 450
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+LSRAGLL+QAEEFIK+MP ++K I+ K LLSAC+ + E+DLG+K+AN + +L +QSH
Sbjct: 451 DILSRAGLLHQAEEFIKLMPPKEKIIANKTLLSACMNHLEYDLGEKIANGLTELSSQSHA 510
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
++LLSNFYAL G W EVA+ RR MKE+ RK PG S +D+K
Sbjct: 511 THILLSNFYALAGQWAEVAKTRRVMKEIDIRKVPGISSVDIK 552
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224056823|ref|XP_002299041.1| predicted protein [Populus trichocarpa] gi|222846299|gb|EEE83846.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 283/463 (61%), Positives = 351/463 (75%), Gaps = 3/463 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK +H HV KT LDSDIYV N+L+HFYG + TDA LFD+MP RDV SWN+LM IYN
Sbjct: 95 GKQVHTHVIKTGLDSDIYVQNALVHFYGSVGNSTDACFLFDRMPDRDVASWNSLMGIYNT 154
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACAR--LEKLHYGKTVHCYATKVGLEYML 119
+ EV++LFK+L+ + ADKI+LVI+ SACA+ +E L YG++VH Y KVG L
Sbjct: 155 NNSFTEVMVLFKKLMCGCVKADKISLVIVLSACAQAQMEGLEYGRSVHGYVIKVGFGCFL 214
Query: 120 NMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD 179
N++NALL Y KCKE+D+A ++FDE ++VS ILIN Y++M L+DLAR+VFDEIVD
Sbjct: 215 NVDNALLNFYIKCKEIDDASKMFDEFVHEGDVVSYTILINAYVEMGLIDLARDVFDEIVD 274
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
KD VLW M+H VKA+ P EAL+LF+KM GV PDE MVSVL AC+S+S+LQ RL+
Sbjct: 275 KDRVLWNLMVHAYVKARCPNEALDLFEKMDSAGVIPDENTMVSVLLACASISDLQCARLL 334
Query: 240 HRFILQN-NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL 298
HRFI +N N+ QD F+KTALI MYSKCGS+EEALVTFYK + DV TWT MIEGLAN G
Sbjct: 335 HRFINRNSNVRQDVFLKTALITMYSKCGSVEEALVTFYKMEYTDVFTWTAMIEGLANNGY 394
Query: 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358
GNEAL +F +ME +GI+PNE+T VSVL AC HSGL+ EGCQLF+ M Y++Q +EHF
Sbjct: 395 GNEALSMFNRMENQGIRPNESTLVSVLTACIHSGLVKEGCQLFKSMVSDYKMQLKMEHFG 454
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418
CL+DLLSRAGLL+QAEEFI+++ E++ I+YK LLSAC+ YSEFD GKKVAN M KL +
Sbjct: 455 CLIDLLSRAGLLHQAEEFIQLLLPEERLIAYKTLLSACMKYSEFDFGKKVANEMSKLSSN 514
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
SHE +LLSNFYAL G W +VAE R+ +KE TRK PG S +D
Sbjct: 515 SHETRILLSNFYALAGQWAQVAETRKFIKEFDTRKAPGMSFVD 557
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255564351|ref|XP_002523172.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223537579|gb|EEF39203.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 278/462 (60%), Positives = 348/462 (75%), Gaps = 4/462 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG+ +H H+ K LDSDIYV N+L+HFYG + AR+LFDKM RD+ SWNT M
Sbjct: 102 MGQLVHTHLIKIGLDSDIYVQNALLHFYGSIKQLNYARLLFDKMYERDITSWNTFMGASY 161
Query: 61 DFSDSG-EVLILFKQLIFEGIVADKITLVILFSACARL---EKLHYGKTVHCYATKVGLE 116
S+S +++ LFK+LI EG+ ADKITLVILFSA A+ E L YG VH A K+GL
Sbjct: 162 ASSNSVIDLMDLFKRLISEGVGADKITLVILFSAFAQAQCDESLEYGTAVHSCAIKMGLV 221
Query: 117 YMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176
MLN+ NALL MY K ++MD A R+FDEMGS+++ VS ILINGY++ L+DLA ++F +
Sbjct: 222 SMLNVSNALLNMYTKYRQMDAASRVFDEMGSKKDAVSHAILINGYVEKGLIDLASDIFYQ 281
Query: 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG 236
I DKD+VLW M+HG +KAK+P +ALELFKKM +EG+ PDE MV +L+AC+SLS+LQYG
Sbjct: 282 IFDKDLVLWNVMLHGYIKAKRPIDALELFKKMDNEGLIPDENTMVGILAACASLSDLQYG 341
Query: 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY 296
R+VH FI +N+I QD FVKTALIDMY KCGS EEALVTFYK + KDV TWT +IEGLAN
Sbjct: 342 RVVHMFINRNDIKQDIFVKTALIDMYFKCGSPEEALVTFYKMEYKDVFTWTAVIEGLANN 401
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356
G GN AL +F QME +GI+PNEATFVS L +CRHSGL+ EGCQ+FR+M VY++QP EH
Sbjct: 402 GYGNVALNLFKQMEEQGIQPNEATFVSALTSCRHSGLVKEGCQMFRKMVEVYKLQPRFEH 461
Query: 357 FVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416
F CL+D+LSRAGLL QA EF+K++ E++ +YK +LSACI Y EFD+G+K A M +L
Sbjct: 462 FGCLIDVLSRAGLLAQAYEFVKLLRPEERLAAYKIVLSACIKYLEFDVGEKAALEMAELS 521
Query: 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNS 458
QS E ++LLSNFYAL G W VA+ RR MK L TRK+PG S
Sbjct: 522 PQSCEMHILLSNFYALAGQWERVAKTRRTMKRLNTRKEPGIS 563
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 353 bits (906), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 186/464 (40%), Positives = 292/464 (62%), Gaps = 10/464 (2%)
Query: 5 LHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIY---ND 61
L VTKT L+ D YV NSLI Y ++AL ++LFD+MP RDV SWN ++S Y
Sbjct: 159 LRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRR 218
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
F D+ V ++ G++ D+ T+V SAC L++L GK +H Y + +++ +
Sbjct: 219 FEDAINVFCRMQEE--SGLMPDEATVVSTLSACTALKRLELGKKIHHY-VRDNVKFTPII 275
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NALL MY KC + A +F+EM S+ N++ +++GY + ++ ARE+F+ +D
Sbjct: 276 GNALLDMYCKCGCLSIARAVFEEMPSK-NVICWTTMVSGYANCGELEEARELFEGSPIRD 334
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V+W +M++G V+ + +EA+ LF++M V PD+ ++VS+L+ C+ ++ G+ +H
Sbjct: 335 VVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHE 394
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
FI +N I DA V TALI+MY+KCG +E+AL FY KD +WT++I GLA G ++
Sbjct: 395 FIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSK 454
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F +M++ G++P++ TF+ VL+AC H GL+ EG + F M Y+++P +EH+ CLV
Sbjct: 455 ALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHYGCLV 514
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFIS---YKALLSACITYSEFDLGKKVANNMMKLGNQ 418
DLL RAGLL +AEE IK +P E+K I+ Y +LLSAC Y ++G++VA ++K +
Sbjct: 515 DLLGRAGLLNEAEELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGERVAKQLVKFESS 574
Query: 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ LL+N YA W +V + RR MK+L +K PG S I++
Sbjct: 575 DSSVHTLLANIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSIEV 618
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 181/461 (39%), Positives = 275/461 (59%), Gaps = 1/461 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH HV K L +++V +L+ Y AR +FD P DV +WN ++S YN
Sbjct: 137 GRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNK 196
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E LF + + ++ +TLV++ SAC++L+ L GK VH Y +E L +
Sbjct: 197 VGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVL 256
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
ENA++ MYA C EMD AL +F M +R +I+S +++G+ ++ +D+AR FD++ +KD
Sbjct: 257 ENAMIDMYADCGEMDSALGIFRSMNNR-DIISWTTIVSGFTNLGEIDVARNYFDKMPEKD 315
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +M+ G +++ + +EALELF+ M V PDE MVSVL+AC+ L L+ G +
Sbjct: 316 YVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRT 375
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I +N I D FV+ ALIDMY KCG +++A F + +D TWT MI GLA G G +
Sbjct: 376 YIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEK 435
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F M + I P+E T++ VL+AC H+GL+ +G + F RM + ++P I H+ CLV
Sbjct: 436 ALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLV 495
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL+RAG L +A E I+ MP + I + ALL+ C Y E D+ + V +++L +
Sbjct: 496 DLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGA 555
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLL N YA W ++ E R+ M + +K PG S+I++
Sbjct: 556 VYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEM 596
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31430-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 184/465 (39%), Positives = 291/465 (62%), Gaps = 6/465 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ + + KT +D D YV NSLI Y ++ +A+ LFD+M RD SWN ++S Y
Sbjct: 262 GEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVR 321
Query: 62 FSDSGEVLILFKQLIFEGI-VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + F+++ EG D+ T+V SAC L+ L G +H Y K L +
Sbjct: 322 CRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRK-ELGFTTR 380
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++NALL MYAKC ++ A +FDEM S +N++ +I+GYI+ + AR++FD+ +
Sbjct: 381 IDNALLDMYAKCGCLNIARNIFDEM-SMKNVICWTSMISGYINCGDLREARDLFDKSPVR 439
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+VLW +M++G V+ ++A+ LF++M + V PD+ +V++L+ C+ L L+ G+ +H
Sbjct: 440 DVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIH 499
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++ +N IT D V TALI+MYSKCG ++++L FY+ + KD +WT++I GLA G +
Sbjct: 500 GYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTS 559
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EALR+F +MER G KP++ TF+ VL+AC H GL+ EG + F M V+R++P +EH+ C+
Sbjct: 560 EALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCV 619
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFIS---YKALLSACITYSEFDLGKKVANNMMKLGN 417
+DLL RAGLL +AEE I+ +P E+ I Y ALLSAC ++ D+G+++A + + +
Sbjct: 620 IDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIES 679
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ LL+N YA W + + RR MKEL +K PG S+I++
Sbjct: 680 CDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEV 724
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g15930-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 181/461 (39%), Positives = 275/461 (59%), Gaps = 1/461 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH HV K L +++V +L+ Y AR +FD P DV +WN ++S YN
Sbjct: 158 GRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNK 217
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E LF + + ++ +TLV++ SAC++L+ L GK VH Y +E L +
Sbjct: 218 VGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVL 277
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
ENA++ MYA C EMD AL +F M +R +I+S +++G+ ++ +D+AR FD++ +KD
Sbjct: 278 ENAMIDMYADCGEMDSALGIFRSMNNR-DIISWTTIVSGFTNLGEIDVARNYFDKMPEKD 336
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +M+ G +++ + +EALELF+ M V PDE MVSVL+AC+ L L+ G +
Sbjct: 337 YVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRT 396
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I +N I D FV+ ALIDMY KCG +++A F + +D TWT MI GLA G G +
Sbjct: 397 YIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEK 456
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F M + I P+E T++ VL+AC H+GL+ +G + F RM + ++P I H+ CLV
Sbjct: 457 ALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLV 516
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL+RAG L +A E I+ MP + I + ALL+ C Y E D+ + V +++L +
Sbjct: 517 DLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGA 576
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLL N YA W ++ E R+ M + +K PG S+I++
Sbjct: 577 VYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEM 617
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31430-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 183/465 (39%), Positives = 291/465 (62%), Gaps = 6/465 (1%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ + + KT +D D YV NSLI Y ++ +A+ LFD+M RD SWN ++S Y
Sbjct: 216 GEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVR 275
Query: 62 FSDSGEVLILFKQLIFEGI-VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + F+++ EG D+ T+V SAC L+ L G +H Y K L +
Sbjct: 276 CRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRK-ELGFTTR 334
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
++NALL MYAKC ++ A +FDEM S +N++ +I+GYI+ + AR++FD+ +
Sbjct: 335 IDNALLDMYAKCGCLNIARNIFDEM-SMKNVICWTSMISGYINCGDLREARDLFDKSPVR 393
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+VLW +M++G V+ ++A+ LF++M + + PD+ +V++L+ C+ L L+ G+ +H
Sbjct: 394 DVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIH 453
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
++ +N IT D V TALI+MYSKCG ++++L FY+ + KD +WT++I GLA G +
Sbjct: 454 GYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTS 513
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
EALR+F +MER G KP++ TF+ VL+AC H GL+ EG + F M V+R++P +EH+ C+
Sbjct: 514 EALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCV 573
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFIS---YKALLSACITYSEFDLGKKVANNMMKLGN 417
+DLL RAGLL +AEE I+ +P E+ I Y ALLSAC ++ D+G+++A + + +
Sbjct: 574 IDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIES 633
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
+ LL+N YA W + + RR MKEL +K PG S+I++
Sbjct: 634 CDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEV 678
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 344 bits (882), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 174/463 (37%), Positives = 276/463 (59%), Gaps = 1/463 (0%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
MG + HV DSDI+V N++IH AR +FDK RD+ SWN++++ Y
Sbjct: 125 MGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYV 184
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ E L ++++ EGI D++T++ + S+CA+LE L G+ HCY + GL+ +
Sbjct: 185 RRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVP 244
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MY KC ++ A +LFD M + + +VS ++ GY L+D+A ++FDE+ DK
Sbjct: 245 LANALMDMYMKCGNLESARKLFDSM-TNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDK 303
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+V W +M+ G V A + +EAL LF +M + PDE MVS LSACS L L G +H
Sbjct: 304 DVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIH 363
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I ++ ++ + + TALIDMY+KCG + +A+ F + ++ +TWT +I GLA +G +
Sbjct: 364 HYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAH 423
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A+ F +M + P+E TF+ +L+AC H GL+ EG + F +M + + P ++H+ C+
Sbjct: 424 GAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCM 483
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAGLL +AEE IK MP E + + AL AC + +G++ A+ ++++
Sbjct: 484 VDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDS 543
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
YVLL+N Y W E +AR+ M++ K PG S I++
Sbjct: 544 GIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVN 586
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 175/461 (37%), Positives = 277/461 (60%), Gaps = 1/461 (0%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH H+ K S+++V N+LIH Y + AR +FD+ DV +WN ++S YN
Sbjct: 138 GRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNR 197
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E + LF ++ ++ ITLV + SAC++L+ L+ GK VH Y + +E + +
Sbjct: 198 SKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVL 257
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
ENAL+ MYA C +MD AL +FD M SR +++S ++ G+ ++ V LAR FD++ ++D
Sbjct: 258 ENALIDMYAACGDMDTALGIFDNMKSR-DVISWTAIVTGFTNLGQVGLARNYFDKMPERD 316
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
V W +M+ G ++ + +E L LF++M + PDE MVS+L+AC+ L L+ G +
Sbjct: 317 FVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKA 376
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I +N I D+FV ALIDMY CG++E+A+ F +D ++WT +I GLA G G E
Sbjct: 377 YIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEE 436
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F QM + I P+E T + VL AC HSG++ +G + F RM + ++P + H+ C+V
Sbjct: 437 ALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMV 496
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DLL RAG L +A E IK MP + I + +LL AC + + ++ + A +++L ++
Sbjct: 497 DLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGA 556
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLL N YA W ++ E R+ M + +K PG S+I++
Sbjct: 557 VYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEM 597
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 465 | ||||||
| TAIR|locus:2093920 | 687 | AT3G15930 "AT3G15930" [Arabido | 0.995 | 0.673 | 0.368 | 5.6e-84 | |
| TAIR|locus:2206164 | 570 | AT1G31430 [Arabidopsis thalian | 0.987 | 0.805 | 0.380 | 3.6e-82 | |
| TAIR|locus:2041198 | 681 | SLO1 "SLOW GROWTH 1" [Arabidop | 0.991 | 0.676 | 0.359 | 4.1e-81 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.991 | 0.624 | 0.360 | 5.2e-81 | |
| TAIR|locus:2089333 | 654 | AT3G16610 "AT3G16610" [Arabido | 0.658 | 0.467 | 0.393 | 2.5e-79 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.670 | 0.315 | 0.408 | 2.5e-78 | |
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.666 | 0.319 | 0.355 | 1.7e-76 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.993 | 0.662 | 0.353 | 8.1e-76 | |
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.963 | 0.569 | 0.345 | 3.5e-75 | |
| TAIR|locus:2130354 | 722 | AT4G14820 "AT4G14820" [Arabido | 0.987 | 0.635 | 0.352 | 3.1e-74 |
| TAIR|locus:2093920 AT3G15930 "AT3G15930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
Identities = 171/464 (36%), Positives = 277/464 (59%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
GK LH HV K L S++YV N+L+ Y L AR +FD+ DV SWN ++S YN
Sbjct: 154 GKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNR 213
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
+ E + L ++ + +TL+++ SAC++++ K VH Y ++ E L +
Sbjct: 214 MKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRL 273
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
ENAL+ YA C EMD A+R+F M +R +++S ++ GY++ + LAR FD++ +D
Sbjct: 274 ENALVNAYAACGEMDIAVRIFRSMKAR-DVISWTSIVKGYVERGNLKLARTYFDQMPVRD 332
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+ W M+ G ++A E+LE+F++M G+ PDE MVSVL+AC+ L +L+ G +
Sbjct: 333 RISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKT 392
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
+I +N I D V ALIDMY KCG E+A F+ D +D TWT M+ GLAN G G E
Sbjct: 393 YIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQE 452
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
A++VF+QM+ I+P++ T++ VL+AC HSG++ + + F +M +R++P++ H+ C+V
Sbjct: 453 AIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMV 512
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
D+L RAGL+ +A E ++ MP I + ALL A +++ + + A +++L +
Sbjct: 513 DMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGA 572
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
Y LL N YA W ++ E RR + ++ +K PG S+I++ +
Sbjct: 573 VYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGF 616
|
|
| TAIR|locus:2206164 AT1G31430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
Identities = 177/465 (38%), Positives = 270/465 (58%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ +H + K L+ D YV NSL+ Y + +FD+MP RDV SWN L+S Y
Sbjct: 65 GEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVG 124
Query: 62 FSDSGEVLILFKQLIFEG-IVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + +FK++ E + D+ T+V SAC+ L+ L G+ ++ + E +
Sbjct: 125 NGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVV-TEFEMSVR 183
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ M+ KC +D+A +FD M + N+ ++ GY+ +D AR +F+ K
Sbjct: 184 IGNALVDMFCKCGCLDKARAVFDSMRDK-NVKCWTSMVFGYVSTGRIDEARVLFERSPVK 242
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+VLW +MM+G V+ + +EALELF+ M G+ PD V+VS+L+ C+ L+ G+ +H
Sbjct: 243 DVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIH 302
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+I +N +T D V TAL+DMY+KCG +E AL FY+ +D +WT++I GLA G+
Sbjct: 303 GYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSG 362
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
AL ++Y+ME G++ + TFV+VL AC H G + EG ++F M + VQP EH CL
Sbjct: 363 RALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCL 422
Query: 361 VDLLSRAGLLYQAEEFIKIMPAE-DKFIS--YKALLSACITYSEFDLGKKVANNMMKLGN 417
+DLL RAGLL +AEE I M E D+ + Y +LLSA Y + ++VA + K+
Sbjct: 423 IDLLCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEV 482
Query: 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
A+ LL++ YA W +V RR MK+L RK PG S I++
Sbjct: 483 SDSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEI 527
|
|
| TAIR|locus:2041198 SLO1 "SLOW GROWTH 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
Identities = 166/462 (35%), Positives = 273/462 (59%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G + HV K L+ +V N+ IH + +AR +FD+ P RD+ SWN L++ Y
Sbjct: 174 LGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYK 233
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
++ + + ++K + EG+ D +T++ L S+C+ L L+ GK + Y + GL +
Sbjct: 234 KIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIP 293
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ M++KC ++ EA R+FD + +R IVS +I+GY L+D++R++FD++ +K
Sbjct: 294 LVNALMDMFSKCGDIHEARRIFDNL-EKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEK 352
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D+VLW +M+ G V+AK+ ++AL LF++M PDE M+ LSACS L L G +H
Sbjct: 353 DVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIH 412
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
R+I + +++ + + T+L+DMY+KCG++ EAL F+ ++ +T+T +I GLA +G +
Sbjct: 413 RYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDAS 472
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A+ F +M GI P+E TF+ +L+AC H G+I G F +M + + P ++H+ +
Sbjct: 473 TAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIM 532
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAGLL +A+ ++ MP E + ALL C + +LG+K A +++L
Sbjct: 533 VDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDS 592
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
YVLL Y W + ARR M E K PG S I++
Sbjct: 593 GIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEV 634
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| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
Identities = 167/463 (36%), Positives = 273/463 (58%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ LH K+A+ SD++V NSLIH Y A +F + +DV SWN++++ +
Sbjct: 149 LGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFV 208
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L LFK++ E + A +T+V + SACA++ L +G+ V Y + + L
Sbjct: 209 QKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLT 268
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NA+L MY KC +++A RLFD M + N V+ +++GY E + AREV + + K
Sbjct: 269 LANAMLDMYTKCGSIEDAKRLFDAMEEKDN-VTWTTMLDGYAISEDYEAAREVLNSMPQK 327
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239
DIV W +++ + +P EAL +F ++ + + + ++ +VS LSAC+ + L+ GR +
Sbjct: 328 DIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWI 387
Query: 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLG 299
H +I ++ I + V +ALI MYSKCG LE++ F + +DV W+ MI GLA +G G
Sbjct: 388 HSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCG 447
Query: 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359
NEA+ +FY+M+ +KPN TF +V AC H+GL+ E LF +M Y + P +H+ C
Sbjct: 448 NEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYAC 507
Query: 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419
+VD+L R+G L +A +FI+ MP + ALL AC ++ +L + +++L ++
Sbjct: 508 IVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRN 567
Query: 420 HEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDL 462
A+VLLSN YA G W V+E R++M+ +K+PG S I++
Sbjct: 568 DGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEI 610
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| TAIR|locus:2089333 AT3G16610 "AT3G16610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 569 (205.4 bits), Expect = 2.5e-79, Sum P(2) = 2.5e-79
Identities = 122/310 (39%), Positives = 180/310 (58%)
Query: 155 NILINGYIDM-ELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV 213
N +I+ Y L D R+ F EI KD++ + S++ GCV +PEE+ LF +M G+
Sbjct: 347 NTIISFYAKYGSLCDAFRQ-FSEIGLKDVISYNSLITGCVVNCRPEESFRLFHEMRTSGI 405
Query: 214 TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALV 273
PD ++ VL+ACS L+ L +G H + + + + + AL+DMY+KCG L+ A
Sbjct: 406 RPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKR 465
Query: 274 TFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333
F +D+V+W TM+ G +GLG EAL +F M+ G+ P+E T +++L+AC HSGL
Sbjct: 466 VFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGL 525
Query: 334 ITEGCQLFRRMG-GVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKAL 392
+ EG QLF M G + V P I+H+ C+ DLL+RAG L +A +F+ MP E L
Sbjct: 526 VDEGKQLFNSMSRGDFNVIPRIDHYNCMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTL 585
Query: 393 LSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTR 452
LSAC TY +LG +V+ M LG ++ E+ VLLSN Y+ W + A R K+
Sbjct: 586 LSACWTYKNAELGNEVSKKMQSLG-ETTESLVLLSNTYSAAERWEDAARIRMIQKKRGLL 644
Query: 453 KKPGNSIIDL 462
K PG S +D+
Sbjct: 645 KTPGYSWVDV 654
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| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 617 (222.3 bits), Expect = 2.5e-78, Sum P(2) = 2.5e-78
Identities = 128/313 (40%), Positives = 187/313 (59%)
Query: 152 VSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE 211
VS IL + Y+ + A+ FD I D V W +M+ GC++ + E A +F +M
Sbjct: 554 VSSGIL-DMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLM 612
Query: 212 GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
GV PDE + ++ A S L+ L+ GR +H L+ N T D FV T+L+DMY+KCGS+++A
Sbjct: 613 GVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDA 672
Query: 272 LVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331
F + + ++ W M+ GLA +G G E L++F QM+ GIKP++ TF+ VL+AC HS
Sbjct: 673 YCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHS 732
Query: 332 GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKA 391
GL++E + R M G Y ++P IEH+ CL D L RAGL+ QAE I+ M E Y+
Sbjct: 733 GLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRT 792
Query: 392 LLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQT 451
LL+AC + + GK+VA +++L AYVLLSN YA W E+ AR MK +
Sbjct: 793 LLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKV 852
Query: 452 RKKPGNSIIDLKH 464
+K PG S I++K+
Sbjct: 853 KKDPGFSWIEVKN 865
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| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 522 (188.8 bits), Expect = 1.7e-76, Sum P(2) = 1.7e-76
Identities = 111/312 (35%), Positives = 184/312 (58%)
Query: 152 VSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE 211
V L++L + YI + + +FD + DK +V W +++ G ++ P+ AL +F++M+
Sbjct: 533 VYLSVL-SLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLY 591
Query: 212 GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
G+ M+ V ACS L +L+ GR H + L++ + DAF+ +LIDMY+K GS+ ++
Sbjct: 592 GIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQS 651
Query: 272 LVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331
F K +W MI G +GL EA+++F +M+R G P++ TF+ VL AC HS
Sbjct: 652 SKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHS 711
Query: 332 GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS-YK 390
GLI EG + +M + ++P ++H+ C++D+L RAG L +A + +E+ + +K
Sbjct: 712 GLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWK 771
Query: 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450
+LLS+C + ++G+KVA + +L + E YVLLSN YA G W +V + R+ M E+
Sbjct: 772 SLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMS 831
Query: 451 TRKKPGNSIIDL 462
RK G S I+L
Sbjct: 832 LRKDAGCSWIEL 843
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| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
Identities = 167/472 (35%), Positives = 261/472 (55%)
Query: 1 MGKGLHAH--VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSI 58
M KG+ H + K+ SD+Y+G++L+ Y + DA+ +FD+M R+V SWN+L++
Sbjct: 168 MNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITC 227
Query: 59 YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVG-LEY 117
+ + E L +F+ ++ + D++TL + SACA L + G+ VH K L
Sbjct: 228 FEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRN 287
Query: 118 MLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEI 177
+ + NA + MYAKC + EA +FD M R N+++ +I+GY AR +F ++
Sbjct: 288 DIILSNAFVDMYAKCSRIKEARFIFDSMPIR-NVIAETSMISGYAMAASTKAARLMFTKM 346
Query: 178 VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237
++++V W +++ G + + EEAL LF + E V P ++L AC+ L+ L G
Sbjct: 347 AERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGM 406
Query: 238 ------LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIE 291
L H F Q+ D FV +LIDMY KCG +EE + F K +D V+W MI
Sbjct: 407 QAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMII 466
Query: 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ 351
G A G GNEAL +F +M G KP+ T + VL+AC H+G + EG F M + V
Sbjct: 467 GFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVA 526
Query: 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANN 411
P +H+ C+VDLL RAG L +A+ I+ MP + + + +LL+AC + LGK VA
Sbjct: 527 PLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEK 586
Query: 412 MMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
++++ + YVLLSN YA G W +V R++M++ K+PG S I ++
Sbjct: 587 LLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQ 638
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| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
Identities = 156/451 (34%), Positives = 265/451 (58%)
Query: 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76
DI N++I + ++ A F++M RD+ +WN+++S +N L +F +++
Sbjct: 211 DISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKML 270
Query: 77 FEGIVA-DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM 135
+ +++ D+ TL + SACA LEKL GK +H + G + + NAL+ MY++C +
Sbjct: 271 RDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGV 330
Query: 136 DEALRLFDEMGSRR-NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK 194
+ A RL ++ G++ I L++GYI + ++ A+ +F + D+D+V W +M+ G +
Sbjct: 331 ETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQ 390
Query: 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254
EA+ LF+ M+ G P+ + ++LS SSL++L +G+ +H +++ V
Sbjct: 391 HGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSV 450
Query: 255 KTALIDMYSKCGSLEEALVTFYKTDC-KDVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313
ALI MY+K G++ A F C +D V+WT+MI LA +G EAL +F M +G
Sbjct: 451 SNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEG 510
Query: 314 IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373
++P+ T+V V +AC H+GL+ +G Q F M V ++ PT+ H+ C+VDL RAGLL +A
Sbjct: 511 LRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEA 570
Query: 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALE 433
+EFI+ MP E +++ +LLSAC + DLGK A ++ L ++ AY L+N Y+
Sbjct: 571 QEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSAC 630
Query: 434 GHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464
G W E A+ R++MK+ + +K+ G S I++KH
Sbjct: 631 GKWEEAAKIRKSMKDGRVKKEQGFSWIEVKH 661
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| TAIR|locus:2130354 AT4G14820 "AT4G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 162/460 (35%), Positives = 254/460 (55%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G LH K A D +V + Y AR +FD+M RDV +WNT++ Y
Sbjct: 130 GMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCR 189
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
F E LF+++ ++ D++ L + SAC R + Y + ++ + + + ++
Sbjct: 190 FGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHL 249
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ MYA MD A F +M S RN+ +++GY +D A+ +FD+ KD
Sbjct: 250 LTALVTMYAGAGCMDMAREFFRKM-SVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKD 308
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
+V W +M+ V++ P+EAL +F++M G+ PD M SV+SAC++L L + VH
Sbjct: 309 LVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHS 368
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
I N + + + ALI+MY+KCG L+ F K ++VV+W++MI L+ +G ++
Sbjct: 369 CIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASD 428
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361
AL +F +M+++ ++PNE TFV VL C HSGL+ EG ++F M Y + P +EH+ C+V
Sbjct: 429 ALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMV 488
Query: 362 DLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421
DL RA LL +A E I+ MP + + +L+SAC + E +LGK A +++L
Sbjct: 489 DLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDG 548
Query: 422 AYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461
A VL+SN YA E W +V RR M+E K+ G S ID
Sbjct: 549 ALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRID 588
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pg.C_LG_I003326 | hypothetical protein (601 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 465 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-93 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-76 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-55 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-51 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-39 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-28 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-27 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 300 bits (770), Expect = 2e-93
Identities = 151/463 (32%), Positives = 242/463 (52%), Gaps = 34/463 (7%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
+G+ +H +V KT D+ V NSLI Y + + +A +F +M +D SW ++S Y
Sbjct: 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ L + + + + D+IT+ + SACA L L G +H A + GL +
Sbjct: 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ NAL+ MY+KCK +D+AL EVF I +K
Sbjct: 426 VANALIEMYSKCKCIDKAL--------------------------------EVFHNIPEK 453
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D++ W S++ G + EAL F++M+ + P+ +++ LSAC+ + L G+ +H
Sbjct: 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIH 512
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+L+ I D F+ AL+D+Y +CG + A F + KDVV+W ++ G +G G+
Sbjct: 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-NSHEKDVVSWNILLTGYVAHGKGS 571
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360
A+ +F +M G+ P+E TF+S+L AC SG++T+G + F M Y + P ++H+ C+
Sbjct: 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631
Query: 361 VDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420
VDLL RAG L +A FI MP + ALL+AC + +LG+ A ++ +L S
Sbjct: 632 VDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSV 691
Query: 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLK 463
Y+LL N YA G W EVA R+ M+E PG S +++K
Sbjct: 692 GYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVK 734
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 252 bits (645), Expect = 2e-76
Identities = 137/458 (29%), Positives = 237/458 (51%), Gaps = 38/458 (8%)
Query: 3 KGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDF 62
K ++ HV + + D Y+ N ++ + + + DAR LFD+MP R++ SW T++ D
Sbjct: 143 KAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDA 202
Query: 63 SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME 122
+ E LF+++ +G A+ T V++ A A L G+ +HC K G+ +
Sbjct: 203 GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVS 262
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDI 182
AL+ MY+KC ++++A +FD M + V+ N ++ GY
Sbjct: 263 CALIDMYSKCGDIEDARCVFDGM-PEKTTVAWNSMLAGYA-------------------- 301
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRF 242
+HG EEAL L+ +M D GV+ D+ ++ S L+ L++ + H
Sbjct: 302 ------LHGY-----SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAG 350
Query: 243 ILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302
+++ D TAL+D+YSK G +E+A F + K++++W +I G N+G G +A
Sbjct: 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKA 410
Query: 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362
+ +F +M +G+ PN TF++VL+ACR+SGL +G ++F+ M +R++P H+ C+++
Sbjct: 411 VEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470
Query: 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422
LL R GLL +A I+ P + + ALL+AC + +LG+ A + +G +
Sbjct: 471 LLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNN 530
Query: 423 YVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460
YV+L N Y G E A K ++T K+ G S+
Sbjct: 531 YVVLLNLYNSSGRQAEAA------KVVETLKRKGLSMH 562
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 196 bits (499), Expect = 6e-55
Identities = 108/337 (32%), Positives = 164/337 (48%), Gaps = 33/337 (9%)
Query: 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYN 60
G+ +HAHV + + D+ V N+LI Y + AR++FD+MP RD SWN ++S Y
Sbjct: 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYF 264
Query: 61 DFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN 120
+ + E L LF + + D +T+ + SAC L G+ +H Y K G ++
Sbjct: 265 ENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVS 324
Query: 121 MENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180
+ N+L+ MY EA ++F M + K
Sbjct: 325 VCNSLIQMYLSLGSWGEAEKVFSRMET--------------------------------K 352
Query: 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240
D V W +M+ G K P++ALE + M + V+PDE + SVLSAC+ L +L G +H
Sbjct: 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH 412
Query: 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300
+ + V ALI+MYSKC +++AL F+ KDV++WT++I GL
Sbjct: 413 ELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCF 472
Query: 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337
EAL F QM +KPN T ++ L+AC G + G
Sbjct: 473 EALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCG 508
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 185 bits (470), Expect = 5e-51
Identities = 114/406 (28%), Positives = 188/406 (46%), Gaps = 41/406 (10%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G + + + + +GN+++ + R A +F KMP RD+ SWN L+ Y
Sbjct: 105 GSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAK 164
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
E L L+ ++++ G+ D T + C + L G+ VH + + G E +++
Sbjct: 165 AGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV 224
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
NAL+ MY KC ++ A +FD M RR+ +S N +I+GY +
Sbjct: 225 VNALITMYVKCGDVVSARLVFDRM-PRRDCISWNAMISGYFEN----------------- 266
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
C E LELF M + V PD + SV+SAC L + + GR +H
Sbjct: 267 --------GEC------LEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHG 312
Query: 242 FILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNE 301
++++ D V +LI MY GS EA F + + KD V+WT MI G GL ++
Sbjct: 313 YVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDK 372
Query: 302 ALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFR---RMGGVYRVQPTIEHFV 358
AL + ME+ + P+E T SVL+AC G + G +L R G + V
Sbjct: 373 ALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA--- 429
Query: 359 CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSA-CITYSEFD 403
L+++ S+ + +A E +P +D IS+ ++++ + F+
Sbjct: 430 -LIEMYSKCKCIDKALEVFHNIPEKD-VISWTSIIAGLRLNNRCFE 473
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (382), Expect = 1e-39
Identities = 93/316 (29%), Positives = 140/316 (44%), Gaps = 56/316 (17%)
Query: 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149
L AC L+ + K V+ + G E M N +LLM+ KC + +A RLFDEM R
Sbjct: 129 LVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM-PER 187
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209
N+ S W +++ G V A EA LF++M
Sbjct: 188 NLAS-------------------------------WGTIIGGLVDAGNYREAFALFREMW 216
Query: 210 DEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269
++G + V +L A + L + + G+ +H +L+ + D FV ALIDMYSKCG +E
Sbjct: 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276
Query: 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329
+A F K V W +M+ G A +G EAL ++Y+M G+ ++ TF ++
Sbjct: 277 DARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336
Query: 330 -----------HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIK 378
H+GLI G L I LVDL S+ G + A
Sbjct: 337 RLALLEHAKQAHAGLIRTGFPL------------DIVANTALVDLYSKWGRMEDARNVFD 384
Query: 379 IMPAEDKFISYKALLS 394
MP ++ IS+ AL++
Sbjct: 385 RMPRKN-LISWNALIA 399
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 5e-28
Identities = 84/316 (26%), Positives = 133/316 (42%), Gaps = 38/316 (12%)
Query: 83 DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLF 142
D+ V LF C + G V A + + NA+L M+ + E+ A +F
Sbjct: 85 DEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVF 144
Query: 143 DEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEAL 202
+M R++ S N+L+ GY KA +EAL
Sbjct: 145 GKM-PERDLFSWNVLVGGY-------------------------------AKAGYFDEAL 172
Query: 203 ELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262
L+ +M+ GV PD VL C + +L GR VH +++ D V ALI MY
Sbjct: 173 CLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232
Query: 263 SKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV 322
KCG + A + F + +D ++W MI G G E L +F+ M + P+ T
Sbjct: 233 VKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292
Query: 323 SVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC--LVDLLSRAGLLYQAEEFIKIM 380
SV++AC G G ++ G V + ++ VC L+ + G +AE+ M
Sbjct: 293 SVISACELLGDERLGREMH---GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349
Query: 381 PAEDKFISYKALLSAC 396
+D +S+ A++S
Sbjct: 350 ETKD-AVSWTAMISGY 364
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 1e-27
Identities = 91/342 (26%), Positives = 150/342 (43%), Gaps = 41/342 (11%)
Query: 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND 61
G+ LH V KT + D +V +LI Y + DAR +FD MP + +WN++++ Y
Sbjct: 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYAL 302
Query: 62 FSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNM 121
S E L L+ ++ G+ D+ T I+ +RL L + K H + G +
Sbjct: 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362
Query: 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD 181
AL+ +Y+K M++A +FD M R+N++S N LI GY +
Sbjct: 363 NTALVDLYSKWGRMEDARNVFDRM-PRKNLISWNALIAGYGN------------------ 403
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR 241
HG + +A+E+F++MI EGV P+ ++VLSAC + G + +
Sbjct: 404 --------HG-----RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQ 450
Query: 242 FILQNN-ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT-WTTMIEGL---ANY 296
+ +N+ I A +I++ + G L+EA + K V W ++ N
Sbjct: 451 SMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNL 510
Query: 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGC 338
LG A Y M + + +V +L SG E
Sbjct: 511 ELGRLAAEKLYGMGPEKL----NNYVVLLNLYNSSGRQAEAA 548
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 2e-13
Identities = 75/380 (19%), Positives = 151/380 (39%), Gaps = 56/380 (14%)
Query: 44 MPFRDVGSWNTLMSI---YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKL 100
+ + ++N LMS+ D + VL L ++ G+ AD L S CA+ K+
Sbjct: 432 IRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQE---AGLKADCKLYTTLISTCAKSGKV 488
Query: 101 HYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR---NIVSLNIL 157
V G+E ++ AL+ A+ ++ +A + M S+ + V N L
Sbjct: 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548
Query: 158 INGYIDMELVDLAREVFDEI------VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE 211
I+ VD A +V E+ +D D + ++M C A Q + A E+++ + +
Sbjct: 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608
Query: 212 GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271
+ EV +++CS + + ++ + + + D +AL+D+ G L+
Sbjct: 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLD-- 666
Query: 272 LVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331
+A + ++GIK ++ S++ AC ++
Sbjct: 667 -----------------------------KAFEILQDARKQGIKLGTVSYSSLMGACSNA 697
Query: 332 GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIK------IMPAEDK 385
+ +L+ + + +++PT+ L+ L L +A E + + P
Sbjct: 698 KNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT-- 754
Query: 386 FISYKALLSACITYSEFDLG 405
I+Y LL A + D+G
Sbjct: 755 -ITYSILLVASERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 5e-13
Identities = 38/142 (26%), Positives = 69/142 (48%)
Query: 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246
S + Q E+AL+L + M + V DE+ V++ C ++ G V L +
Sbjct: 56 SQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSS 115
Query: 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF 306
+ + + A++ M+ + G L A F K +D+ +W ++ G A G +EAL ++
Sbjct: 116 HPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLY 175
Query: 307 YQMERKGIKPNEATFVSVLAAC 328
++M G++P+ TF VL C
Sbjct: 176 HRMLWAGVRPDVYTFPCVLRTC 197
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 9e-12
Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 8/193 (4%)
Query: 193 VKAKQPEEALELFKKM-IDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD 251
V + EALELF+ + T +++ AC +L +++ + V+ + + D
Sbjct: 98 VACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPD 157
Query: 252 AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311
++ ++ M+ KCG L +A F + +++ +W T+I GL + G EA +F +M
Sbjct: 158 QYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE 217
Query: 312 KGIKPNEATFVSVLAACRHSGLITEGCQLF--RRMGGVYRVQPTIEHFVC-LVDLLSRAG 368
G TFV +L A G G QL GV C L+D+ S+ G
Sbjct: 218 DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDT----FVSCALIDMYSKCG 273
Query: 369 LLYQAEEFIKIMP 381
+ A MP
Sbjct: 274 DIEDARCVFDGMP 286
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 1e-10
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 281 KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328
DVVT+ T+I+G G EAL++F +M+++GIKPN T+ ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 4e-09
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 20/171 (11%)
Query: 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336
K DCK +TT+I A G + VF++M G++ N TF +++ C +G
Sbjct: 469 KADCK---LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG---- 521
Query: 337 GCQLFRRMG--GVYR---VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK-----F 386
Q+ + G G+ R V+P F L+ ++G + +A + + M AE
Sbjct: 522 --QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH 579
Query: 387 ISYKALLSACITYSEFDLGKKVANNMMKLGNQ-SHEAYVLLSNFYALEGHW 436
I+ AL+ AC + D K+V + + + + E Y + N + +G W
Sbjct: 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW 630
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 2e-07
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDE 217
D+V + +++ G K + EEAL+LF +M G+ P+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNV 38
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 5e-07
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 123 NALLLMYAKCKEMDEALRLFDEMGSRR---NIVSLNILINGY 161
N L+ Y K +++EAL+LF+EM R N+ + +ILI+G
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 1e-06
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDE 217
V + +++ G KA + EEALELFK+M + G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 7e-06
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE 318
VT+ T+I+GL G EAL +F +M+ +GI+P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 1e-05
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGV 213
V + S++ G KA + EEALELFK+M ++GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 1e-04
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 150 NIVSLNILINGYIDMELVDLAREVFDEIVDK----DIVLWRSMMHGCVK 194
++V+ N LI+GY V+ A ++F+E+ + ++ + ++ G K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGI 314
VT+ ++I G G EAL +F +M+ KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 4e-04
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP 215
+ + +++ KA P+ AL + ++M G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.001
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316
+ T+ ++ LA G + AL V +M+ G+KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (83), Expect = 0.002
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 282 DVVTWTTMIEGLANYGLGNEALRVFYQME 310
DVVT+ T+I+GL G +EA+ + +ME
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 465 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.84 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.84 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.79 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.75 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.75 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.75 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.71 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.7 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.7 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.7 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.69 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.68 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.67 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.66 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.66 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.64 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.64 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.62 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.62 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.62 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.6 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.58 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.56 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.55 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.54 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.54 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.53 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.52 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.47 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.47 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.45 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.43 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.4 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.4 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.39 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.39 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.38 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.38 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.37 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.36 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.36 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.35 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.35 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.35 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.34 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.34 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.33 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.33 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.31 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.27 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.25 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.25 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.24 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.24 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.22 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.22 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.19 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.19 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.15 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.14 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.11 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.11 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.1 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.1 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.08 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.08 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.07 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.03 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.0 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.0 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.97 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.95 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.95 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.9 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.88 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.87 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.87 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.87 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.85 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.84 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.82 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.82 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.81 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.81 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.8 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.78 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.77 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.76 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.74 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.73 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.73 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.71 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.7 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.7 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.68 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.67 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.66 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.65 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.64 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.61 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.6 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.57 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.56 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.52 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.52 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.51 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.48 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.48 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.43 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.42 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.38 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.36 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.32 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.31 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.31 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.31 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.27 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.27 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.26 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.26 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.26 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.22 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.21 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.2 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.17 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.15 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.13 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.12 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.09 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.05 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.05 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.03 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.02 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.0 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.99 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.97 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.97 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.97 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.95 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.95 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.94 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.9 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.89 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.89 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.88 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.87 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.83 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.82 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.81 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.8 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.76 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.73 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.72 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.72 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.71 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.71 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.71 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.7 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.69 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.66 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.66 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.65 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.63 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.62 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.62 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.61 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.58 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.56 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.55 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.55 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.53 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.53 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.53 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.53 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.52 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.52 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.48 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.47 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.47 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.47 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.46 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.45 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.45 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.44 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.44 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.4 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.35 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.35 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.31 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.3 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.3 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.29 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.21 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.18 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.06 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.02 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.99 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.96 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.95 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.91 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.87 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.86 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.83 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.78 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.75 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.74 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.71 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.7 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.63 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.6 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.55 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.47 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.39 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 96.34 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.3 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.28 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.27 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.24 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.21 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.19 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.18 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.18 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.17 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.1 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.07 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.02 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.01 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.97 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.9 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.88 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.86 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.82 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.72 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.72 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.59 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.51 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.49 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.31 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.31 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.24 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.18 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.07 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.05 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 94.94 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.91 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.88 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.85 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.75 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.64 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.58 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.5 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.45 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.44 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.39 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.29 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.16 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.88 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 93.87 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.63 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.62 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.45 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 93.43 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 93.28 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.26 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.25 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 92.83 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.61 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.59 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 92.56 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.55 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.52 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.43 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.37 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.29 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 92.27 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.24 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 92.12 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 92.05 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 91.99 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.92 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.77 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.65 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.5 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.45 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 91.34 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 90.91 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 90.81 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 90.54 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 90.53 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.17 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 89.96 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.93 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 89.8 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 89.79 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 89.75 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.67 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.35 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.29 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 89.11 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.99 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.98 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 88.68 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 88.68 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.61 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.5 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.48 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.32 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.07 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 87.97 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 87.35 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 87.29 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 87.27 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 87.2 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 87.16 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 87.12 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 87.12 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.83 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 86.73 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 86.71 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 86.59 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 86.28 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 86.12 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 85.66 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.55 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 85.54 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 85.24 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 85.12 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 84.94 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 84.86 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 84.49 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 84.27 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 84.21 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 83.89 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 83.29 | |
| PF09477 | 116 | Type_III_YscG: Bacterial type II secretion system | 82.92 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 82.44 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.46 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 81.15 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 80.7 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-72 Score=559.52 Aligned_cols=460 Identities=35% Similarity=0.618 Sum_probs=418.7
Q ss_pred ccchhHHHHHhccCCcchhhhHHHHHHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 012360 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81 (465)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 81 (465)
|++++..|.+.|+.||+.++|.|+..|++.|++++|.++|++|+.+|..+||++|.+|++.|++++|+++|++|.+.|+.
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 56788888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHH
Q 012360 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGY 161 (465)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 161 (465)
||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~~s~n~li~~~ 364 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-TKDAVSWTAMISGY 364 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999998888888888888888888887774 45555555555555
Q ss_pred HhcCC----------------------------------------------------------------------hHHHH
Q 012360 162 IDMEL----------------------------------------------------------------------VDLAR 171 (465)
Q Consensus 162 ~~~~~----------------------------------------------------------------------~~~a~ 171 (465)
++.|+ +++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 54444 44444
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCC
Q 012360 172 EVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD 251 (465)
Q Consensus 172 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 251 (465)
++|++|.++|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++
T Consensus 445 ~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~ 523 (857)
T PLN03077 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD 523 (857)
T ss_pred HHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc
Confidence 445555555556666666666677777777777777764 5889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 012360 252 AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331 (465)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 331 (465)
..+++.++.+|++.|++++|.++|+.+ .+|..+|++++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 602 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc
Confidence 999999999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHH
Q 012360 332 GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANN 411 (465)
Q Consensus 332 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 411 (465)
|++++|.++|+.|.+.+++.|+..+|+.++++|++.|++++|.+++++|..+|+..+|++|+.+|..+|+.+.++...++
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~ 682 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQH 682 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99999999999999667999999999999999999999999999999999899999999999999999999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCCCeeeecCC
Q 012360 412 MMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464 (465)
Q Consensus 412 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (465)
+.++.|+++..|..|.+.|...|+|++|.++.+.|++.|++++||+|||++++
T Consensus 683 l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~ 735 (857)
T PLN03077 683 IFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKG 735 (857)
T ss_pred HHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECC
Confidence 99999999999999999999999999999999999999999999999999976
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-72 Score=545.77 Aligned_cols=459 Identities=24% Similarity=0.358 Sum_probs=445.3
Q ss_pred ccchhHHHHHhc-cCCcchhhhHHHHHHHccCChHHHHHHhccCC----CCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 012360 2 GKGLHAHVTKTA-LDSDIYVGNSLIHFYGRMALFTDARVLFDKMP----FRDVGSWNTLMSIYNDFSDSGEVLILFKQLI 76 (465)
Q Consensus 2 ~~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 76 (465)
|.++|..|...+ +.||..+|+.++.++++.++++.|.+++..|. .||..+||.++.+|++.|++++|.++|++|.
T Consensus 106 Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~ 185 (697)
T PLN03081 106 ALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP 185 (697)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC
Confidence 567899998765 78999999999999999999999999999886 6799999999999999999999999999996
Q ss_pred HcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh---CCCCCchh
Q 012360 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM---GSRRNIVS 153 (465)
Q Consensus 77 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~ 153 (465)
.||..+|+.++.+|++.|++++|.++|++|.+.|..|+..+|+.++.++++.|+.+.+.+++..+ +..||..+
T Consensus 186 ----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~ 261 (697)
T PLN03081 186 ----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFV 261 (697)
T ss_pred ----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcccee
Confidence 48999999999999999999999999999999999999999999999999999999999998887 88999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhh
Q 012360 154 LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNL 233 (465)
Q Consensus 154 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 233 (465)
|+.++.+|++.|++++|.++|+.|.++|..+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~ 341 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL 341 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012360 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313 (465)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 313 (465)
+.|.+++..|.+.|+.|+..+++.++.+|++.|++++|.++|++|.++|..+|++||.+|++.|+.++|.++|++|.+.|
T Consensus 342 ~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g 421 (697)
T PLN03081 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421 (697)
T ss_pred HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHH
Q 012360 314 IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALL 393 (465)
Q Consensus 314 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 393 (465)
+.||..||+.++.+|++.|+.++|.++|+.|.+.+++.|+..+|+.++++|++.|++++|.++++++...|+..+|+.++
T Consensus 422 ~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll 501 (697)
T PLN03081 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALL 501 (697)
T ss_pred CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999998777999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCCCeeeecCC
Q 012360 394 SACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIIDLKH 464 (465)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (465)
.+|...|+++.|..+++++.+.+|++...|..|+++|.+.|++++|.+++++|++.|+.+.||+||+++++
T Consensus 502 ~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~ 572 (697)
T PLN03081 502 TACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKK 572 (697)
T ss_pred HHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECC
Confidence 99999999999999999999999999989999999999999999999999999999999999999999875
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-65 Score=514.26 Aligned_cols=451 Identities=28% Similarity=0.442 Sum_probs=406.8
Q ss_pred ccchhHHHHHhccCCcchhhhHHHHHHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 012360 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81 (465)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 81 (465)
|.+++..+.+.|..+++.++|.++..|++.|+++.|.++|++|++||..+||.+|.+|++.|++++|+++|++|...|+.
T Consensus 105 a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~ 184 (857)
T PLN03077 105 GSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR 184 (857)
T ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 45678888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhC---------------
Q 012360 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG--------------- 146 (465)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------- 146 (465)
||..||+.++++|+..+++..+.+++..+.+.|+.|+..+++.++.+|++.|+++.|.++|++|.
T Consensus 185 Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~ 264 (857)
T PLN03077 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYF 264 (857)
T ss_pred CChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHH
Confidence 99999988888888777777777777777777777766666666666666666666666665552
Q ss_pred ------------------------------------------------------CCCCchhHHHHHHHHHhcCChHHHHH
Q 012360 147 ------------------------------------------------------SRRNIVSLNILINGYIDMELVDLARE 172 (465)
Q Consensus 147 ------------------------------------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~ 172 (465)
..||..+|+.++.+|++.|++++|.+
T Consensus 265 ~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~ 344 (857)
T PLN03077 265 ENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344 (857)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHH
Confidence 23445555556666667788888888
Q ss_pred HHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCCh
Q 012360 173 VFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDA 252 (465)
Q Consensus 173 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 252 (465)
+|++|..||..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+.
T Consensus 345 vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~ 424 (857)
T PLN03077 345 VFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV 424 (857)
T ss_pred HHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcch
Confidence 88888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 012360 253 FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332 (465)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 332 (465)
.+++.++.+|++.|++++|.++|++|.++|..+|+.++.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|
T Consensus 425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g 503 (857)
T PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIG 503 (857)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999986 58999999999999999999
Q ss_pred CHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 012360 333 LITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNM 412 (465)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 412 (465)
+.+.+.+++..+.+. |+.++..+++.|+++|.++|++++|.++|+.+ .+|..+|+.++.+|++.|+.++|+++|++|
T Consensus 504 ~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 504 ALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred hHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999976 99999999999999999999999999999998 789999999999999999999999999999
Q ss_pred HHhC-CCCchhHHHHHHHHhhcCChHHHHHHHHHHH-HhcCCCCCC
Q 012360 413 MKLG-NQSHEAYVLLSNFYALEGHWTEVAEARRNMK-ELQTRKKPG 456 (465)
Q Consensus 413 ~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~ 456 (465)
.+.+ .++..+|..++.+|.+.|++++|.++|+.|. +.|+.|+..
T Consensus 581 ~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~ 626 (857)
T PLN03077 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK 626 (857)
T ss_pred HHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchH
Confidence 9977 3445559999999999999999999999998 789988753
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-65 Score=501.22 Aligned_cols=452 Identities=16% Similarity=0.212 Sum_probs=302.4
Q ss_pred ccchhHHHHHhcc-CCcchhhhHHHHHHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 012360 2 GKGLHAHVTKTAL-DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGI 80 (465)
Q Consensus 2 ~~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 80 (465)
|.++|++|.+.|+ +++..+++.++..|.+.|.+++|..+|+.|..||..+|+.++.+|++.|+++.|.++|+.|.+.|+
T Consensus 389 Al~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl 468 (1060)
T PLN03218 389 CIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGL 468 (1060)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC
Confidence 5678888888884 556666666677777777777777777777666777777777777777777777777777777676
Q ss_pred CCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh---CCCCCchhHHHH
Q 012360 81 VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM---GSRRNIVSLNIL 157 (465)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l 157 (465)
.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++| ++.||..+|+.+
T Consensus 469 ~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsL 548 (1060)
T PLN03218 469 KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 77777777777777777777777777777776666677777777777777777777777777666 566677777777
Q ss_pred HHHHHhcCChHHHHHHHHHhh------cCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccch
Q 012360 158 INGYIDMELVDLAREVFDEIV------DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231 (465)
Q Consensus 158 ~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 231 (465)
|.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|
T Consensus 549 I~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G 628 (1060)
T PLN03218 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG 628 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Confidence 777777777777777776663 35666677777777777777777777777766666666666777777776667
Q ss_pred hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhhHHHHHHHHHHcCChHHHHHHHH
Q 012360 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD----CKDVVTWTTMIEGLANYGLGNEALRVFY 307 (465)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 307 (465)
++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|. .||..+|+.++.+|++.|++++|.++|+
T Consensus 629 ~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~ 708 (1060)
T PLN03218 629 DWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 777777777776666666666666666666666666666666666654 3566666666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC---CC
Q 012360 308 QMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA---ED 384 (465)
Q Consensus 308 ~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~ 384 (465)
+|.+.|+.||..+|+.+|.+|++.|++++|.++|++|... |+.||..+|+.++.+|++.|++++|.++++.|.. .|
T Consensus 709 eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~p 787 (1060)
T PLN03218 709 DIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKP 787 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 6666666666666666666666666666666666666644 6666666666666666666666666666666643 44
Q ss_pred ccchHHHHHHHHHh----c-------------------CChHHHHHHHHHHHHhC-------------------------
Q 012360 385 KFISYKALLSACIT----Y-------------------SEFDLGKKVANNMMKLG------------------------- 416 (465)
Q Consensus 385 ~~~~~~~l~~~~~~----~-------------------~~~~~a~~~~~~~~~~~------------------------- 416 (465)
|..+|+.++..|.+ . +..+.|..+|++|++.+
T Consensus 788 d~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~ 867 (1060)
T PLN03218 788 NLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRN 867 (1060)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHH
Confidence 56666666544321 1 11245666666666555
Q ss_pred -----------CCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCC
Q 012360 417 -----------NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPG 456 (465)
Q Consensus 417 -----------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 456 (465)
+++..+|+.++.++.+ ..++|..++++|...|+.|+..
T Consensus 868 ~m~~~m~~~~~~~~~~~y~~Li~g~~~--~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 868 RLIENLGISADSQKQSNLSTLVDGFGE--YDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHhccCCCCcchhhhHHHHHhhcc--ChHHHHHHHHHHHHcCCCCCcc
Confidence 2223345555555522 1246888888888888877764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-64 Score=496.62 Aligned_cols=412 Identities=16% Similarity=0.194 Sum_probs=329.2
Q ss_pred ccchhHHHHHhccCCcchhhhHHHHHHHccCChHHHHHHhccCC----CCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 012360 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP----FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIF 77 (465)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 77 (465)
|.++|..|++.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 456 A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~ 535 (1060)
T PLN03218 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56778888888888888888888888888888888888888876 56778888888888888888888888888888
Q ss_pred cCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHH--hCCccchhhHHHHHHHHHhCCChHHHHHHHHhh---CCCCCch
Q 012360 78 EGIVADKITLVILFSACARLEKLHYGKTVHCYATK--VGLEYMLNMENALLLMYAKCKEMDEALRLFDEM---GSRRNIV 152 (465)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~ 152 (465)
.|+.||..+|+.+|.+|++.|++++|.+++++|.. .|+.||..+|+.++.+|++.|++++|.++|+.| ++.|+..
T Consensus 536 ~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ 615 (1060)
T PLN03218 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChH
Confidence 88888888888888888888888888888888865 467788888888888888888888888888888 6677888
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhh----cCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 012360 153 SLNILINGYIDMELVDLAREVFDEIV----DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACS 228 (465)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 228 (465)
+|+.+|.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++.+|+
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 88888888888888888888888874 46778888888888888888888888888888888888888888888888
Q ss_pred cchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhhHHHHHHHHHHcCChHHHHH
Q 012360 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD----CKDVVTWTTMIEGLANYGLGNEALR 304 (465)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~ 304 (465)
+.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.+
T Consensus 696 k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 888888888888888888888888888888888888888888888887664 4778888888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHhhcCCCCCCChhhHHHHH
Q 012360 305 VFYQMERKGIKPNEATFVSVLAACRH----S-------------------GLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361 (465)
Q Consensus 305 ~~~~m~~~g~~p~~~~~~~l~~~~~~----~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 361 (465)
++.+|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.+. |+.||..+|+.++
T Consensus 776 l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~-Gi~Pd~~T~~~vL 854 (1060)
T PLN03218 776 LLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA-GTLPTMEVLSQVL 854 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC-CCCCCHHHHHHHH
Confidence 88888888888888888887765432 1 1235678888888866 8888888888888
Q ss_pred HHHHhcCCHHHHHHHHHhCCC---CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 362 DLLSRAGLLYQAEEFIKIMPA---EDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 362 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
.+++..+....+..+++.+.. .++..+|++++.++.+. .++|..++++|.+.|
T Consensus 855 ~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 855 GCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 777777888888888887754 34677889999887432 368999999999988
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-61 Score=469.11 Aligned_cols=453 Identities=21% Similarity=0.317 Sum_probs=412.1
Q ss_pred ccchhHHHHHhccCCcchhhhHHHHHHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 012360 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIV 81 (465)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 81 (465)
|++++..|++.|+.||+.+|+.++..|++.|++++|.++|++|+.||..+||.++.+|++.|++++|+++|++|.+.|+.
T Consensus 142 a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~ 221 (697)
T PLN03081 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD 221 (697)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHH
Q 012360 82 ADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGY 161 (465)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 161 (465)
||..+|..++.+|+..|..+.+.+++..+.+.|+.+|..+++.|+.+|++.|++++|.++|++|. ++|..+|+.++.+|
T Consensus 222 p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~~~vt~n~li~~y 300 (697)
T PLN03081 222 AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-EKTTVAWNSMLAGY 300 (697)
T ss_pred CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-CCChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999996 68999999999999
Q ss_pred HhcCChHHHHHHHHHh----hcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHH
Q 012360 162 IDMELVDLAREVFDEI----VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237 (465)
Q Consensus 162 ~~~~~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 237 (465)
++.|+.++|.++|++| ..||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|+++.|.
T Consensus 301 ~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~ 380 (697)
T PLN03081 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH
Confidence 9999999999999999 468999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH-C
Q 012360 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD----CKDVVTWTTMIEGLANYGLGNEALRVFYQMER-K 312 (465)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~ 312 (465)
++|++|.+ ||..+|+.++.+|++.|+.++|.++|++|. .||..+|+.++.+|.+.|+.++|.++|+.|.+ .
T Consensus 381 ~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~ 456 (697)
T PLN03081 381 NVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH 456 (697)
T ss_pred HHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence 99999964 788999999999999999999999999876 58999999999999999999999999999986 6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHH
Q 012360 313 GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYK 390 (465)
Q Consensus 313 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~ 390 (465)
|+.|+..+|+.++.+|++.|++++|.++++++ ++.|+..+|+.|+.+|...|+++.|..+++++.. .| +..+|.
T Consensus 457 g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~ 532 (697)
T PLN03081 457 RIKPRAMHYACMIELLGREGLLDEAYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV 532 (697)
T ss_pred CCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchH
Confidence 99999999999999999999999999999876 4579999999999999999999999999998755 44 577999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCC--CCchhHHHHHH---HHh--------hcCChHHHHHHHHHHHHhcCCCCCCC
Q 012360 391 ALLSACITYSEFDLGKKVANNMMKLGN--QSHEAYVLLSN---FYA--------LEGHWTEVAEARRNMKELQTRKKPGN 457 (465)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~---~~~--------~~g~~~~a~~~~~~~~~~~~~~~~~~ 457 (465)
.++..|++.|++++|.+++++|.+.+- .+...|..+.. .+. ...-++...++.++|++.|..|+...
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~ 612 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENE 612 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcch
Confidence 999999999999999999999999872 22221211100 000 01123455677888889999888766
Q ss_pred eeeecC
Q 012360 458 SIIDLK 463 (465)
Q Consensus 458 ~~~~~~ 463 (465)
...+++
T Consensus 613 ~~~~~~ 618 (697)
T PLN03081 613 LLPDVD 618 (697)
T ss_pred hhcccc
Confidence 555443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-31 Score=272.00 Aligned_cols=425 Identities=11% Similarity=0.045 Sum_probs=288.2
Q ss_pred CCcchhhhHHHHHHHccCChHHHHHHhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHH
Q 012360 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMP---FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILF 91 (465)
Q Consensus 15 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 91 (465)
++++.++..+...+...|++++|...|+++. +.+...+..+...+...|++++|.+.|+++...+ +.+..++..+.
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 540 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALA 540 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4456666666667777777777777766653 2244455666666666777777777777766543 33455666666
Q ss_pred HHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh--CCCCCchhHHHHHHHHHhcCChHH
Q 012360 92 SACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM--GSRRNIVSLNILINGYIDMELVDL 169 (465)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 169 (465)
..+.+.|+.++|...++.+.+.+ +.+...+..++..+...|++++|..+++.+ ..+.+..+|..+...+...|++++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 66666777777777777766654 344555666677777777777777777776 233455667777777777777777
Q ss_pred HHHHHHHhhc---CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHc
Q 012360 170 AREVFDEIVD---KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246 (465)
Q Consensus 170 a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 246 (465)
|...|+.+.. .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|+++.|..+++.+.+.
T Consensus 620 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 620 AVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777776633 245566667777777777777777777776642 234566666777777777777777777777665
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012360 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTD--CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324 (465)
Q Consensus 247 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 324 (465)
. +.+...+..+...+...|++++|.+.|+.+. .|+..++..++..+.+.|++++|.+.++++.+.. +.+...+..+
T Consensus 699 ~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~l 776 (899)
T TIGR02917 699 H-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTAL 776 (899)
T ss_pred C-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4 4455666667777777777777777777654 2444566667777777777777777777776652 3345667777
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCCh
Q 012360 325 LAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEF 402 (465)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 402 (465)
...|...|++++|...|+++.+. .+++...+..+...+...|+ ++|..+++++.. +.++.++..++..+...|++
T Consensus 777 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 853 (899)
T TIGR02917 777 AELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEA 853 (899)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 77777777777777777777753 34566677777777777777 667777776543 23555666777777777888
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 403 DLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 403 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
++|.++++++++.+|.++.++..++.++.+.|++++|.+++++|.
T Consensus 854 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 854 DRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888888888888777777777778888888888888888777764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-30 Score=264.02 Aligned_cols=423 Identities=13% Similarity=0.060 Sum_probs=313.1
Q ss_pred hhhHHHHHHHccCChHHHHHHhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcc
Q 012360 20 VGNSLIHFYGRMALFTDARVLFDKMP---FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96 (465)
Q Consensus 20 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 96 (465)
....++..+.+.|++++|..+++.+. +++..+|..+...+...|++++|...|+++.+.. +.+...+..+...+..
T Consensus 433 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 511 (899)
T TIGR02917 433 ADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQ 511 (899)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHH
Confidence 34445555556666666666665554 2345566667777777777777777777766542 2234455556666667
Q ss_pred hhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh--CCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 012360 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM--GSRRNIVSLNILINGYIDMELVDLAREVF 174 (465)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 174 (465)
.|++++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...++++ ..+.+...+..++..+...|++++|.+++
T Consensus 512 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred CCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 777777777777776654 345566667777777777777777777776 22334556667777777778888888777
Q ss_pred HHhhc---CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCC
Q 012360 175 DEIVD---KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD 251 (465)
Q Consensus 175 ~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 251 (465)
+.+.. .+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 668 (899)
T TIGR02917 591 NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDN 668 (899)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC
Confidence 77743 356677777888888888888888888877653 2345566677777777888888888888877654 445
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012360 252 AFVKTALIDMYSKCGSLEEALVTFYKTDC---KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328 (465)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 328 (465)
..++..+...+...|++++|..+++.+.. .+...+..+...+...|++++|...|+++... .|+..++..+..++
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 746 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHH
Confidence 66777788888888888888888877653 35567777788888888888888888888876 45556777788888
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHH
Q 012360 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGK 406 (465)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 406 (465)
.+.|++++|.+.++++.+ ..+.+...+..+...|...|++++|.+.|+++.. ++++.+++.++..+...|+ ++|+
T Consensus 747 ~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~ 823 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRAL 823 (899)
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHH
Confidence 888999999998888886 3456777888888899999999999999988754 3467778888999999998 8899
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcC
Q 012360 407 KVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 407 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 451 (465)
..++++.+..|+++..+..++.++...|++++|.++++++.+.+.
T Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 824 EYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999899999999999999999999999887654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-22 Score=208.48 Aligned_cols=416 Identities=12% Similarity=0.015 Sum_probs=326.4
Q ss_pred HHHHHHccCChHHHHHHhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchh---hHH---------
Q 012360 24 LIHFYGRMALFTDARVLFDKMP---FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKI---TLV--------- 88 (465)
Q Consensus 24 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~--------- 88 (465)
....+...|++++|+..|++.. +.+...+..+..++.+.|++++|+..|++..+.. |+.. .+.
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHH
Confidence 3456778899999999999876 3367788999999999999999999999998753 3321 111
Q ss_pred ---HHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCC-chhHHHHHHHHHh
Q 012360 89 ---ILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRRN-IVSLNILINGYID 163 (465)
Q Consensus 89 ---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~ 163 (465)
.....+.+.|++++|...++++.+.. +.+...+..+..++...|++++|++.|++. ...|+ ..++..+...+.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 22345678899999999999999875 445667778899999999999999999998 44454 455666666664
Q ss_pred cCChHHHHHHHHHhhcCC------------hHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccch
Q 012360 164 MELVDLAREVFDEIVDKD------------IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231 (465)
Q Consensus 164 ~~~~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 231 (465)
.++.++|..+++.+.... ...+..+...+...|++++|++.|++.++... -+...+..+...+.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 567899999988764321 22455667788899999999999999998532 24566777888899999
Q ss_pred hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC----h---------hhHHHHHHHHHHcCC
Q 012360 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD----V---------VTWTTMIEGLANYGL 298 (465)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---------~~~~~l~~~~~~~~~ 298 (465)
++++|...++++.+.. +.+...+..+...+...++.++|...++.+.... . ..+..+...+...|+
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999998754 3345555556667788999999999999876421 1 112345667888999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 012360 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIK 378 (465)
Q Consensus 299 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 378 (465)
.++|..+++. .+++...+..+...+.+.|++++|+..|+++.+. .+.+...+..++..|...|++++|.+.++
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999872 2445567778889999999999999999999963 34568888999999999999999999999
Q ss_pred hCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc------hhHHHHHHHHhhcCChHHHHHHHHHHH-Hh
Q 012360 379 IMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH------EAYVLLSNFYALEGHWTEVAEARRNMK-EL 449 (465)
Q Consensus 379 ~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~ 449 (465)
.+.. .| +...+..+..++...|++++|.++++++++..|+++ ..+..++..+...|++++|...+++.. ..
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 8765 33 556677788899999999999999999999876543 356777999999999999999999775 34
Q ss_pred cCC
Q 012360 450 QTR 452 (465)
Q Consensus 450 ~~~ 452 (465)
++.
T Consensus 742 ~~~ 744 (1157)
T PRK11447 742 GIT 744 (1157)
T ss_pred CCC
Confidence 443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-21 Score=202.51 Aligned_cols=434 Identities=12% Similarity=0.032 Sum_probs=271.1
Q ss_pred chhHHHHHhccCCcchhhhHHHHHHHccCChHHHHHHhccCCC--CCc-ccH----------------HHHHHHHHhcCC
Q 012360 4 GLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF--RDV-GSW----------------NTLMSIYNDFSD 64 (465)
Q Consensus 4 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~----------------~~l~~~~~~~~~ 64 (465)
+.++.+... -+.|+.++..++..+.+.|+.++|.+.++++.+ |+. ..+ ..+...+.+.|+
T Consensus 49 ~~l~kl~~~-~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~ 127 (1157)
T PRK11447 49 QSLYRLELI-DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGR 127 (1157)
T ss_pred HHHHHHHcc-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 344444433 234677788888888888888888888887762 222 211 223346777888
Q ss_pred hhHHHHHHHHHHHcCCCCchh-hHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHH
Q 012360 65 SGEVLILFKQLIFEGIVADKI-TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFD 143 (465)
Q Consensus 65 ~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 143 (465)
+++|+..|+.+...+ +|+.. ............|+.++|.+.++.+.+.. +.+...+..+...+...|+.++|+..++
T Consensus 128 ~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~ 205 (1157)
T PRK11447 128 TEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLE 205 (1157)
T ss_pred HHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 888888888887643 33322 11111122234578888888888888764 4455667778888888888888888887
Q ss_pred hhCCCCC-----------------------------------chhH---------------------HHHHHHHHhcCCh
Q 012360 144 EMGSRRN-----------------------------------IVSL---------------------NILINGYIDMELV 167 (465)
Q Consensus 144 ~~~~~~~-----------------------------------~~~~---------------------~~l~~~~~~~~~~ 167 (465)
++...|. .... ......+...|++
T Consensus 206 ~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~ 285 (1157)
T PRK11447 206 QMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQG 285 (1157)
T ss_pred HHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCH
Confidence 7611110 0000 0112344567888
Q ss_pred HHHHHHHHHhhc--C-ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHH------------HHHHHHhccch
Q 012360 168 DLAREVFDEIVD--K-DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD-EEVM------------VSVLSACSSLS 231 (465)
Q Consensus 168 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~------------~~ll~~~~~~~ 231 (465)
++|+..|++... | +...+..+...+.+.|++++|+..|++..+...... ...+ ......+.+.|
T Consensus 286 ~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g 365 (1157)
T PRK11447 286 GKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKAN 365 (1157)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCC
Confidence 888888887744 3 667778888888888888888888888776432211 1111 11233456778
Q ss_pred hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhhHH---------------------
Q 012360 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--K-DVVTWT--------------------- 287 (465)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~--------------------- 287 (465)
++++|...++++.+.. +.+...+..+..++...|++++|++.|+++.+ | +...+.
T Consensus 366 ~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l 444 (1157)
T PRK11447 366 NLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASL 444 (1157)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 8888888888887764 34556667777888888888888888876552 2 222222
Q ss_pred ---------------------HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 288 ---------------------TMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 288 ---------------------~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
.+...+...|++++|...+++..+. .|+ ...+..+...+.+.|++++|...++++.
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1233445678888888888888876 454 5567778888888999999999888887
Q ss_pred cCCCCCCChhhHHHH--------------------------------------------HHHHHhcCCHHHHHHHHHhCC
Q 012360 346 GVYRVQPTIEHFVCL--------------------------------------------VDLLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 346 ~~~~~~~~~~~~~~l--------------------------------------------~~~~~~~g~~~~A~~~~~~~~ 381 (465)
+.. +.+...+..+ ...+...|+.++|.++++.-
T Consensus 523 ~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~- 599 (1157)
T PRK11447 523 QQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ- 599 (1157)
T ss_pred HcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC-
Confidence 431 2222222222 22233344444444444411
Q ss_pred CCCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 382 AEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 382 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
++++..+..+...+.+.|++++|+..|+++++..|+++..+..++.++...|++++|++.++...
T Consensus 600 -p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 600 -PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 12334455566666666777777777777777667666666666666666666666666666554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-22 Score=177.32 Aligned_cols=378 Identities=13% Similarity=0.097 Sum_probs=314.8
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchh-hHHHHHHH
Q 012360 50 GSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLN-MENALLLM 128 (465)
Q Consensus 50 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~ 128 (465)
.+|+.+...+-..|++++|+.+|+.+.+.. +-....|..+..++...|+.+.|.+.|.+.++.+ |+.. ..+.+...
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnL 193 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHH
Confidence 578888999999999999999999998853 2245688889999999999999999999988764 4433 33445556
Q ss_pred HHhCCChHHHHHHHHhh-CCCC-CchhHHHHHHHHHhcCChHHHHHHHHHhhcCC---hHHHHHHHHHHHHcCChhHHHH
Q 012360 129 YAKCKEMDEALRLFDEM-GSRR-NIVSLNILINGYIDMELVDLAREVFDEIVDKD---IVLWRSMMHGCVKAKQPEEALE 203 (465)
Q Consensus 129 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~ 203 (465)
+-..|+.++|...+.+. ...| -.++|+.|...+-..|+...|+..|++.++-| ...|-.|...|...+.++.|..
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHH
Confidence 66789999999988776 4455 45689999999999999999999999986543 3678889999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--
Q 012360 204 LFKKMIDEGVTPD-EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC-- 280 (465)
Q Consensus 204 ~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 280 (465)
.|.+.... .|+ ...+..+...|..+|+.+.|+..|++.++.. +.-+..|+.+..++...|++.+|.+.|.+...
T Consensus 274 ~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 274 CYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 99988774 454 4566777777889999999999999998864 33467899999999999999999999988653
Q ss_pred C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-hhhH
Q 012360 281 K-DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT-IEHF 357 (465)
Q Consensus 281 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~ 357 (465)
| ...+.+.|...|...|.+++|..+|....+- .|. ....+.|...|-++|++++|+..|+++. .+.|+ ...+
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~ 425 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADAL 425 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHH
Confidence 3 4568888999999999999999999988765 665 4678899999999999999999999998 45675 6788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-CCC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCC
Q 012360 358 VCLVDLLSRAGLLYQAEEFIKIMP-AED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435 (465)
Q Consensus 358 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 435 (465)
+.+...|...|+.+.|...+.+.. .+| -....+.|...|...|+..+|+..|+.++++.|+.+.+|-.++.++.-..+
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhc
Confidence 999999999999999999888754 355 445788899999999999999999999999999999999999888776666
Q ss_pred hHH
Q 012360 436 WTE 438 (465)
Q Consensus 436 ~~~ 438 (465)
|.+
T Consensus 506 w~D 508 (966)
T KOG4626|consen 506 WTD 508 (966)
T ss_pred ccc
Confidence 655
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-21 Score=190.02 Aligned_cols=250 Identities=13% Similarity=0.037 Sum_probs=202.3
Q ss_pred cCChhHHHHHHHHHHHcC-CCC-CHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 012360 195 AKQPEEALELFKKMIDEG-VTP-DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL 272 (465)
Q Consensus 195 ~g~~~~a~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 272 (465)
.+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...++...+.. +.....|..+..++...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 468899999999998764 233 34566777777888999999999999998864 334667888899999999999999
Q ss_pred HHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 012360 273 VTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348 (465)
Q Consensus 273 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 348 (465)
..|++.. +.+...|..+...+...|++++|...|++..+. .| +...+..+..++.+.|++++|+..|++...
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-- 461 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK-- 461 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 9998765 335778889999999999999999999999887 45 456777888899999999999999999985
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCc-cch-------HHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 012360 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDK-FIS-------YKALLSACITYSEFDLGKKVANNMMKLGNQS 419 (465)
Q Consensus 349 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~-------~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 419 (465)
..+.+...++.+..++...|++++|.+.|++... .|+ ... ++..+..+...|++++|+++++++++.+|++
T Consensus 462 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 462 NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 3345678888999999999999999999988643 231 111 1222223334699999999999999999999
Q ss_pred chhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 420 HEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 420 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
...+..++.++.+.|++++|..++++..+.
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888999999999999999999999987654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=180.03 Aligned_cols=417 Identities=13% Similarity=0.076 Sum_probs=336.1
Q ss_pred HHHHHHccCChHHHHHHhccCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhh
Q 012360 24 LIHFYGRMALFTDARVLFDKMPFR---DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKL 100 (465)
Q Consensus 24 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 100 (465)
|.+-.-+.|++++|++.-..+-.. +....-.+-.++.+..+.+....--....+.. +.-..+|..+.+.+-..|++
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchH
Confidence 344444557777776655444322 22223333345566666666555444444432 33456899999999999999
Q ss_pred hhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCCchhHH-HHHHHHHhcCChHHHHHHHHHhh
Q 012360 101 HYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRRNIVSLN-ILINGYIDMELVDLAREVFDEIV 178 (465)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~ 178 (465)
+.|+..++.+++.. +..+..|..+..++...|+.+.|...|.+. ...|+..... .+...+...|++++|...+-+.+
T Consensus 133 ~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi 211 (966)
T KOG4626|consen 133 QDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAI 211 (966)
T ss_pred HHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHH
Confidence 99999999999875 456778999999999999999999998776 7788766544 45556667899999999998775
Q ss_pred cC---ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhH
Q 012360 179 DK---DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD-EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFV 254 (465)
Q Consensus 179 ~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 254 (465)
+. -...|..|...+..+|+...|+..|++..+. .|+ ...|..|-..|...+.++.|...|.+..... +.....
T Consensus 212 ~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a 288 (966)
T KOG4626|consen 212 ETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVA 288 (966)
T ss_pred hhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchhh
Confidence 53 2467999999999999999999999999884 454 4577788888888999999999998887753 345677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC--CC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 012360 255 KTALIDMYSKCGSLEEALVTFYKTDC--KD-VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLAACRH 330 (465)
Q Consensus 255 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~ 330 (465)
+..+...|...|.++.|+..|++..+ |+ +..|+.|..++-..|++.+|.+.+.+.... .|+ ....+.|...+..
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYRE 366 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHH
Confidence 88899999999999999999998764 43 468999999999999999999999998876 555 5688899999999
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHH
Q 012360 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKV 408 (465)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~ 408 (465)
.|.+++|..+|....+. .+.-...++.|...|.+.|++++|...+++... +| -...|+.++..|...|+.+.|++.
T Consensus 367 ~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~ 444 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQC 444 (966)
T ss_pred hccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHH
Confidence 99999999999999853 233467789999999999999999999998754 55 456899999999999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 409 ANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 409 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
+.+++..+|.-..+++.|+..|..+|+..+|+.-++...+.
T Consensus 445 y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 445 YTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999977654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.6e-22 Score=182.55 Aligned_cols=301 Identities=15% Similarity=0.072 Sum_probs=200.9
Q ss_pred HHHHHhCCChHHHHHHHHhh-CCCCC-chhHHHHHHHHHhcCChHHHHHHHHHhhcCC-------hHHHHHHHHHHHHcC
Q 012360 126 LLMYAKCKEMDEALRLFDEM-GSRRN-IVSLNILINGYIDMELVDLAREVFDEIVDKD-------IVLWRSMMHGCVKAK 196 (465)
Q Consensus 126 ~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~g 196 (465)
...+...|++++|...|+++ ...|+ ..++..+...+...|++++|..+++.+.... ...+..++..|.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 33455667777777777777 33443 3456666666667777777777666653321 134556666666666
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 012360 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276 (465)
Q Consensus 197 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 276 (465)
++++|..+|+++.+.. +++..++..++..+.+.|++++|...++.+.+.+..+....
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 6666666666666542 23445566666666666666666666666655432111000
Q ss_pred cCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhh
Q 012360 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356 (465)
Q Consensus 277 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 356 (465)
....+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.++++++... .......+
T Consensus 179 -----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~ 251 (389)
T PRK11788 179 -----IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEV 251 (389)
T ss_pred -----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHH
Confidence 01123445666777788888888888877652 223456677778888888888888888888753 11112456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhh---
Q 012360 357 FVCLVDLLSRAGLLYQAEEFIKIMPA-EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL--- 432 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 432 (465)
+..++.+|...|++++|...++++.. .|+...+..++..+.+.|++++|..+++++++..|++.. +..+...+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~ 330 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAE 330 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccC
Confidence 67788888888888888888887654 566666788888888899999999999999988888775 5555555443
Q ss_pred cCChHHHHHHHHHHHHhcCCCCCCC
Q 012360 433 EGHWTEVAEARRNMKELQTRKKPGN 457 (465)
Q Consensus 433 ~g~~~~a~~~~~~~~~~~~~~~~~~ 457 (465)
.|+.+++..++++|.+.++.|+|.+
T Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 331 EGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred CccchhHHHHHHHHHHHHHhCCCCE
Confidence 4588899999999998888888864
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-19 Score=175.76 Aligned_cols=432 Identities=10% Similarity=-0.029 Sum_probs=293.8
Q ss_pred ccchhHHHHHhccCCcchhhhHHHHH--------HHccCChHHHHHHhccCCCCC--cccHHHH-HHHHHhcCChhHHHH
Q 012360 2 GKGLHAHVTKTALDSDIYVGNSLIHF--------YGRMALFTDARVLFDKMPFRD--VGSWNTL-MSIYNDFSDSGEVLI 70 (465)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~~--~~~~~~l-~~~~~~~~~~~~a~~ 70 (465)
|-.+++++.... +-+..++..+... |.+.+...+++. .....|+ ....... ...|.+.|++++|++
T Consensus 127 A~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 127 SVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 345667777654 4456666666665 777766666666 3333333 3334444 889999999999999
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHhcc-hhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh----
Q 012360 71 LFKQLIFEGIVADKITLVILFSACAR-LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM---- 145 (465)
Q Consensus 71 ~~~~m~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 145 (465)
++.++.+.+. .+......+..++.. .++ +.+..++.. ..+.+..+...++..|.+.|+.++|.++++++
T Consensus 204 lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 204 LYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 9999998763 334445566666666 356 666666442 33467778889999999999999999999988
Q ss_pred CCCCCchhHHHH------------------------------HHHHH---------------------------------
Q 012360 146 GSRRNIVSLNIL------------------------------INGYI--------------------------------- 162 (465)
Q Consensus 146 ~~~~~~~~~~~l------------------------------~~~~~--------------------------------- 162 (465)
...|...+|.-+ +..+.
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 357 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRN 357 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCc
Confidence 222333333222 12222
Q ss_pred ------------------------------hcCChHHHHHHHHHhhc-C-----ChHHHHHHHHHHHHcCC---hhHHHH
Q 012360 163 ------------------------------DMELVDLAREVFDEIVD-K-----DIVLWRSMMHGCVKAKQ---PEEALE 203 (465)
Q Consensus 163 ------------------------------~~~~~~~a~~~~~~~~~-~-----~~~~~~~l~~~~~~~g~---~~~a~~ 203 (465)
+.|+.++|.++|+.... + +....+-++..|.+.+. ..++..
T Consensus 358 ~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 358 KAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 33444555555544422 1 11223344444444443 222211
Q ss_pred H----------------------HHHHHHc-CC-CC--CHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHH
Q 012360 204 L----------------------FKKMIDE-GV-TP--DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257 (465)
Q Consensus 204 ~----------------------~~~~~~~-~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 257 (465)
+ ++..... +. ++ +...+..+..++.. ++.++|...+....... |+......
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~ 514 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRA 514 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHH
Confidence 1 1111110 11 12 34444444444444 67777888777766653 45444444
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCH
Q 012360 258 LIDMYSKCGSLEEALVTFYKTDC--KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE-ATFVSVLAACRHSGLI 334 (465)
Q Consensus 258 l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~ 334 (465)
+...+...|++++|...|+++.. ++...+..+..++.+.|++++|...+++..+.. |+. ..+..+.......|++
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCH
Confidence 55556789999999999987653 444556677788899999999999999998763 443 3344444555567999
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHH
Q 012360 335 TEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNM 412 (465)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 412 (465)
++|...+++..+ ..|+...+..+..++.+.|++++|...+++... .| +...+..+..++...|++++|+..++++
T Consensus 593 ~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 593 ELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred HHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999984 357788899999999999999999999998755 44 6677888999999999999999999999
Q ss_pred HHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 413 MKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 413 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
++..|+++.++..++.++...|++++|+..+++..+..
T Consensus 670 L~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 670 HKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999886543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-19 Score=176.91 Aligned_cols=400 Identities=10% Similarity=-0.009 Sum_probs=239.8
Q ss_pred CCcchhhhHHHHHHHccCChHHHHHHhccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHH
Q 012360 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPF---RDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILF 91 (465)
Q Consensus 15 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 91 (465)
+.++....-.+......|+.++|+++|+.... .+...+..+...+...|++++|..+|++..+.. +.+...+..+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 44555666667777788888888888887663 233357788888888888888888888877652 23445566677
Q ss_pred HHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCC-chhHHHHHHHHHhcCChHH
Q 012360 92 SACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRRN-IVSLNILINGYIDMELVDL 169 (465)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~ 169 (465)
..+...|++++|...++.+.+.. +.+.. +..+..++...|+.++|+..++++ ...|+ ...+..+...+...+..+.
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 77778888888888888888763 34444 777777888888888888888887 44554 3445566667777778888
Q ss_pred HHHHHHHhhcCChH--------HHHHHHHHHHH-----cCCh---hHHHHHHHHHHHc-CCCCCHH-HHH----HHHHHh
Q 012360 170 AREVFDEIVDKDIV--------LWRSMMHGCVK-----AKQP---EEALELFKKMIDE-GVTPDEE-VMV----SVLSAC 227 (465)
Q Consensus 170 a~~~~~~~~~~~~~--------~~~~l~~~~~~-----~g~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~ll~~~ 227 (465)
|++.++.... ++. ....++..... .+++ ++|++.++.+.+. ...|+.. .+. ..+..+
T Consensus 169 Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 169 ALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 8887776654 211 11222222211 1223 5666677666643 1222211 111 112333
Q ss_pred ccchhhHhHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-------hhhHHHHHHHHHHcCCh
Q 012360 228 SSLSNLQYGRLVHRFILQNNIT-QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD-------VVTWTTMIEGLANYGLG 299 (465)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~ 299 (465)
...|++++|...|+.+.+.+.+ |+ .....+..+|...|++++|+..|+++...+ ......+..++...|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 4556777777777777665422 21 122224556666777777777766543211 12334445556666777
Q ss_pred HHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHH
Q 012360 300 NEALRVFYQMERKGI-----------KPNE---ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365 (465)
Q Consensus 300 ~~a~~~~~~m~~~g~-----------~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 365 (465)
++|..+++.+.+... .|+. ..+..+...+...|+.++|+..++++.. ..+.+...+..+...+.
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 777777666665410 1121 1233445556666666666666666654 22334555666666666
Q ss_pred hcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 366 RAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 366 ~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
..|++++|++.++++.. .| +...+...+..+...|++++|+.+++++++..|+++.
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 66666666666665543 33 3444555555566666666666666666666666664
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-19 Score=173.57 Aligned_cols=356 Identities=9% Similarity=-0.027 Sum_probs=180.3
Q ss_pred HccCChHHHHHHhccCCCC------CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhh
Q 012360 29 GRMALFTDARVLFDKMPFR------DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHY 102 (465)
Q Consensus 29 ~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 102 (465)
.+..+++.---+|...++. +..-...++..+.+.|++++|..+++........ +...+..++.+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 3455555555555544421 2333445556666777777777777776665322 22334444455556677777
Q ss_pred hhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCC-chhHHHHHHHHHhcCChHHHHHHHHHhhc-
Q 012360 103 GKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRRN-IVSLNILINGYIDMELVDLAREVFDEIVD- 179 (465)
Q Consensus 103 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 179 (465)
|...++.+.+.. +.+...+..+...+...|++++|...+++. ...|+ ...+..+...+...|++++|...++.+..
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 777777766653 334445566666666667777777666665 33333 33455555556666666666665554421
Q ss_pred -C-ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHH
Q 012360 180 -K-DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257 (465)
Q Consensus 180 -~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 257 (465)
| +...+..+ ..+...|++++|...++.+.+....++......+..++...|++++|...++.+.+.. +.+...+..
T Consensus 174 ~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~ 251 (656)
T PRK15174 174 VPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRS 251 (656)
T ss_pred CCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 2 22222222 2345556666666666555544222223333333444455555555555555555443 223334444
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 012360 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGLITE 336 (465)
Q Consensus 258 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~ 336 (465)
+...+...|++++|. .+|...+++..+. .|+ ...+..+...+...|++++
T Consensus 252 Lg~~l~~~G~~~eA~---------------------------~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~e 302 (656)
T PRK15174 252 LGLAYYQSGRSREAK---------------------------LQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEK 302 (656)
T ss_pred HHHHHHHcCCchhhH---------------------------HHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 444444444444310 0245555555543 232 3445555555555555555
Q ss_pred HHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCccch-HHHHHHHHHhcCChHHHHHHHHHHHH
Q 012360 337 GCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDKFIS-YKALLSACITYSEFDLGKKVANNMMK 414 (465)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (465)
|+..++++... .+.+...+..+..++.+.|++++|...++.+.. .|+... +..+..++...|++++|+..|+++.+
T Consensus 303 A~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 303 AIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555555532 122333444555555555555555555555432 232222 22234445555566666666666555
Q ss_pred hCCCC
Q 012360 415 LGNQS 419 (465)
Q Consensus 415 ~~p~~ 419 (465)
..|++
T Consensus 381 ~~P~~ 385 (656)
T PRK15174 381 ARASH 385 (656)
T ss_pred hChhh
Confidence 55543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-20 Score=173.88 Aligned_cols=284 Identities=13% Similarity=0.053 Sum_probs=143.0
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccc---hhhHHHHHHHHHhCCC
Q 012360 58 IYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM---LNMENALLLMYAKCKE 134 (465)
Q Consensus 58 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~ 134 (465)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3455666777777777766643 22334555666666666666666666666665432111 2345556666666666
Q ss_pred hHHHHHHHHhh-C-CCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCC--------hHHHHHHHHHHHHcCChhHHHHH
Q 012360 135 MDEALRLFDEM-G-SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKD--------IVLWRSMMHGCVKAKQPEEALEL 204 (465)
Q Consensus 135 ~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~a~~~ 204 (465)
+++|..+|+++ . .+++..++..++..+.+.|++++|.+.++.+.+.+ ...+..+...+.+.|++++|.+.
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 66666666666 1 12234455555555555666666655555553311 11233444455555566666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCC
Q 012360 205 FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD--CKD 282 (465)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~ 282 (465)
|+++.+.. +.+...+..+...+.+.|++++|..+++++.+.+......++..++.+|...|++++|...++++. .|+
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG 281 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 65555432 112334444445555555555555555555543221112334444455555555555555544433 233
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHhh
Q 012360 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH---SGLITEGCQLFRRMG 345 (465)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 345 (465)
...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.++++.+++++.
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 333344444455555555555555544443 3444444444444332 234445555555444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-19 Score=175.92 Aligned_cols=391 Identities=9% Similarity=-0.016 Sum_probs=298.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHh
Q 012360 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAK 131 (465)
Q Consensus 52 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (465)
-.-.+.+....|+.++|++++.+..... +.+...+..+...+...|++++|..+++..++.. +.+...+..++.++..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3445667788999999999999997632 3445568888999999999999999999998874 4456667788899999
Q ss_pred CCChHHHHHHHHhh-CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhc--C-ChHHHHHHHHHHHHcCChhHHHHHHHH
Q 012360 132 CKEMDEALRLFDEM-GSRRNIVSLNILINGYIDMELVDLAREVFDEIVD--K-DIVLWRSMMHGCVKAKQPEEALELFKK 207 (465)
Q Consensus 132 ~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 207 (465)
.|++++|+..+++. ...|+...+..+...+...|+.++|+..+++... | +...+..+...+...|..+.|++.++.
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 99999999999998 4455433388888899999999999999999854 3 556667788888899999999999987
Q ss_pred HHHcCCCCCH------HHHHHHHHHh-----ccchhh---HhHHHHHHHHHHc-CCCCChh-HH----HHHHHHHHhcCC
Q 012360 208 MIDEGVTPDE------EVMVSVLSAC-----SSLSNL---QYGRLVHRFILQN-NITQDAF-VK----TALIDMYSKCGS 267 (465)
Q Consensus 208 ~~~~~~~~~~------~~~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~ 267 (465)
... .|+. .....++... ...+++ ++|...++.+.+. ...|+.. .+ ...+..+...|+
T Consensus 176 ~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~ 252 (765)
T PRK10049 176 ANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDR 252 (765)
T ss_pred CCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh
Confidence 654 2321 0112222222 222344 7788888888764 2223221 11 111334567799
Q ss_pred HHHHHHHHhcCCCCC---hh-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHH
Q 012360 268 LEEALVTFYKTDCKD---VV-TWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-----EATFVSVLAACRHSGLITEGC 338 (465)
Q Consensus 268 ~~~a~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~~~~~~a~ 338 (465)
+++|+..|+.+...+ +. .-..+...|...|++++|..+|+++.+. .|. ......+..++...|++++|.
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 999999999987532 21 2233577899999999999999998765 332 245566777889999999999
Q ss_pred HHHHHhhcCCC----------CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChH
Q 012360 339 QLFRRMGGVYR----------VQPT---IEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFD 403 (465)
Q Consensus 339 ~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 403 (465)
.+++.+..... -.|+ ...+..+...+...|++++|++.++++.. +.+...+..++..+...|+++
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPR 410 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 99999985311 0122 23455678889999999999999998754 346778899999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 404 LGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 404 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
+|++.++++++..|++...+..++..+...|++++|..+++++.+.
T Consensus 411 ~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 411 AAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-19 Score=170.72 Aligned_cols=320 Identities=12% Similarity=-0.011 Sum_probs=219.4
Q ss_pred HHHHHHhCCChHHHHHHHHhh-CCCC-CchhHHHHHHHHHhcCChHHHHHHHHHhhc--C-ChHHHHHHHHHHHHcCChh
Q 012360 125 LLLMYAKCKEMDEALRLFDEM-GSRR-NIVSLNILINGYIDMELVDLAREVFDEIVD--K-DIVLWRSMMHGCVKAKQPE 199 (465)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~ 199 (465)
++..+.+.|++++|..+++.. ...| +...+..++.+....|++++|...|+++.. | +...+..+...+...|+++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~ 127 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYA 127 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Confidence 344444555555555555544 2222 233344444444455555555555555522 2 3445566666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 012360 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD 279 (465)
Q Consensus 200 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 279 (465)
+|...++++.+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++.+.
T Consensus 128 ~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 128 TVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence 6666666666531 223445555566666666777776666665554322 22222222 23566677777777776644
Q ss_pred CC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHhhcCCCCC
Q 012360 280 CK----DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE----GCQLFRRMGGVYRVQ 351 (465)
Q Consensus 280 ~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~ 351 (465)
+. +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++ |...++++.+. .+
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P 281 (656)
T PRK15174 205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NS 281 (656)
T ss_pred hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CC
Confidence 32 22334445677888999999999999988763 3345677888899999999986 89999999853 34
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 012360 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429 (465)
Q Consensus 352 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 429 (465)
.+...+..+...+...|++++|...+++... .| +...+..+..++...|++++|+..++++.+.+|.+...+..++.+
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~a 361 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAA 361 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 4677889999999999999999999998754 34 556778889999999999999999999999999988767778899
Q ss_pred HhhcCChHHHHHHHHHHHHhc
Q 012360 430 YALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 430 ~~~~g~~~~a~~~~~~~~~~~ 450 (465)
+...|++++|...+++..+..
T Consensus 362 l~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 362 LLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhC
Confidence 999999999999999876553
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-18 Score=167.77 Aligned_cols=320 Identities=10% Similarity=-0.013 Sum_probs=245.0
Q ss_pred HHHHHHHhCCChHHHHHHHHhh-CCCCCc----hhHHHHHHHHHhcCC---hHHHHHH----------------------
Q 012360 124 ALLLMYAKCKEMDEALRLFDEM-GSRRNI----VSLNILINGYIDMEL---VDLAREV---------------------- 173 (465)
Q Consensus 124 ~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~---~~~a~~~---------------------- 173 (465)
.+.-...+.|+.++|.++|+.. ..+++. ..-.-++..|.+.+. ..++..+
T Consensus 381 q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (987)
T PRK09782 381 QLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADN 460 (987)
T ss_pred HHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhh
Confidence 3344456788999999999988 213322 233456667766555 2222222
Q ss_pred ---HHHhhc---C--ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHH
Q 012360 174 ---FDEIVD---K--DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245 (465)
Q Consensus 174 ---~~~~~~---~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (465)
+..... + +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...++.+..
T Consensus 461 ~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 461 CPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISL 537 (987)
T ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 222221 2 55677778877776 8999999988888774 46655544445556789999999999999866
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 012360 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT---TMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV 322 (465)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 322 (465)
. +|+...+..+..++.+.|+.++|...++.....++.... .+.......|++++|...+++..+. .|+...+.
T Consensus 538 ~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~ 613 (987)
T PRK09782 538 H--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYV 613 (987)
T ss_pred c--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 4 344455667788899999999999999877654333333 3333444559999999999999987 67888899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcC
Q 012360 323 SVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYS 400 (465)
Q Consensus 323 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~ 400 (465)
.+..++.+.|++++|+..++++... .+.+...+..+..++...|++++|+..+++... .| ++..+..+..++...|
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999953 344677888999999999999999999998754 34 6778999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCC
Q 012360 401 EFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTR 452 (465)
Q Consensus 401 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 452 (465)
++++|+..++++++..|++..+....++...+..+++.|.+-+++.-...+.
T Consensus 692 d~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 692 DMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred CHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 9999999999999999999999999999999999999999988876554443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.4e-18 Score=163.35 Aligned_cols=389 Identities=8% Similarity=-0.020 Sum_probs=269.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHh
Q 012360 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAK 131 (465)
Q Consensus 52 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (465)
+......+.+.|++++|+..|++.... .|+...|..+..++...|++++|.+.++..++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445667788889999999999998764 5777888888888999999999999999988864 4456678888899999
Q ss_pred CCChHHHHHHHHhh-CCCC-CchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 012360 132 CKEMDEALRLFDEM-GSRR-NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209 (465)
Q Consensus 132 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 209 (465)
.|++++|+..|... ...+ +......++..+........+...++.-. ++...+..+.. |...........-+....
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 99999998888765 1111 11111222222222111223333332221 12222222222 222222222222222211
Q ss_pred HcCCCCCH-HHHHHHHH---HhccchhhHhHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C
Q 012360 210 DEGVTPDE-EVMVSVLS---ACSSLSNLQYGRLVHRFILQNN--ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--K 281 (465)
Q Consensus 210 ~~~~~~~~-~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 281 (465)
+ ..+.. ..+..+.. -....+++++|...|+...+.+ .+.....+..+..++...|++++|+..|++... |
T Consensus 285 ~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 362 (615)
T TIGR00990 285 E--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362 (615)
T ss_pred c--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 1 11111 01111110 1134578999999999998865 233456788888999999999999999998653 3
Q ss_pred -ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHH
Q 012360 282 -DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360 (465)
Q Consensus 282 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 360 (465)
+...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|+..|++..+. .+.+...+..+
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~l 439 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQL 439 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHH
Confidence 35578888899999999999999999998762 234678889999999999999999999999853 34467778889
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHH-------HHHHHh
Q 012360 361 VDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVL-------LSNFYA 431 (465)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-------l~~~~~ 431 (465)
..++.+.|++++|...+++... .| ++..++.+...+...|++++|++.|++++++.|.....+.. .+..+.
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 9999999999999999998654 34 67788999999999999999999999999998865432221 122334
Q ss_pred hcCChHHHHHHHHHHHHhc
Q 012360 432 LEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 432 ~~g~~~~a~~~~~~~~~~~ 450 (465)
..|++++|..++++..+..
T Consensus 520 ~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 520 WKQDFIEAENLCEKALIID 538 (615)
T ss_pred HhhhHHHHHHHHHHHHhcC
Confidence 4699999999999876653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.2e-17 Score=156.82 Aligned_cols=421 Identities=10% Similarity=-0.006 Sum_probs=295.9
Q ss_pred HHHHHccCChHHHHHHhccCCCCCcc---cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhh
Q 012360 25 IHFYGRMALFTDARVLFDKMPFRDVG---SWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLH 101 (465)
Q Consensus 25 ~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 101 (465)
+-...+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.... ..........+...+...|+++
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 34457789999999999988743322 2338888888899999999999998721 1112222333355777889999
Q ss_pred hhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhc-
Q 012360 102 YGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRRNIVSLNILINGYIDMELVDLAREVFDEIVD- 179 (465)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 179 (465)
+|.++++.+.+.. +.+...+..++..+...++.++|++.++++ ...|+...+..++..+...++..+|++.++++.+
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 9999999999886 344666678888899999999999999998 5567766664454455456666669999998844
Q ss_pred -C-ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH------HHHHHHHh-----ccchhh---HhHHHHHHHH
Q 012360 180 -K-DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV------MVSVLSAC-----SSLSNL---QYGRLVHRFI 243 (465)
Q Consensus 180 -~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~ll~~~-----~~~~~~---~~a~~~~~~~ 243 (465)
| +...+..++.++.+.|-...|.++..+-... +.+.... ....++.- ....++ +.|..-++.+
T Consensus 199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 3 5677788888889999888888777654321 1111110 11111111 112233 3344444444
Q ss_pred HHc-CCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHhcCCCC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012360 244 LQN-NITQDA-----FVKTALIDMYSKCGSLEEALVTFYKTDCK----DVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313 (465)
Q Consensus 244 ~~~-~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 313 (465)
... +..|.. .+..-.+-++...|+..++++.|+.+..+ ...+-..+..+|...+++++|..+++.+....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 442 111221 12234456677788999999999988743 33456678888999999999999999986642
Q ss_pred -----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC----------CCC---hhhHHHHHHHHHhcCCHHHHHH
Q 012360 314 -----IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRV----------QPT---IEHFVCLVDLLSRAGLLYQAEE 375 (465)
Q Consensus 314 -----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~---~~~~~~l~~~~~~~g~~~~A~~ 375 (465)
..++......|.-++...+++++|..+++++.+.... .|+ ...+..++..+.-.|++.+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 1223334567888899999999999999998852110 122 1233456777888999999999
Q ss_pred HHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 376 FIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 376 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
.++++.. +.|......+...+...|.+.+|++.++.+..+.|++..+....+.++...|+|.+|..+.+...+
T Consensus 438 ~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 438 KLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 9998754 458888888899999999999999999888889999999999999999999999999888866644
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-16 Score=153.84 Aligned_cols=412 Identities=9% Similarity=0.016 Sum_probs=307.8
Q ss_pred ccchhHHHHHhccCCcc--hhhhHHHHHHHccCChHHHHHHhccCCCCCcc-cHHHH--HHHHHhcCChhHHHHHHHHHH
Q 012360 2 GKGLHAHVTKTALDSDI--YVGNSLIHFYGRMALFTDARVLFDKMPFRDVG-SWNTL--MSIYNDFSDSGEVLILFKQLI 76 (465)
Q Consensus 2 ~~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l--~~~~~~~~~~~~a~~~~~~m~ 76 (465)
|...+....+.. |+. .++ .++..+...|+.++|+..+++...|+.. .+..+ ...+...|++++|+++|+++.
T Consensus 53 Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL 129 (822)
T PRK14574 53 VLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSL 129 (822)
T ss_pred HHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555665544 443 355 8888899999999999999999876444 34444 457778899999999999999
Q ss_pred HcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCC-CchhH
Q 012360 77 FEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRR-NIVSL 154 (465)
Q Consensus 77 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~ 154 (465)
+.. +-++..+..++..+...++.++|++.++.+.+. .|+...+..++..+...++..+|++.++++ ...| +...+
T Consensus 130 ~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~ 206 (822)
T PRK14574 130 KKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVL 206 (822)
T ss_pred hhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHH
Confidence 864 334566667788889999999999999999876 445555555555555567776799999999 4456 56677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhcC-ChHH--------HHHHHHHH-H----HcC---ChhHHHHHHHHHHHc-CCCCC
Q 012360 155 NILINGYIDMELVDLAREVFDEIVDK-DIVL--------WRSMMHGC-V----KAK---QPEEALELFKKMIDE-GVTPD 216 (465)
Q Consensus 155 ~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~l~~~~-~----~~g---~~~~a~~~~~~~~~~-~~~~~ 216 (465)
..+...+.+.|-...|.++...-+.- +... ....++.- . ... -.+.|+.-++.+... +..|.
T Consensus 207 ~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~ 286 (822)
T PRK14574 207 KNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPE 286 (822)
T ss_pred HHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCc
Confidence 88899999999999999888765431 1111 11111110 0 111 234566666666652 22233
Q ss_pred H-HHH----HHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---------C
Q 012360 217 E-EVM----VSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK---------D 282 (465)
Q Consensus 217 ~-~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~ 282 (465)
. ..| .-.+-++...++..+++..|+.+...+.+....+...+..+|...+++++|..+|+.+..+ +
T Consensus 287 ~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~ 366 (822)
T PRK14574 287 AQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDD 366 (822)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcc
Confidence 2 222 2345567889999999999999999887766778899999999999999999999986432 2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CC--CHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 012360 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGI-----------KP--NEA-TFVSVLAACRHSGLITEGCQLFRRMGGVY 348 (465)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-----------~p--~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 348 (465)
......|.-++...+++++|..+++++.+.-. .| |-. .+..++..+...|+..+|++.++++..
T Consensus 367 ~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~-- 444 (822)
T PRK14574 367 LLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS-- 444 (822)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 22346788999999999999999999987411 12 222 345566788899999999999999985
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 349 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.-|-|......+.+.+...|.+.+|+..++.... +.+..+....+.++...+++++|..+.+.+.+..|+++.
T Consensus 445 ~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 445 TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 4456888999999999999999999999987654 336677788888999999999999999999999999986
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-17 Score=152.94 Aligned_cols=427 Identities=13% Similarity=0.060 Sum_probs=283.6
Q ss_pred CcchhhhHHHHHHHccCChHHHHHHhccCCCCC------cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhh--H
Q 012360 16 SDIYVGNSLIHFYGRMALFTDARVLFDKMPFRD------VGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKIT--L 87 (465)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~ 87 (465)
.||.+.+.|.+.|--.|+++.+..+.+.+...+ ..+|-.+.++|-..|++++|...|....+. .||.++ +
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccc
Confidence 456666666676666777777776666554221 234666667777777777777777665543 344333 3
Q ss_pred HHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCC----ChHHHHHHHHhh--CCCCCchhHHHHHHHH
Q 012360 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCK----EMDEALRLFDEM--GSRRNIVSLNILINGY 161 (465)
Q Consensus 88 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~--~~~~~~~~~~~l~~~~ 161 (465)
.-+...+...|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+. ..+.|...|-.+...+
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 345566666777777777777776653 333444445555555543 344555555444 2233455555555554
Q ss_pred HhcCChHHHHHHHHHh--------hcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHc---CCCCCH------HHHHHHH
Q 012360 162 IDMELVDLAREVFDEI--------VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE---GVTPDE------EVMVSVL 224 (465)
Q Consensus 162 ~~~~~~~~a~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~------~~~~~ll 224 (465)
...+-+.. +..|... ....+...|.+...+...|++..|...|...... ...+|. .+--.+.
T Consensus 425 e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 44333322 4333332 2235566777777778888888888888776653 122232 1222344
Q ss_pred HHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHH
Q 012360 225 SACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNE 301 (465)
Q Consensus 225 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 301 (465)
...-..++.+.|.+.|+.+.+.. +.-...|..++......+...+|...+..+. ..++..+..+...+.....+..
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcc
Confidence 45556677888888888887753 2223444445444444577788888887655 3466777778888888888888
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcC
Q 012360 302 ALRVFYQMERKG-IKPNEATFVSVLAACRH------------SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG 368 (465)
Q Consensus 302 a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 368 (465)
|.+-|....+.- ..+|..+...|.+.|.. .+..++|+++|.++.+ ..+.|...-+-+.-.+...|
T Consensus 583 a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 583 AKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred cccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhcc
Confidence 888777665532 23566666666665543 2457789999999885 34567888888899999999
Q ss_pred CHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHhhcCChHHHHHHHH
Q 012360 369 LLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLG--NQSHEAYVLLSNFYALEGHWTEVAEARR 444 (465)
Q Consensus 369 ~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 444 (465)
++.+|..+|..+.+ .....+|-.+..+|...|+|..|+++|+...+.. .+++.+...|+.++.+.|.+.+|.+.+.
T Consensus 661 ~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALL 740 (1018)
T ss_pred CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999876 3467889999999999999999999999998854 4677789999999999999999998887
Q ss_pred HHHHh
Q 012360 445 NMKEL 449 (465)
Q Consensus 445 ~~~~~ 449 (465)
.....
T Consensus 741 ~a~~~ 745 (1018)
T KOG2002|consen 741 KARHL 745 (1018)
T ss_pred HHHHh
Confidence 65543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-15 Score=141.94 Aligned_cols=418 Identities=12% Similarity=0.081 Sum_probs=222.1
Q ss_pred HHHHccCChHHHHHHhccCCCCCcccHHHHHH---HHHhc---CChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhh
Q 012360 26 HFYGRMALFTDARVLFDKMPFRDVGSWNTLMS---IYNDF---SDSGEVLILFKQLIFEGIVADKITLVILFSACARLEK 99 (465)
Q Consensus 26 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~---~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 99 (465)
..+.+.|+.+.|+..|+...+-|+..-++++. .-... ..+..++.++...-..+ .-++...+.|.+-+...|+
T Consensus 207 ~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~d 285 (1018)
T KOG2002|consen 207 HCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKD 285 (1018)
T ss_pred hHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhccc
Confidence 44455566666665555554333322222221 11112 23344445544443322 2355566667777777788
Q ss_pred hhhhhHHHHHHHHhCCc--cchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCCch--hHHHHHHHHHhcCChHHHHHHH
Q 012360 100 LHYGKTVHCYATKVGLE--YMLNMENALLLMYAKCKEMDEALRLFDEM-GSRRNIV--SLNILINGYIDMELVDLAREVF 174 (465)
Q Consensus 100 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~ 174 (465)
+..+..+...+...... .-...|-.+.++|-..|++++|...|-+. +..|+.. .+.-+...+.+.|+++.+...|
T Consensus 286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~f 365 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCF 365 (1018)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHH
Confidence 88888877777765421 12234566777888888888888887666 4455443 3445667777888888888888
Q ss_pred HHhhc--C-ChHHHHHHHHHHHHcC----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHH----
Q 012360 175 DEIVD--K-DIVLWRSMMHGCVKAK----QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI---- 243 (465)
Q Consensus 175 ~~~~~--~-~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---- 243 (465)
+.+.. | +..+..++...|...+ ..+.|..++.+..+.- +.|...|..+...+....-+.. ...|..+
T Consensus 366 Ekv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L 443 (1018)
T KOG2002|consen 366 EKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDIL 443 (1018)
T ss_pred HHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHH
Confidence 77743 2 4455666666666554 4566666666666542 3455666666555544333322 4444433
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------CCh------hhHHHHHHHHHHcCChHHHHHHHHHHH
Q 012360 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC-------KDV------VTWTTMIEGLANYGLGNEALRVFYQME 310 (465)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~ 310 (465)
...+.++.+...|.+...+...|++++|...|..... ++. .+--.+...+-..++.+.|.+.|..+.
T Consensus 444 ~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Il 523 (1018)
T KOG2002|consen 444 ESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSIL 523 (1018)
T ss_pred HHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3344456677777777777777777777777754331 111 111223333444556666666666666
Q ss_pred HCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CCc
Q 012360 311 RKGIKPNEA-TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA----EDK 385 (465)
Q Consensus 311 ~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~ 385 (465)
+. .|+.. .|..++-.....++..+|...+...... ...++..+..+.+.+.+...+..|.+-|..+.. .+|
T Consensus 524 ke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~--d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D 599 (1018)
T KOG2002|consen 524 KE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI--DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTD 599 (1018)
T ss_pred HH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc--ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCc
Confidence 65 45432 3333332222345566666666665542 222333334444455555555555543333221 223
Q ss_pred cchHHHHHHHHH------------hcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 386 FISYKALLSACI------------TYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 386 ~~~~~~l~~~~~------------~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
..+.-.|+..|. ..+..++|+++|.++++.+|.+..+-+.++..+...|++++|+.+|.+.++..
T Consensus 600 ~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~ 676 (1018)
T KOG2002|consen 600 AYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT 676 (1018)
T ss_pred hhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH
Confidence 333333333322 11234455555555555555555555555555555555555555555554443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.4e-16 Score=131.74 Aligned_cols=410 Identities=10% Similarity=0.049 Sum_probs=275.2
Q ss_pred hhhhHHHHHHHccCChHHHHHHhccCCCC----Cccc-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch--h----hH
Q 012360 19 YVGNSLIHFYGRMALFTDARVLFDKMPFR----DVGS-WNTLMSIYNDFSDSGEVLILFKQLIFEGIVADK--I----TL 87 (465)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~----~~ 87 (465)
.+...|.+-|..+....+|+..++-+.+. |.-. --.+...+.+.+++.+|+..|+..... .|+. . ..
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil 279 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKIL 279 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHH
Confidence 34445556666667788999988876633 2221 123455678889999999999887764 3332 2 34
Q ss_pred HHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh---CC------------CCCch
Q 012360 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM---GS------------RRNIV 152 (465)
Q Consensus 88 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~------------~~~~~ 152 (465)
+.+...+.+.|+++.|...|+...+. .|+..+-..|+-++..-|+.++..+.|.+| .. .|+..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 44555678899999999999988875 567666555666777789999999999988 11 12222
Q ss_pred hHHHH-----HHHHHhcCC--hHHHHHHHHHhhcC----ChH-------------HHHH--------HHHHHHHcCChhH
Q 012360 153 SLNIL-----INGYIDMEL--VDLAREVFDEIVDK----DIV-------------LWRS--------MMHGCVKAKQPEE 200 (465)
Q Consensus 153 ~~~~l-----~~~~~~~~~--~~~a~~~~~~~~~~----~~~-------------~~~~--------l~~~~~~~g~~~~ 200 (465)
..+.- +.-.-+.++ .++++-.--+++.| +-. .+.. -...+.++|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 22221 222222211 22222222222222 110 0111 1224678888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHH------------------------------------HHhccchhhHhHHHHHHHHH
Q 012360 201 ALELFKKMIDEGVTPDEEVMVSVL------------------------------------SACSSLSNLQYGRLVHRFIL 244 (465)
Q Consensus 201 a~~~~~~~~~~~~~~~~~~~~~ll------------------------------------~~~~~~~~~~~a~~~~~~~~ 244 (465)
|+++++-..+..-+..+..-+.+. ......|++++|...|++.+
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 888887766543221111111110 11223467888888888887
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 012360 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF 321 (465)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 321 (465)
...-......|+ +.-.+-..|++++|++.|-++. ..+....-.+...|-...++.+|++++.+.... ++.|+...
T Consensus 518 ~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 518 NNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred cCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 765333333333 4455677889999998886644 456667777778888888999999988776554 34467788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCccchHHHHHHHHH-hc
Q 012360 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM-PAEDKFISYKALLSACI-TY 399 (465)
Q Consensus 322 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~-~~ 399 (465)
..|...|-+.|+..+|.+.+-.--. -++-+..+...|...|....-+++|+.+|++. .-.|+..-|..++..|. +.
T Consensus 596 skl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhc
Confidence 8899999999999999887665543 44567888888888888888999999999875 34789999998887665 68
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCh
Q 012360 400 SEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHW 436 (465)
Q Consensus 400 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 436 (465)
|++.+|..+|+......|.+...+..|.+.+...|..
T Consensus 674 gnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred ccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 9999999999999999999999999999999888753
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.3e-14 Score=120.71 Aligned_cols=393 Identities=14% Similarity=0.081 Sum_probs=262.7
Q ss_pred chhHHHHHhccCCcchhhhHHHHHHHccC--ChH-------------------------HHHHHhccCCCCCcccHHHHH
Q 012360 4 GLHAHVTKTALDSDIYVGNSLIHFYGRMA--LFT-------------------------DARVLFDKMPFRDVGSWNTLM 56 (465)
Q Consensus 4 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~--~~~-------------------------~A~~~~~~~~~~~~~~~~~l~ 56 (465)
.+++.|.+.|++-+..+-..|+..-+-.+ ++. -|. ++-+..+.+..+|..+|
T Consensus 136 ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd-L~~E~~PKT~et~s~mI 214 (625)
T KOG4422|consen 136 ILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD-LLFETLPKTDETVSIMI 214 (625)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH-HHHhhcCCCchhHHHHH
Confidence 47888999998888887777766543322 111 111 22223344677999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChH
Q 012360 57 SIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMD 136 (465)
Q Consensus 57 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 136 (465)
.++++--..+.|.++|++-.....+.+..+||.+|.+-+-. ...+++.+|......||..++|+++.+..+.|+++
T Consensus 215 ~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~ 290 (625)
T KOG4422|consen 215 AGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFE 290 (625)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchH
Confidence 99999999999999999998887889999999999765433 33789999999999999999999999999999887
Q ss_pred HHHH----HHHhh---CCCCCchhHHHHHHHHHhcCChHH-HHHHHHHhh-----------cC-ChHHHHHHHHHHHHcC
Q 012360 137 EALR----LFDEM---GSRRNIVSLNILINGYIDMELVDL-AREVFDEIV-----------DK-DIVLWRSMMHGCVKAK 196 (465)
Q Consensus 137 ~A~~----~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~-----------~~-~~~~~~~l~~~~~~~g 196 (465)
.|.. ++.+| |+.|...+|..+|..+++.++..+ +..+...+. .| |...|...|..|.+..
T Consensus 291 ~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~ 370 (625)
T KOG4422|consen 291 DARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLR 370 (625)
T ss_pred HHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhh
Confidence 6554 44444 999999999999999998887644 444444431 11 4556777788888888
Q ss_pred ChhHHHHHHHHHHHcC----CCCC---HHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 012360 197 QPEEALELFKKMIDEG----VTPD---EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269 (465)
Q Consensus 197 ~~~~a~~~~~~~~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (465)
+.+.|.++-.-+.... +.|+ ..-|..+....+.....+.....|+.|+-+-+-|+..+...++++....|.++
T Consensus 371 d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e 450 (625)
T KOG4422|consen 371 DLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLE 450 (625)
T ss_pred hHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcch
Confidence 8888877765544211 2232 22345666667777888888888888887777788888888888777777777
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCH-HHHHHHHHHhhcC
Q 012360 270 EALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS-GLI-TEGCQLFRRMGGV 347 (465)
Q Consensus 270 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-~~~-~~a~~~~~~~~~~ 347 (465)
-.-+++..+..- ...-+-+--++++..|......|+...-..+-....+. -++ +.....-.++.+.
T Consensus 451 ~ipRiw~D~~~~------------ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 451 VIPRIWKDSKEY------------GHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred hHHHHHHHHHHh------------hhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 777766554321 11112222334444455444445433222222222111 122 2222233344432
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCC----CccchHH---HHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 348 YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE----DKFISYK---ALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 348 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
. -.....+...-.+.+.|+.++|.+++.-+..+ |-....+ .++......++...|+.+++-|...+
T Consensus 519 -~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 519 -D--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred -c--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 3 34446677777889999999999998876432 2233445 45555567788889999999887766
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-13 Score=119.16 Aligned_cols=422 Identities=10% Similarity=0.061 Sum_probs=304.4
Q ss_pred hhhHHHHHHHccCChHHHHHHhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchh-hHHHHHHHhc
Q 012360 20 VGNSLIHFYGRMALFTDARVLFDKMP---FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKI-TLVILFSACA 95 (465)
Q Consensus 20 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~ 95 (465)
.|-...+.=...+++..|+.+|+... .++...|-..+..-.++.....|..++++.... -|... .|...+-.--
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHH
Confidence 33333333344566777888888766 446677888888888889999999999988764 34433 3333343444
Q ss_pred chhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 012360 96 RLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRRNIVSLNILINGYIDMELVDLAREVF 174 (465)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 174 (465)
..|++..|.++|+...+ ..|+...|++.++.=.+...++.|..++++. -+.|++.+|--....-.++|++..|..+|
T Consensus 153 ~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 56889999999988876 4789999999999999999999999999988 66899999998888888999999999998
Q ss_pred HHhhcC------ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhccchhhH---hHH-----H
Q 012360 175 DEIVDK------DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD--EEVMVSVLSACSSLSNLQ---YGR-----L 238 (465)
Q Consensus 175 ~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~---~a~-----~ 238 (465)
+...+. +...+.+....-.++..++.|.-+|+-.++. ++.+ ...|......--+-|+.. .++ -
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 877553 2344555555555677788888888887775 2222 233444433322334433 222 1
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCh---hhHHHHHH--------HHHHcCChHHHHHH
Q 012360 239 VHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--KDV---VTWTTMIE--------GLANYGLGNEALRV 305 (465)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~---~~~~~l~~--------~~~~~~~~~~a~~~ 305 (465)
-++.+++.+ +.|-.+|-..+..-...|+.+...++|++... |.. ..|...|- .-....+.+.+.++
T Consensus 310 qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 310 QYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 234444443 56677888888888888999999999988662 211 12222221 12346788999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012360 306 FYQMERKGIKPNEATFVSVLAAC----RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 306 ~~~m~~~g~~p~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (465)
++...+. ++....||.-+--.| .++.+...|.+++..+. |.-|...+|...|..-.+.++++.+.+++++..
T Consensus 389 yq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 389 YQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9998884 333456766554444 46789999999999998 778999999999999999999999999999876
Q ss_pred C-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhC-CC-CchhHHHHHHHHhhcCChHHHHHHHHHHHHhcC
Q 012360 382 A-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLG-NQ-SHEAYVLLSNFYALEGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 382 ~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 451 (465)
. .| +-.+|......-...|+.+.|..+|+-+++.. -+ ....|-..++.-...|.++.|+.+++++.+..-
T Consensus 465 e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 465 EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 5 44 67788888888888999999999999888754 22 223577888888899999999999998877644
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.5e-13 Score=119.95 Aligned_cols=430 Identities=12% Similarity=0.061 Sum_probs=315.2
Q ss_pred HHHHHccCChHHHHHHhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHH----HHcCCCCchhhHHHHHHHhcch
Q 012360 25 IHFYGRMALFTDARVLFDKMP---FRDVGSWNTLMSIYNDFSDSGEVLILFKQL----IFEGIVADKITLVILFSACARL 97 (465)
Q Consensus 25 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~~~l~~~~~~~ 97 (465)
.-+|++..-++.|..+++... +.+...|.+-...--.+|+.+....++++- ...|+..+...|..=...|-..
T Consensus 413 wlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a 492 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA 492 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc
Confidence 345667777888888887665 557888888777778889999888887764 4578888888888888888888
Q ss_pred hhhhhhhHHHHHHHHhCCccc--hhhHHHHHHHHHhCCChHHHHHHHHhh-CCCC-CchhHHHHHHHHHhcCChHHHHHH
Q 012360 98 EKLHYGKTVHCYATKVGLEYM--LNMENALLLMYAKCKEMDEALRLFDEM-GSRR-NIVSLNILINGYIDMELVDLAREV 173 (465)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 173 (465)
|..-.+..+....+..|+... ..+|+.-...|.+.+.++-|..+|... .+-| +...|......--..|..++-..+
T Consensus 493 gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 888888888888888876533 457778888888888888888888776 3344 455666666666677888888888
Q ss_pred HHHhhc---CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCC
Q 012360 174 FDEIVD---KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ 250 (465)
Q Consensus 174 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 250 (465)
|++... .....|-.....+-..|+...|..++....+.... +...+...+..-.....++.|..+|.+.... .|
T Consensus 573 lqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sg 649 (913)
T KOG0495|consen 573 LQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SG 649 (913)
T ss_pred HHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CC
Confidence 877743 34566666667777778888888888887775332 5566677777777778888888888777664 46
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 012360 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDC--KDV-VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLA 326 (465)
Q Consensus 251 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~ 326 (465)
+..+|.--+....-.++.++|.+++++..+ |+. ..|..+.+.+-+.++.+.|.+.|..-.+. -|+ ...|..|..
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLak 727 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAK 727 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHH
Confidence 666776666666667778888888776553 332 35666667777777777777777654443 333 345556666
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC------------------------
Q 012360 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA------------------------ 382 (465)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------ 382 (465)
.--+.|.+-+|..++++..- ..+.+...|...|+.-.+.|..+.|..+..+...
T Consensus 728 leEk~~~~~rAR~ildrarl--kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARL--KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHHhcchhhHHHHHHHHHh--cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchH
Confidence 66667777777777777764 3355677777777777777777777665543210
Q ss_pred --------CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCCCC
Q 012360 383 --------EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKK 454 (465)
Q Consensus 383 --------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 454 (465)
..|+...-.+...+....++++|.+.|.++++.+|++..+|..+...+.+.|.-++-.+++.+.... +|.
T Consensus 806 s~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~ 883 (913)
T KOG0495|consen 806 SIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPT 883 (913)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCC
Confidence 2255566777788888889999999999999999999999999999999999999999999987543 456
Q ss_pred CCCeeeecC
Q 012360 455 PGNSIIDLK 463 (465)
Q Consensus 455 ~~~~~~~~~ 463 (465)
-|..|.-+.
T Consensus 884 hG~~W~avS 892 (913)
T KOG0495|consen 884 HGELWQAVS 892 (913)
T ss_pred CCcHHHHHh
Confidence 666676543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.9e-18 Score=146.88 Aligned_cols=256 Identities=17% Similarity=0.125 Sum_probs=114.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 012360 187 SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV-MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265 (465)
Q Consensus 187 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (465)
.+...+.+.|++++|++++++......+|+... +..+...+...++++.|...++.+...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 346677888999999999866554432344444 444555566788899999999998876533 56667777777 688
Q ss_pred CCHHHHHHHHhcCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012360 266 GSLEEALVTFYKTD--CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFR 342 (465)
Q Consensus 266 ~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 342 (465)
+++++|.++++..- .+++..+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|++.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999998887654 3466677788888999999999999999987643 23466778888899999999999999999
Q ss_pred HhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 012360 343 RMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419 (465)
Q Consensus 343 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 419 (465)
++.+. .| +......++..+...|+.+++.++++.... +.++..|..+..++...|++++|...++++.+..|+|
T Consensus 171 ~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 99953 45 577888999999999999998888877644 3477788999999999999999999999999999999
Q ss_pred chhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 420 HEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 420 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
+.....++.++...|+.++|..+.++..
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999988654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-14 Score=134.18 Aligned_cols=331 Identities=13% Similarity=0.114 Sum_probs=229.2
Q ss_pred HHHHHhCCChHHHHHHHHhh--CCCCCchhHHHHHHHHHhcCChHHHHHHHHHh---hcCChHHHHHHHHHHHHcCChhH
Q 012360 126 LLMYAKCKEMDEALRLFDEM--GSRRNIVSLNILINGYIDMELVDLAREVFDEI---VDKDIVLWRSMMHGCVKAKQPEE 200 (465)
Q Consensus 126 ~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~ 200 (465)
.+.....|++++|.+++.++ ..+....+|.+|...|-+.|+.+++...+-.. .+.|...|..+.....+.|++++
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 33344448888888888777 33446667888888888888887777665433 33466777777777777888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChh----HHHHHHHHHHhcCCHHHHHHHHh
Q 012360 201 ALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF----VKTALIDMYSKCGSLEEALVTFY 276 (465)
Q Consensus 201 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~ 276 (465)
|.-.|.+.++.. +++...+---...|-+.|+...|...|.++.....+.+.. .....++.+...++-+.|.+.++
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 888888877753 3344444445566777788888888888777764322222 22234555666676677777776
Q ss_pred cCCC-----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC---------------------------CCCHHHHHHH
Q 012360 277 KTDC-----KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI---------------------------KPNEATFVSV 324 (465)
Q Consensus 277 ~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---------------------------~p~~~~~~~l 324 (465)
.... -+...++.++..|.+...++.|......+..... .++... -.+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl 383 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRL 383 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhH
Confidence 5442 2344677778888888888888777777665211 112222 112
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC---ccchHHHHHHHHHhc
Q 012360 325 LAACRHSGLITEGCQLFRRMGGVYR--VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED---KFISYKALLSACITY 399 (465)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~ 399 (465)
.-++.+....+....+....... . +.-+...|.-+.++|...|++.+|+++|..+...+ +...|..++.+|...
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 22333333333333344444332 4 33467789999999999999999999999997744 566899999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCCCee
Q 012360 400 SEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSI 459 (465)
Q Consensus 400 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 459 (465)
|.+++|++.|++++...|++..+...|...+.+.|+.++|.+.++.+...+....++..|
T Consensus 463 ~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred hhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 999999999999999999999999999999999999999999999876444333355554
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-13 Score=117.94 Aligned_cols=355 Identities=10% Similarity=0.074 Sum_probs=253.6
Q ss_pred HHHhccCCcchhhhHHHHHHHccCChHHHHHHhccCCC----CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch
Q 012360 9 VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF----RDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADK 84 (465)
Q Consensus 9 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 84 (465)
+...-.+.+..++..+|..+|+-...+.|.+++++... -+..+||.+|.+-.-. ...+++.+|....+.||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCch
Confidence 44445677899999999999999999999999998873 3667888888764433 337899999999999999
Q ss_pred hhHHHHHHHhcchhhhhh----hhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHH-HHHHHHhh----------CCCC
Q 012360 85 ITLVILFSACARLEKLHY----GKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDE-ALRLFDEM----------GSRR 149 (465)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~----------~~~~ 149 (465)
.|+|.++.+.++.|+++. |.+++.+|.+.|+.|+..+|..+|..+++.++..+ |..++.++ .+.|
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 999999999999997765 56788899999999999999999999999988754 44444444 2223
Q ss_pred -CchhHHHHHHHHHhcCChHHHHHHHHHhhcC-----------ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH
Q 012360 150 -NIVSLNILINGYIDMELVDLAREVFDEIVDK-----------DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDE 217 (465)
Q Consensus 150 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 217 (465)
|..-|..-+..|....+.+.|.++..-+... ...-|..+....+.....+.-...|+.|.-.-.-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 3445667788888889988888776655321 2234667777888889999999999999988788999
Q ss_pred HHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHH--
Q 012360 218 EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN-- 295 (465)
Q Consensus 218 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~-- 295 (465)
.+...++++....+.++-.-+++..++..|..........++..+++.. ..|+...-..+-.+..+
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~a 501 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCA 501 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999998876554444444444444322 01221111111111111
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHH---HHHHHHHhcCCHHH
Q 012360 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV---CLVDLLSRAGLLYQ 372 (465)
Q Consensus 296 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~ 372 (465)
..-.+.....-.+|.+. .......+.++..+.+.|..++|.+++..+.+.++--|-....+ .+++.-.+.+.+..
T Consensus 502 ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsq 579 (625)
T KOG4422|consen 502 ADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQ 579 (625)
T ss_pred HHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHH
Confidence 11112222333445544 33445566677777889999999999998865534344444444 55566667778888
Q ss_pred HHHHHHhCC
Q 012360 373 AEEFIKIMP 381 (465)
Q Consensus 373 A~~~~~~~~ 381 (465)
|...++-+.
T Consensus 580 A~~~lQ~a~ 588 (625)
T KOG4422|consen 580 AIEVLQLAS 588 (625)
T ss_pred HHHHHHHHH
Confidence 888887774
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.8e-13 Score=124.71 Aligned_cols=421 Identities=13% Similarity=0.102 Sum_probs=293.7
Q ss_pred HHHHHHHccCChHHHHHHhccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhh
Q 012360 23 SLIHFYGRMALFTDARVLFDKMPF---RDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEK 99 (465)
Q Consensus 23 ~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 99 (465)
...+.+.-.|+.++|.+++.++.+ .+...|..|...|-..|+.+++...+-..-..+ +-|...|..+.......|+
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc
Confidence 334444445999999999999873 367799999999999999999988775554332 4466788888888899999
Q ss_pred hhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCC--Cch----hHHHHHHHHHhcCChHHHHH
Q 012360 100 LHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRR--NIV----SLNILINGYIDMELVDLARE 172 (465)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~--~~~----~~~~l~~~~~~~~~~~~a~~ 172 (465)
++.|.-++.++++.. +++....-.-+..|-+.|+...|.+.|.++ ...| |.. .....+..+...++.+.|.+
T Consensus 223 i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999986 555555555678899999999999999998 3334 212 22334566667777788988
Q ss_pred HHHHhhcC-----ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC---------------------------HHHH
Q 012360 173 VFDEIVDK-----DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD---------------------------EEVM 220 (465)
Q Consensus 173 ~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------------------~~~~ 220 (465)
.++..... +...++.++..|.+..+++.|......+......+| ...
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v- 380 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV- 380 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-
Confidence 88877542 446788999999999999999988887766222222 222
Q ss_pred HHHHHHhccchhhHhHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC----CChhhHHHHHHHHH
Q 012360 221 VSVLSACSSLSNLQYGRLVHRFILQNN--ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC----KDVVTWTTMIEGLA 294 (465)
Q Consensus 221 ~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~ 294 (465)
.-++-++.+....+....+...+.+.+ +..+...|.-+..+|...|++.+|+.+|..+.. .+...|-.+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 122233445555555666666666665 344567888999999999999999999988764 25668999999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcC-------CCCCCChhhHHHHHHHHHh
Q 012360 295 NYGLGNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGV-------YRVQPTIEHFVCLVDLLSR 366 (465)
Q Consensus 295 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~ 366 (465)
..|.++.|.+.|...+.. .|+ ...-..|...+.+.|+.++|.+.+..+..- .+..|+..........+.+
T Consensus 461 ~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 999999999999999877 554 345666778888999999999999986421 1334444444555566667
Q ss_pred cCCHHHHHHHHHhCC----------------------------------------C---------CC--cc---------
Q 012360 367 AGLLYQAEEFIKIMP----------------------------------------A---------ED--KF--------- 386 (465)
Q Consensus 367 ~g~~~~A~~~~~~~~----------------------------------------~---------~~--~~--------- 386 (465)
.|+.++=..+...|. . ++ +.
T Consensus 539 ~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~ 618 (895)
T KOG2076|consen 539 VGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELR 618 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhc
Confidence 776655322221110 0 00 00
Q ss_pred --------chHHHHHHHHHhcCChHHHHHHHHHHHHhC--CCCc----hhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 387 --------ISYKALLSACITYSEFDLGKKVANNMMKLG--NQSH----EAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 387 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
..+..++.++++.+.+++|+.+...+.+.. -.+. ..-...+.+....+++..|..+++-|..
T Consensus 619 ~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~ 694 (895)
T KOG2076|consen 619 GLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVIT 694 (895)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 113445666777888888888888877743 1111 1233445556677888888887776653
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-12 Score=112.21 Aligned_cols=435 Identities=10% Similarity=0.063 Sum_probs=323.1
Q ss_pred ccchhHHHHHhccCCcchhhhHHHHHHHccCChHHHHHHhccCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 012360 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF--R-DVGSWNTLMSIYNDFSDSGEVLILFKQLIFE 78 (465)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 78 (465)
|+.||++.+... ..+...|-..+.+=.++..+..|+.+|+.... | -...|-..+..--..|+...|.++|++-.+
T Consensus 92 ARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~- 169 (677)
T KOG1915|consen 92 ARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWME- 169 (677)
T ss_pred HHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHc-
Confidence 678888888765 67888899999999999999999999998762 2 233555556556678999999999999877
Q ss_pred CCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh----CC-CCCchh
Q 012360 79 GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM----GS-RRNIVS 153 (465)
Q Consensus 79 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~-~~~~~~ 153 (465)
..|+...|.+.|+.-.+-+.++.|..+++..+-- .|+...|-.....=-+.|....|..+|+.. +. .-+...
T Consensus 170 -w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~l 246 (677)
T KOG1915|consen 170 -WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEIL 246 (677)
T ss_pred -CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4899999999999999999999999999998753 589999988888888999999999999887 21 112334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhcC-----ChHHHHHHHHHHHHcCChhHHHHH--------HHHHHHcCCCCCHHHH
Q 012360 154 LNILINGYIDMELVDLAREVFDEIVDK-----DIVLWRSMMHGCVKAKQPEEALEL--------FKKMIDEGVTPDEEVM 220 (465)
Q Consensus 154 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~--------~~~~~~~~~~~~~~~~ 220 (465)
+.++...-.++..++.|.-+|+-.++. ....|......--+-|+.....+. |+.+++.+ +-|-.++
T Consensus 247 fvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsW 325 (677)
T KOG1915|consen 247 FVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSW 325 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHH
Confidence 445555555677888888888766331 234455555544455665544433 34444442 4466677
Q ss_pred HHHHHHhccchhhHhHHHHHHHHHHcCCCCChh--HHHHHHHH--------HHhcCCHHHHHHHHhcCC---CCChhhHH
Q 012360 221 VSVLSACSSLSNLQYGRLVHRFILQNNITQDAF--VKTALIDM--------YSKCGSLEEALVTFYKTD---CKDVVTWT 287 (465)
Q Consensus 221 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~--------~~~~~~~~~a~~~~~~~~---~~~~~~~~ 287 (465)
--.++.-...|+.+...++|+..+..- +|-.. .|...|-. -....+.+.+.++|+... +....+|.
T Consensus 326 fdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFa 404 (677)
T KOG1915|consen 326 FDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFA 404 (677)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHH
Confidence 777777778899999999999998763 44221 22222211 124678888888887644 33444444
Q ss_pred HH----HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHH
Q 012360 288 TM----IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363 (465)
Q Consensus 288 ~l----~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 363 (465)
.+ ...-.++.+...|.+++...+ |.-|-..+|...|..-.+.++++....++++..+- -+-+..+|......
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~kyaEl 480 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAWSKYAEL 480 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHHHHHH
Confidence 43 444557789999999998876 55899999999999999999999999999999952 24477888888888
Q ss_pred HHhcCCHHHHHHHHHhCCCCCcc----chHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHh-----hcC
Q 012360 364 LSRAGLLYQAEEFIKIMPAEDKF----ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA-----LEG 434 (465)
Q Consensus 364 ~~~~g~~~~A~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-----~~g 434 (465)
-...|+.+.|..+|+-...+|.. ..|.+.|..-...|.++.|..+|+++++..+... +|...+..-. +.|
T Consensus 481 E~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~ 559 (677)
T KOG1915|consen 481 ETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASASEGQED 559 (677)
T ss_pred HHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccc
Confidence 88999999999999998887743 3466777777789999999999999999877665 4766665544 344
Q ss_pred -----------ChHHHHHHHHHHHH
Q 012360 435 -----------HWTEVAEARRNMKE 448 (465)
Q Consensus 435 -----------~~~~a~~~~~~~~~ 448 (465)
....|+.+|++...
T Consensus 560 ~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 560 EDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred cchhhhhcchhHHHHHHHHHHHHHH
Confidence 55668888887653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.8e-13 Score=118.39 Aligned_cols=428 Identities=10% Similarity=0.061 Sum_probs=336.9
Q ss_pred CCcchhhhHHHHHHHccCChHHHHHHhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHH
Q 012360 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMP---FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILF 91 (465)
Q Consensus 15 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 91 (465)
+.++..|... ....+.++|+-++.... +.+...|. +|.+..-++.|..+++..++. ++.+...|.+..
T Consensus 377 P~sv~LWKaA----VelE~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa 447 (913)
T KOG0495|consen 377 PRSVRLWKAA----VELEEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAA 447 (913)
T ss_pred CchHHHHHHH----HhccChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHH
Confidence 4455555443 34566777998888765 33444444 456677889999999999875 677888887777
Q ss_pred HHhcchhhhhhhhHHHHHHH----HhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh---CCCC--CchhHHHHHHHHH
Q 012360 92 SACARLEKLHYGKTVHCYAT----KVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM---GSRR--NIVSLNILINGYI 162 (465)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~--~~~~~~~l~~~~~ 162 (465)
..--..|+.+.+.+++++.+ ..|+..+..-|..=...|-..|..-.+..+.... |+.. -..||..-...|.
T Consensus 448 ~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~ 527 (913)
T KOG0495|consen 448 KLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCE 527 (913)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHH
Confidence 77778899999988877654 4688888888888888899999999888888776 3322 3458888899999
Q ss_pred hcCChHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHH
Q 012360 163 DMELVDLAREVFDEIVDK---DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLV 239 (465)
Q Consensus 163 ~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 239 (465)
+.+.++-|..+|....+- +...|...+..--..|..++...+|++.... ++-....+......+-..|++..|..+
T Consensus 528 k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~i 606 (913)
T KOG0495|consen 528 KRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVI 606 (913)
T ss_pred hcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHH
Confidence 999999999999887552 5567777777667789999999999999986 333445555556667788999999999
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 012360 240 HRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD--CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317 (465)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 317 (465)
+.+..+.. +.+..++..-+........++.|..+|.+.. .+....|..-+...--.++.++|.+++++..+. -|+
T Consensus 607 l~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~ 683 (913)
T KOG0495|consen 607 LDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPD 683 (913)
T ss_pred HHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCc
Confidence 99999876 3477889899999999999999999998765 467778877777777789999999999999887 677
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHH
Q 012360 318 E-ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLS 394 (465)
Q Consensus 318 ~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 394 (465)
. ..|..+.+.+.+.++.+.|...|..-.+ .++..+..|..|.+.--+.|++-+|..++++... +.+...|-..++
T Consensus 684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir 761 (913)
T KOG0495|consen 684 FHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIR 761 (913)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHH
Confidence 5 5788888999999999999999988775 5666788999999999999999999999998643 448889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCc------------------------------hhHHHHHHHHhhcCChHHHHHHHH
Q 012360 395 ACITYSEFDLGKKVANNMMKLGNQSH------------------------------EAYVLLSNFYALEGHWTEVAEARR 444 (465)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~~p~~~------------------------------~~~~~l~~~~~~~g~~~~a~~~~~ 444 (465)
.-.+.|+.+.|..+..++++.-|.+. .+...++..+....+++.|++.|.
T Consensus 762 ~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~ 841 (913)
T KOG0495|consen 762 MELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFE 841 (913)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998877656553 345566666777777888888888
Q ss_pred HHHHhcCCCCCCCee
Q 012360 445 NMKELQTRKKPGNSI 459 (465)
Q Consensus 445 ~~~~~~~~~~~~~~~ 459 (465)
+....+ |+-|-.|
T Consensus 842 Ravk~d--~d~GD~w 854 (913)
T KOG0495|consen 842 RAVKKD--PDNGDAW 854 (913)
T ss_pred HHHccC--CccchHH
Confidence 665443 3444444
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-13 Score=119.55 Aligned_cols=385 Identities=12% Similarity=0.025 Sum_probs=251.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc-hhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccc-hhhHHHHHHHH
Q 012360 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGIVAD-KITLVILFSACARLEKLHYGKTVHCYATKVGLEYM-LNMENALLLMY 129 (465)
Q Consensus 52 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 129 (465)
+.....-|.++|++++|++.|.+.++. .|| +..|.....+|...|+|+.+.+--...++.+ |+ ...+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 444556678899999999999999885 678 6677777788889999999888777776653 33 34555566677
Q ss_pred HhCCChHHHHHHHHhh---CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhc---CChH--------------------
Q 012360 130 AKCKEMDEALRLFDEM---GSRRNIVSLNILINGYIDMELVDLAREVFDEIVD---KDIV-------------------- 183 (465)
Q Consensus 130 ~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~-------------------- 183 (465)
-..|++++|+.-..-. +.-.+. ....++.-..+.--...+.+-+..-.. |+..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~-s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNA-SIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccc-hhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 7777777765433222 100011 111111111111111112222221000 1111
Q ss_pred ---HHHHHHHHHH--HcC---ChhHHHHHHHHHHHc-CCCCCHH---------HHHHHHHH--hccchhhHhHHHHHHHH
Q 012360 184 ---LWRSMMHGCV--KAK---QPEEALELFKKMIDE-GVTPDEE---------VMVSVLSA--CSSLSNLQYGRLVHRFI 243 (465)
Q Consensus 184 ---~~~~l~~~~~--~~g---~~~~a~~~~~~~~~~-~~~~~~~---------~~~~ll~~--~~~~~~~~~a~~~~~~~ 243 (465)
....+..++. ..+ .+..|...+.+-... -..++.. .-..++.+ +.-.|+.-.+..-|+..
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 1111111111 111 223333333221110 0011111 11122222 34567888889999988
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HH
Q 012360 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EA 319 (465)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~ 319 (465)
++.... +...|..+..+|...++.++-...|++.. +.|+.+|..-.+.+.-.+++++|..=|++.+.. .|+ ..
T Consensus 353 I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~ 429 (606)
T KOG0547|consen 353 IKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAY 429 (606)
T ss_pred HhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhH
Confidence 887533 33347778888999999999999998765 457778888888888889999999999998876 554 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCc-------cch--H
Q 012360 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDK-------FIS--Y 389 (465)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-------~~~--~ 389 (465)
.|..+.-+..+.+.++++...|++..+ .++..+.+|+.....+...+++++|.+.|+.... .|. +.. -
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence 666666667789999999999999997 5667788999999999999999999999987643 221 111 1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 390 KALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 390 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
..++..-. .+++..|+++++++++++|.....|..|+....++|+.++|+++|++..
T Consensus 508 Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 508 KALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 22222222 3899999999999999999999999999999999999999999998753
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-13 Score=119.16 Aligned_cols=396 Identities=12% Similarity=0.113 Sum_probs=272.5
Q ss_pred cHHHH---HHHHHhcCChhHHHHHHHHHHHcCCCCchhhHH-HHHHHhcchhhhhhhhHHHHHHHHhCCccc----hhhH
Q 012360 51 SWNTL---MSIYNDFSDSGEVLILFKQLIFEGIVADKITLV-ILFSACARLEKLHYGKTVHCYATKVGLEYM----LNME 122 (465)
Q Consensus 51 ~~~~l---~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~ 122 (465)
+|+.| ..-|..+..+.+|+..|+-..+....|+.-... .+.+.+.+.+++.+|.+.+...+..-...+ +.+.
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 45544 445666777889999999988877777765443 345677888999999999998887633222 3345
Q ss_pred HHHHHHHHhCCChHHHHHHHHhh-CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhc----------------CChHHH
Q 012360 123 NALLLMYAKCKEMDEALRLFDEM-GSRRNIVSLNILINGYIDMELVDLAREVFDEIVD----------------KDIVLW 185 (465)
Q Consensus 123 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~ 185 (465)
+.+...+.+.|.++.|+..|+.. ...|+..+-..|+-++..-|+.++..+.|.+++. |+....
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 55666788999999999999987 6688888766677777778999999999988832 122222
Q ss_pred HHHH-----HHHHHcC--ChhHHHHHHHHHHHcCCCCCHH-------------HHH--------HHHHHhccchhhHhHH
Q 012360 186 RSMM-----HGCVKAK--QPEEALELFKKMIDEGVTPDEE-------------VMV--------SVLSACSSLSNLQYGR 237 (465)
Q Consensus 186 ~~l~-----~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~-------------~~~--------~ll~~~~~~~~~~~a~ 237 (465)
+.-+ .-.-+.. +.++++-.--++..--+.|+.. .+. .-...+.+.|+++.|.
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 2222 1121211 1222222222222222333311 010 0122478999999999
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHH------------------------------------HhcCCHHHHHHHHhcCCCC
Q 012360 238 LVHRFILQNNITQDAFVKTALIDMY------------------------------------SKCGSLEEALVTFYKTDCK 281 (465)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~~------------------------------------~~~~~~~~a~~~~~~~~~~ 281 (465)
++++-+.+..-..-...-+.|...+ ...|++++|.+.|++....
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 9998877654322222222221111 1346788888888877766
Q ss_pred ChhhHHHHH---HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHH
Q 012360 282 DVVTWTTMI---EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358 (465)
Q Consensus 282 ~~~~~~~l~---~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 358 (465)
|...-.+|. -.+-..|+.++|++.|-++..- +..+......+...|....+..+|++++.+... -++.++....
T Consensus 520 dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ils 596 (840)
T KOG2003|consen 520 DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILS 596 (840)
T ss_pred chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHH
Confidence 665444443 3456789999999999887643 234667788888999999999999999999874 5566888999
Q ss_pred HHHHHHHhcCCHHHHHHHH-HhCCCCC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCh
Q 012360 359 CLVDLLSRAGLLYQAEEFI-KIMPAED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHW 436 (465)
Q Consensus 359 ~l~~~~~~~g~~~~A~~~~-~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 436 (465)
.|.+.|-+.|+-..|.+.. +..+--| +..+..=|..-|....-+++++.+|+++.-..|+....-..++.++.+.|++
T Consensus 597 kl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccH
Confidence 9999999999999999864 4444433 6667666777788888899999999999999998887445566777789999
Q ss_pred HHHHHHHHHHHHh
Q 012360 437 TEVAEARRNMKEL 449 (465)
Q Consensus 437 ~~a~~~~~~~~~~ 449 (465)
..|..+++...+.
T Consensus 677 qka~d~yk~~hrk 689 (840)
T KOG2003|consen 677 QKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987643
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.3e-14 Score=127.12 Aligned_cols=285 Identities=11% Similarity=0.013 Sum_probs=150.3
Q ss_pred CCChHHHHHHHHhhCCCC-CchhHHHH-HHHHHhcCChHHHHHHHHHhhc--CChHHHH--HHHHHHHHcCChhHHHHHH
Q 012360 132 CKEMDEALRLFDEMGSRR-NIVSLNIL-INGYIDMELVDLAREVFDEIVD--KDIVLWR--SMMHGCVKAKQPEEALELF 205 (465)
Q Consensus 132 ~g~~~~A~~~~~~~~~~~-~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~--~l~~~~~~~g~~~~a~~~~ 205 (465)
.|+++.|.+.+....... +...+..+ .....+.|+++.|.+.+.++.+ |+..... .....+...|+++.|.+.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 466666665555441111 11122112 2222455555555555555432 2221111 1233445555555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhh
Q 012360 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285 (465)
Q Consensus 206 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 285 (465)
+++.+.. +-+......+...|.+.|+++.|..++..+.+.+..++. ....+- ...
T Consensus 177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~-----------------------~~a 231 (398)
T PRK10747 177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE-----------------------QQA 231 (398)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH-----------------------HHH
Confidence 5555432 113344444445555555555555555555544322111 111000 001
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHH
Q 012360 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365 (465)
Q Consensus 286 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 365 (465)
|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. +|+.... ++.+..
T Consensus 232 ~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l 305 (398)
T PRK10747 232 WIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRL 305 (398)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhc
Confidence 222222223334445555555554332 1335566667777777778888887777777642 3443221 223333
Q ss_pred hcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHH
Q 012360 366 RAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEAR 443 (465)
Q Consensus 366 ~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 443 (465)
..++.+++.+..+.... .| |+..+..+...+.+.+++++|.+.|+++.+..|++.. +..++.++.+.|+.++|..++
T Consensus 306 ~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~ 384 (398)
T PRK10747 306 KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMR 384 (398)
T ss_pred cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHH
Confidence 45777777777776544 33 4555677777788888888888888888887777665 667888888888888888777
Q ss_pred HHHHH
Q 012360 444 RNMKE 448 (465)
Q Consensus 444 ~~~~~ 448 (465)
++-..
T Consensus 385 ~~~l~ 389 (398)
T PRK10747 385 RDGLM 389 (398)
T ss_pred HHHHh
Confidence 75543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.6e-13 Score=122.02 Aligned_cols=283 Identities=11% Similarity=-0.010 Sum_probs=183.2
Q ss_pred hhhhhhhhHHHHHHHHhCCccchhh-HHHHHHHHHhCCChHHHHHHHHhh-CCCCCchhHH--HHHHHHHhcCChHHHHH
Q 012360 97 LEKLHYGKTVHCYATKVGLEYMLNM-ENALLLMYAKCKEMDEALRLFDEM-GSRRNIVSLN--ILINGYIDMELVDLARE 172 (465)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~--~l~~~~~~~~~~~~a~~ 172 (465)
.|+++.|++.+....+.. ++... +.....+..+.|+++.|.+.+.++ ...|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 599999998877755542 12222 333345558899999999999998 5566665443 33678889999999999
Q ss_pred HHHHhhc--C-ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCC
Q 012360 173 VFDEIVD--K-DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT 249 (465)
Q Consensus 173 ~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 249 (465)
.+++..+ | +......+...|.+.|++++|.+++..+.+.+..++. ....+-.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~------------------------ 229 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ------------------------ 229 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH------------------------
Confidence 9999844 3 6788999999999999999999999999987655322 2211100
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012360 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326 (465)
Q Consensus 250 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 326 (465)
.+|..++.......+.+...++++... +.++.....+...+...|+.++|.+++++..+. .|+.... ++.
T Consensus 230 ---~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~ 302 (398)
T PRK10747 230 ---QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLI 302 (398)
T ss_pred ---HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHH
Confidence 000111111111122233333333332 235556666667777777777777777776664 4444221 223
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCccchHHHHHHHHHhcCChHHH
Q 012360 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDKFISYKALLSACITYSEFDLG 405 (465)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a 405 (465)
+....++.+++++..+...+. .+-|...+..+...+.+.|++++|.+.|+.... .|+...+..+...+.+.|+.++|
T Consensus 303 ~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 303 PRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEA 380 (398)
T ss_pred hhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 333457777777777777753 334555666777777777777777777776654 46666667777777777777777
Q ss_pred HHHHHHHHHh
Q 012360 406 KKVANNMMKL 415 (465)
Q Consensus 406 ~~~~~~~~~~ 415 (465)
.+++++...+
T Consensus 381 ~~~~~~~l~~ 390 (398)
T PRK10747 381 AAMRRDGLML 390 (398)
T ss_pred HHHHHHHHhh
Confidence 7777777653
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-12 Score=111.17 Aligned_cols=256 Identities=13% Similarity=0.068 Sum_probs=201.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcC
Q 012360 189 MHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI--TQDAFVKTALIDMYSKCG 266 (465)
Q Consensus 189 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 266 (465)
..++-...+.+++..-.+.....|++.+...-+....+.....|+++|+.+|+++.+... -.|..+|+.++-.--...
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 345555567888888888888888776655555555566788899999999999988731 124556665553332222
Q ss_pred CHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 267 SLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 267 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
++.---...-.+.+-.+.|..++..-|.-.++.++|...|++..+. .|. ...|+.+.+-|....+...|++-++.+.
T Consensus 314 kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 314 KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 2221111122233345567777788888899999999999999987 554 4678888899999999999999999999
Q ss_pred cCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhH
Q 012360 346 GVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423 (465)
Q Consensus 346 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 423 (465)
+ -.+.|-..|..|.++|.-.+.+.-|+-.|++... +| |+..|.+|+.+|.+.++.++|++.|++++..+..+...+
T Consensus 392 d--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 392 D--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred h--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 5 3355888999999999999999999999998865 44 889999999999999999999999999999998888889
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 424 VLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 424 ~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
..|+.+|.+.++.++|..++++..+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999987765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.6e-13 Score=121.84 Aligned_cols=119 Identities=10% Similarity=-0.026 Sum_probs=80.4
Q ss_pred HhCCChHHHHHHHHhh-CCCCCchh-HHHHHHHHHhcCChHHHHHHHHHhhc--CCh--HHHHHHHHHHHHcCChhHHHH
Q 012360 130 AKCKEMDEALRLFDEM-GSRRNIVS-LNILINGYIDMELVDLAREVFDEIVD--KDI--VLWRSMMHGCVKAKQPEEALE 203 (465)
Q Consensus 130 ~~~g~~~~A~~~~~~~-~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~--~~~~~l~~~~~~~g~~~~a~~ 203 (465)
...|+++.|.+.+.+. ...|+... +-.......+.|+.+.|.+.+.+..+ |+. ...-.....+...|+++.|.+
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 3468888888888776 43454333 33334666677888888888877632 332 233334677777888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCC
Q 012360 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT 249 (465)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 249 (465)
.++.+.+.. +-+...+..+...+...|+++.|.+.+..+.+.+..
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~ 219 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF 219 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 888888764 224556677777788888888888888888877643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-12 Score=110.97 Aligned_cols=284 Identities=13% Similarity=0.091 Sum_probs=164.0
Q ss_pred HHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCC----CchhHHHHHHHHHhcCC
Q 012360 92 SACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRR----NIVSLNILINGYIDMEL 166 (465)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~ 166 (465)
.++-.....+++..-.+.....|++.+...-+....+.-...|+++|+.+|+++ ...| |..+|+.++-.--...+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 344455566667766777777776666666566666666677777777777777 2233 34455544433222222
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHc
Q 012360 167 VDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246 (465)
Q Consensus 167 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 246 (465)
+.---...-.+.+-.+.|..++.+.|.-.++.++|...|+..++.+.. ....|+.+-+-|...++...|..-++..++.
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 111111111222224456666666677777777777777777664321 2344555555566666777777777777665
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 012360 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323 (465)
Q Consensus 247 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 323 (465)
+ +.|-..|-.|.++|.-.+...-|+-+|++.. +.|...|.+|..+|.+.++.++|++.|.+....| ..+...+..
T Consensus 394 ~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~ 471 (559)
T KOG1155|consen 394 N-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVR 471 (559)
T ss_pred C-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHH
Confidence 4 4556666667777777777766766666543 3366677777777777777777777777766654 224456666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCC---C-CCC-ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 012360 324 VLAACRHSGLITEGCQLFRRMGGVY---R-VQP-TIEHFVCLVDLLSRAGLLYQAEEFIK 378 (465)
Q Consensus 324 l~~~~~~~~~~~~a~~~~~~~~~~~---~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 378 (465)
|...|-+.++..+|-+.|++..+.. | ..| ......-|..-+.+.+++++|.....
T Consensus 472 LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 7777777777777766666655321 1 112 12222234445555666666554433
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-12 Score=121.13 Aligned_cols=426 Identities=11% Similarity=0.025 Sum_probs=241.5
Q ss_pred chhHHHHHhccCCcchhhhHHHHHHHccCChHHHHHHhccCCCC----CcccHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 012360 4 GLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFR----DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEG 79 (465)
Q Consensus 4 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 79 (465)
.++..+...|+.|+-.+|..+|.-||..|+.+.|- +|..|.-. +...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 46788999999999999999999999999999998 88887732 4456777777777777766554
Q ss_pred CCCchhhHHHHHHHhcchhhhhh---hhHHHHHHH----HhCCc-cchhh-------------HHHHHHHHHhCCChHHH
Q 012360 80 IVADKITLVILFSACARLEKLHY---GKTVHCYAT----KVGLE-YMLNM-------------ENALLLMYAKCKEMDEA 138 (465)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~----~~~~~-~~~~~-------------~~~l~~~~~~~g~~~~A 138 (465)
.|...||..+..+|...||+.. +.+.+.... ..|+. |.... -...+....-.|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 5667777788888877776554 222111111 11211 11000 11223333344555555
Q ss_pred HHHHHhhCCCCCchhHHHHHHHHHh-cCChHHHHHHHHHhhc-CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 012360 139 LRLFDEMGSRRNIVSLNILINGYID-MELVDLAREVFDEIVD-KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216 (465)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 216 (465)
++++..+++..-..+...+++-+.. ...+++-..+.+.... ++..+|.+++.+-..+|+.+.|..++.+|.+.|++.+
T Consensus 159 lkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred HHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 5555544211111111111222111 1122333333333333 5556666666666666666666666666666666555
Q ss_pred HHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-------------------------------
Q 012360 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC------------------------------- 265 (465)
Q Consensus 217 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------------------------- 265 (465)
.+-|-.++-+ .++...+..+++-|.+.|+.|+..|+...+..+...
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~ 315 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLAN 315 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhH
Confidence 5544444433 455555555555555555555555554444333332
Q ss_pred ---------------------------------------CCHHHHHHHHhcCCC-------CChhhHHHHHHHHHHcCC-
Q 012360 266 ---------------------------------------GSLEEALVTFYKTDC-------KDVVTWTTMIEGLANYGL- 298 (465)
Q Consensus 266 ---------------------------------------~~~~~a~~~~~~~~~-------~~~~~~~~l~~~~~~~~~- 298 (465)
|+-++..++...+.. .++..|..++.-|.+.-+
T Consensus 316 k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~ 395 (1088)
T KOG4318|consen 316 KRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIER 395 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHh
Confidence 222222222222111 123334443333332211
Q ss_pred ---------------------hHHHHHHHHHHHHCCCCCCH----------------------------HHHHHHHHHHH
Q 012360 299 ---------------------GNEALRVFYQMERKGIKPNE----------------------------ATFVSVLAACR 329 (465)
Q Consensus 299 ---------------------~~~a~~~~~~m~~~g~~p~~----------------------------~~~~~l~~~~~ 329 (465)
..+..+++... .||. ..-+.++..|+
T Consensus 396 ~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~ 470 (1088)
T KOG4318|consen 396 HICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLN 470 (1088)
T ss_pred hHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHH
Confidence 11111111111 1111 11234444555
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC-----ccchHHHHHHHHHhcCChHH
Q 012360 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED-----KFISYKALLSACITYSEFDL 404 (465)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~ 404 (465)
..-+..+++..-++.... -+ ...|..|++.+......+.|..+.+++.... +..-+..+.+.+.+.+....
T Consensus 471 se~n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~d 546 (1088)
T KOG4318|consen 471 SEYNKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYD 546 (1088)
T ss_pred HHHHHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHH
Confidence 555555555444444321 11 2567888999999999999999988886533 44557788888889999999
Q ss_pred HHHHHHHHHHhC---CCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCCC
Q 012360 405 GKKVANNMMKLG---NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRK 453 (465)
Q Consensus 405 a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 453 (465)
+..+++++.+.- |.....+..+.+.....|+.+.-.+..+-+...|+..
T Consensus 547 l~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 547 LSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 999999998732 5556677888888889999999999888888888766
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-12 Score=120.99 Aligned_cols=280 Identities=11% Similarity=0.022 Sum_probs=204.2
Q ss_pred HhcCChHHHHHHHHHhhc--CC-hHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHhccchhhHhH
Q 012360 162 IDMELVDLAREVFDEIVD--KD-IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEE--VMVSVLSACSSLSNLQYG 236 (465)
Q Consensus 162 ~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a 236 (465)
...|+++.|.+.+.+..+ |+ ...+-....+....|+.+.|.+.+.+..+.. |+.. .-......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 367999999999988754 33 3344455677888999999999999988753 4432 333456778889999999
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhhHHH----HHHHHHHcCChHHHHHHHHHH
Q 012360 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK---DVVTWTT----MIEGLANYGLGNEALRVFYQM 309 (465)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~----l~~~~~~~~~~~~a~~~~~~m 309 (465)
...++.+.+.. +-++.+...+...+...|++++|.+.+....+. +...+.. ........+..+++.+.+..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999986 556778899999999999999999999877632 3332321 111223333333334455555
Q ss_pred HHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhh-HHHHHHH--HHhcCCHHHHHHHHHhCCC-
Q 012360 310 ERKGI---KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH-FVCLVDL--LSRAGLLYQAEEFIKIMPA- 382 (465)
Q Consensus 310 ~~~g~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~--~~~~g~~~~A~~~~~~~~~- 382 (465)
.+... +.+...+..+...+...|+.++|.+.+++..+. .|+... ...++.. ....++.+.+.+.++....
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 54411 126778888899999999999999999999964 343331 1012222 2345778888888877644
Q ss_pred CC-cc--chHHHHHHHHHhcCChHHHHHHHH--HHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 383 ED-KF--ISYKALLSACITYSEFDLGKKVAN--NMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 383 ~~-~~--~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
.| ++ ....++++.+.+.|++++|.+.|+ .+.+..|++.. +..++..+.+.|+.++|.+++++...
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44 45 567799999999999999999999 46667787766 77999999999999999999997643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-15 Score=130.13 Aligned_cols=253 Identities=14% Similarity=0.133 Sum_probs=69.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchhh-HHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCC
Q 012360 56 MSIYNDFSDSGEVLILFKQLIFEGIVADKIT-LVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134 (465)
Q Consensus 56 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 134 (465)
...+.+.|++++|++++++......+|+... |..+...+...++.+.|.+.++.+...+. .+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 4444555555555555543322211222222 22233333445555555555555554432 233344444444 45555
Q ss_pred hHHHHHHHHhh-CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhh-----cCChHHHHHHHHHHHHcCChhHHHHHHHHH
Q 012360 135 MDEALRLFDEM-GSRRNIVSLNILINGYIDMELVDLAREVFDEIV-----DKDIVLWRSMMHGCVKAKQPEEALELFKKM 208 (465)
Q Consensus 135 ~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 208 (465)
+++|.++++.. ...++...+..++..+.+.++++++.++++.+. +.+...|..+...+.+.|+.++|++.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555443 222333334444444444445544444444431 124455555556666666666666666666
Q ss_pred HHcCCCC-CHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHH
Q 012360 209 IDEGVTP-DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWT 287 (465)
Q Consensus 209 ~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 287 (465)
++. .| |......++..+...|+.+++..+++...+.. + .|+..+.
T Consensus 173 l~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~-------------------------------~~~~~~~ 218 (280)
T PF13429_consen 173 LEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-P-------------------------------DDPDLWD 218 (280)
T ss_dssp HHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--H-------------------------------TSCCHCH
T ss_pred HHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-c-------------------------------CHHHHHH
Confidence 553 23 34445555555555666655555555554432 2 2344445
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 288 TMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 288 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
.+..++...|++++|..+|++..+.. +.|+.....+..++...|+.++|.++.+++.
T Consensus 219 ~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 219 ALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 55555566666666666666665541 2245555666666666666666666666554
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-13 Score=124.21 Aligned_cols=276 Identities=9% Similarity=-0.004 Sum_probs=218.6
Q ss_pred ChHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHhccchhhHhHHHHH
Q 012360 166 LVDLAREVFDEIVDK---DIVLWRSMMHGCVKAKQPEEALELFKKMIDEG--VTPDEEVMVSVLSACSSLSNLQYGRLVH 240 (465)
Q Consensus 166 ~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 240 (465)
+..+|...|..++.. +..+...+..+|...+++++|.++|+.+.+.. ..-+...|.+.+..+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 467888888886432 44667778899999999999999999998742 122567888888765322 122222
Q ss_pred -HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 012360 241 -RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK---DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316 (465)
Q Consensus 241 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 316 (465)
+.+.+. -+..+.+|.++..+|.-.++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+.. .|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cc
Confidence 233332 3567889999999999999999999999997754 4578888999999999999999999987744 44
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHH
Q 012360 317 N-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALL 393 (465)
Q Consensus 317 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~ 393 (465)
. ...|..+...|.+.++++.|+-.|+++.+. -+.+......+...+.+.|+.++|+++++++.. ..|+..--..+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 3 346777889999999999999999999953 233666777888899999999999999998754 33666666667
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 394 SACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
..+...+++++|+..++++.+.-|++..++..++..|.+.|+.+.|+.-|--+.+.+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 778889999999999999999999999999999999999999999998877554443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-13 Score=123.98 Aligned_cols=278 Identities=14% Similarity=0.086 Sum_probs=211.6
Q ss_pred ChHHHHHHHHhh-CCCCCch-hHHHHHHHHHhcCChHHHHHHHHHhhcC------ChHHHHHHHHHHHHcCChhHHHHHH
Q 012360 134 EMDEALRLFDEM-GSRRNIV-SLNILINGYIDMELVDLAREVFDEIVDK------DIVLWRSMMHGCVKAKQPEEALELF 205 (465)
Q Consensus 134 ~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~ 205 (465)
+..+|...|..+ ...+++. ....+..+|...+++++|+++|+.+.+. +...|.+.+..+-+. -++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 456777777776 2334443 3445677888888888888888877442 566777777654332 122222
Q ss_pred -HHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh
Q 012360 206 -KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV 284 (465)
Q Consensus 206 -~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 284 (465)
+.+.+. -+-...+|.++-.+|+-+++.+.|++.|++..+.. +....+|+.+.+-+.....++.|...|+.....|+.
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 223332 23356788889889999999999999999888864 336788888888888899999999999998887777
Q ss_pred hHHH---HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHH
Q 012360 285 TWTT---MIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360 (465)
Q Consensus 285 ~~~~---l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 360 (465)
.|++ +...|.+.++++.|+-.|++..+- .| +.+....+...+.+.|+.++|+++++++..- -+.++..-..-
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~~ 563 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYHR 563 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHHH
Confidence 6666 567799999999999999998876 55 4566777888889999999999999999842 23355555566
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 361 VDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
+..+...+++++|...++++.. ..+...+..++..|.+.|+.+.|+.-|.-|.+++|....
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 7778899999999999999865 446777889999999999999999999999999987554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-11 Score=108.24 Aligned_cols=386 Identities=12% Similarity=0.010 Sum_probs=249.2
Q ss_pred hHHHHHHHccCChHHHHHHhccCC--CCC-cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchh-hHHHHHHHhcch
Q 012360 22 NSLIHFYGRMALFTDARVLFDKMP--FRD-VGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKI-TLVILFSACARL 97 (465)
Q Consensus 22 ~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~ 97 (465)
...-+-|-++|.+++|++.+.+.. .|+ ...|.....+|...|++++..+--...++. .|+-. .+..-.+++-..
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence 334456777899999999999887 566 778899999999999999988877777663 45533 333334455556
Q ss_pred hhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHh--hCCCCCchhHHHHHHHHH-------------
Q 012360 98 EKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDE--MGSRRNIVSLNILINGYI------------- 162 (465)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~l~~~~~------------- 162 (465)
|++++|+.=..-..-.+--.+..+- .++.-..+.--...+.+-+.. -.+-|+.....+....+.
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~-~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIE-PMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhH-HHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 6666654322111111100111100 000000000001111111110 011122221122221111
Q ss_pred ------------hcC---ChHHHHHHHHHhh-----cC--C---------hHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 012360 163 ------------DME---LVDLAREVFDEIV-----DK--D---------IVLWRSMMHGCVKAKQPEEALELFKKMIDE 211 (465)
Q Consensus 163 ------------~~~---~~~~a~~~~~~~~-----~~--~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 211 (465)
..+ .+..|.+.+.+-. .+ + ..+.......+.-.|+.-.|..-|+..++.
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 011 2333333332220 01 1 112222222345578889999999999886
Q ss_pred CCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhhHHH
Q 012360 212 GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC---KDVVTWTT 288 (465)
Q Consensus 212 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ 288 (465)
...++. .|.-+...|....+.++....|....+.+ +.++.+|..-.+.+.-.+++++|..-|++... .++..|-.
T Consensus 356 ~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQ 433 (606)
T KOG0547|consen 356 DPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQ 433 (606)
T ss_pred Ccccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHH
Confidence 544333 27777778999999999999999999876 45677888888888889999999999998764 35667777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC---------hhhHHH
Q 012360 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT---------IEHFVC 359 (465)
Q Consensus 289 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~~ 359 (465)
+..+..+.+++++++..|++.+++ ++-.+..|+.....+...++++.|.+.|+.+..- .|+ +.+...
T Consensus 434 l~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L---E~~~~~~~v~~~plV~Ka 509 (606)
T KOG0547|consen 434 LCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL---EPREHLIIVNAAPLVHKA 509 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh---ccccccccccchhhhhhh
Confidence 777888899999999999999887 3334689999999999999999999999998742 333 222333
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 012360 360 LVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGN 417 (465)
Q Consensus 360 l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 417 (465)
++-.- -.+++..|..++++..+ .| ....|.+|.....+.|+.++|+++|++...+-.
T Consensus 510 ~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 510 LLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred Hhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33322 34899999999998865 33 667899999999999999999999999887653
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-11 Score=108.00 Aligned_cols=420 Identities=11% Similarity=0.033 Sum_probs=288.3
Q ss_pred hhhhHHHHHHHccCChHHHHHHhccCC--CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcc
Q 012360 19 YVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96 (465)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 96 (465)
.-+..+++-+..+.++..|.-+-+++- ..|+..--.+.+++.-.|+++.|..++..-.-. ..|..+.......+.+
T Consensus 17 ~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~ 94 (611)
T KOG1173|consen 17 EKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVK 94 (611)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHH
Confidence 334444554555566666666666554 334445556777777778888877777654332 3466677777777788
Q ss_pred hhhhhhhhHHHHHH----HHhC---------Cccchhh-----------HHHHHHHHHhCCChHHHHHHHHhhCCCCCch
Q 012360 97 LEKLHYGKTVHCYA----TKVG---------LEYMLNM-----------ENALLLMYAKCKEMDEALRLFDEMGSRRNIV 152 (465)
Q Consensus 97 ~~~~~~a~~~~~~~----~~~~---------~~~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 152 (465)
..++++|..++... .... +.+|..- +-.-...|.....+++|...|.+.- ..|..
T Consensus 95 lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al-~~D~~ 173 (611)
T KOG1173|consen 95 LKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEAL-LADAK 173 (611)
T ss_pred HHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHH-hcchh
Confidence 88888888777622 1100 0111111 0001123444456677777766651 22322
Q ss_pred hHHH---HHHHHHh-----------------cC-ChHHHHHHHHHh--------------------hcCChHHHHHHHHH
Q 012360 153 SLNI---LINGYID-----------------ME-LVDLAREVFDEI--------------------VDKDIVLWRSMMHG 191 (465)
Q Consensus 153 ~~~~---l~~~~~~-----------------~~-~~~~a~~~~~~~--------------------~~~~~~~~~~l~~~ 191 (465)
.+.. ++....- .+ +.+.-..+|+-. ...+.........-
T Consensus 174 c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~ 253 (611)
T KOG1173|consen 174 CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADR 253 (611)
T ss_pred hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHH
Confidence 2222 2211110 01 111112222211 01134445555666
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 012360 192 CVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271 (465)
Q Consensus 192 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 271 (465)
+...+++.+..++.+...+. .++....+..-|..+...|+..+-..+-..+++.- |..+.+|-++...|...|++++|
T Consensus 254 ~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seA 331 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEA 331 (611)
T ss_pred HHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHH
Confidence 77889999999999999876 35566666666778888888888888888888763 56678999999999999999999
Q ss_pred HHHHhcCCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 012360 272 LVTFYKTDCKD---VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGV 347 (465)
Q Consensus 272 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 347 (465)
.++|.+...-| ...|-.....|.-.+..++|+..+...-+. .| ....+..+..-|.+.++.+.|.++|.++..
T Consensus 332 Rry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a- 408 (611)
T KOG1173|consen 332 RRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA- 408 (611)
T ss_pred HHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh-
Confidence 99998865433 458999999999999999999999887664 22 222334455668889999999999999984
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--------CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 012360 348 YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--------ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418 (465)
Q Consensus 348 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 418 (465)
-.|.|+...+.+.-.....+.+.+|..+|+.... .+ -..+++.|+.+|.+.+.+++|+..+++++.+.|.
T Consensus 409 -i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 409 -IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred -cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 2344677778888778888999999999987542 11 2356889999999999999999999999999999
Q ss_pred CchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 419 SHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 419 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
++.++..++-.|...|+++.|.+.|.+..
T Consensus 488 ~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 488 DASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99999999999999999999999998653
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-11 Score=101.76 Aligned_cols=279 Identities=14% Similarity=0.119 Sum_probs=183.4
Q ss_pred CCChHHHHHHHHhh--CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhc-CCh------HHHHHHHHHHHHcCChhHHH
Q 012360 132 CKEMDEALRLFDEM--GSRRNIVSLNILINGYIDMELVDLAREVFDEIVD-KDI------VLWRSMMHGCVKAKQPEEAL 202 (465)
Q Consensus 132 ~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~------~~~~~l~~~~~~~g~~~~a~ 202 (465)
..+.++|.++|-+| ..+.+..+.-+|.+.|.+.|..+.|+.+-..+.+ ||. .....|..-|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 35666666666666 2222334455666666677777777777666633 322 23445666778888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 012360 203 ELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD----AFVKTALIDMYSKCGSLEEALVTFYKT 278 (465)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 278 (465)
.+|..+.+.+ ..-......++..|-...+|++|+++-+++.+.+..+. ...|..+...+....+.+.|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 8888877653 22345667777888888888888888887777654332 234556666666677888888888776
Q ss_pred CCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChh
Q 012360 279 DCK---DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE 355 (465)
Q Consensus 279 ~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 355 (465)
.+. .+..--.+...+...|+++.|.+.++...+.+..--+.+...|..+|.+.|+.++....+.++.+. .+...
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~ 283 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGAD 283 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCcc
Confidence 543 334445566778888888888888888888733333456777888888888888888888888754 34444
Q ss_pred hHHHHHHHHHhcCCHHHHHH-HHHhCCCCCccchHHHHHHHHHh---cCChHHHHHHHHHHHH
Q 012360 356 HFVCLVDLLSRAGLLYQAEE-FIKIMPAEDKFISYKALLSACIT---YSEFDLGKKVANNMMK 414 (465)
Q Consensus 356 ~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~ 414 (465)
.-..+.+.-....-.+.|.. +.+.+..+|+...+..++..... .|...+....++.|+.
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 44555555555555555555 44556678888888877776543 3345566666666665
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-11 Score=100.91 Aligned_cols=262 Identities=14% Similarity=0.153 Sum_probs=147.9
Q ss_pred hhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCch------hHHHHHHHHHhcCChHHHH
Q 012360 98 EKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIV------SLNILINGYIDMELVDLAR 171 (465)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~ 171 (465)
++.++|.+.|-+|.+.. +.+..+.-+|.+.|.+.|..|.|+++.+.+-..||.. +...|..-|...|-+|.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 44455555555555422 2233334455555555666666666655553344432 2234445556666666666
Q ss_pred HHHHHhhcC---ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHhccchhhHhHHHHHHHHH
Q 012360 172 EVFDEIVDK---DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDE----EVMVSVLSACSSLSNLQYGRLVHRFIL 244 (465)
Q Consensus 172 ~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~ 244 (465)
.+|..+.+. -......|+..|-...+|++|++.-+++.+.+.++.. ..|.-+...+....+++.|...++...
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 666666542 2234555666677777777777777766665444332 234445555555666677777777666
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh----hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 012360 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV----TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT 320 (465)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 320 (465)
+.+ +..+..-..+.+.+...|+++.|.+.++.+.+.|+. +...|..+|.+.|+.++....+.++.+. .+....
T Consensus 208 qa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~~ 284 (389)
T COG2956 208 QAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGADA 284 (389)
T ss_pred hhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCccH
Confidence 654 223334445566666777777777777776655443 4555667777777777777777777766 333333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHh
Q 012360 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR 366 (465)
Q Consensus 321 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 366 (465)
-..+...-....-.+.|...+.+-..+ +|+...+..|++....
T Consensus 285 ~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 285 ELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLA 327 (389)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhc
Confidence 333444334444455555544444422 5777777777766544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.2e-11 Score=102.77 Aligned_cols=284 Identities=12% Similarity=0.082 Sum_probs=139.2
Q ss_pred CCChHHHHHHHHhhCCCCC--chhHHHHHHHHHhcCChHHHHHHHHHhhcC----ChHHHHHHHHHHHHcCChhHHHHHH
Q 012360 132 CKEMDEALRLFDEMGSRRN--IVSLNILINGYIDMELVDLAREVFDEIVDK----DIVLWRSMMHGCVKAKQPEEALELF 205 (465)
Q Consensus 132 ~g~~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~ 205 (465)
.|++.+|++...+-....+ ...|..-..+.-+.|+.+.+-.++.+.-++ +....-+........|+.+.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5777777777766521222 223333345555666777777776666332 3344555555666667777777766
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhh
Q 012360 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285 (465)
Q Consensus 206 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 285 (465)
+++.+.+.. +.........+|.+.|++.....++..+.+.+.-.+...-.. -..+
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l------------------------e~~a 231 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL------------------------EQQA 231 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH------------------------HHHH
Confidence 666665433 345556666667777777777777777666654433321100 0113
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHH
Q 012360 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365 (465)
Q Consensus 286 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 365 (465)
|..++.-....+..+.-...|+....+ .+.++..-..++.-+.+.|+.++|.++.++..+. +..|+ ...++ .+.
T Consensus 232 ~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~~~~-~~l 305 (400)
T COG3071 232 WEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LCRLI-PRL 305 (400)
T ss_pred HHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HHHHH-hhc
Confidence 333333333333333333344433222 1223333344444455555555555555555433 33333 11111 122
Q ss_pred hcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHH
Q 012360 366 RAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEAR 443 (465)
Q Consensus 366 ~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 443 (465)
+-++...-.+..+.... +.++..+.+|+..|.+.+.+.+|.+.|+.+++..|+..+ |..++.++.+.|+..+|....
T Consensus 306 ~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~-~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASD-YAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHcCChHHHHHHH
Confidence 33333333332222211 113344555555555555555555555555555554444 555555555555555555555
Q ss_pred HHHH
Q 012360 444 RNMK 447 (465)
Q Consensus 444 ~~~~ 447 (465)
++..
T Consensus 385 ~e~L 388 (400)
T COG3071 385 REAL 388 (400)
T ss_pred HHHH
Confidence 5444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.2e-11 Score=100.08 Aligned_cols=284 Identities=13% Similarity=0.046 Sum_probs=203.2
Q ss_pred hhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CC--CCCchhHHHHHHHHHhcCChHHHHHH
Q 012360 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GS--RRNIVSLNILINGYIDMELVDLAREV 173 (465)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 173 (465)
.|++..|++......+.+-.| ...|..-..+.-..||.+.+-.++.+. .. .++....-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 599999999999988877333 344556677778899999999999999 33 34445567777889999999999988
Q ss_pred HHHhh---cCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCC
Q 012360 174 FDEIV---DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQ 250 (465)
Q Consensus 174 ~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 250 (465)
++.+. ..+.........+|.+.|++.....++.++.+.|.-.+...-..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l---------------------------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL---------------------------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH----------------------------
Confidence 87763 35788899999999999999999999999999987655432110
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012360 251 DAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327 (465)
Q Consensus 251 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 327 (465)
...++..+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++..+..+++..|+ -...-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHh
Confidence 01122223333333333333333444433 23455666667777788888888888888877766655 122234
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCccchHHHHHHHHHhcCChHHHH
Q 012360 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDKFISYKALLSACITYSEFDLGK 406 (465)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~ 406 (465)
+.+.++...-++..++-.+.++. ++..+..|...|.+.+.+.+|...|+.... .|+..+|+-+..++.+.|+..+|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 55677777777777777764433 346777888888888888888888886544 678888888888888888888888
Q ss_pred HHHHHHHHh
Q 012360 407 KVANNMMKL 415 (465)
Q Consensus 407 ~~~~~~~~~ 415 (465)
++.++....
T Consensus 382 ~~r~e~L~~ 390 (400)
T COG3071 382 QVRREALLL 390 (400)
T ss_pred HHHHHHHHH
Confidence 888887753
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.5e-12 Score=108.91 Aligned_cols=198 Identities=14% Similarity=0.041 Sum_probs=162.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012360 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDC---KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327 (465)
Q Consensus 251 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 327 (465)
....+..+...+...|++++|.+.+++... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355677788888889999999988886542 345677888889999999999999999988763 3345677788889
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHH
Q 012360 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLG 405 (465)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a 405 (465)
+...|++++|...++++......+.....+..+...+...|++++|...+++... .| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999986422233455677788899999999999999988654 33 566788889999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 406 KKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 406 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
...++++.+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998888888889999999999999999998877543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.6e-12 Score=113.47 Aligned_cols=238 Identities=17% Similarity=0.170 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHc-----CC-CCCHHHH-HHHHHHhccchhhHhHHHHHHHHHHc-----C--CC
Q 012360 184 LWRSMMHGCVKAKQPEEALELFKKMIDE-----GV-TPDEEVM-VSVLSACSSLSNLQYGRLVHRFILQN-----N--IT 249 (465)
Q Consensus 184 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~ 249 (465)
+...+...|...|+++.|..+++..++. |. .|...+. +.+...|...+++.+|..+|+++... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444666777777777777777666543 10 1222111 22334455555555555555554431 1 01
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH-HHHHHHHHH
Q 012360 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI-KPNE-ATFVSVLAA 327 (465)
Q Consensus 250 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~-~~~~~l~~~ 327 (465)
.-..+++.|..+|.+.|++++|..++ +.|.+++++ ..|. .|.. ..++.+...
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~------------------------e~Al~I~~~--~~~~~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYC------------------------ERALEIYEK--LLGASHPEVAAQLSELAAI 334 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHH------------------------HHHHHHHHH--hhccChHHHHHHHHHHHHH
Confidence 11223334444444444444444332 223333333 1122 2222 345667778
Q ss_pred HHhcCCHHHHHHHHHHhhcCCC--CCC----ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-------CC---ccchHHH
Q 012360 328 CRHSGLITEGCQLFRRMGGVYR--VQP----TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-------ED---KFISYKA 391 (465)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~---~~~~~~~ 391 (465)
|+..+++++|..++++..+... +.+ ...+++.|...|...|++++|.++++++.. .. ....++.
T Consensus 335 ~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~ 414 (508)
T KOG1840|consen 335 LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ 414 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH
Confidence 8888999999888887654322 112 246788999999999999999999987643 11 2345788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH----hCCCC---chhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 392 LLSACITYSEFDLGKKVANNMMK----LGNQS---HEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~~----~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
+...|.+.+++.+|.++|.+... .+|++ ..+|..|+.+|.+.|++++|.++.+...
T Consensus 415 la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 415 LAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 88899999999999999988765 45554 4478999999999999999999988765
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.6e-09 Score=95.26 Aligned_cols=425 Identities=11% Similarity=0.015 Sum_probs=251.0
Q ss_pred ccCCcchhhhHHHHHHHccCChHHHHHHhccCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHH
Q 012360 13 ALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFR---DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89 (465)
Q Consensus 13 g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 89 (465)
+.+--..+....--.+...|+-++|.......... +.++|+++.-.+....++++|+..|.....-+ +-|...+..
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrD 114 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRD 114 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 34444455555555566678888888887766543 45678888888888889999999999887753 334456666
Q ss_pred HHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh----CCCCCchhHHHHH------H
Q 012360 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM----GSRRNIVSLNILI------N 159 (465)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~------~ 159 (465)
+--.-++.|+++..........+.. +.....|..++.++.-.|+...|..+++.. ...|+...+.... .
T Consensus 115 lslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~ 193 (700)
T KOG1156|consen 115 LSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQ 193 (700)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 6555567788888777777776653 233445677777777888999999888887 2235555554332 3
Q ss_pred HHHhcCChHHHHHHHHHhhcC--C-hHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc-cchhhHh
Q 012360 160 GYIDMELVDLAREVFDEIVDK--D-IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACS-SLSNLQY 235 (465)
Q Consensus 160 ~~~~~~~~~~a~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~ 235 (465)
...+.|..++|.+.+...... | ...-..-...+.+.++.++|..++..++.. .||...|...+..+. +..+..+
T Consensus 194 i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~ 271 (700)
T KOG1156|consen 194 ILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLE 271 (700)
T ss_pred HHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHH
Confidence 345677888888777665432 2 223344556678888999999999988885 567766665554443 2333333
Q ss_pred HH-HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH-HHHHhcCCCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH-
Q 012360 236 GR-LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA-LVTFYKTDCK-DVVTWTTMIEGLANYGLGNEALRVFYQMER- 311 (465)
Q Consensus 236 a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~- 311 (465)
+. .+|....+.- |.......+--......++... -.++....+. -+..+..+...|-.....+-..++...+..
T Consensus 272 ~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~ 349 (700)
T KOG1156|consen 272 ALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHS 349 (700)
T ss_pred HHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhh
Confidence 33 5555544431 1111111111111111222222 2222222222 223444444444332222211111111111
Q ss_pred ---CC----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHhcCCHHHHHH
Q 012360 312 ---KG----------IKPNE--ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT-IEHFVCLVDLLSRAGLLYQAEE 375 (465)
Q Consensus 312 ---~g----------~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 375 (465)
.| -+|.. .++..++..+-+.|+++.|..+++.+.. ..|+ +..|..-.+.+...|++++|..
T Consensus 350 L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~ 426 (700)
T KOG1156|consen 350 LSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAA 426 (700)
T ss_pred cccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHH
Confidence 11 03443 3455666778888889999888888884 2454 4556566678888888999888
Q ss_pred HHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc-------hhHHHH--HHHHhhcCChHHHHHHHH
Q 012360 376 FIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH-------EAYVLL--SNFYALEGHWTEVAEARR 444 (465)
Q Consensus 376 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-------~~~~~l--~~~~~~~g~~~~a~~~~~ 444 (465)
++++... .+|...-..-+.-..++++.++|.++.....+.+-.-. -.|..+ +.+|.++|++..|++=+.
T Consensus 427 ~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh 506 (700)
T KOG1156|consen 427 WLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFH 506 (700)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHh
Confidence 8888765 33443333555566678888888888887766543111 123333 567888888877776555
Q ss_pred HH
Q 012360 445 NM 446 (465)
Q Consensus 445 ~~ 446 (465)
.+
T Consensus 507 ~i 508 (700)
T KOG1156|consen 507 EI 508 (700)
T ss_pred hH
Confidence 44
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-11 Score=113.10 Aligned_cols=91 Identities=10% Similarity=0.084 Sum_probs=76.2
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCC
Q 012360 70 ILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRR 149 (465)
Q Consensus 70 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 149 (465)
.++-.+...|+.|+..||..+|.-|+..|+.+.|- +|..|.-...+.+...++.++......++.+.+. .|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------EP 81 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--------CC
Confidence 45667788889999999999999999999998888 8888888777888888888888888888877765 67
Q ss_pred CchhHHHHHHHHHhcCChHH
Q 012360 150 NIVSLNILINGYIDMELVDL 169 (465)
Q Consensus 150 ~~~~~~~l~~~~~~~~~~~~ 169 (465)
...+|..|..+|...|++..
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred chhHHHHHHHHHHhccchHH
Confidence 78889999999998888655
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-09 Score=100.07 Aligned_cols=425 Identities=14% Similarity=0.097 Sum_probs=245.3
Q ss_pred HHHhccCCcchhhhHHHHHHHccCChHHHHHHhccCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch-
Q 012360 9 VTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFR---DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADK- 84 (465)
Q Consensus 9 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~- 84 (465)
+....+..++.+|..|.-++...|+++.+-+.|++...- ....|+.+...+...|.-..|+.+++.-....-.|+.
T Consensus 314 ~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~ 393 (799)
T KOG4162|consen 314 LRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI 393 (799)
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence 344446678888888888888889999888888876633 4457888888888888888888888876544322433
Q ss_pred hhHHHHHHHhc-chhhhhhhhHHHHHHHHhC--C--ccchhhHHHHHHHHHhC-----------CChHHHHHHHHhh-CC
Q 012360 85 ITLVILFSACA-RLEKLHYGKTVHCYATKVG--L--EYMLNMENALLLMYAKC-----------KEMDEALRLFDEM-GS 147 (465)
Q Consensus 85 ~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~-~~ 147 (465)
..+-..-..|. +.+..+++..+-.++.... . ......+..+.-+|... ....++++.+++. ..
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 33333334443 4466666666666655521 1 11222333333333321 1123444445444 11
Q ss_pred CC-CchhHHHHHHHHHhcCChHHHHHHHHHhhc----CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 012360 148 RR-NIVSLNILINGYIDMELVDLAREVFDEIVD----KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS 222 (465)
Q Consensus 148 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 222 (465)
.| |..+...+.--|+..++++.|.+..++... -+...|..+.-.+...+++.+|+.+.+...+. ..-|......
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~ 552 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDG 552 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchh
Confidence 11 222222233344555566666655555422 24555666666666666666666666555432 1111111112
Q ss_pred HHHHhccchhhHhHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC----CC-C-hhhHHHHHHHHHH
Q 012360 223 VLSACSSLSNLQYGRLVHRFILQNN-ITQDAFVKTALIDMYSKCGSLEEALVTFYKTD----CK-D-VVTWTTMIEGLAN 295 (465)
Q Consensus 223 ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~-~-~~~~~~l~~~~~~ 295 (465)
-+..-..-++.+++......+...= -.+.. ...++-...++....+. ++ + +.++..+......
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~----------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~ 622 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGV----------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS 622 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhH----------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh
Confidence 2222233444555544444433210 00000 00111122222222221 11 1 2233322222211
Q ss_pred cCChHHHHHHHHHHHHCCCCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhc
Q 012360 296 YGLGNEALRVFYQMERKGIKP--N------EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA 367 (465)
Q Consensus 296 ~~~~~~a~~~~~~m~~~g~~p--~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 367 (465)
. ...+..-.. +....+.| + ...+......+.+.++.++|...+.++.. ..+.....|......+...
T Consensus 623 ~--~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~ 697 (799)
T KOG4162|consen 623 Q--LKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVK 697 (799)
T ss_pred h--hhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHH
Confidence 1 111110000 22222222 2 12344556778888999999988888875 4455677788888889999
Q ss_pred CCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHH--HHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHH
Q 012360 368 GLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKK--VANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEAR 443 (465)
Q Consensus 368 g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 443 (465)
|+.++|.+.|..... +| ++.+..++...+.+.|+...|.. ++..+++.+|.++..|..++..+.+.|+.++|-+.|
T Consensus 698 ~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 999999998877644 44 78889999999999999888888 999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 012360 444 RNMKEL 449 (465)
Q Consensus 444 ~~~~~~ 449 (465)
+...+.
T Consensus 778 ~aa~qL 783 (799)
T KOG4162|consen 778 QAALQL 783 (799)
T ss_pred HHHHhh
Confidence 977654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.2e-09 Score=93.53 Aligned_cols=114 Identities=9% Similarity=0.085 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHhhcCCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHhCCCCC----ccchHHHHHHHHHhcCChHHH
Q 012360 332 GLITEGCQLFRRMGGVYRVQPTIE--HFVCLVDLLSRAGLLYQAEEFIKIMPAED----KFISYKALLSACITYSEFDLG 405 (465)
Q Consensus 332 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a 405 (465)
..++.|..+|+++.+ +.+|... .|......=-+-|-...|+.++++....- ....|+..|.-....=-....
T Consensus 564 ~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~T 641 (835)
T KOG2047|consen 564 TKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRT 641 (835)
T ss_pred CCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCccc
Confidence 357778888888875 5655322 11122222234566777777777764321 223455555443333233445
Q ss_pred HHHHHHHHHhCCCCch--hHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 406 KKVANNMMKLGNQSHE--AYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 406 ~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
..+|+++++.-|++.. .....+..-.+.|..+.|+.++.-..
T Consensus 642 R~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~s 685 (835)
T KOG2047|consen 642 REIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGS 685 (835)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 5666666666555433 22334455556677777777666443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-08 Score=85.73 Aligned_cols=415 Identities=13% Similarity=0.042 Sum_probs=227.1
Q ss_pred HHHHHccCChHHHHHHhccCCCC---C-cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhh
Q 012360 25 IHFYGRMALFTDARVLFDKMPFR---D-VGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKL 100 (465)
Q Consensus 25 ~~~~~~~~~~~~A~~~~~~~~~~---~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 100 (465)
+.-+....++..|+.+++--... . ..+--.+..++.+.|++++|+..|.-+.... .|+...+..+.-+..-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 44555678889999888765421 1 1233446667788999999999999887754 56666665665555567888
Q ss_pred hhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcC
Q 012360 101 HYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK 180 (465)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 180 (465)
.+|..+..... .+.-.-..++....+.++-++-..+-+.++ ....--.++.+.....-.+++|++++.++...
T Consensus 108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~Lq--D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQ--DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHh--hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88877755432 222223344555566777777666666662 22233444555555566788889988888553
Q ss_pred --ChHHHHH-HHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcc--chhhHhH------------HHHHHH
Q 012360 181 --DIVLWRS-MMHGCVKAKQPEEALELFKKMIDEGVTPDE-EVMVSVLSACSS--LSNLQYG------------RLVHRF 242 (465)
Q Consensus 181 --~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~--~~~~~~a------------~~~~~~ 242 (465)
+....|. +.-+|.+..-++-+.++++..++. -||+ ...+.......+ .|+..+. ....+.
T Consensus 181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~ 258 (557)
T KOG3785|consen 181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEY 258 (557)
T ss_pred ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHH
Confidence 3334443 344567777777777777776664 2332 223322222221 1111110 001111
Q ss_pred HHHcCC-----------------CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC-------
Q 012360 243 ILQNNI-----------------TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGL------- 298 (465)
Q Consensus 243 ~~~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~------- 298 (465)
+.+++. ..-+..-..++-.|.+.+++++|..+.++..+.++.-|-.-.-.++..|+
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHH
Confidence 111110 00122334456667888999999999988876655544333333333332
Q ss_pred hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 012360 299 GNEALRVFYQMERKGIKPNE-ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFI 377 (465)
Q Consensus 299 ~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 377 (465)
..-|...|+-.-+.+..-|. .--.++..++.-..++++++.++..+..- +..|...-..+..+++..|.+.+|+++|
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY--F~NdD~Fn~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY--FTNDDDFNLNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCcchhhhHHHHHHHHhcChHHHHHHH
Confidence 33445555444334333332 12233444555555666776666666531 2222222235666777777777777777
Q ss_pred HhCCCC--CccchHH-HHHHHHHhcCChHHHHHHHHHHHHhC-CCCch-hHHHHHHHHhhcCChHHHHHHHHHHHHhcCC
Q 012360 378 KIMPAE--DKFISYK-ALLSACITYSEFDLGKKVANNMMKLG-NQSHE-AYVLLSNFYALEGHWTEVAEARRNMKELQTR 452 (465)
Q Consensus 378 ~~~~~~--~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 452 (465)
-.+... .|..+|. .|.++|.+.++++.|..++ ++.+ |.+.. ....++.-|.+.+.+=-|-+.|+.+...+..
T Consensus 417 ~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 417 IRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 666542 2344443 3445666677766654443 3333 32222 2334456666666666666666666554443
Q ss_pred CC
Q 012360 453 KK 454 (465)
Q Consensus 453 ~~ 454 (465)
|.
T Consensus 494 pE 495 (557)
T KOG3785|consen 494 PE 495 (557)
T ss_pred cc
Confidence 33
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=9e-12 Score=103.09 Aligned_cols=226 Identities=13% Similarity=0.057 Sum_probs=127.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 012360 186 RSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC 265 (465)
Q Consensus 186 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (465)
+.+..+|.+.|.+.+|.+.++..++. .|-..||..+-.+|.+..+++.|..++.+-++. ++.++....-+.+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45667777777777777777766664 444556666666677777777777666666554 233333333444444444
Q ss_pred CCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 266 GSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 266 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
++.++|.+++ +...+.. ..+......+...|.-.++++-|+.+|+++.
T Consensus 304 ~~~~~a~~lY-------------------------------k~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiL 351 (478)
T KOG1129|consen 304 EQQEDALQLY-------------------------------KLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRIL 351 (478)
T ss_pred HhHHHHHHHH-------------------------------HHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHH
Confidence 5555555544 4444331 1122333334444444444444444444444
Q ss_pred cCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC---CC--ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc
Q 012360 346 GVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA---ED--KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420 (465)
Q Consensus 346 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 420 (465)
+- |+ .++..|+.+.-+|.-.+++|-++.-|++... +| -..+|..+.......||+..|.+.|+-++..+|++.
T Consensus 352 qm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 352 QM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred Hh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 32 22 2334444444444444445444444443322 12 234566666666667777777777777777777777
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 421 EAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 421 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
..++.|+..-.+.|++++|+.+++...+
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 7777777777777777777777776544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-08 Score=91.69 Aligned_cols=404 Identities=11% Similarity=0.053 Sum_probs=214.4
Q ss_pred HHHHHHccCChHHHHHHhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHh--cchh
Q 012360 24 LIHFYGRMALFTDARVLFDKMP---FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSAC--ARLE 98 (465)
Q Consensus 24 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~--~~~~ 98 (465)
=++.+...|++++|.+....+. +.+...+.+-+-++.+.+++++|+.+.+.-... ..+..-+ +=.+| .+.+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc~Yrln 93 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYCEYRLN 93 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHHHHHcc
Confidence 3566667778888887777665 335566777777777788888877554432110 0011110 12333 3566
Q ss_pred hhhhhhHHHHHHHHhCCcc-chhhHHHHHHHHHhCCChHHHHHHHHhh--CCCCC-------------------------
Q 012360 99 KLHYGKTVHCYATKVGLEY-MLNMENALLLMYAKCKEMDEALRLFDEM--GSRRN------------------------- 150 (465)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~------------------------- 150 (465)
..++|...++ |..+ +..+...-...+.+.|++++|..+|+.+ ...++
T Consensus 94 k~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~ 168 (652)
T KOG2376|consen 94 KLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVP 168 (652)
T ss_pred cHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhcc
Confidence 6777766665 2222 2224444455666777777777777766 10111
Q ss_pred ---chhHHHHH---HHHHhcCChHHHHHHHHHhhc--------CCh----------HHHHHHHHHHHHcCChhHHHHHHH
Q 012360 151 ---IVSLNILI---NGYIDMELVDLAREVFDEIVD--------KDI----------VLWRSMMHGCVKAKQPEEALELFK 206 (465)
Q Consensus 151 ---~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~--------~~~----------~~~~~l~~~~~~~g~~~~a~~~~~ 206 (465)
..+|..+- ..++..|++.+|+++++...+ .|. ..--.+...+...|+.++|..+|.
T Consensus 169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 11233222 223345666666666655411 000 011223334455566666666666
Q ss_pred HHHHcCCCCCHHHH----HHHHHHhccchh-hH-hHHHHHHHHHHcC-------C--CCChhHHHHHHHHHHhcCCHHHH
Q 012360 207 KMIDEGVTPDEEVM----VSVLSACSSLSN-LQ-YGRLVHRFILQNN-------I--TQDAFVKTALIDMYSKCGSLEEA 271 (465)
Q Consensus 207 ~~~~~~~~~~~~~~----~~ll~~~~~~~~-~~-~a~~~~~~~~~~~-------~--~~~~~~~~~l~~~~~~~~~~~~a 271 (465)
..++.. .+|.... |.++. .....+ ++ .+...++...... + .--..++....-.....+.-+.+
T Consensus 249 ~~i~~~-~~D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~ 326 (652)
T KOG2376|consen 249 DIIKRN-PADEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQV 326 (652)
T ss_pred HHHHhc-CCCchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 655543 2232221 11111 111111 11 0011111100000 0 00001111111111122334444
Q ss_pred HHHHhcCCCCC-hhhHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHH----
Q 012360 272 LVTFYKTDCKD-VVTWTTMIEGLA--NYGLGNEALRVFYQMERKGIKPNE--ATFVSVLAACRHSGLITEGCQLFR---- 342 (465)
Q Consensus 272 ~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~---- 342 (465)
.++........ ...+.+++.... +...+..+.+++...-+. .|.. ......+......|+++.|++++.
T Consensus 327 r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 327 RELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 44444444322 234444444332 233577788888877665 4443 344555677788999999999999
Q ss_pred ----HhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--------CC-ccchHHHHHHHHHhcCChHHHHHHH
Q 012360 343 ----RMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--------ED-KFISYKALLSACITYSEFDLGKKVA 409 (465)
Q Consensus 343 ----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 409 (465)
.+.+ +...+.+...++..+.+.++.+.|..++.+... .+ -..++..+...-.+.|+-++|..++
T Consensus 405 ~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~l 481 (652)
T KOG2376|consen 405 SWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLL 481 (652)
T ss_pred hhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHH
Confidence 4442 233455667788888888887777777765432 11 1223444455556789999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHH
Q 012360 410 NNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARR 444 (465)
Q Consensus 410 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 444 (465)
+++++.+|++..+...++.+|.+. +.+.|..+-+
T Consensus 482 eel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 482 EELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 999999999999999999999876 4566666544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-10 Score=109.95 Aligned_cols=256 Identities=13% Similarity=0.026 Sum_probs=180.3
Q ss_pred ChHHHHHHHHHHHH-----cCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhc---------cchhhHhHHHHHHHHHH
Q 012360 181 DIVLWRSMMHGCVK-----AKQPEEALELFKKMIDEGVTPDE-EVMVSVLSACS---------SLSNLQYGRLVHRFILQ 245 (465)
Q Consensus 181 ~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 245 (465)
+...|...+.+-.. .+.+++|...|++..+. .|+. ..+..+..++. ..+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44555555554322 23467899999998874 4543 34444433322 34568899999999988
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHH
Q 012360 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--K-DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE-ATF 321 (465)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~ 321 (465)
.. +.+...+..+...+...|++++|...|++..+ | +...+..+...+...|++++|...+++..+. .|+. ..+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 75 45677888888889999999999999988653 3 4567888889999999999999999999887 4543 233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCc-cchHHHHHHHHHh
Q 012360 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDK-FISYKALLSACIT 398 (465)
Q Consensus 322 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~ 398 (465)
..++..+...|++++|+..++++... .+| +...+..+..++...|++++|...++++.. .|+ ....+.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 34455566789999999999998753 234 455567788889999999999999988754 333 3345556666666
Q ss_pred cCChHHHHHHHHHHHHh---CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 399 YSEFDLGKKVANNMMKL---GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 399 ~~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
.| +.|...++++.+. +|.++. .+...+.-.|+.+.+..+ +++.+.
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPG---LLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCch---HHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 66 4777777777663 355544 266666667777777666 766544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-08 Score=87.88 Aligned_cols=396 Identities=8% Similarity=-0.047 Sum_probs=241.8
Q ss_pred hhhhHHHHHHHccCChHHHHHHhccCCCCCc-ccHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcc
Q 012360 19 YVGNSLIHFYGRMALFTDARVLFDKMPFRDV-GSWNTLMSIYNDFS-DSGEVLILFKQLIFEGIVADKITLVILFSACAR 96 (465)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 96 (465)
..--..+..|...++-+.|......+++.-. ..-|.++.-+.+.| +..++.--+......- +.- ...|.+..+
T Consensus 98 e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrec-p~a----L~~i~~ll~ 172 (564)
T KOG1174|consen 98 EQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIREC-PMA----LQVIEALLE 172 (564)
T ss_pred HHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhc-chH----HHHHHHHHH
Confidence 3444556677777787888887777765433 33344444333333 2222222222222210 000 001111111
Q ss_pred hhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHH--hCCChHHHHHHHHhh----CCCCCchhHHHHHHHHHhcCChHHH
Q 012360 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA--KCKEMDEALRLFDEM----GSRRNIVSLNILINGYIDMELVDLA 170 (465)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a 170 (465)
.+ +..+...-..|.....+|........+.+++ -.++...|...+-.+ ..+-++.....+.+.+...|+.++|
T Consensus 173 l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a 251 (564)
T KOG1174|consen 173 LG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQA 251 (564)
T ss_pred Hh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHH
Confidence 00 0111111112222223333333333344333 334444444443322 4445667778888888899999999
Q ss_pred HHHHHHhhcCChHHHH---HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcC
Q 012360 171 REVFDEIVDKDIVLWR---SMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNN 247 (465)
Q Consensus 171 ~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 247 (465)
+..|++...-|+.+.. ...-.+.+.|+.+...++...+.... .-+...|..-.......+++..|..+-+..++.+
T Consensus 252 ~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~ 330 (564)
T KOG1174|consen 252 EDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE 330 (564)
T ss_pred HHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC
Confidence 9888877554443322 22334567788888888887776532 1222333333344456778888888888877764
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC--C-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012360 248 ITQDAFVKTALIDMYSKCGSLEEALVTFYKTD--C-KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSV 324 (465)
Q Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 324 (465)
+.+...+..-...+...++.++|.-.|+... . .+...|.-|+..|...|++.+|...-+...+. +..+..+.+.+
T Consensus 331 -~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~ 408 (564)
T KOG1174|consen 331 -PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLF 408 (564)
T ss_pred -cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhh
Confidence 3345556556677778889999988887654 2 47788999999999999999998877776554 23355666555
Q ss_pred H-HHHH-hcCCHHHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCccchHHHHHHHHHhcC
Q 012360 325 L-AACR-HSGLITEGCQLFRRMGGVYRVQPT-IEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDKFISYKALLSACITYS 400 (465)
Q Consensus 325 ~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 400 (465)
. ..|. ....-++|.+++++... ..|+ ....+.+.+.+...|..+++..+++.... .+|....+.|...+...+
T Consensus 409 g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~N 485 (564)
T KOG1174|consen 409 GTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQN 485 (564)
T ss_pred cceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 3 3333 33456788888888874 3453 55667788889999999999999987554 678888889999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHH
Q 012360 401 EFDLGKKVANNMMKLGNQSHEAYVLL 426 (465)
Q Consensus 401 ~~~~a~~~~~~~~~~~p~~~~~~~~l 426 (465)
.+++|+..|..++.++|.+..+...+
T Consensus 486 e~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 486 EPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred hHHHHHHHHHHHHhcCccchHHHHHH
Confidence 99999999999999999887654443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-09 Score=97.02 Aligned_cols=261 Identities=13% Similarity=0.015 Sum_probs=139.4
Q ss_pred ccchhhHHHHHHHHHhCCChHHHHHHHHhh--CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhc--C-ChHHHHHHHH
Q 012360 116 EYMLNMENALLLMYAKCKEMDEALRLFDEM--GSRRNIVSLNILINGYIDMELVDLAREVFDEIVD--K-DIVLWRSMMH 190 (465)
Q Consensus 116 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~ 190 (465)
..+..+.....+-+...+++.+..++++.+ ..++....+..-|.++...|+..+-..+=.++++ | ...+|-++..
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 344445555566666777777777777776 3345556666666677777776666655555544 2 4567777777
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 012360 191 GCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270 (465)
Q Consensus 191 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (465)
.|...|+.++|.+.|.+....... -...|.....+++-.+..++|...+...-+.= +.....+-.+..-|.+.++.+.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHH
Confidence 777777777777777776543211 12355666666666777777776666554421 1111112223334455555555
Q ss_pred HHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 012360 271 ALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERK--GI---KP-NEATFVSVLAACRHSGLITEGCQLF 341 (465)
Q Consensus 271 a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 341 (465)
|.++|.... +.|+...+-+.......+.+.+|..+|+..... .+ .+ -..+++.|.++|.+.+.+++|+..+
T Consensus 399 Ae~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 399 AEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 555554422 234445555554444555555555555554311 00 00 1223444445555555555555555
Q ss_pred HHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 012360 342 RRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380 (465)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 380 (465)
++... -.+.+..++..+.-.|...|+++.|.+.|.+.
T Consensus 479 q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 479 QKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 55443 22334444455554555555555555555443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.9e-11 Score=93.71 Aligned_cols=162 Identities=11% Similarity=0.043 Sum_probs=111.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHH
Q 012360 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364 (465)
Q Consensus 286 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (465)
...|.-.|...|+...|..-+++.++. .|+ ..++..+...|.+.|..+.|.+.|+++... -+.+..+.|....-+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHH
Confidence 344556677777777777777777766 444 356666667777777777777777777632 233566667777777
Q ss_pred HhcCCHHHHHHHHHhCCCCC----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHH
Q 012360 365 SRAGLLYQAEEFIKIMPAED----KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVA 440 (465)
Q Consensus 365 ~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 440 (465)
|..|++++|...|++....| ...+|..++.+..+.|+.+.|.+.|++.++++|+.+.....++......|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 77777777777777766555 34567777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhcC
Q 012360 441 EARRNMKELQT 451 (465)
Q Consensus 441 ~~~~~~~~~~~ 451 (465)
.++++....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 77776655544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-10 Score=97.22 Aligned_cols=199 Identities=14% Similarity=0.111 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHH
Q 012360 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261 (465)
Q Consensus 182 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (465)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~------ 102 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVL------ 102 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHH------
Confidence 3455566666666666666666666665532 2233444455555555666666666666555543 2223333
Q ss_pred HHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 012360 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQL 340 (465)
Q Consensus 262 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 340 (465)
..+...+...|++++|...+++..+....| ....+..+..++...|++++|...
T Consensus 103 -------------------------~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 103 -------------------------NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred -------------------------HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444455555555555555554432111 223444455556666666666666
Q ss_pred HHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 012360 341 FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKL 415 (465)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 415 (465)
+++.... .+.+...+..+...+...|++++|...+++... +.+...+..++..+...|+.++|..+.+.+...
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6666532 122344555666666666666666666655432 223344445555566666666666666655544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-12 Score=79.44 Aligned_cols=50 Identities=36% Similarity=0.444 Sum_probs=46.3
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcc
Q 012360 47 RDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96 (465)
Q Consensus 47 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 96 (465)
||+.+||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998874
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.5e-10 Score=109.40 Aligned_cols=225 Identities=12% Similarity=-0.050 Sum_probs=171.3
Q ss_pred CHHHHHHHHHHh-----ccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHh---------cCCHHHHHHHHhcCCC-
Q 012360 216 DEEVMVSVLSAC-----SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK---------CGSLEEALVTFYKTDC- 280 (465)
Q Consensus 216 ~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~- 280 (465)
+...|...+.+- ...++.++|...+++..+.. +.+...+..+..++.. .+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 344454555442 13456789999999998864 3345566666655542 2457899999987653
Q ss_pred --CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-hhh
Q 012360 281 --KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT-IEH 356 (465)
Q Consensus 281 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 356 (465)
.+...+..+...+...|++++|...+++..+. .|+ ...+..+..++...|++++|+..++++.+. .|+ ...
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~ 408 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAA 408 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhh
Confidence 36678888888999999999999999999987 454 567888889999999999999999999853 444 233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhc
Q 012360 357 FVCLVDLLSRAGLLYQAEEFIKIMPA--ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALE 433 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 433 (465)
+..++..+...|++++|...++++.. .| ++..+..+..++...|++++|...++++....|.+......++..|...
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 34445557778999999999988753 24 4455777888888999999999999998888888888888888888888
Q ss_pred CChHHHHHHHHHHHH
Q 012360 434 GHWTEVAEARRNMKE 448 (465)
Q Consensus 434 g~~~~a~~~~~~~~~ 448 (465)
| ++|...++.+.+
T Consensus 489 g--~~a~~~l~~ll~ 501 (553)
T PRK12370 489 S--ERALPTIREFLE 501 (553)
T ss_pred H--HHHHHHHHHHHH
Confidence 8 478877777654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.1e-08 Score=91.19 Aligned_cols=415 Identities=14% Similarity=0.075 Sum_probs=250.2
Q ss_pred hhHHHHHHHccCChHHHHHHhccCCCC--C-cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhc-c
Q 012360 21 GNSLIHFYGRMALFTDARVLFDKMPFR--D-VGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACA-R 96 (465)
Q Consensus 21 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~-~ 96 (465)
.-.....+...|++++|++.++.-... | ..........+.+.|+.++|..+|..+.+.+ |+...|...+..+. .
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhh
Confidence 334456778899999999999876532 3 3456677889999999999999999999975 66666655554443 1
Q ss_pred -----hhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHH-HHHHHhhCCCCCchhHHHHHHHHHhcCChHHH
Q 012360 97 -----LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEA-LRLFDEMGSRRNIVSLNILINGYIDMELVDLA 170 (465)
Q Consensus 97 -----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 170 (465)
..+.+...++++.+...- |.......+.-.+.....+... ...+..+-.+.-+.+++.+-..|....+..-.
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHH
Confidence 124566778888776653 3222222222222222223222 22223331122234555565666655555555
Q ss_pred HHHHHHhh------------------cCCh--HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcc
Q 012360 171 REVFDEIV------------------DKDI--VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD-EEVMVSVLSACSS 229 (465)
Q Consensus 171 ~~~~~~~~------------------~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~ 229 (465)
.+++.... .|+. .++..+...|...|++++|++++++.++. .|+ ...|..-.+.+-+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHH
Confidence 55555441 1222 34566778888999999999999999885 455 5677788888999
Q ss_pred chhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh----------hH--HHHHHHHHHcC
Q 012360 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV----------TW--TTMIEGLANYG 297 (465)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~--~~l~~~~~~~~ 297 (465)
.|++.+|...++...... ..|..+-+..+..+.+.|++++|.+++....+++.. .| .....+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998875 446677777888899999999999988766544311 22 33467788999
Q ss_pred ChHHHHHHHHHHHHC--CC---CCCHH----------HHHHHHHHHHhcC-------CHHHHHHHHHHhhcCCCCCCCh-
Q 012360 298 LGNEALRVFYQMERK--GI---KPNEA----------TFVSVLAACRHSG-------LITEGCQLFRRMGGVYRVQPTI- 354 (465)
Q Consensus 298 ~~~~a~~~~~~m~~~--g~---~p~~~----------~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~- 354 (465)
++..|++-|..+.+. .+ +-|-+ +|..+++..-+.. -...|++++-.+..........
T Consensus 320 ~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~ 399 (517)
T PF12569_consen 320 DYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEE 399 (517)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccc
Confidence 988888766665432 00 22322 3333333222111 1234555555554321110000
Q ss_pred ----------hhHHHHHHHH---HhcCCHHHHHHHHHh-----------C----CCCCccchHHHHHHHHHhcC-ChHHH
Q 012360 355 ----------EHFVCLVDLL---SRAGLLYQAEEFIKI-----------M----PAEDKFISYKALLSACITYS-EFDLG 405 (465)
Q Consensus 355 ----------~~~~~l~~~~---~~~g~~~~A~~~~~~-----------~----~~~~~~~~~~~l~~~~~~~~-~~~~a 405 (465)
.--..+..-. .+....+++...-.. . ..+.|... ++.-+.+.. =.++|
T Consensus 400 ~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp---~GekL~~t~dPLe~A 476 (517)
T PF12569_consen 400 QEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDP---LGEKLLKTEDPLEEA 476 (517)
T ss_pred cccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCc---cHHHHhcCCcHHHHH
Confidence 0000011000 011111111111100 0 00112211 222333333 47889
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 012360 406 KKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445 (465)
Q Consensus 406 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 445 (465)
.++++-+.+..|++..+|..-...|.+.|++--|++.+.+
T Consensus 477 ~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 477 MKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 9999999999999999999999999999999998887764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.1e-10 Score=98.76 Aligned_cols=220 Identities=12% Similarity=-0.015 Sum_probs=133.7
Q ss_pred HHHcCChhHHHHHHHHHHHcC-CCCC--HHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 012360 192 CVKAKQPEEALELFKKMIDEG-VTPD--EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268 (465)
Q Consensus 192 ~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 268 (465)
....++.+.++.-+.+++... ..|+ ...|..+...+...|+.+.|...|++..+.. +.+...|+.+...+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCH
Confidence 334456677777777777532 2222 2345555666777788888888888877764 34567777788888888888
Q ss_pred HHHHHHHhcCCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 269 EEALVTFYKTDC--K-DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 269 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
++|...|++..+ | +..+|..+...+...|++++|.+.+++..+. .|+..........+...++.++|...+++..
T Consensus 115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 888888877542 3 4556777777777788888888888887765 4443221122222344567788888886655
Q ss_pred cCCCCCCChhhHHHHHHHHHhcCCHHHH--HHHHHh-CCCC-----CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 012360 346 GVYRVQPTIEHFVCLVDLLSRAGLLYQA--EEFIKI-MPAE-----DKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417 (465)
Q Consensus 346 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~-~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 417 (465)
. ...|+... ..+. ....|+...+ .+.+.. .... .....|..++..+...|++++|+..|+++++.+|
T Consensus 193 ~--~~~~~~~~-~~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 193 E--KLDKEQWG-WNIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred h--hCCccccH-HHHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3 22333222 1222 2334444333 222221 1111 1234677777788888888888888888888775
Q ss_pred CC
Q 012360 418 QS 419 (465)
Q Consensus 418 ~~ 419 (465)
.+
T Consensus 268 ~~ 269 (296)
T PRK11189 268 YN 269 (296)
T ss_pred ch
Confidence 43
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-08 Score=82.71 Aligned_cols=412 Identities=10% Similarity=-0.015 Sum_probs=204.0
Q ss_pred hhhHHHHHHHccCChHHHHHHhccCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHH-HHHhc
Q 012360 20 VGNSLIHFYGRMALFTDARVLFDKMPFR---DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL-FSACA 95 (465)
Q Consensus 20 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-~~~~~ 95 (465)
-+++.+..+.+..++++|++++..-.++ +....+.|..+|....++..|-+.|+.+... .|...-|... ...+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4555566666666677776666544322 4445566666666666666676666666553 4444444322 23334
Q ss_pred chhhhhhhhHHHHHHHHhCCccchhh--HHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHH
Q 012360 96 RLEKLHYGKTVHCYATKVGLEYMLNM--ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV 173 (465)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 173 (465)
+.+.+..|+++...|... ++... ...=.......+|+..+..+.++...+.+..+.+.......+.|+++.|.+-
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 455555566655555432 11110 0000111223455666666665553233444444444444455566666555
Q ss_pred HHHhhcC----ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-hccchhhHhHHHHHHHHHHcCC
Q 012360 174 FDEIVDK----DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA-CSSLSNLQYGRLVHRFILQNNI 248 (465)
Q Consensus 174 ~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~ 248 (465)
|+...+- ....||..+. ..+.|+.+.|++...++.++|++-.+. +++=+.. -.....+..... |..+
T Consensus 167 FqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDvrsvgNt~~----lh~S-- 238 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDVRSVGNTLV----LHQS-- 238 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCchhcccchHH----HHHH--
Confidence 5555332 2334443332 234455555665555555555442111 0000000 000000000000 0000
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 012360 249 TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-----DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323 (465)
Q Consensus 249 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 323 (465)
.-...+|.-...+.+.++++.|.+.+..|++. |+++...+.-.= ..+++-+..+-+.-+...+ +....||..
T Consensus 239 -al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFAN 315 (459)
T KOG4340|consen 239 -ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFAN 315 (459)
T ss_pred -HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHH
Confidence 01223444455667889999999999998853 666655543322 2345555555556566552 234579999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCC-CCChhhHHHHHHHHH-hcCCHHHHHHHHHhCCCCCccchHHHHHHHH-HhcC
Q 012360 324 VLAACRHSGLITEGCQLFRRMGGVYRV-QPTIEHFVCLVDLLS-RAGLLYQAEEFIKIMPAEDKFISYKALLSAC-ITYS 400 (465)
Q Consensus 324 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~-~~~~ 400 (465)
++-.||+..-++.|-.++-+-... .. -.+...|+ |++++. ..-..++|.+-++.+...-....-...+..- .+..
T Consensus 316 lLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~ 393 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHN 393 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999998888888887654421 11 12333333 334443 3445666666555443110000011111111 1111
Q ss_pred C----hHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCC
Q 012360 401 E----FDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTR 452 (465)
Q Consensus 401 ~----~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 452 (465)
+ ..++++-|++.++..- .+....++.|++..++..+.+.|+.-.+.--.
T Consensus 394 ~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~e 446 (459)
T KOG4340|consen 394 RDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEFCND 446 (459)
T ss_pred ccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhhhcc
Confidence 1 2234444455444431 12556678888999999999999876655433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.5e-08 Score=89.74 Aligned_cols=434 Identities=13% Similarity=0.054 Sum_probs=279.2
Q ss_pred hhhHHHHHHHccCChHHHHHHhccCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcc
Q 012360 20 VGNSLIHFYGRMALFTDARVLFDKMPFR---DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96 (465)
Q Consensus 20 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 96 (465)
.|..++..|- .+++...+++.+.+.+. ...+.....-.+...|+.++|.+....-.+.+ .-+.++|..+.-.+-.
T Consensus 10 lF~~~lk~yE-~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 10 LFRRALKCYE-TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHH-HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhh
Confidence 4455555554 34555555555554422 22333333344567799999999988877654 3466788888888888
Q ss_pred hhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCC-chhHHHHHHHHHhcCChHHHHHHH
Q 012360 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRRN-IVSLNILINGYIDMELVDLAREVF 174 (465)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 174 (465)
..++++|.+.+..+...+ +.|..++..+.-.-++.|+++........+ ...|+ ...|..+..++.-.|+...|..++
T Consensus 88 dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999886 667778887777777888888888777666 44554 456888888899999999999998
Q ss_pred HHhhc-----CChHHHHHH------HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHhccchhhHhHHHHHHH
Q 012360 175 DEIVD-----KDIVLWRSM------MHGCVKAKQPEEALELFKKMIDEGVTPDEEVM-VSVLSACSSLSNLQYGRLVHRF 242 (465)
Q Consensus 175 ~~~~~-----~~~~~~~~l------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~ 242 (465)
+...+ ++...+... .....+.|..++|.+.+..-... ..|...+ ..-...+.+.+++++|..++..
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 87632 344443322 23456788888888887665442 2233333 3344557789999999999999
Q ss_pred HHHcCCCCChhHHH-HHHHHHHhcCCHHHHH-HHHhcCCCC--ChhhHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 012360 243 ILQNNITQDAFVKT-ALIDMYSKCGSLEEAL-VTFYKTDCK--DVVTWTTM-IEGLANYGLGNEALRVFYQMERKGIKPN 317 (465)
Q Consensus 243 ~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~-~~~~~~~~~--~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 317 (465)
++..+ ||..-|. .+..++.+-.+..++. .+|....+. -...-..+ +.......-.+....++..+.+.|+++-
T Consensus 245 Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v 322 (700)
T KOG1156|consen 245 LLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV 322 (700)
T ss_pred HHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch
Confidence 99875 5555554 4444554333333333 555544321 00000000 1111112233445567777888887663
Q ss_pred HHHHHHHHHHHHhcCCHH---H-HHHHHHHhhcCC---------CCCCChhhH--HHHHHHHHhcCCHHHHHHHHHhCCC
Q 012360 318 EATFVSVLAACRHSGLIT---E-GCQLFRRMGGVY---------RVQPTIEHF--VCLVDLLSRAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~---~-a~~~~~~~~~~~---------~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (465)
-..+.++ |-.....+ + +..+...+.... .-+|+...| ..++..+-..|+++.|..+++....
T Consensus 323 f~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 323 FKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred hhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 3333332 22211111 1 111111111110 014555544 4678889999999999999998875
Q ss_pred C-C-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCC-----CCC
Q 012360 383 E-D-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTR-----KKP 455 (465)
Q Consensus 383 ~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~ 455 (465)
+ | -+..|..-.+.+...|+.++|...++++.+++..|..+-...+.-..++++.++|.++...+.+.|.. .+-
T Consensus 400 HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~m 479 (700)
T KOG1156|consen 400 HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEM 479 (700)
T ss_pred cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHh
Confidence 3 3 23345566688899999999999999999999777776668999999999999999999999877651 223
Q ss_pred CCeeeecC
Q 012360 456 GNSIIDLK 463 (465)
Q Consensus 456 ~~~~~~~~ 463 (465)
.+.|.+++
T Consensus 480 qcmWf~~E 487 (700)
T KOG1156|consen 480 QCMWFQLE 487 (700)
T ss_pred hhHHHhHh
Confidence 55666554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.1e-11 Score=98.29 Aligned_cols=196 Identities=12% Similarity=0.046 Sum_probs=164.4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 012360 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTD--CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATF-VSVLA 326 (465)
Q Consensus 250 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~l~~ 326 (465)
.|-.--+.+..+|.+.|.+.+|.+.|+... .|-+.+|..|-..|.+.++++.|+.++.+-.+. .|-.+|| .-..+
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQAR 298 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHH
Confidence 344444678899999999999999998755 467789999999999999999999999998877 7777666 45568
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHH
Q 012360 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDL 404 (465)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 404 (465)
.+...++.++|.++|+...+. .+.+++...++...|.-.++++-|+.+++++.. -.++..|+.+.-+|.-.+++|-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhh
Confidence 888999999999999999863 345677777888888999999999999999865 3378889999999999999999
Q ss_pred HHHHHHHHHHhC--C-CCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 405 GKKVANNMMKLG--N-QSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 405 a~~~~~~~~~~~--p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
++..|+++...- | ....+|+.++....-.|++.-|.+.|+-....
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence 999999999854 3 23457999999999999999999988866543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.3e-12 Score=77.17 Aligned_cols=50 Identities=32% Similarity=0.547 Sum_probs=45.3
Q ss_pred CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc
Q 012360 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229 (465)
Q Consensus 180 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 229 (465)
||+.+||.+|++|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998874
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.4e-08 Score=84.28 Aligned_cols=297 Identities=10% Similarity=-0.039 Sum_probs=212.4
Q ss_pred hCCCCCchhHHHHHHHHHh--cCChHHHHHHHHHh-----hcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH
Q 012360 145 MGSRRNIVSLNILINGYID--MELVDLAREVFDEI-----VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDE 217 (465)
Q Consensus 145 ~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 217 (465)
....|...+....+.+++. .++...|...+-.+ .+.|++....+...+...|+.++|...|++.... .|+.
T Consensus 188 ~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~ 265 (564)
T KOG1174|consen 188 ATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDN 265 (564)
T ss_pred eecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhh
Confidence 3445555555556665554 34444444444333 3348899999999999999999999999998763 4443
Q ss_pred HH-HHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---hhhHHHHHHHH
Q 012360 218 EV-MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD---VVTWTTMIEGL 293 (465)
Q Consensus 218 ~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~ 293 (465)
.+ .....-.+...|+.+....+...+.... ..+...|..-........+++.|+.+-++.++.+ +..+-.-..++
T Consensus 266 i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL 344 (564)
T KOG1174|consen 266 VEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLL 344 (564)
T ss_pred hhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHH
Confidence 22 1222223456778877777777665542 2233344444555666789999999998877544 44555555778
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHH-HHHH-hcCCH
Q 012360 294 ANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV-DLLS-RAGLL 370 (465)
Q Consensus 294 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~ 370 (465)
...+++++|.-.|+..... .| +...|..|+.+|...|...+|.-.-..... -++.+..+...+. ..+. .-..-
T Consensus 345 ~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhH
Confidence 8999999999999998765 65 458999999999999999999988887775 3445566655442 2222 22346
Q ss_pred HHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 371 YQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 371 ~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
++|.+++++-.. +| -....+.+...+...|.+++++.++++.+...|+..- ...|++.+...+.+.+|...|....+
T Consensus 421 EKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~L-H~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 421 EKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNL-HNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHH-HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 789999988654 45 3455677778888999999999999999998888765 99999999999999999999987654
Q ss_pred h
Q 012360 449 L 449 (465)
Q Consensus 449 ~ 449 (465)
.
T Consensus 500 ~ 500 (564)
T KOG1174|consen 500 Q 500 (564)
T ss_pred c
Confidence 3
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.9e-09 Score=92.66 Aligned_cols=215 Identities=13% Similarity=-0.002 Sum_probs=140.0
Q ss_pred chhhHhHHHHHHHHHHcC-CCC--ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHH
Q 012360 230 LSNLQYGRLVHRFILQNN-ITQ--DAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEAL 303 (465)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 303 (465)
.+..+.++.-+.+++... ..| ....|..+...|...|+.++|...|++.. +.+...|+.+...+...|++++|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345666666676666532 122 23456777778888888888888887654 235678888888888888888888
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012360 304 RVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 304 ~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (465)
..|++..+. .|+ ..++..+..++...|++++|++.+++..+. .|+..........+...+++++|...+.+...
T Consensus 119 ~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 119 EAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 888888876 554 467777777888888888888888888753 34332222222234456778888888865432
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHH-------HhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcC
Q 012360 383 EDKFISYKALLSACITYSEFDLGKKVANNMM-------KLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 383 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 451 (465)
..+...|.. .......|+...+ +.++.+. +..|..+..|..++..+.+.|++++|...|++..+.++
T Consensus 194 ~~~~~~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 194 KLDKEQWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred hCCccccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 212222321 2222335555443 2444443 44566667788888888888888888888888776554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.5e-09 Score=94.88 Aligned_cols=225 Identities=19% Similarity=0.191 Sum_probs=145.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHhh--------C-CCCCchhH-HHHHHHHHhcCChHHHHHHHHHhhc-------C---
Q 012360 121 MENALLLMYAKCKEMDEALRLFDEM--------G-SRRNIVSL-NILINGYIDMELVDLAREVFDEIVD-------K--- 180 (465)
Q Consensus 121 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~-------~--- 180 (465)
+...+...|...|+++.|..+++.. | ..|...+. +.+...|...+++++|..+|+++.. +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444666666666666666666554 1 12333322 2355566666777777766666522 1
Q ss_pred -ChHHHHHHHHHHHHcCChhHHHHHHHHHHH-----cCCC-CCH-HHHHHHHHHhccchhhHhHHHHHHHHHHc---CCC
Q 012360 181 -DIVLWRSMMHGCVKAKQPEEALELFKKMID-----EGVT-PDE-EVMVSVLSACSSLSNLQYGRLVHRFILQN---NIT 249 (465)
Q Consensus 181 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~ 249 (465)
-..+++.|..+|.+.|++++|...++...+ .|.. |.. ..++.+...|...+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 234566667777888887777777666543 1222 222 23455556677788888888877765542 111
Q ss_pred ----CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----------ChhhHHHHHHHHHHcCChHHHHHHHHHHH----
Q 012360 250 ----QDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-----------DVVTWTTMIEGLANYGLGNEALRVFYQME---- 310 (465)
Q Consensus 250 ----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~---- 310 (465)
....+++.+...|...|++++|.++++++... ....++.|...|.+.+++.+|.++|.+..
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22457888999999999999999888765521 12367778888888899988888887743
Q ss_pred HCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 311 RKGI-KPN-EATFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 311 ~~g~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
..|. .|+ ..+|..|...|...|+++.|+++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2332 233 3578888899999999999998888775
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5e-08 Score=82.29 Aligned_cols=380 Identities=10% Similarity=0.021 Sum_probs=224.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCCh
Q 012360 56 MSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM 135 (465)
Q Consensus 56 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 135 (465)
+.-+...++++.|+.+++--...+-.-...+-.-+.-++.+.|++++|...+..+.... .++...+..|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 55567788999999998876543322111222223445568899999999999888754 66677777788888888999
Q ss_pred HHHHHHHHhhCCCCCchhH-HHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 012360 136 DEALRLFDEMGSRRNIVSL-NILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT 214 (465)
Q Consensus 136 ~~A~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 214 (465)
.+|..+-.+. |+.... ..+.....+.++-++-..+-+.+.... .---++....-..-++++|+++|...+.. .
T Consensus 108 ~eA~~~~~ka---~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n 181 (557)
T KOG3785|consen 108 IEAKSIAEKA---PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD--N 181 (557)
T ss_pred HHHHHHHhhC---CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc--C
Confidence 9999988774 444444 445555667777766666655554332 22223344444445789999999998874 4
Q ss_pred CCHHHHHHHHHH-hccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHh--cCCHHHH--HHHHhcCCC---------
Q 012360 215 PDEEVMVSVLSA-CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK--CGSLEEA--LVTFYKTDC--------- 280 (465)
Q Consensus 215 ~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a--~~~~~~~~~--------- 280 (465)
|.-...+.-+.. |.+..-++-+.++++-..+. ++.++...+.......+ .|+..++ .++-+.+.+
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 555555555544 56777788888888776664 23344444444433333 2332222 122221111
Q ss_pred -C---------------------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-H----hcCC
Q 012360 281 -K---------------------DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC-R----HSGL 333 (465)
Q Consensus 281 -~---------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~-~----~~~~ 333 (465)
. -+..--.|+--|.+.+++.+|..+.+++.-. .|-......++.+- . ....
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHH
Confidence 0 1112223344566778888888776654321 23222222222221 1 1122
Q ss_pred HHHHHHHHHHhhcCCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHH
Q 012360 334 ITEGCQLFRRMGGVYRVQ-PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVAN 410 (465)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 410 (465)
..-|.+.|+-.-.. +.. .++..-.++...+.-..++++.+-.++.+.. ..|....-.+..+.+..|++.+|+++|-
T Consensus 339 lKiAqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHh
Confidence 44566666655433 222 2333344556666666778888887777765 2223333346778888889999988887
Q ss_pred HHHHhCCCCchh-HHHHHHHHhhcCChHHHHHHHHHH
Q 012360 411 NMMKLGNQSHEA-YVLLSNFYALEGHWTEVAEARRNM 446 (465)
Q Consensus 411 ~~~~~~p~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~ 446 (465)
+.....-.+..+ ...|+.+|.+.|+.+-|+.++-++
T Consensus 418 ~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 418 RISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 776655333333 456788888888888887766543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-08 Score=93.35 Aligned_cols=287 Identities=12% Similarity=0.094 Sum_probs=139.9
Q ss_pred HHHHHhCCChHHHHHHHHhh-CCCCCch-hHHHHHHHHHhcCChHHHHHHHHHhhcC--Ch-HHHHHHHHHHHHc-----
Q 012360 126 LLMYAKCKEMDEALRLFDEM-GSRRNIV-SLNILINGYIDMELVDLAREVFDEIVDK--DI-VLWRSMMHGCVKA----- 195 (465)
Q Consensus 126 ~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-~~~~~l~~~~~~~----- 195 (465)
...+...|++++|++.++.- ..-+|.. ........+.+.|+.++|..++..++.. +- .-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 34556677777777777665 3333433 3445556666777777777777777443 22 2333444443222
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhH-hHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 012360 196 KQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQ-YGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274 (465)
Q Consensus 196 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 274 (465)
.+.+...++|+++... -|.......+.-.+.....+. .+..++..+...|+|+ +|+.+-..|....+..-..++
T Consensus 91 ~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 2355556666666553 233333332222222222332 3445555555666433 344444444433222222222
Q ss_pred HhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----------CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHH
Q 012360 275 FYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK----------GIKPNE--ATFVSVLAACRHSGLITEGCQLFR 342 (465)
Q Consensus 275 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----------g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~ 342 (465)
+... ...+... .-.|+. .++..+.+.|...|++++|+++++
T Consensus 166 ~~~~---------------------------~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id 218 (517)
T PF12569_consen 166 VEEY---------------------------VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYID 218 (517)
T ss_pred HHHH---------------------------HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 2110 0000000 012222 233444455556666666666666
Q ss_pred HhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhC--C
Q 012360 343 RMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLG--N 417 (465)
Q Consensus 343 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p 417 (465)
+.++. .| .+..|..-.+.+.+.|++.+|.+.++..+. ..|...-+-.+..+.++|+.++|.+++......+ |
T Consensus 219 ~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 219 KAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 66632 23 255555566666666666666666665543 1244444445555556666666666666554433 1
Q ss_pred CC-------chhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 418 QS-------HEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 418 ~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
.. .......+.+|.+.|++..|++.+..+.
T Consensus 296 ~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 296 LSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11 0112344666666777666666555443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.3e-07 Score=81.34 Aligned_cols=402 Identities=10% Similarity=0.040 Sum_probs=252.6
Q ss_pred HHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHh
Q 012360 35 TDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYATKV 113 (465)
Q Consensus 35 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 113 (465)
+.++.++.+| ...|-..+..+.++|+...-...|++.... .+......|...+......+-++.+..++++.++.
T Consensus 92 er~lv~mHkm----pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~ 167 (835)
T KOG2047|consen 92 ERCLVFMHKM----PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV 167 (835)
T ss_pred HHHHHHHhcC----CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 4444444444 356777788888999999999999887653 23334456777888777788888899999888864
Q ss_pred CCccchhhHHHHHHHHHhCCChHHHHHHHHhh---------CCCCCchhHHHHHHHHHhcCC---hHHHHHHHHHhhcC-
Q 012360 114 GLEYMLNMENALLLMYAKCKEMDEALRLFDEM---------GSRRNIVSLNILINGYIDMEL---VDLAREVFDEIVDK- 180 (465)
Q Consensus 114 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~- 180 (465)
. | ..-+-.+..+++.+++++|-+.+... .-+.+...|..+.+...+..+ --....+++.+..+
T Consensus 168 ~--P--~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf 243 (835)
T KOG2047|consen 168 A--P--EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF 243 (835)
T ss_pred C--H--HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC
Confidence 3 2 33567788888999999999988887 112344456666666555433 23344556665443
Q ss_pred ---ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccch----------------------hhHh
Q 012360 181 ---DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS----------------------NLQY 235 (465)
Q Consensus 181 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------------~~~~ 235 (465)
-...|+.|...|.+.|++++|..+|++....-. +..-|+.+..+|+.-. +++.
T Consensus 244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~ 321 (835)
T KOG2047|consen 244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLEL 321 (835)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHH
Confidence 346799999999999999999999998876422 2222333333332111 1222
Q ss_pred HHHHHHHHHHcCC-----------CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---C------ChhhHHHHHHHHHH
Q 012360 236 GRLVHRFILQNNI-----------TQDAFVKTALIDMYSKCGSLEEALVTFYKTDC---K------DVVTWTTMIEGLAN 295 (465)
Q Consensus 236 a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~------~~~~~~~l~~~~~~ 295 (465)
...-|+.+..... +.+...|..-+. ...|+..+....|.+... | -...|..+...|-.
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~ 399 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYEN 399 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHh
Confidence 3333444333211 111222222222 224555555555554331 1 12367888888999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC----------------CChhh
Q 012360 296 YGLGNEALRVFYQMERKGIKPN---EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ----------------PTIEH 356 (465)
Q Consensus 296 ~~~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------~~~~~ 356 (465)
.|+.+.|..+|++..+-..+-- ..+|..-...-.+..+++.|+++.+.+......+ .+...
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki 479 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI 479 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence 9999999999998876533221 2344444455556778888999888887431110 01234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCC--CccchHHHHHHHHHhcCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHhh
Q 012360 357 FVCLVDLLSRAGLLYQAEEFIKIMPAE--DKFISYKALLSACITYSEFDLGKKVANNMMKLG--NQSHEAYVLLSNFYAL 432 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~ 432 (465)
|..+++..-..|-++....+++++..- -.+.........+-.+.-++++.++|++-+.+. |.-..+|+..+.-+.+
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK 559 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence 556667777788888888888887641 133333333444556777899999999999877 4445566666555543
Q ss_pred ---cCChHHHHHHHHHHHH
Q 012360 433 ---EGHWTEVAEARRNMKE 448 (465)
Q Consensus 433 ---~g~~~~a~~~~~~~~~ 448 (465)
..+.+.|+.+|++..+
T Consensus 560 rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 560 RYGGTKLERARDLFEQALD 578 (835)
T ss_pred HhcCCCHHHHHHHHHHHHh
Confidence 2467889999998877
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.2e-09 Score=82.94 Aligned_cols=193 Identities=15% Similarity=0.051 Sum_probs=150.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 012360 254 VKTALIDMYSKCGSLEEALVTFYKTDCK---DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLAACR 329 (465)
Q Consensus 254 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~ 329 (465)
+...+.-.|...|+...|..-+++..+. +..+|..+...|.+.|..+.|.+-|++.... .|+ ....|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHH
Confidence 4455677788888888888888877643 3447788888888889999999988888876 554 467777777888
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHH
Q 012360 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKK 407 (465)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~ 407 (465)
..|.+++|.+.|+++........-..+|..+.-+..+.|+++.|.+.|++... .| .+.+...+.....+.|++-.|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 88899999999998887644445567888888888889999999998887654 33 56677788888888899999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 408 VANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 408 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
.++.....++.........+..-.+.|+-+.+-++=..+.+
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99888888877777777777888888888888776665543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.6e-09 Score=92.26 Aligned_cols=250 Identities=10% Similarity=0.067 Sum_probs=166.7
Q ss_pred HHHhcCChHHHHHHHHHhhcC----ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHh
Q 012360 160 GYIDMELVDLAREVFDEIVDK----DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQY 235 (465)
Q Consensus 160 ~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 235 (465)
-+.-.|++..++.-.+ .... +......+.+++...|+.+.++. ++... -.|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHH
Confidence 3445566666664444 2111 23345566788888888775543 33333 36666666666655555455555
Q ss_pred HHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 012360 236 GRLVHRFILQNNIT-QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI 314 (465)
Q Consensus 236 a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 314 (465)
+..-++........ .+..........+...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-- 160 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI-- 160 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 55555544433323 23333334445666789999999998876 46667777889999999999999999999865
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-C-Cccch
Q 012360 315 KPNEATFVSVLAACRH----SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-E-DKFIS 388 (465)
Q Consensus 315 ~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~ 388 (465)
..| .+...+..++.. .+.+.+|..+|+++.+ ..++++.+.+.+..++...|++++|.+++.+... . .++.+
T Consensus 161 ~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~ 237 (290)
T PF04733_consen 161 DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDT 237 (290)
T ss_dssp SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHH
T ss_pred CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHH
Confidence 333 444555555443 3469999999999986 4567888899999999999999999999987654 3 36777
Q ss_pred HHHHHHHHHhcCCh-HHHHHHHHHHHHhCCCCch
Q 012360 389 YKALLSACITYSEF-DLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 389 ~~~l~~~~~~~~~~-~~a~~~~~~~~~~~p~~~~ 421 (465)
+..++.+....|+. +.+.+.+.++.+..|+++.
T Consensus 238 LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 238 LANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 77888887888887 7788899999999998775
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-07 Score=84.58 Aligned_cols=392 Identities=10% Similarity=-0.029 Sum_probs=240.8
Q ss_pred HHHHccCChHHHHHHhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch-hhHHHHHHHhcchhhhh
Q 012360 26 HFYGRMALFTDARVLFDKMP---FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADK-ITLVILFSACARLEKLH 101 (465)
Q Consensus 26 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~~ 101 (465)
++....|+++.|+.+|-+.. ++|-..|+.=..+|...|++++|++=-.+-++. .|+= -.|+....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 45567899999999998755 557778888888999999999998877666653 4553 36888888888899999
Q ss_pred hhhHHHHHHHHhCCccchhhHHHHHHHHHhCCCh---HHHHHHHHhhCCCC------CchhHHHHHHHHHh---------
Q 012360 102 YGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM---DEALRLFDEMGSRR------NIVSLNILINGYID--------- 163 (465)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~------~~~~~~~l~~~~~~--------- 163 (465)
+|...|..-++.. +.+...++.+..++...... -.--.++..+...| ....|..++..+-+
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999999888764 44555666677666211000 00001111110011 11122222222221
Q ss_pred -cCChHHHHHHHHHh----------------hcC----------------------ChHHHHHHHHHHHHcCChhHHHHH
Q 012360 164 -MELVDLAREVFDEI----------------VDK----------------------DIVLWRSMMHGCVKAKQPEEALEL 204 (465)
Q Consensus 164 -~~~~~~a~~~~~~~----------------~~~----------------------~~~~~~~l~~~~~~~g~~~~a~~~ 204 (465)
-.++..+.-.+... ..| -..-...+.++..+..+++.|.+-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 11111121111111 000 011244566777778888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHH-------HHHHHHHhcCCHHHHHHHHhc
Q 012360 205 FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT-------ALIDMYSKCGSLEEALVTFYK 277 (465)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~a~~~~~~ 277 (465)
+....+.. -+..-++....++...|.+..+........+.|... ..-|+ .+..+|.+.++++.+...|.+
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 88887753 344455666677888888888777777666655321 12222 233456666778888888776
Q ss_pred CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhh
Q 012360 278 TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE-ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356 (465)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 356 (465)
...+... -....+....+++........-. .|.. .....-...+.+.|++..|+..|.+++.. .+-|...
T Consensus 324 aLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~l 394 (539)
T KOG0548|consen 324 ALTEHRT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARL 394 (539)
T ss_pred HhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHH
Confidence 4422111 11122233445555544443322 3332 12223356778889999999999998864 3557888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhh
Q 012360 357 FVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL 432 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 432 (465)
|..-.-+|.+.|.+..|++-.+.... +| ....|..-+.++....+++.|.+.|++.++.+|.+..+...+..+...
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 88888899999999988887665543 33 334455555566667789999999999999999888866666666654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.8e-08 Score=81.15 Aligned_cols=302 Identities=13% Similarity=0.078 Sum_probs=178.8
Q ss_pred cchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCC-chhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHH---HHHH
Q 012360 117 YMLNMENALLLMYAKCKEMDEALRLFDEM-GSRRN-IVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRS---MMHG 191 (465)
Q Consensus 117 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---l~~~ 191 (465)
.++.-..-+.+.+...|++..|+.-|... ...|+ -.++-.-...|...|+...|+.-+.+..+..+..+.+ -...
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 44555566777788888888888888776 22332 2233334456777788888887777775433333333 2345
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCH--H------------HHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHH
Q 012360 192 CVKAKQPEEALELFKKMIDEGVTPDE--E------------VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257 (465)
Q Consensus 192 ~~~~g~~~~a~~~~~~~~~~~~~~~~--~------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 257 (465)
+.++|.+++|..-|+..++....... . .....+..+...|+...|+.....+++.. +-+...+..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~ 194 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQA 194 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHH
Confidence 77888888888888888775332110 1 11223334556677777777777776643 445566666
Q ss_pred HHHHHHhcCCHHHHHHHHhc---CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH----HHHH---HH-
Q 012360 258 LIDMYSKCGSLEEALVTFYK---TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT----FVSV---LA- 326 (465)
Q Consensus 258 l~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----~~~l---~~- 326 (465)
-..+|...|++..|+.-++. +...+...+-.+-..+...|+.+.++...++-.+. .||... |..| ..
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHH
Confidence 67777777777777655543 33445566666666677777777777777766655 555432 2111 11
Q ss_pred -----HHHhcCCHHHHHHHHHHhhcCCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHH
Q 012360 327 -----ACRHSGLITEGCQLFRRMGGVYRVQPT-----IEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLS 394 (465)
Q Consensus 327 -----~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~ 394 (465)
.....++|.+++...+...+. .|. ...+..+-.++...|++.+|+....++.. .| |+.++..-..
T Consensus 273 les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 122345666666666665532 232 22233444555566667777766666543 23 4566666666
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCchhHH
Q 012360 395 ACITYSEFDLGKKVANNMMKLGNQSHEAYV 424 (465)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 424 (465)
+|.-...++.|+.-|+++.+.+|++..+-.
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 666666777777777777777766655333
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-07 Score=88.10 Aligned_cols=73 Identities=15% Similarity=0.133 Sum_probs=31.4
Q ss_pred ccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 012360 228 SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFY 307 (465)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 307 (465)
.....+.+|+.+++.+...+. -..-|..+...|...|+++.|.++|-+.. .++-.|..|.+.|++++|.++-.
T Consensus 743 i~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHH
Confidence 334444444444444443321 12233344444555555555555543322 23333444455555555544433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-06 Score=78.35 Aligned_cols=380 Identities=12% Similarity=0.056 Sum_probs=207.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCCh
Q 012360 56 MSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM 135 (465)
Q Consensus 56 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 135 (465)
+..+...|++++|.....++...+ +-|...+..-+-+....+.+++|+.+.+.-... ..+...+---.-+..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 455677889999999999998865 445556777777888999999998554432110 11111111223344578999
Q ss_pred HHHHHHHHhhCCCCCc-hhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHH-------------------------
Q 012360 136 DEALRLFDEMGSRRNI-VSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMM------------------------- 189 (465)
Q Consensus 136 ~~A~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~------------------------- 189 (465)
|+|+..++-. .++. .+...-...+.+.|++++|.++|+.+.+.+...+..-+
T Consensus 96 Dealk~~~~~--~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~ 173 (652)
T KOG2376|consen 96 DEALKTLKGL--DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPED 173 (652)
T ss_pred HHHHHHHhcc--cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcc
Confidence 9999999944 4443 36666678889999999999999998554333332222
Q ss_pred ---------HHHHHcCChhHHHHHHHHHHHcC-------CCCCHH-------HHHHHHHHhccchhhHhHHHHHHHHHHc
Q 012360 190 ---------HGCVKAKQPEEALELFKKMIDEG-------VTPDEE-------VMVSVLSACSSLSNLQYGRLVHRFILQN 246 (465)
Q Consensus 190 ---------~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 246 (465)
..++..|++.+|+++++...+.+ -.-+.. .-.-+.-++-..|+.++|..++....+.
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 22334445555555544442110 000000 0011122233444444555544444444
Q ss_pred CCCCChhH----HHHHHHHHHhcCCHH--HHHHHHhcCCCC---------------ChhhHHHHHHHHHHcCChHHHHHH
Q 012360 247 NITQDAFV----KTALIDMYSKCGSLE--EALVTFYKTDCK---------------DVVTWTTMIEGLANYGLGNEALRV 305 (465)
Q Consensus 247 ~~~~~~~~----~~~l~~~~~~~~~~~--~a~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~ 305 (465)
+. +|... .|.|+.. ....++- .++..++..... .+..-+.++..| .+..+.+.++
T Consensus 254 ~~-~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~ 329 (652)
T KOG2376|consen 254 NP-ADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVREL 329 (652)
T ss_pred cC-CCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHH
Confidence 31 11111 1111111 1100100 111111111100 000011111111 1222333332
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHH----
Q 012360 306 FYQMERKGIKPNEATFVSVLAACR--HSGLITEGCQLFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIK---- 378 (465)
Q Consensus 306 ~~~m~~~g~~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~---- 378 (465)
..... +..|. ..+..++..+. +...+..+..++....+. .+- ...+....+......|+++.|.+++.
T Consensus 330 ~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 330 SASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 22211 11333 33444444433 223577888888888753 222 24556677788899999999999998
Q ss_pred ----hCCC-CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhC----CC---CchhHHHHHHHHhhcCChHHHHHHHHHH
Q 012360 379 ----IMPA-EDKFISYKALLSACITYSEFDLGKKVANNMMKLG----NQ---SHEAYVLLSNFYALEGHWTEVAEARRNM 446 (465)
Q Consensus 379 ----~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 446 (465)
.+.. ...+.+...+...+.+.++.+.|..++.+++..- +. -..++..++..-.+.|+-++|...++++
T Consensus 405 ~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel 484 (652)
T KOG2376|consen 405 SWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEEL 484 (652)
T ss_pred hhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHH
Confidence 4433 2345566677777888888888999998887721 22 2224556666667889999999999998
Q ss_pred HHh
Q 012360 447 KEL 449 (465)
Q Consensus 447 ~~~ 449 (465)
.+.
T Consensus 485 ~k~ 487 (652)
T KOG2376|consen 485 VKF 487 (652)
T ss_pred HHh
Confidence 764
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4e-07 Score=76.66 Aligned_cols=290 Identities=9% Similarity=0.014 Sum_probs=173.0
Q ss_pred hhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCCchh-HHHHHHHHH
Q 012360 85 ITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRRNIVS-LNILINGYI 162 (465)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~-~~~l~~~~~ 162 (465)
.-..-+...+...|++..|+.-|...++.+ +.+-.++-.-...|...|+-.-|+.-+.+. ..+||-.. -..-...+.
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 334456666666777777777777666542 112222233345666677766666666665 55666443 223345666
Q ss_pred hcCChHHHHHHHHHhhcCCh------H------------HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012360 163 DMELVDLAREVFDEIVDKDI------V------------LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVL 224 (465)
Q Consensus 163 ~~~~~~~a~~~~~~~~~~~~------~------------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 224 (465)
+.|.+++|..-|+.+.+.++ . .....+..+...|+...|+.....+++- .+.|...+..-.
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Ra 196 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARA 196 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHH
Confidence 77788888777777744311 1 1112233455667777777777777764 244666666667
Q ss_pred HHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChh----hHHHH---------
Q 012360 225 SACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--KDVV----TWTTM--------- 289 (465)
Q Consensus 225 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~----~~~~l--------- 289 (465)
.+|...|++..|+.-++...+.. ..+...+..+...+...|+.+.++...++..+ ||.. .|..+
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHH
Confidence 77777777777777666665543 33455555666777777777777777766553 3221 22222
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC--HHH---HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHH
Q 012360 290 IEGLANYGLGNEALRVFYQMERKGIKPN--EAT---FVSVLAACRHSGLITEGCQLFRRMGGVYRVQP-TIEHFVCLVDL 363 (465)
Q Consensus 290 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~ 363 (465)
+......+++.++.+..+...+. .|. ... +..+-.++...|++.+|++...++.. +.| |+.++..-..+
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---~d~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---IDPDDVQVLCDRAEA 350 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh---cCchHHHHHHHHHHH
Confidence 11233455666666666666665 343 222 23333555566777777777777773 344 36677777777
Q ss_pred HHhcCCHHHHHHHHHhCCC
Q 012360 364 LSRAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 364 ~~~~g~~~~A~~~~~~~~~ 382 (465)
|.-...++.|+.-|+...+
T Consensus 351 ~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 351 YLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HhhhHHHHHHHHHHHHHHh
Confidence 7777777777777776654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.3e-07 Score=81.39 Aligned_cols=259 Identities=10% Similarity=-0.023 Sum_probs=142.6
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHH---HHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 012360 190 HGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS---VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG 266 (465)
Q Consensus 190 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (465)
..+...|++++|.+.+++..+.. +.+...+.. ........+..+.+.+.+.. .....+........+...+...|
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcC
Confidence 34556677777777777766642 222223221 11111123334444444433 11111222334445566777778
Q ss_pred CHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHH
Q 012360 267 SLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGI-KPNE--ATFVSVLAACRHSGLITEGCQL 340 (465)
Q Consensus 267 ~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~--~~~~~l~~~~~~~~~~~~a~~~ 340 (465)
++++|...+++.. +.+...+..+...+...|++++|..++++...... .|+. ..|..+...+...|++++|..+
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888877777654 23455667777778888888888888887766421 1222 2345667777888888888888
Q ss_pred HHHhhcCCCCCCChhhH-H--HHHHHHHhcCCHHHHHHH---HHhCCCC-C-ccchH--HHHHHHHHhcCChHHHHHHHH
Q 012360 341 FRRMGGVYRVQPTIEHF-V--CLVDLLSRAGLLYQAEEF---IKIMPAE-D-KFISY--KALLSACITYSEFDLGKKVAN 410 (465)
Q Consensus 341 ~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~~~~-~-~~~~~--~~l~~~~~~~~~~~~a~~~~~ 410 (465)
++++.......+..... + .++..+...|....+.++ ....... + ....+ .....++...|+.+.|...++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 88875321111111111 1 222333334433333322 1111111 1 11112 245566678888999999988
Q ss_pred HHHHhC-C--------CCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 411 NMMKLG-N--------QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 411 ~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
.+.... . .........+.++...|++++|.+.+.......
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 887633 1 123345566777889999999999888776543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-09 Score=93.62 Aligned_cols=245 Identities=8% Similarity=-0.020 Sum_probs=166.0
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 012360 190 HGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269 (465)
Q Consensus 190 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (465)
+-+.-.|++..++.-.+ ........+......+.+++...|+.+.+. .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44556788888887665 322222223344556677788888766543 4443433 666666666655555445666
Q ss_pred HHHHHHhcCC-CC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 012360 270 EALVTFYKTD-CK----DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344 (465)
Q Consensus 270 ~a~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 344 (465)
.+..-+++.. .+ +..........+...|++++|++++..- .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6766665433 22 2222222234466679999999888642 35667777889999999999999999999
Q ss_pred hcCCCCCCChhhHHHHHHHHH----hcCCHHHHHHHHHhCCCC--CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 012360 345 GGVYRVQPTIEHFVCLVDLLS----RAGLLYQAEEFIKIMPAE--DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418 (465)
Q Consensus 345 ~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 418 (465)
.+. ..| .+...+..++. ..+.+.+|..+|+++..+ +++.+.+.+..++...|++++|.++++++.+.+|.
T Consensus 158 ~~~---~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQI---DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCC---SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hhc---CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 853 334 33344444443 344799999999998664 46777888999999999999999999999999999
Q ss_pred CchhHHHHHHHHhhcCCh-HHHHHHHHHHHHh
Q 012360 419 SHEAYVLLSNFYALEGHW-TEVAEARRNMKEL 449 (465)
Q Consensus 419 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 449 (465)
++.+...++.+....|+. +.+.+++.+++..
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999999988 6678888887764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-06 Score=81.90 Aligned_cols=234 Identities=12% Similarity=0.074 Sum_probs=140.7
Q ss_pred cchhhhHHHH--HHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc-C--------CCCchh
Q 012360 17 DIYVGNSLIH--FYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFE-G--------IVADKI 85 (465)
Q Consensus 17 ~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~--------~~~~~~ 85 (465)
|..|-..+++ .|..-|+.+.|.+-.+.+. +...|..+.+.|.+.++.+-|.-.+-.|... | ..|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 4444455544 4666788888877766654 3467889999999988888887776665431 1 1222 2
Q ss_pred hHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcC
Q 012360 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDME 165 (465)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~ 165 (465)
+=..+.......|-+++|+.++.+-.+. ..|=+.|...|.+++|.++-+.-..--=..||......+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 2223333445678888999988887764 3344567778999999888765421112346666677777788
Q ss_pred ChHHHHHHHHHhhcC-----------------------ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 012360 166 LVDLAREVFDEIVDK-----------------------DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS 222 (465)
Q Consensus 166 ~~~~a~~~~~~~~~~-----------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 222 (465)
+.+.|++.|++...+ |...|......+-..|+.+.|+.+|....+ |-.
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs 943 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFS 943 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhh
Confidence 888888888765322 333344444444445555555555554432 334
Q ss_pred HHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhc
Q 012360 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK 277 (465)
Q Consensus 223 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 277 (465)
+++..|-.|+.++|.++-++- .|....-.+.+.|-..|++.+|..+|.+
T Consensus 944 ~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred heeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 445555556666665554432 2333344455566666666666655543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-07 Score=78.06 Aligned_cols=252 Identities=13% Similarity=0.061 Sum_probs=158.4
Q ss_pred cchhhhHHHHHHHccCChHHHHHHhccCC--CCCcccHHH-HHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 012360 17 DIYVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNT-LMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSA 93 (465)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 93 (465)
+..-.+.|..+|-...++..|-..++.+. .|...-|.. -...+.+.+.+..|+++...|... |+...-..-+.+
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqa 119 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQA 119 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHH
Confidence 56677788888889999999999999886 344444432 246778899999999999988652 333222222232
Q ss_pred h--cchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh----CCCCCchhHHHHHHHHHhcCCh
Q 012360 94 C--ARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM----GSRRNIVSLNILINGYIDMELV 167 (465)
Q Consensus 94 ~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~ 167 (465)
. ...+++..+..+.++.-.. .+..+.+.......+.|+++.|.+-|+.. |.. ...+|+.-+ +..+.|+.
T Consensus 120 AIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qy 194 (459)
T KOG4340|consen 120 AIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQY 194 (459)
T ss_pred HHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhH
Confidence 2 3567888888888776432 34455555666677899999999999987 433 344566544 44577899
Q ss_pred HHHHHHHHHhhcC-----------------Ch---------------HHHHHHHHHHHHcCChhHHHHHHHHHHHc-CCC
Q 012360 168 DLAREVFDEIVDK-----------------DI---------------VLWRSMMHGCVKAKQPEEALELFKKMIDE-GVT 214 (465)
Q Consensus 168 ~~a~~~~~~~~~~-----------------~~---------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~ 214 (465)
+.|++...+++++ |+ ..+|.-...+.+.|+++.|.+.+..|.-+ .-.
T Consensus 195 asALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~e 274 (459)
T KOG4340|consen 195 ASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEE 274 (459)
T ss_pred HHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCccccc
Confidence 9999998888443 11 11233333345667777777777666422 123
Q ss_pred CCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 012360 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKT 278 (465)
Q Consensus 215 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 278 (465)
.|+.|...+.-. ...+++.....-+..+.+.+ +....+|..++-.||+..-++.|-.++.+-
T Consensus 275 lDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 275 LDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred CCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 345555433211 22344444444455555543 234567777777777777777777766543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.1e-09 Score=95.15 Aligned_cols=215 Identities=13% Similarity=0.069 Sum_probs=165.9
Q ss_pred hccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHH
Q 012360 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC---KDVVTWTTMIEGLANYGLGNEAL 303 (465)
Q Consensus 227 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 303 (465)
+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+++..+ .|......|...|...|.-..|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356777888888888887765 55677888888888888888888888876553 35667777778888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHH
Q 012360 304 RVFYQMERKGIKPNEATFVSVL-----------AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372 (465)
Q Consensus 304 ~~~~~m~~~g~~p~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 372 (465)
+.++.-+... |.. ..+. ..+.....+....++|-++....+..+|+.+...|.-.|.-.|++++
T Consensus 374 ~~L~~Wi~~~--p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNK--PKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhC--ccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 8887765442 110 0000 12222233445566666665554555788888999999999999999
Q ss_pred HHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 373 AEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 373 A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
|.+.|+.+.. +| |...||.|+..++...+.++|+..|++++++.|.-..+.+.|+..|...|.|++|.+.|=...
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999998654 55 788899999999999999999999999999999999999999999999999999988776543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.8e-08 Score=85.09 Aligned_cols=374 Identities=11% Similarity=0.035 Sum_probs=232.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccc-hhhHHHHHHHHHhCCCh
Q 012360 57 SIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYM-LNMENALLLMYAKCKEM 135 (465)
Q Consensus 57 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 135 (465)
.+.+..|+++.|+.+|.+..... +++...|+.=..+++..|++++|++=-..-++. .|+ ...|.....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 45677899999999999988765 457778888899999999999988766666654 444 45688888999999999
Q ss_pred HHHHHHHHhh-CCCCCc-hhHHHHHHHHHhcCChHHHHHHH------HHhh-cC------ChHHHHHHHHHHHHc-----
Q 012360 136 DEALRLFDEM-GSRRNI-VSLNILINGYIDMELVDLAREVF------DEIV-DK------DIVLWRSMMHGCVKA----- 195 (465)
Q Consensus 136 ~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~------~~~~-~~------~~~~~~~l~~~~~~~----- 195 (465)
++|+..|.+- ...|+. ..++-+..++.... .+.+.| ..+. .| ....|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 9999999886 555543 45666666651110 011111 1110 00 111222222222110
Q ss_pred --CChhHHHHHHHHHHH--------cC-------CCC------------C----------HHHHHHHHHHhccchhhHhH
Q 012360 196 --KQPEEALELFKKMID--------EG-------VTP------------D----------EEVMVSVLSACSSLSNLQYG 236 (465)
Q Consensus 196 --g~~~~a~~~~~~~~~--------~~-------~~~------------~----------~~~~~~ll~~~~~~~~~~~a 236 (465)
.+.+........+.. .| ..| | ..-...+.++..+..+++.+
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 011111111111100 00 111 0 11233455555566677777
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh---h-------hHHHHHHHHHHcCChHHHHHHH
Q 012360 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDV---V-------TWTTMIEGLANYGLGNEALRVF 306 (465)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~-------~~~~l~~~~~~~~~~~~a~~~~ 306 (465)
.+.+....+.. .+..-++....+|...|.+..+...-....+..- . .+..+..+|.+.++++.+...|
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 77777776654 4455556666677777776666555544332111 1 1222334555666777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC
Q 012360 307 YQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI-EHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED 384 (465)
Q Consensus 307 ~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 384 (465)
.+.......|+.. .+....+++....+... -+.|.. .-...-...+.+.|++..|.+.|.++.. +|
T Consensus 322 ~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P 389 (539)
T KOG0548|consen 322 QKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP 389 (539)
T ss_pred HHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Confidence 7755543333321 12233344444433333 122322 1222336678899999999999998754 34
Q ss_pred -ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 385 -KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 385 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
|...|..-.-+|.+.|.+..|+.-.+..++++|+....|..=+.++....+|+.|.+.|++..+.+
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 788899999999999999999999999999999999999999999999999999999999776654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.1e-06 Score=79.01 Aligned_cols=381 Identities=13% Similarity=0.013 Sum_probs=237.0
Q ss_pred HhcCChhHHHHH----HHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCCh
Q 012360 60 NDFSDSGEVLIL----FKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM 135 (465)
Q Consensus 60 ~~~~~~~~a~~~----~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 135 (465)
.-..+.+++.-. +.++....+.-|...|..+.-++...|++..+-+.|++....- .-....|+.+...|...|.-
T Consensus 295 i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~ 373 (799)
T KOG4162|consen 295 IPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSD 373 (799)
T ss_pred cccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccc
Confidence 334455555433 2333334455677788888888888999999999998887643 33455678888888889998
Q ss_pred HHHHHHHHhh-CCC--CCchhHHHHH-HHHH-hcCChHHHHHHHHHhhc--------CChHHHHHHHHHHHHc-------
Q 012360 136 DEALRLFDEM-GSR--RNIVSLNILI-NGYI-DMELVDLAREVFDEIVD--------KDIVLWRSMMHGCVKA------- 195 (465)
Q Consensus 136 ~~A~~~~~~~-~~~--~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~------- 195 (465)
..|..+++.. +.. |+..+--.++ ..|. +.+.++++++.-.+... .....|-.+.-+|...
T Consensus 374 s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~ 453 (799)
T KOG4162|consen 374 SKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLK 453 (799)
T ss_pred hHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCCh
Confidence 8999998776 444 4444433333 3333 45677777766665533 1333444444444321
Q ss_pred ----CChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 012360 196 ----KQPEEALELFKKMIDEG-VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270 (465)
Q Consensus 196 ----g~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (465)
....++++.+++..+.+ -.|+...|..+ -|+-.++.+.|.+..++..+.+-..+...|..+.-.+...+++.+
T Consensus 454 seR~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~ 531 (799)
T KOG4162|consen 454 SERDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE 531 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH
Confidence 23456777788777653 33443333333 356778899999999999988667788888888888888999999
Q ss_pred HHHHHhcCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC---------------------CC-----CC--CHH
Q 012360 271 ALVTFYKTDCK---DVVTWTTMIEGLANYGLGNEALRVFYQMERK---------------------GI-----KP--NEA 319 (465)
Q Consensus 271 a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---------------------g~-----~p--~~~ 319 (465)
|+.+.+..... |......-+..-...++.+++......+... |. .| ...
T Consensus 532 Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s 611 (799)
T KOG4162|consen 532 ALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIS 611 (799)
T ss_pred HHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccch
Confidence 99888754421 1111111122222345555554443333211 10 11 112
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHhhcCCCCCCC--------hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-cc
Q 012360 320 TFVSVLAACRHSG---LITEGCQLFRRMGGVYRVQPT--------IEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KF 386 (465)
Q Consensus 320 ~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~ 386 (465)
++..+..-....+ ..+.. +. ...+.|. ...|......+.+.+..++|...+.+... .| .+
T Consensus 612 ~sr~ls~l~a~~~~~~~se~~------Lp-~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~ 684 (799)
T KOG4162|consen 612 TSRYLSSLVASQLKSAGSELK------LP-SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSA 684 (799)
T ss_pred hhHHHHHHHHhhhhhcccccc------cC-cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhH
Confidence 2222222111111 11111 11 1122222 22445666778888999999877766643 22 55
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHH--HHHHHHHhc
Q 012360 387 ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAE--ARRNMKELQ 450 (465)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~ 450 (465)
..|...+..+...|..++|.+.|..+..++|+++.+...++.++.+.|+..-|.. ++..+.+.+
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 6677777788889999999999999999999999999999999999998777777 777776543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-06 Score=88.41 Aligned_cols=323 Identities=11% Similarity=0.019 Sum_probs=207.1
Q ss_pred HHHhCCChHHHHHHHHhhC---CCCCchhHHHHHHHHHhcCChHHHHHHHHHhhc---C-----C----hHHHHHHHHHH
Q 012360 128 MYAKCKEMDEALRLFDEMG---SRRNIVSLNILINGYIDMELVDLAREVFDEIVD---K-----D----IVLWRSMMHGC 192 (465)
Q Consensus 128 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-----~----~~~~~~l~~~~ 192 (465)
.....|+++.+...++.+. ...+..........+...|+++++...+..... . + ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777776651 111222233444555678899999888876522 1 1 11222233456
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHhccchhhHhHHHHHHHHHHcCC---CC--ChhHHHHHHHHHH
Q 012360 193 VKAKQPEEALELFKKMIDEGVTPDE----EVMVSVLSACSSLSNLQYGRLVHRFILQNNI---TQ--DAFVKTALIDMYS 263 (465)
Q Consensus 193 ~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~ 263 (465)
...|++++|...+++....-...+. .....+...+...|+++.|...+.+...... .+ ...+...+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6889999999999988763111121 2334455566789999999999888765311 11 1234556677888
Q ss_pred hcCCHHHHHHHHhcCCC-------CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHH
Q 012360 264 KCGSLEEALVTFYKTDC-------KD----VVTWTTMIEGLANYGLGNEALRVFYQMERK--GIKPN--EATFVSVLAAC 328 (465)
Q Consensus 264 ~~~~~~~a~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~--~~~~~~l~~~~ 328 (465)
..|+++.|...+++... ++ ...+..+...+...|++++|...+.+.... ...+. ...+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 89999999988765431 11 123445556677789999999998887543 11122 23445566777
Q ss_pred HhcCCHHHHHHHHHHhhcCCC-CCCChh--h-H-HHHHHHHHhcCCHHHHHHHHHhCCCCC--ccc----hHHHHHHHHH
Q 012360 329 RHSGLITEGCQLFRRMGGVYR-VQPTIE--H-F-VCLVDLLSRAGLLYQAEEFIKIMPAED--KFI----SYKALLSACI 397 (465)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~--~-~-~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~----~~~~l~~~~~ 397 (465)
...|+++.|...++.+..... ...... . . ...+..+...|+.+.|..++....... ... .+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 889999999999988753211 111110 0 0 112244556899999999987765421 111 1345677788
Q ss_pred hcCChHHHHHHHHHHHHhC------CCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 398 TYSEFDLGKKVANNMMKLG------NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 398 ~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
..|++++|...++++.+.. +....++..++.++.+.|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8999999999999998753 1223357788899999999999999999887654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.1e-06 Score=77.21 Aligned_cols=193 Identities=10% Similarity=-0.008 Sum_probs=103.6
Q ss_pred HHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----Ch--hhHHHHHHHHH
Q 012360 222 SVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-----DV--VTWTTMIEGLA 294 (465)
Q Consensus 222 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~l~~~~~ 294 (465)
.+...+...|+++.|...+++..+.. +.+...+..+..++...|++++|...+++..+. +. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 34445566666777777777666654 334555666667777777777777777654421 11 23445666777
Q ss_pred HcCChHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH---HHHhhcC-CCCCCChhhHHHHHHHHHh
Q 012360 295 NYGLGNEALRVFYQMERKGI-KPNEATF-V--SVLAACRHSGLITEGCQL---FRRMGGV-YRVQPTIEHFVCLVDLLSR 366 (465)
Q Consensus 295 ~~~~~~~a~~~~~~m~~~g~-~p~~~~~-~--~l~~~~~~~~~~~~a~~~---~~~~~~~-~~~~~~~~~~~~l~~~~~~ 366 (465)
..|++++|..++++...... .+..... + .++..+...|....+.++ ....... .+ ............++..
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAG 276 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhc
Confidence 77888888888877654321 1111111 1 222333334433333222 1111110 01 1111112245666777
Q ss_pred cCCHHHHHHHHHhCCC---C----C----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 367 AGLLYQAEEFIKIMPA---E----D----KFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 367 ~g~~~~A~~~~~~~~~---~----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
.|+.++|..+++.+.. . + .....-....++...|++++|.+.+..++...
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8888888888876643 1 1 11112222334557899999999998887743
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.3e-08 Score=81.52 Aligned_cols=180 Identities=12% Similarity=-0.042 Sum_probs=117.6
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-Ch---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----
Q 012360 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTDC--K-DV---VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA---- 319 (465)
Q Consensus 250 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---- 319 (465)
.....+..+...+...|++++|...|+++.. | +. ..+..+..++...|++++|...++++.+. .|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 3455666677777778888888877776542 2 22 35566677777778888888888887765 33221
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHH
Q 012360 320 TFVSVLAACRHS--------GLITEGCQLFRRMGGVYRVQPT-IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK 390 (465)
Q Consensus 320 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 390 (465)
++..+..++... |++++|.+.++++... .|+ ...+..+..... ..... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHH
Confidence 344445555543 6677777777777743 233 222222211100 00000 00112
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 391 ALLSACITYSEFDLGKKVANNMMKLGNQSH---EAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
.+...+.+.|++++|+..++++++..|+++ ..+..++.++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456678899999999999999999877654 67899999999999999999999887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.3e-08 Score=78.36 Aligned_cols=117 Identities=11% Similarity=0.051 Sum_probs=61.3
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHH-HhcCC--hHHH
Q 012360 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSAC-ITYSE--FDLG 405 (465)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~-~~~~~--~~~a 405 (465)
.++.++++..++...+ .-+.+...|..+...|...|++++|...|++... ..+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 3444455555555443 2234455555555555555555555555555432 22444455555442 34444 3556
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 406 KKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 406 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
.++++++++.+|+++.++..++..+.+.|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666666555555555566666666666666655555444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.8e-06 Score=78.87 Aligned_cols=135 Identities=13% Similarity=0.131 Sum_probs=75.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCH
Q 012360 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLL 370 (465)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 370 (465)
.+....+.+.+|+.+++.+.+. +....-|..+.+.|...|+++.|.++|-+.- .++--|..|.+.|++
T Consensus 740 eaai~akew~kai~ildniqdq--k~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQ--KTASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhh--ccccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccH
Confidence 3344555666666666666554 2223345555666667777777776665543 233445667777777
Q ss_pred HHHHHHHHhCCCC-CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 012360 371 YQAEEFIKIMPAE-DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445 (465)
Q Consensus 371 ~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 445 (465)
+.|.++-.+...+ .....|-+-..-+-++|++.+|+++|- ..+.++ ..+.+|-+.|..++.+++.++
T Consensus 808 ~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyi---ti~~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 808 EDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYI---TIGEPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeE---EccCch-----HHHHHHHhhCcchHHHHHHHH
Confidence 7777766655432 233345444555556666666666553 223111 235566677777776666654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.9e-08 Score=74.57 Aligned_cols=123 Identities=10% Similarity=-0.039 Sum_probs=93.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-
Q 012360 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA- 382 (465)
Q Consensus 304 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 382 (465)
.++++..+. .|+. +..+...+...|++++|...|+.+.. --+.+...+..+..++.+.|++++|...|+....
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 455555554 4443 44567777888888888888888874 2344677888888888888888888888887654
Q ss_pred -CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhh
Q 012360 383 -EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL 432 (465)
Q Consensus 383 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 432 (465)
+.+...+..++.++...|++++|+..|+++++..|+++..+...+.++..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34777888888888888999999999999999888888877777666543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.3e-05 Score=73.79 Aligned_cols=275 Identities=11% Similarity=0.078 Sum_probs=134.6
Q ss_pred CChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 012360 133 KEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEG 212 (465)
Q Consensus 133 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 212 (465)
+..+.|.++-++.. ....|+.+..+-.+.|.+.+|++-|-+.. |+..|..++....+.|.|++-.+.+....+..
T Consensus 1089 ~~ldRA~efAe~~n---~p~vWsqlakAQL~~~~v~dAieSyikad--Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN---EPAVWSQLAKAQLQGGLVKDAIESYIKAD--DPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred hhHHHHHHHHHhhC---ChHHHHHHHHHHHhcCchHHHHHHHHhcC--CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 34444444444332 23345555555555555555554443322 33445555555555555555555554444443
Q ss_pred CCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHH
Q 012360 213 VTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEG 292 (465)
Q Consensus 213 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 292 (465)
-.|... ..++-+|++.++..+-..++ .-|+..-...+..-|...+.++.|.-+|. ++..|..|...
T Consensus 1164 ~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~T 1229 (1666)
T KOG0985|consen 1164 REPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLAST 1229 (1666)
T ss_pred cCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHH
Confidence 333322 23444555555444333222 12444444444455555555555544443 44556667777
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHH
Q 012360 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372 (465)
Q Consensus 293 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 372 (465)
+...|++..|.+.-++. .+..||..+-.+|...+.+.-|. +-.- ++-....-...|++.|...|-+++
T Consensus 1230 LV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL-~iivhadeLeeli~~Yq~rGyFeE 1297 (1666)
T KOG0985|consen 1230 LVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICGL-NIIVHADELEELIEYYQDRGYFEE 1297 (1666)
T ss_pred HHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcCc-eEEEehHhHHHHHHHHHhcCcHHH
Confidence 77777777766654432 24456666666666655443331 1100 112234445567777777777777
Q ss_pred HHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHH-hC-C------CCchhHHHHHHHHhhcCChHHH
Q 012360 373 AEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMK-LG-N------QSHEAYVLLSNFYALEGHWTEV 439 (465)
Q Consensus 373 A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-p------~~~~~~~~l~~~~~~~g~~~~a 439 (465)
-+.+++.... ......|..|.-.|.+- ++++..+.++-... .+ | +....|..+...|.+-..|+.|
T Consensus 1298 lIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1298 LISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 7777776543 22344455555555443 34444444333322 11 1 1223455555555555555554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.1e-09 Score=59.02 Aligned_cols=34 Identities=29% Similarity=0.392 Sum_probs=31.2
Q ss_pred hccCCcchhhhHHHHHHHccCChHHHHHHhccCC
Q 012360 12 TALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP 45 (465)
Q Consensus 12 ~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 45 (465)
+|++||..+||+||+.|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4889999999999999999999999999999884
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=6e-06 Score=85.39 Aligned_cols=321 Identities=10% Similarity=-0.058 Sum_probs=201.6
Q ss_pred hhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh----CC-C----CCch--hHHHHHHHHHhcC
Q 012360 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM----GS-R----RNIV--SLNILINGYIDME 165 (465)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~-~----~~~~--~~~~l~~~~~~~~ 165 (465)
.|+...+..++..+.......+..........+...|++++|...+... .. . +... ....+...+...|
T Consensus 387 ~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 466 (903)
T PRK04841 387 QGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDG 466 (903)
T ss_pred cCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCC
Confidence 4555555555444311111112223344455667789999999988876 11 1 1111 1222334556789
Q ss_pred ChHHHHHHHHHhhc--C--Ch----HHHHHHHHHHHHcCChhHHHHHHHHHHHcCC---CCC--HHHHHHHHHHhccchh
Q 012360 166 LVDLAREVFDEIVD--K--DI----VLWRSMMHGCVKAKQPEEALELFKKMIDEGV---TPD--EEVMVSVLSACSSLSN 232 (465)
Q Consensus 166 ~~~~a~~~~~~~~~--~--~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~~~~~~ll~~~~~~~~ 232 (465)
++++|...++.... + +. ...+.+...+...|++++|...+++...... .+. ..++..+...+...|+
T Consensus 467 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~ 546 (903)
T PRK04841 467 DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF 546 (903)
T ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC
Confidence 99999999987643 2 21 2445566677889999999999988775311 111 2344455666788999
Q ss_pred hHhHHHHHHHHHHc----CCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC------C--ChhhHHHHHHHHHHcC
Q 012360 233 LQYGRLVHRFILQN----NIT--Q-DAFVKTALIDMYSKCGSLEEALVTFYKTDC------K--DVVTWTTMIEGLANYG 297 (465)
Q Consensus 233 ~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~--~~~~~~~l~~~~~~~~ 297 (465)
++.|...+++.... +.. + ....+..+...+...|++++|...+++... + ....+..+...+...|
T Consensus 547 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G 626 (903)
T PRK04841 547 LQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARG 626 (903)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcC
Confidence 99999998876653 211 1 223345566677788999999988876532 1 1234445666788899
Q ss_pred ChHHHHHHHHHHHHCC--CCCCHH--H-H-HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC---hhhHHHHHHHHHhcC
Q 012360 298 LGNEALRVFYQMERKG--IKPNEA--T-F-VSVLAACRHSGLITEGCQLFRRMGGVYRVQPT---IEHFVCLVDLLSRAG 368 (465)
Q Consensus 298 ~~~~a~~~~~~m~~~g--~~p~~~--~-~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 368 (465)
+++.|...+.+..... ...... . . ...+..+...|+.+.|..++...... ..... ...+..+..++...|
T Consensus 627 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 627 DLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcC
Confidence 9999999988875421 111110 1 1 11223445578999999998876642 11111 111346777888999
Q ss_pred CHHHHHHHHHhCCC----CC----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 012360 369 LLYQAEEFIKIMPA----ED----KFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418 (465)
Q Consensus 369 ~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 418 (465)
++++|...+++... .+ ...+...+..++...|+.++|...+.++++....
T Consensus 706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 99999999887643 11 1235566777888999999999999999997743
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.2e-05 Score=74.04 Aligned_cols=308 Identities=14% Similarity=0.101 Sum_probs=171.9
Q ss_pred CcchhhhHHHHHHHccCChHHHHHHhccCCC-----------CCc-ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 012360 16 SDIYVGNSLIHFYGRMALFTDARVLFDKMPF-----------RDV-GSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVAD 83 (465)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 83 (465)
.+..+|..+...+.+..+.+-|.-.+-.|.. .|. ..--.........|..++|..+|++.++.
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~----- 829 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY----- 829 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 4566889999999998888888877776651 111 22222333345779999999999988763
Q ss_pred hhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCC----------------
Q 012360 84 KITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGS---------------- 147 (465)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------------- 147 (465)
..+=..|-..|.+++|.++-+.-.+..+ ..+|.....-+-..+|.+.|++.|++.+.
T Consensus 830 ----DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 830 ----DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ----HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 3344556677888888887654333221 23455556666677888888888887621
Q ss_pred ------CCCchhHHHHHHHHHhcCChHHHHHHHHHhhc------------------------CChHHHHHHHHHHHHcCC
Q 012360 148 ------RRNIVSLNILINGYIDMELVDLAREVFDEIVD------------------------KDIVLWRSMMHGCVKAKQ 197 (465)
Q Consensus 148 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------------~~~~~~~~l~~~~~~~g~ 197 (465)
..|...|.-....+-..|+.+.|+.+|..... .|......+.+.|-..|+
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~ 982 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGD 982 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHH
Confidence 12333444444555567888888887766522 144445556666666777
Q ss_pred hhHHHHHHHHHHHcC--C------CCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 012360 198 PEEALELFKKMIDEG--V------TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269 (465)
Q Consensus 198 ~~~a~~~~~~~~~~~--~------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (465)
+.+|..+|.+..... + ..+...++.. ..+...+.-.|..+|++.- . -+..-+..|-+.|.+.
T Consensus 983 v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nla--l~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~ 1052 (1416)
T KOG3617|consen 983 VVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLA--LMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMIG 1052 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH--hhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchH
Confidence 777777666543210 0 0001111110 1122223333444444321 0 1122345566777777
Q ss_pred HHHHHHhcCCC--------------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----------C------------
Q 012360 270 EALVTFYKTDC--------------KDVVTWTTMIEGLANYGLGNEALRVFYQMERK----------G------------ 313 (465)
Q Consensus 270 ~a~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----------g------------ 313 (465)
+|+++--+-.+ .|+...+.-...++.+.++++|..++-..++. |
T Consensus 1053 kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mT 1132 (1416)
T KOG3617|consen 1053 KALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMT 1132 (1416)
T ss_pred HHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcC
Confidence 77655422211 24555555555666666666666554433211 1
Q ss_pred ----CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 314 ----IKPNEA----TFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 314 ----~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
-.|+.. ....+...|.++|.+..|-+-|.++-
T Consensus 1133 p~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1133 PTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred cCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 122222 34555566777777777766665553
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.9e-05 Score=74.10 Aligned_cols=343 Identities=11% Similarity=0.081 Sum_probs=239.9
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--chhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHH
Q 012360 48 DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVA--DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENAL 125 (465)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 125 (465)
|+..-+..+.++...+-+.+-++++++..-.+-.. +...-+.++-...+ -+...+.+..+++...+ .| .+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~------~i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-AP------DI 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-ch------hH
Confidence 55556667777778888888888888776422111 11122333332222 23344445554444322 11 23
Q ss_pred HHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHH
Q 012360 126 LLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELF 205 (465)
Q Consensus 126 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 205 (465)
.......+-+++|..+|++. ..+..+.+.|+. .-++++.|.+.-++..+| ..|..+..+-.+.|...+|++-|
T Consensus 1055 a~iai~~~LyEEAF~ifkkf--~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF--DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh--cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHH
Confidence 44455667788888888887 334444444443 346777787777776654 57889999999999999999877
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhh
Q 012360 206 KKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVT 285 (465)
Q Consensus 206 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 285 (465)
-+. -|...|..++..+.+.|.+++-..++....+....|.. -+.++-+|++.+++.+..+++. .||...
T Consensus 1128 ika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~---gpN~A~ 1196 (1666)
T KOG0985|consen 1128 IKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA---GPNVAN 1196 (1666)
T ss_pred Hhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc---CCCchh
Confidence 443 25668999999999999999999999988887656544 4578999999999988877754 477777
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHH
Q 012360 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365 (465)
Q Consensus 286 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 365 (465)
...+..-|...+.++.|.-+|.. ..-|..|...+...|++..|...-+++ .+..+|..+-.+|.
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACV 1260 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHh
Confidence 88888889999999988877763 345777888888889998887765554 34678888888888
Q ss_pred hcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC
Q 012360 366 RAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434 (465)
Q Consensus 366 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 434 (465)
..+.+.-|.-.=-.+. -...-...++..|...|-+++-+.+++..+.+...+...|..|+..|++-.
T Consensus 1261 d~~EFrlAQiCGL~ii--vhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk 1327 (1666)
T KOG0985|consen 1261 DKEEFRLAQICGLNII--VHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK 1327 (1666)
T ss_pred chhhhhHHHhcCceEE--EehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC
Confidence 8776655432100000 123346778889999999999999999988888777788888888887653
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.7e-07 Score=90.17 Aligned_cols=199 Identities=11% Similarity=0.103 Sum_probs=104.3
Q ss_pred HHHHHHHHHHhccchhhHhHHHHHHHHHHc-CCCCC---hhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-C-hhhHHHHH
Q 012360 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQD---AFVKTALIDMYSKCGSLEEALVTFYKTDCK-D-VVTWTTMI 290 (465)
Q Consensus 217 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~l~ 290 (465)
...|...|......++.++|.++.++++.. ++.-. ..+|.+++..-..-|.-+...++|+++.+- | ...|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 344555555555666666666666665542 11111 224444555444455555555666555432 2 23455556
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCH
Q 012360 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLL 370 (465)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 370 (465)
..|.+.+.+++|.++++.|.++ +......|...+..+.+..+-+.|..++.++.+...-..........+..-.+.|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 6666666666666666666554 223445555556666666666666666666553210011233334444455556666
Q ss_pred HHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 371 YQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 371 ~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
+++..+|+.... .| ....|+.++..-.++|+.+.+..+|++++.++
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 666666655433 22 44556666666666666666666666666654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.9e-08 Score=74.56 Aligned_cols=108 Identities=11% Similarity=0.026 Sum_probs=92.5
Q ss_pred HHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 012360 338 CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKL 415 (465)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 415 (465)
..++++..+ ..|+. +..+...+...|++++|...|+.... +.+...|..+..++...|++++|+..|+++++.
T Consensus 13 ~~~~~~al~---~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLS---VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHH---cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 355666663 34543 55678889999999999999998754 347788999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 416 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
+|.++..+..++.++.+.|++++|...+++..+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999886654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.3e-06 Score=67.26 Aligned_cols=251 Identities=11% Similarity=0.054 Sum_probs=158.5
Q ss_pred HHHhcCChHHHHHHHHHh-hc-CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhH-
Q 012360 160 GYIDMELVDLAREVFDEI-VD-KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYG- 236 (465)
Q Consensus 160 ~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a- 236 (465)
-+.-.|++..++..-... .. .+...-..+.++|...|++.....-. .. |-.|....+..+.......++.+.-
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI---~~-~~~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEI---KE-GKATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccc---cc-ccCChHHHHHHHHHHhhCcchhHHHH
Confidence 334445555554433332 11 23333344556677676655443322 11 1233444444444444444444333
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 012360 237 RLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP 316 (465)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 316 (465)
..+.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+.+-|...+++|.+- .
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---d 167 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---D 167 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---c
Confidence 3444555555444444444555667888899999998888733 3333333345566777889999999999864 3
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCC--CccchHH
Q 012360 317 NEATFVSVLAACRH----SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE--DKFISYK 390 (465)
Q Consensus 317 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 390 (465)
+..|.+.|..++.+ .+....|.-+|+++.+ ..+|+..+.+-...++...|++++|..++++...+ .++.+..
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~ 245 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLA 245 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence 56788878877764 4568899999999986 56888889998899999999999999999887653 3677777
Q ss_pred HHHHHHHhcCCh-HHHHHHHHHHHHhCCCCch
Q 012360 391 ALLSACITYSEF-DLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 391 ~l~~~~~~~~~~-~~a~~~~~~~~~~~p~~~~ 421 (465)
.++.+-...|.. +-..+.+.+.....|..+.
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 777666666655 4455677777777787764
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.7e-07 Score=86.57 Aligned_cols=193 Identities=13% Similarity=0.083 Sum_probs=111.4
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012360 249 TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328 (465)
Q Consensus 249 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 328 (465)
+|-...-..+...+.+.|-...|..+|++. ..|.-.+.+|...|+..+|..+..+..++ +|++..|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 444445566777777778888888777653 35666777777777777777777776664 66777777666665
Q ss_pred HhcCCHHHHHHHHHHhhcCC--------------------------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012360 329 RHSGLITEGCQLFRRMGGVY--------------------------RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (465)
....-+++|.++.+....+- -.+....+|..+..+..+.++++.|.+.|..-..
T Consensus 468 ~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred cChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 55444555555554433210 1112334444455555555555555555544322
Q ss_pred -C-CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 383 -E-DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 383 -~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
. .+...||++-.+|.+.++-.+|...++++.+.+-.+..+|.+........|.+++|.+.++++.+
T Consensus 548 L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 548 LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 2 24445555555555555555555555555555555555555555555555555555555555543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.4e-06 Score=73.45 Aligned_cols=145 Identities=10% Similarity=-0.051 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhc---CCH----HH
Q 012360 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA---GLL----YQ 372 (465)
Q Consensus 300 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~ 372 (465)
+++..+++++.+.. +-|..+|.....++...|+++++++.++++.+. -+.+...|+.....+.+. |.. ++
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHH
Confidence 45666666666552 224566666666666777777777777777753 233445555554444443 222 34
Q ss_pred HHHHHHh-CCCCC-ccchHHHHHHHHHhc----CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC------------
Q 012360 373 AEEFIKI-MPAED-KFISYKALLSACITY----SEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG------------ 434 (465)
Q Consensus 373 A~~~~~~-~~~~~-~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------ 434 (465)
+.+...+ +...| +...|+.+...+... +...+|.+.+.+..+.+|.++.++..|++.|....
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 5555533 33344 677788877777663 44567888888888888888888899999888642
Q ss_pred ------ChHHHHHHHHHHH
Q 012360 435 ------HWTEVAEARRNMK 447 (465)
Q Consensus 435 ------~~~~a~~~~~~~~ 447 (465)
..++|.++++.+.
T Consensus 282 ~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 282 LAEELSDSTLAQAVCSELE 300 (320)
T ss_pred cccccccHHHHHHHHHHHH
Confidence 2366888888773
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-05 Score=77.85 Aligned_cols=419 Identities=13% Similarity=0.044 Sum_probs=250.6
Q ss_pred hhhhHHHHHHHccCChHHHHHHhccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCchhhHHHHHHHh
Q 012360 19 YVGNSLIHFYGRMALFTDARVLFDKMPF---RDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEG-IVADKITLVILFSAC 94 (465)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~ 94 (465)
..|..|-+.|+...+...|.+.|+..-+ .+..++..+.+.|++..+++.|..+.-..-+.. ...-...|....-.+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 4788888888888888899999987663 466788889999999999999998843332221 011112233344456
Q ss_pred cchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCCchhHHHH--HHHHHhcCChHHHH
Q 012360 95 ARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRRNIVSLNIL--INGYIDMELVDLAR 171 (465)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l--~~~~~~~~~~~~a~ 171 (465)
...++...+..-|+...+.. +.|...|..++.+|.+.|++..|.++|.+. ..+|+. +|... ....+..|.+.+|.
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s-~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS-KYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh-HHHHHHHHHHHHHhhhHHHHH
Confidence 67888888888888888765 567788999999999999999999999888 344433 33332 34456788999999
Q ss_pred HHHHHhhcC----------ChHHHHHHHHHHHHcCChhHHHHHHHHHH-------HcCCCCCHHHHHHHHHHh-------
Q 012360 172 EVFDEIVDK----------DIVLWRSMMHGCVKAKQPEEALELFKKMI-------DEGVTPDEEVMVSVLSAC------- 227 (465)
Q Consensus 172 ~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~~~~~ll~~~------- 227 (465)
..+..+... -..++-.+...+...|-...|..++++-+ ......+...+..+-.+|
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e 730 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE 730 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence 888877332 11122222222333333333333333322 111111111121111111
Q ss_pred ----------------ccchhh---H---hHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cC----CHHHHHHHHhc
Q 012360 228 ----------------SSLSNL---Q---YGRLVHRFILQNNITQDAFVKTALIDMYSK----CG----SLEEALVTFYK 277 (465)
Q Consensus 228 ----------------~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~----~~~~a~~~~~~ 277 (465)
.+.+.. + .+.+.+-.-. ....+..+|..++..|.+ .+ +...|+..+.+
T Consensus 731 ~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kk 808 (1238)
T KOG1127|consen 731 PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKK 808 (1238)
T ss_pred ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHH
Confidence 111111 1 0000000000 111123334344433333 11 22355666655
Q ss_pred CC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-
Q 012360 278 TD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP- 352 (465)
Q Consensus 278 ~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~- 352 (465)
.. ..+...|+.|.-. ...|++.-|...|-+-... .| +..+|..+.-.+.+..+++.|...|...+. +.|
T Consensus 809 aV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s--ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS---LdP~ 882 (1238)
T KOG1127|consen 809 AVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS--EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS---LDPL 882 (1238)
T ss_pred HHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--cccchhheeccceeEEecccHHHhhHHHHhhhh---cCch
Confidence 43 2456677777665 5567777777777665554 34 456777777778888999999999998873 344
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHh---C--CC--CCccchHHHHHHHHHhcCChHHHHH----------HHHHHHHh
Q 012360 353 TIEHFVCLVDLLSRAGLLYQAEEFIKI---M--PA--EDKFISYKALLSACITYSEFDLGKK----------VANNMMKL 415 (465)
Q Consensus 353 ~~~~~~~l~~~~~~~g~~~~A~~~~~~---~--~~--~~~~~~~~~l~~~~~~~~~~~~a~~----------~~~~~~~~ 415 (465)
+...|..........|+.-++..+|.. . .. -++...|..........|++++-+. .+++....
T Consensus 883 nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~ 962 (1238)
T KOG1127|consen 883 NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLG 962 (1238)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhc
Confidence 555565555555667888888887764 1 11 1233344443334445665554443 44445556
Q ss_pred CCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 416 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
.|+...+|...+....+.+.+.+|.+...+..
T Consensus 963 ~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 963 HPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999888777653
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4e-06 Score=80.49 Aligned_cols=374 Identities=12% Similarity=0.017 Sum_probs=219.0
Q ss_pred ChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHH
Q 012360 64 DSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFD 143 (465)
Q Consensus 64 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 143 (465)
+...|+..|-+..+... -=...|..+...|....+...|.+.|....+.+ ..+........+.|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 36666666666555321 122468888888888888889999998887764 4566677888999999999999999854
Q ss_pred hhCCC-C---CchhHHHHHHHHHhcCChHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 012360 144 EMGSR-R---NIVSLNILINGYIDMELVDLAREVFDEIVD---KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD 216 (465)
Q Consensus 144 ~~~~~-~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 216 (465)
..+.. | -...|....-.|.+.++...|...|+...+ .|...|..++.+|...|++..|.++|.+... ++|+
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~ 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH
Confidence 44211 1 112344445566788899999999988754 3667888899999999999999999998877 4555
Q ss_pred HHHHHHHH--HHhccchhhHhHHHHHHHHHHc------CCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--------
Q 012360 217 EEVMVSVL--SACSSLSNLQYGRLVHRFILQN------NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC-------- 280 (465)
Q Consensus 217 ~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------- 280 (465)
.. |...- ..-+..|.+.++...+..+... +...-..++..+...+...|-..+|..++++..+
T Consensus 629 s~-y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 629 SK-YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred hH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 33 32222 2246788888888888876543 1111223333333334444444444444443221
Q ss_pred ---CChhhHHHHHHHHHH---cC--ChH-HHHHHH-HHHHHCCCCC--------------------CHHHHHHHHHHHHh
Q 012360 281 ---KDVVTWTTMIEGLAN---YG--LGN-EALRVF-YQMERKGIKP--------------------NEATFVSVLAACRH 330 (465)
Q Consensus 281 ---~~~~~~~~l~~~~~~---~~--~~~-~a~~~~-~~m~~~g~~p--------------------~~~~~~~l~~~~~~ 330 (465)
.+...|-.+..+|.- .. -+. ....++ .+....+.-| +..+|..++..|.+
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr 787 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLR 787 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHH
Confidence 122233332222211 00 000 001111 1122222221 22233333333322
Q ss_pred ----c----CCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC--CCCccchHHHHHHHHHhcC
Q 012360 331 ----S----GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP--AEDKFISYKALLSACITYS 400 (465)
Q Consensus 331 ----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 400 (465)
. .+...|+..+.+..+ -...+..+|+.|.-+ ...|.+.-|..-|-+-. .+....+|..+...+.+..
T Consensus 788 ~f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 788 YFLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecc
Confidence 1 122345566665553 123344455555433 44456655555443322 2335666777777777778
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 012360 401 EFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445 (465)
Q Consensus 401 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 445 (465)
+++-|...+.+.+.+.|.+...|...+......|+.-++..+|..
T Consensus 865 d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred cHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 888888888888888888877777777777777777777776664
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.8e-06 Score=70.33 Aligned_cols=155 Identities=11% Similarity=0.065 Sum_probs=106.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHh
Q 012360 287 TTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR 366 (465)
Q Consensus 287 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 366 (465)
..+-..+...|+-+....+....... ..-|......++....+.|++..|...+.++.. .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44445566666666666666554332 122334445566777777777777777777774 456677777777777777
Q ss_pred cCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHH
Q 012360 367 AGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARR 444 (465)
Q Consensus 367 ~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 444 (465)
.|+++.|..-|.+..+ ..++...+.+...+.-.|+.+.|..++.......+.+..+-..|..+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 8888777777766543 23566677777777777888888888877777777777777777777777888777776554
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.2e-07 Score=80.11 Aligned_cols=247 Identities=13% Similarity=0.031 Sum_probs=172.6
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 012360 191 GCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270 (465)
Q Consensus 191 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (465)
-+.+.|++.+|.-.|+..++... -+...|..|-......++-..|+..+++..+.. +.+......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 35677778888777877776532 256677777767777777777777777777764 4456677777777887777777
Q ss_pred HHHHHhcCCCCC-hhhHHHHH---------HHHHHcCChHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012360 271 ALVTFYKTDCKD-VVTWTTMI---------EGLANYGLGNEALRVFYQM-ERKGIKPNEATFVSVLAACRHSGLITEGCQ 339 (465)
Q Consensus 271 a~~~~~~~~~~~-~~~~~~l~---------~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 339 (465)
|+..|++-.... ...|.... ..+..........++|-++ ...+..+|+.....|.-.|.-.|++++|..
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 877776532100 00000000 1111122233444555444 445545788888888888999999999999
Q ss_pred HHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 340 LFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 340 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
.|+.+.. +.| |..+||.|.-.+....+..+|+..|++... +| -+.++..|.-+|+..|.+++|.+.|-.++.+.
T Consensus 452 cf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 452 CFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 9999995 345 688999999999999999999999998765 45 56777888999999999999999999998854
Q ss_pred CC-----C-----chhHHHHHHHHhhcCChHHHHHH
Q 012360 417 NQ-----S-----HEAYVLLSNFYALEGHWTEVAEA 442 (465)
Q Consensus 417 p~-----~-----~~~~~~l~~~~~~~g~~~~a~~~ 442 (465)
+. . ..+|..|=.++.-.++.+-+..+
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 33 1 24677777777777777754443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-06 Score=71.20 Aligned_cols=152 Identities=12% Similarity=0.112 Sum_probs=114.3
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 012360 259 IDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGC 338 (465)
Q Consensus 259 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 338 (465)
+-.|...|+++.+....+....+. ..+...++.+++...+++..+.. +.+...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 445667777766654443322221 01122566778888888877662 446788999999999999999999
Q ss_pred HHHHHhhcCCCCCCChhhHHHHHHHH-HhcCC--HHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHH
Q 012360 339 QLFRRMGGVYRVQPTIEHFVCLVDLL-SRAGL--LYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMM 413 (465)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 413 (465)
..|+++.+. .+.+...+..+..++ ...|+ .++|.+++++... .| +...+..+...+...|++++|+..|++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999853 244677888888864 67777 5999999998765 34 77889999999999999999999999999
Q ss_pred HhCCCCch
Q 012360 414 KLGNQSHE 421 (465)
Q Consensus 414 ~~~p~~~~ 421 (465)
+..|++..
T Consensus 172 ~l~~~~~~ 179 (198)
T PRK10370 172 DLNSPRVN 179 (198)
T ss_pred hhCCCCcc
Confidence 99977666
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.00017 Score=65.11 Aligned_cols=147 Identities=5% Similarity=0.039 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHH
Q 012360 299 GNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFI 377 (465)
Q Consensus 299 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 377 (465)
.+.....++++...-..--..+|..+++.-.+..-.+.|..+|.++.+. +..+ .+.+.+++++-|+ .++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 3444444544443321112234555555555666666666666666654 3333 4555555555443 35566666666
Q ss_pred Hh-CCCCCccch-HHHHHHHHHhcCChHHHHHHHHHHHHhC--C-CCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 378 KI-MPAEDKFIS-YKALLSACITYSEFDLGKKVANNMMKLG--N-QSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 378 ~~-~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
+- +..-+|... -...+..+...++-..+..+|++.+... | ....+|..++.--+.-|+.+.+.++-+++.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 54 222233332 2444555556666666666666666652 1 122356666666666666666666655443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.5e-06 Score=70.82 Aligned_cols=134 Identities=11% Similarity=0.073 Sum_probs=114.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHH
Q 012360 315 KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKAL 392 (465)
Q Consensus 315 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l 392 (465)
.|+......+-..+...|+-+....+...... ..+.+......++....+.|++..|...+++... ++|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 55433335666778888998888888888764 3345666777799999999999999999998754 5689999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 393 LSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
.-+|.+.|++++|..-|.++.++.|.++.+++.++..+.-.|+++.|..++......+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999998776543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.5e-05 Score=72.86 Aligned_cols=226 Identities=10% Similarity=0.079 Sum_probs=173.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchh
Q 012360 153 SLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN 232 (465)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 232 (465)
.-..+...+...|-...|..+|+++. .|..++.+|...|+..+|..+..+..+ -+||...|..+........-
T Consensus 400 ~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHH
Confidence 34567778888999999999998764 577788899999999999999888877 47888889888888888888
Q ss_pred hHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 012360 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC---KDVVTWTTMIEGLANYGLGNEALRVFYQM 309 (465)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 309 (465)
+++|.++.+..... .-..+.....+.++++++.+.|+.-.+ -...+|-.+..+..+.+++..|.+.|..-
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 88888888765432 222233334457899999999986443 34568888888888999999999999988
Q ss_pred HHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CC
Q 012360 310 ERKGIKPNE-ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA----ED 384 (465)
Q Consensus 310 ~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~ 384 (465)
... .|+. ..|+.+-.+|.+.++..+|...++++.+. + ..+...|...+-.....|.+++|.+.+.++.. ..
T Consensus 546 vtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 546 VTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred hhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 866 6764 68999999999999999999999999864 4 44556777777788899999999999887644 12
Q ss_pred ccchHHHHHHHH
Q 012360 385 KFISYKALLSAC 396 (465)
Q Consensus 385 ~~~~~~~l~~~~ 396 (465)
|..+...++...
T Consensus 622 d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 622 DDEVLLIIVRTV 633 (777)
T ss_pred cchhhHHHHHHH
Confidence 444444444443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-06 Score=82.93 Aligned_cols=131 Identities=11% Similarity=0.064 Sum_probs=76.1
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHH
Q 012360 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE-ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360 (465)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 360 (465)
++..+..|.....+.|++++|..+++...+. .|+. .....+..++.+.+++++|...+++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 3455555666666666666666666666655 4543 3445555666666666666666666664 223344445555
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 361 VDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
..++.+.|++++|..+|+++.. .| +..++..+..++.+.|+.++|...|+++++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 5666666666666666666543 22 34556666666666666666666666666654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.3e-08 Score=54.31 Aligned_cols=32 Identities=25% Similarity=0.556 Sum_probs=18.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 012360 313 GIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344 (465)
Q Consensus 313 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 344 (465)
|+.||..||+.+|++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-05 Score=80.11 Aligned_cols=200 Identities=12% Similarity=0.072 Sum_probs=113.6
Q ss_pred cchhhHHHHHHHHHhCCChHHHHHHHHhh--CCCC-----CchhHHHHHHHHHhcCChHHHHHHHHHhhcC-C-hHHHHH
Q 012360 117 YMLNMENALLLMYAKCKEMDEALRLFDEM--GSRR-----NIVSLNILINGYIDMELVDLAREVFDEIVDK-D-IVLWRS 187 (465)
Q Consensus 117 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~ 187 (465)
.+...|-..|......++.++|.++.++. .+.+ -...|.++++.-...|.-+...++|++..+- | ...|..
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~ 1535 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLK 1535 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHH
Confidence 33445666666666677777777776666 2211 1224555555555556566666666666442 2 245666
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcC
Q 012360 188 MMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT-QDAFVKTALIDMYSKCG 266 (465)
Q Consensus 188 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 266 (465)
|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.+.++.-.. -......-.+..-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 666666666666666666666654 2234455666666666666666666666666553211 12333444445555666
Q ss_pred CHHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 012360 267 SLEEALVTFYKTDC---KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317 (465)
Q Consensus 267 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 317 (465)
+.+.+..+|+.... .-...|+..+..-.++|+.+.+..+|++....++.|-
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 66666666665442 2344566666666666666666666666666655553
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.8e-05 Score=69.22 Aligned_cols=138 Identities=12% Similarity=0.050 Sum_probs=95.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHhc
Q 012360 290 IEGLANYGLGNEALRVFYQMERKGIKPNEA-TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT-IEHFVCLVDLLSRA 367 (465)
Q Consensus 290 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 367 (465)
...+...|++++|+..++.+.+. .|+.. ........+.+.++.++|.+.++++... .|+ ....-.+.++|.+.
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhc
Confidence 33455667888888888888776 56544 4444557788888888888888888743 454 55556777888888
Q ss_pred CCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 012360 368 GLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445 (465)
Q Consensus 368 g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 445 (465)
|++.+|..+++.... +.|+..|..|..+|...|+..++..... ..|...|++++|...+..
T Consensus 388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQAIIFLMR 450 (484)
T ss_pred CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHHHHHHHHH
Confidence 888888888876543 3377788888888888888777765444 345555666666666655
Q ss_pred HHHh
Q 012360 446 MKEL 449 (465)
Q Consensus 446 ~~~~ 449 (465)
.++.
T Consensus 451 A~~~ 454 (484)
T COG4783 451 ASQQ 454 (484)
T ss_pred HHHh
Confidence 5443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-06 Score=74.81 Aligned_cols=181 Identities=12% Similarity=-0.008 Sum_probs=124.5
Q ss_pred CHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCC-C-ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-Chh---hHH
Q 012360 216 DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT-Q-DAFVKTALIDMYSKCGSLEEALVTFYKTDC--K-DVV---TWT 287 (465)
Q Consensus 216 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~---~~~ 287 (465)
....+..+...+...|+++.|...++++...... | ....+..+..++...|++++|...++++.+ | +.. .+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4556777778889999999999999999876421 1 124667888999999999999999998763 3 222 455
Q ss_pred HHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHH
Q 012360 288 TMIEGLANY--------GLGNEALRVFYQMERKGIKPNEA-TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV 358 (465)
Q Consensus 288 ~l~~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 358 (465)
.+..++... |++++|.+.++++.+. .|+.. ....+..... ... .. .....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~-------~~--------~~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN-------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH-------HH--------HHHHH
Confidence 555666554 7789999999999877 56542 2222211110 000 00 01112
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC-CC----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 012360 359 CLVDLLSRAGLLYQAEEFIKIMPA-ED----KFISYKALLSACITYSEFDLGKKVANNMMKLGN 417 (465)
Q Consensus 359 ~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 417 (465)
.+...+.+.|++++|...++.... .| ....+..++.++...|++++|..+++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456678888999999888887643 22 235678888888899999999988888776655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.7e-06 Score=67.11 Aligned_cols=244 Identities=10% Similarity=0.026 Sum_probs=158.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 012360 189 MHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268 (465)
Q Consensus 189 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 268 (465)
++-+.-.|.+..++..-....... -+...-.-+-++|...|.+.... .++.... .|....+..+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchh
Confidence 344555677777777665544321 23334444555666666554332 2222222 33344444444444444444
Q ss_pred HHHHHHH-hcCCCC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012360 269 EEALVTF-YKTDCK----DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRR 343 (465)
Q Consensus 269 ~~a~~~~-~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 343 (465)
+.-..-+ +.+..+ +......-...|+..+++++|++...... +......=+..+.+..+.+-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333322 233322 22222333456889999999999887621 333333445667788899999999999
Q ss_pred hhcCCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 012360 344 MGGVYRVQPTIEHFVCLVDLLSR----AGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417 (465)
Q Consensus 344 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 417 (465)
|.+- .+..+.+.|..++.+ .+...+|.-+|+++.. .|.+.+.+....++...|++++|..+++.++...+
T Consensus 163 mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 9852 445566666666654 5678999999999976 56888888899999999999999999999999999
Q ss_pred CCchhHHHHHHHHhhcCChHHHH-HHHHHHHH
Q 012360 418 QSHEAYVLLSNFYALEGHWTEVA-EARRNMKE 448 (465)
Q Consensus 418 ~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~ 448 (465)
.++.+...++.+-...|+-.++. +.+.+++.
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999999998888899876643 45555543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.6e-06 Score=79.40 Aligned_cols=129 Identities=10% Similarity=0.090 Sum_probs=80.0
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 012360 249 TQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--K-DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE-ATFVSV 324 (465)
Q Consensus 249 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l 324 (465)
+.+...+..|.......|.+++|..+++...+ | +......+...+.+.+++++|....++.... .|+. .....+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 44466666666666677777777777666542 3 3445555666666677777777777666665 4443 445555
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012360 325 LAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (465)
..++.+.|++++|..+|+++... .+-+...+..+..++...|+.++|...|++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56666667777777777776642 22335566666666667777777777666654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.6e-07 Score=68.81 Aligned_cols=99 Identities=12% Similarity=0.075 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHh
Q 012360 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACIT 398 (465)
Q Consensus 321 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~ 398 (465)
...+...+...|++++|...++.+... .+.+...+..+...+...|++++|...++.... +.+...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 334444455555555555555555431 123444445555555555555555555544322 1233444445555555
Q ss_pred cCChHHHHHHHHHHHHhCCCCch
Q 012360 399 YSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 399 ~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.|++++|...++++++..|++..
T Consensus 98 ~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 98 LGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred cCCHHHHHHHHHHHHHhccccch
Confidence 55555555555555555554443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.8e-05 Score=77.78 Aligned_cols=166 Identities=11% Similarity=0.078 Sum_probs=75.9
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCCchh-HHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 012360 119 LNMENALLLMYAKCKEMDEALRLFDEM-GSRRNIVS-LNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAK 196 (465)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g 196 (465)
...+..|+..+...+++++|.++.+.. ...|+... |..+...+.+.++.+.+.-+ .++..+....
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~ 97 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNL 97 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccccc
Confidence 445556666666666666666666544 33333322 22222233344443322211 2233333333
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 012360 197 QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276 (465)
Q Consensus 197 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 276 (465)
++.-+..+...+.+. .-+...+..+..+|-+.|+.+++..+++++++.. +-++.+.|.+...|... ++++|.+++.
T Consensus 98 ~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 98 KWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred chhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 343333333333332 1223344455555555555555555555555554 34455555555555555 5555555443
Q ss_pred cCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012360 277 KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK 312 (465)
Q Consensus 277 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 312 (465)
+. +..+...+++..+.++|.++...
T Consensus 174 KA-----------V~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 174 KA-----------IYRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HH-----------HHHHHhhhcchHHHHHHHHHHhc
Confidence 31 12244444555555555555443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.1e-07 Score=67.65 Aligned_cols=98 Identities=8% Similarity=0.056 Sum_probs=83.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 012360 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY 430 (465)
Q Consensus 353 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 430 (465)
+......+...+...|++++|.++|+-+.. .| +...|..|..++...|++++|+..|..+..++|+++.++..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 344555667778889999999999987644 33 6778899999999999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHHHhc
Q 012360 431 ALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 431 ~~~g~~~~a~~~~~~~~~~~ 450 (465)
...|+.+.|++.|+......
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999776543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00011 Score=64.72 Aligned_cols=226 Identities=12% Similarity=0.045 Sum_probs=111.4
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhccch-hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH--
Q 012360 193 VKAKQPEEALELFKKMIDEGVTPDE-EVMVSVLSACSSLS-NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL-- 268 (465)
Q Consensus 193 ~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 268 (465)
...++.++|+.++.++++. .|+. .+++..-.++...| +++++...++.+.+.+ +.+..+|+....++.+.|+.
T Consensus 48 ~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 48 ASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence 3344555555555555542 2222 22222222222333 3455555555555443 22233344333333333332
Q ss_pred HHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CC----HHHHH
Q 012360 269 EEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS---GL----ITEGC 338 (465)
Q Consensus 269 ~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---~~----~~~a~ 338 (465)
++++.+++++. ..|..+|+...-.+...|+++++++.++++++.+.. |...|+.....+.+. |. .++.+
T Consensus 125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHH
Confidence 44455554443 234556666666666667777777777777665422 334444444333332 22 23455
Q ss_pred HHHHHhhcCCCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcC------------
Q 012360 339 QLFRRMGGVYRVQPTIEHFVCLVDLLSRA----GLLYQAEEFIKIMPA-ED-KFISYKALLSACITYS------------ 400 (465)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~------------ 400 (465)
....++.. ..+-+...|+.+...+... ++..+|.+++.+... ++ +......|+..|+...
T Consensus 204 ~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 204 KYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 55555553 2234566666666666552 334556666655433 22 4445556666665421
Q ss_pred ------ChHHHHHHHHHHHHhCCCCchhHH
Q 012360 401 ------EFDLGKKVANNMMKLGNQSHEAYV 424 (465)
Q Consensus 401 ------~~~~a~~~~~~~~~~~p~~~~~~~ 424 (465)
..++|.++++.+.+.+|-....|.
T Consensus 282 ~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~ 311 (320)
T PLN02789 282 LAEELSDSTLAQAVCSELEVADPMRRNYWA 311 (320)
T ss_pred cccccccHHHHHHHHHHHHhhCcHHHHHHH
Confidence 336677777777555565555333
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.52 E-value=3e-06 Score=75.94 Aligned_cols=123 Identities=12% Similarity=0.121 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHH
Q 012360 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACI 397 (465)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~ 397 (465)
....|+..+...++++.|+.+++++.+. .|+ ....+++.+...++..+|.+++++... .| +...+..-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3455666677788999999999999864 355 445688888888999999999887654 33 5556666777888
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 398 TYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 398 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
..++++.|+++.+++++..|.+..+|..|+.+|.+.|+++.|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999998775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00013 Score=72.04 Aligned_cols=233 Identities=8% Similarity=0.024 Sum_probs=110.1
Q ss_pred hHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcC
Q 012360 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDME 165 (465)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~ 165 (465)
.+..|+..+...+++++|.++.+...+.. +.....|-.+...+.+.++.+.+..+ .+ +.......
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~------------l~~~~~~~ 97 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NL------------IDSFSQNL 97 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hh------------hhhccccc
Confidence 45556666666666666666666554432 22222233333345555554444433 11 12222222
Q ss_pred ChHHHHHHHHHhhc--CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHH
Q 012360 166 LVDLAREVFDEIVD--KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243 (465)
Q Consensus 166 ~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 243 (465)
++.....+...+.. .+...+..+..+|-+.|+.++|.+.++++++.. +-|..+.+.+...++.. ++++|..++.+.
T Consensus 98 ~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 98 KWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred chhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 22222222222211 133355556666666666666666666666654 33455556666666555 666666666655
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHH
Q 012360 244 LQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK-GIKPNEATFV 322 (465)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~ 322 (465)
+.. +...+++..+.+++.++..-++.- .+.-..+.+++... |..--..++.
T Consensus 176 V~~---------------~i~~kq~~~~~e~W~k~~~~~~~d-------------~d~f~~i~~ki~~~~~~~~~~~~~~ 227 (906)
T PRK14720 176 IYR---------------FIKKKQYVGIEEIWSKLVHYNSDD-------------FDFFLRIERKVLGHREFTRLVGLLE 227 (906)
T ss_pred HHH---------------HHhhhcchHHHHHHHHHHhcCccc-------------chHHHHHHHHHHhhhccchhHHHHH
Confidence 443 344445555666555544332221 12222222222222 1122233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHH
Q 012360 323 SVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365 (465)
Q Consensus 323 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 365 (465)
.+...|...+++++++.+++.+.+. -+.|......++.+|.
T Consensus 228 ~l~~~y~~~~~~~~~i~iLK~iL~~--~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 228 DLYEPYKALEDWDEVIYILKKILEH--DNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHhc--CCcchhhHHHHHHHHH
Confidence 4555566666666666666666632 1223444444444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2e-05 Score=70.17 Aligned_cols=164 Identities=16% Similarity=0.058 Sum_probs=121.3
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHH
Q 012360 281 KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360 (465)
Q Consensus 281 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 360 (465)
++...+...+.+......-..+..++.+-.+. .-...-|.. ...+...|.+++|+..++.+.. ..+-|+......
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~-A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~ 346 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGR-ALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELA 346 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHH-HHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHH
Confidence 34455555555444333333333333322221 112233433 3345577999999999999986 444566667788
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC-CCc-cchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHH
Q 012360 361 VDLLSRAGLLYQAEEFIKIMPA-EDK-FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTE 438 (465)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 438 (465)
.+.+.+.++.++|.+.++++.. .|+ ...+-.+..++.+.|++.+|+.+++......|+++..|..|+.+|...|+..+
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHH
Confidence 8999999999999999998865 454 66778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 012360 439 VAEARRNMKEL 449 (465)
Q Consensus 439 a~~~~~~~~~~ 449 (465)
+.....+....
T Consensus 427 a~~A~AE~~~~ 437 (484)
T COG4783 427 ALLARAEGYAL 437 (484)
T ss_pred HHHHHHHHHHh
Confidence 99888766543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00092 Score=60.62 Aligned_cols=425 Identities=11% Similarity=0.067 Sum_probs=247.4
Q ss_pred CCcchhhhHHHHHHHccCChHHHHHHhccCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHH
Q 012360 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFR---DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILF 91 (465)
Q Consensus 15 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 91 (465)
+-|+..|+.||.-+... ..++++.+++++..+ ....|..-|..-.+.++++....+|.+....-+ +...|..-+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHH
Confidence 56888999999988877 899999999998733 667899999999999999999999999877633 444554444
Q ss_pred HHhcc-hhhhhh----hhHHHHHHH-HhCCcc-chhhHHHHHHH---------HHhCCChHHHHHHHHhhCCCCC-----
Q 012360 92 SACAR-LEKLHY----GKTVHCYAT-KVGLEY-MLNMENALLLM---------YAKCKEMDEALRLFDEMGSRRN----- 150 (465)
Q Consensus 92 ~~~~~-~~~~~~----a~~~~~~~~-~~~~~~-~~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~~~~----- 150 (465)
.---+ .++... ..+.|+-.. +.|..+ +..+|+..+.. |....+++...+++.++-..|=
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 32221 122222 223333333 334332 23345555443 2334456677788888733431
Q ss_pred ----chhHHHHHHHHH-------hcCChHHHHHHHHHhhc------C--------C-------hHHHHHHHHHHHHcCC-
Q 012360 151 ----IVSLNILINGYI-------DMELVDLAREVFDEIVD------K--------D-------IVLWRSMMHGCVKAKQ- 197 (465)
Q Consensus 151 ----~~~~~~l~~~~~-------~~~~~~~a~~~~~~~~~------~--------~-------~~~~~~l~~~~~~~g~- 197 (465)
-.+|..=|+... +...+..|.++++++.. . . +..|-.+|.--..++-
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 112211111111 23345555555555411 0 0 0112222221111110
Q ss_pred -------hhHHHHHHHHH-HHcCCCCCHHHHH-HHH----HHhccchh-------hHhHHHHHHHHHHcCCCCChhHHHH
Q 012360 198 -------PEEALELFKKM-IDEGVTPDEEVMV-SVL----SACSSLSN-------LQYGRLVHRFILQNNITQDAFVKTA 257 (465)
Q Consensus 198 -------~~~a~~~~~~~-~~~~~~~~~~~~~-~ll----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~ 257 (465)
.....-.+++. .-.+..|+..... ..+ +.+...|+ .+++..+++...+.-...+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111122221 1123333322111 011 11222232 3455556665554332333334433
Q ss_pred HHHHHHhcC---CHHHHHHHHhcCCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 012360 258 LIDMYSKCG---SLEEALVTFYKTDC----KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACR 329 (465)
Q Consensus 258 l~~~~~~~~---~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~ 329 (465)
+...--..- ..+.....+++... .-..+|..++..-.+..-...|..+|.+..+.+..+ +...+.+++.-+|
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC 413 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh
Confidence 333221111 24444455544332 233477788888888889999999999999998877 5567777777666
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC-----ccchHHHHHHHHHhcCChHH
Q 012360 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED-----KFISYKALLSACITYSEFDL 404 (465)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~ 404 (465)
. ++.+-|.++|+--.+.++ .++......++-+...++-..|..+|++..... ....|..++.--..-|+...
T Consensus 414 s-kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 414 S-KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred c-CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 5 889999999998886543 344455677888899999999999999886541 44789999999999999999
Q ss_pred HHHHHHHHHHhCCCCc----hhHHHHHHHHhhcCChHHHHHHHHH
Q 012360 405 GKKVANNMMKLGNQSH----EAYVLLSNFYALEGHWTEVAEARRN 445 (465)
Q Consensus 405 a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~ 445 (465)
+.++-++....-|.+. ..-..+++-|.-.+.+..-..-++.
T Consensus 491 i~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~ 535 (656)
T KOG1914|consen 491 ILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKF 535 (656)
T ss_pred HHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHh
Confidence 9999998888666221 1244556666666665554444433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.6e-06 Score=64.11 Aligned_cols=108 Identities=14% Similarity=0.156 Sum_probs=86.3
Q ss_pred HHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 340 LFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 340 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
.++++.. .+| +......+...+...|++++|.+.++.+.. +.+...|..+...+...|++++|...++++++.+
T Consensus 5 ~~~~~l~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLG---LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHc---CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455553 234 445566777888889999999999888644 3366778888888888999999999999999999
Q ss_pred CCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 417 NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 417 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
|+++..+..++..+...|++++|...+++..+..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 9998889999999999999999999998776654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.7e-05 Score=62.44 Aligned_cols=192 Identities=12% Similarity=0.066 Sum_probs=108.0
Q ss_pred hhHhHHHHHHHHHH---cC-CCCChh-HHHHHHHHHHhcCCHHHHHHHHhcCCC--CChh-hHHHHHHHHHHcCChHHHH
Q 012360 232 NLQYGRLVHRFILQ---NN-ITQDAF-VKTALIDMYSKCGSLEEALVTFYKTDC--KDVV-TWTTMIEGLANYGLGNEAL 303 (465)
Q Consensus 232 ~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~ 303 (465)
+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|..+++.+.. |+.. .-..-...+-..|++++|+
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHH
Confidence 44555555555443 12 333333 344555555666777777666665442 2221 1111122233456777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-
Q 012360 304 RVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA- 382 (465)
Q Consensus 304 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 382 (465)
++++.+.+.. +.|..++..=+...-..|+..+|++-+.+..+ .+..|...|..+.+.|...|++++|.-.++++.-
T Consensus 107 e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 107 EYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 7777777663 22445555555555556666677776666665 4556777777777777777777777777776532
Q ss_pred CC-ccchHHHHHHHHHhcC---ChHHHHHHHHHHHHhCCCCchhHHHH
Q 012360 383 ED-KFISYKALLSACITYS---EFDLGKKVANNMMKLGNQSHEAYVLL 426 (465)
Q Consensus 383 ~~-~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~~~~~~~l 426 (465)
.| ++..+..+...+...| +.+.|.++|.+++++.|.+...+..+
T Consensus 184 ~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 184 QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 44 4444555555544333 56667777777777777554434333
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0021 Score=61.96 Aligned_cols=410 Identities=15% Similarity=0.106 Sum_probs=232.4
Q ss_pred HccCChHHHHHHhccCCC--CCcccHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhh
Q 012360 29 GRMALFTDARVLFDKMPF--RDVGSWNTLMSI--YNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGK 104 (465)
Q Consensus 29 ~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 104 (465)
...+++.+|....+.+.+ ||. .|...+.+ +.+.|+.++|..+++.....+.. |..|...+-..|...+..++|.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 346788888888877653 332 33444444 45788999999888888766544 7778888888888899999999
Q ss_pred HHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh--CCCCCchhHHHHHHHHHhcC----------ChHHHHH
Q 012360 105 TVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM--GSRRNIVSLNILINGYIDME----------LVDLARE 172 (465)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~----------~~~~a~~ 172 (465)
.++++..+. .|+......+..+|.+.+.+.+-.+.=-++ ..+.+...+-.+++.+.+.- -..-|.+
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 999988876 455666777788888888776544333333 22334444445555554321 1233555
Q ss_pred HHHHhhcCCh--HH---HHHHHHHHHHcCChhHHHHHHH-HHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHc
Q 012360 173 VFDEIVDKDI--VL---WRSMMHGCVKAKQPEEALELFK-KMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246 (465)
Q Consensus 173 ~~~~~~~~~~--~~---~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 246 (465)
.++.+.+.+. .+ ...-...+...|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 6666644431 11 1111233456788888888883 3433323333344445666677788888888888888887
Q ss_pred CCCCChhHHHHHHHHHHh----------------cCCHHHHHHHHhcCCCC-ChhhHHHHHHHHH---HcCChHHHHHHH
Q 012360 247 NITQDAFVKTALIDMYSK----------------CGSLEEALVTFYKTDCK-DVVTWTTMIEGLA---NYGLGNEALRVF 306 (465)
Q Consensus 247 ~~~~~~~~~~~l~~~~~~----------------~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~---~~~~~~~a~~~~ 306 (465)
|. |. |...++.+.+ .+..+...+..++.... .-..|-+-+.++. ..|+.+++...|
T Consensus 256 ~~--Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y 331 (932)
T KOG2053|consen 256 GN--DD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYY 331 (932)
T ss_pred CC--cc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHH
Confidence 62 21 2222222111 11222222222222211 1122333333332 346666655444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChh-------hHHHHHHHHHhcCC-----HHHHH
Q 012360 307 YQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE-------HFVCLVDLLSRAGL-----LYQAE 374 (465)
Q Consensus 307 ~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~-----~~~A~ 374 (465)
-+ +-|..| .|..=+..|...=..+.-..++...... .++.. -+...+..-.-.|. .+.-.
T Consensus 332 ~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~---~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~ 403 (932)
T KOG2053|consen 332 FK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA---DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSIL 403 (932)
T ss_pred HH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc---CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHH
Confidence 33 223344 2233334444444555556666666532 22221 12222222233342 22222
Q ss_pred HHHHhC----CC--------CCcc---------chHHHHHHHHHhcCCh---HHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 012360 375 EFIKIM----PA--------EDKF---------ISYKALLSACITYSEF---DLGKKVANNMMKLGNQSHEAYVLLSNFY 430 (465)
Q Consensus 375 ~~~~~~----~~--------~~~~---------~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 430 (465)
.++.+. .. -|.. .+-+.|+..+.+.++. -+|+-+++......|.+..+-..++..|
T Consensus 404 a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY 483 (932)
T KOG2053|consen 404 AYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIY 483 (932)
T ss_pred HHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 333221 10 0111 1346677888887764 4788888888889999999888999999
Q ss_pred hhcCChHHHHHHHHHHHHhcCCCC
Q 012360 431 ALEGHWTEVAEARRNMKELQTRKK 454 (465)
Q Consensus 431 ~~~g~~~~a~~~~~~~~~~~~~~~ 454 (465)
.-.|-+..|.+.++.+.-..|..+
T Consensus 484 ~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 484 SYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHhcCChhHHHHHHhcchHHhhhc
Confidence 999999999999998765555443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.38 E-value=2e-05 Score=61.16 Aligned_cols=113 Identities=15% Similarity=0.145 Sum_probs=50.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC--hhhHHHHHHHHHhcCC
Q 012360 296 YGLGNEALRVFYQMERKGIKPNE----ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT--IEHFVCLVDLLSRAGL 369 (465)
Q Consensus 296 ~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 369 (465)
.++...+...++.+.+. .|+. .....+...+...|++++|...|+.+... ...|+ ......|...+...|+
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCC
Confidence 45555555555555554 2221 12223334455555666666666555543 11111 1122234444555555
Q ss_pred HHHHHHHHHhCCCCC-ccchHHHHHHHHHhcCChHHHHHHHHH
Q 012360 370 LYQAEEFIKIMPAED-KFISYKALLSACITYSEFDLGKKVANN 411 (465)
Q Consensus 370 ~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 411 (465)
+++|...++.....+ .+..+...+..+...|++++|...|++
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555554433221 223334444445555555555555544
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.4e-05 Score=61.53 Aligned_cols=183 Identities=9% Similarity=0.039 Sum_probs=143.4
Q ss_pred cCCHHHHHHHHhcCCC--------CChh-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCH
Q 012360 265 CGSLEEALVTFYKTDC--------KDVV-TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV-SVLAACRHSGLI 334 (465)
Q Consensus 265 ~~~~~~a~~~~~~~~~--------~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~~~~ 334 (465)
..+.++..+++..+.. ++.. .|..++-+....|+.+.|...++.+.+. -|.+.-.. .-..-+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhch
Confidence 4678888888876542 2332 5666677778889999999999999887 36543322 222334567999
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 012360 335 TEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNM 412 (465)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 412 (465)
++|+++++.+.++ -+.|..++..-+-.....|+.-+|++-+....+ ..|...|..+...|...|+++.|.-+++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999975 355677777777778888988888887776654 358899999999999999999999999999
Q ss_pred HHhCCCCchhHHHHHHHHhhcCC---hHHHHHHHHHHHHhcC
Q 012360 413 MKLGNQSHEAYVLLSNFYALEGH---WTEVAEARRNMKELQT 451 (465)
Q Consensus 413 ~~~~p~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~ 451 (465)
+-..|.++..+..++..+.-.|- .+-|++++.+..+...
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 99999999999999999888774 4558889888776544
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0037 Score=60.32 Aligned_cols=380 Identities=14% Similarity=0.104 Sum_probs=216.9
Q ss_pred HHccCChHHHHHHhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhh
Q 012360 28 YGRMALFTDARVLFDKMP---FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGK 104 (465)
Q Consensus 28 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 104 (465)
+.+.|+.++|..+++... ..|..+...+-..|...++.++|..+|++.... -|+......+..+|++.+++..-.
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 367799999999998765 337789999999999999999999999999876 477777888889999998887766
Q ss_pred HHHHHHHHhCCccchhhHHHHHHHHHhCC-C---------hHHHHHHHHhhCCCC-Cchh---HHHHHHHHHhcCChHHH
Q 012360 105 TVHCYATKVGLEYMLNMENALLLMYAKCK-E---------MDEALRLFDEMGSRR-NIVS---LNILINGYIDMELVDLA 170 (465)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~~A~~~~~~~~~~~-~~~~---~~~l~~~~~~~~~~~~a 170 (465)
++--++-+. .+.+...+=++++.....- . ..-|.+.++.+-..+ ...+ .......+...|++++|
T Consensus 131 kaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ea 209 (932)
T KOG2053|consen 131 KAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEA 209 (932)
T ss_pred HHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHH
Confidence 665555553 2333443334444444321 1 223555555551122 1111 22233455678889999
Q ss_pred HHHHHH-h----hcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH-----HHHHHHH--------hccchh
Q 012360 171 REVFDE-I----VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEV-----MVSVLSA--------CSSLSN 232 (465)
Q Consensus 171 ~~~~~~-~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~ll~~--------~~~~~~ 232 (465)
.+++.. . ...+...-+.-+..+...++|.+..++-.++...|.. |-.+ +..+-.. +...+.
T Consensus 210 l~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-dy~~~~~sv~klLe~~~~~~a~~~~s~~~~ 288 (932)
T KOG2053|consen 210 LEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-DYKIYTDSVFKLLELLNKEPAEAAHSLSKS 288 (932)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-chHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 999833 2 2235555667778888899999999999998887543 2111 1111111 111122
Q ss_pred hHhHHHHHHHHHHcCCCCChhHHHHHHHHHH---hcCCHHHHHHHH-hcCCC----------------------------
Q 012360 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYS---KCGSLEEALVTF-YKTDC---------------------------- 280 (465)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~-~~~~~---------------------------- 280 (465)
.+...+......... ....|-+-+.++. .-|+.+++...| ++...
T Consensus 289 l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~ 365 (932)
T KOG2053|consen 289 LDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLV 365 (932)
T ss_pred HHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhh
Confidence 233333333322221 1122222233332 346777654433 22110
Q ss_pred ---CChh-------hHHHHHHHHHHcC-----ChHHHHHHHHHHH---HCC------CCCCHH---------HHHHHHHH
Q 012360 281 ---KDVV-------TWTTMIEGLANYG-----LGNEALRVFYQME---RKG------IKPNEA---------TFVSVLAA 327 (465)
Q Consensus 281 ---~~~~-------~~~~l~~~~~~~~-----~~~~a~~~~~~m~---~~g------~~p~~~---------~~~~l~~~ 327 (465)
++.. .+...+......| ..+....++.+.. ++| +-|+.. +.+.+++.
T Consensus 366 ~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~ 445 (932)
T KOG2053|consen 366 LADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDL 445 (932)
T ss_pred ccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHH
Confidence 0100 0111111111122 1223333333321 222 334432 23566778
Q ss_pred HHhcCCHH---HHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC-ccchHHH-HHHHHHhcCCh
Q 012360 328 CRHSGLIT---EGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED-KFISYKA-LLSACITYSEF 402 (465)
Q Consensus 328 ~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~-l~~~~~~~~~~ 402 (465)
|.+.++.. +|+.+++.... .-+.+..+-..+++.|.-.|-+..|.++|..+..+. ...|... +..-+...|++
T Consensus 446 ~rktnd~~~l~eaI~LLE~glt--~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~ 523 (932)
T KOG2053|consen 446 WRKTNDLTDLFEAITLLENGLT--KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRS 523 (932)
T ss_pred HHhcCcHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccc
Confidence 88877755 56666666664 234456666789999999999999999999886432 1222222 22344556777
Q ss_pred HHHHHHHHHHHHhC
Q 012360 403 DLGKKVANNMMKLG 416 (465)
Q Consensus 403 ~~a~~~~~~~~~~~ 416 (465)
..+...++...+..
T Consensus 524 ~~~s~~~~~~lkfy 537 (932)
T KOG2053|consen 524 SFASNTFNEHLKFY 537 (932)
T ss_pred hhHHHHHHHHHHHH
Confidence 77777777776643
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.4e-05 Score=62.06 Aligned_cols=126 Identities=15% Similarity=0.132 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCCC-Ccc----chHHHH
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE-DKF----ISYKAL 392 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~----~~~~~l 392 (465)
..|..++..+ ..++...+...++.+...++-.+ .......+...+...|++++|...|+.+... |+. .....+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3455555555 47899999999999987532221 1334445778899999999999999988653 332 245567
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 012360 393 LSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNM 446 (465)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 446 (465)
...+...|++++|+..++.. ...+..+..+...+++|.+.|++++|+..|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 78889999999999999763 333455667889999999999999999999864
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.3e-06 Score=48.89 Aligned_cols=35 Identities=31% Similarity=0.390 Sum_probs=31.4
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch
Q 012360 50 GSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADK 84 (465)
Q Consensus 50 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 84 (465)
.+||+++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999998873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.2e-06 Score=56.82 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=59.6
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC-ChHHHHHHHHHHHHh
Q 012360 385 KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG-HWTEVAEARRNMKEL 449 (465)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~ 449 (465)
+..+|..++..+...|++++|+..|+++++.+|+++.+|..++.++...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 35678889999999999999999999999999999999999999999999 799999999987664
|
... |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.7e-05 Score=68.42 Aligned_cols=124 Identities=13% Similarity=0.095 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 012360 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSG 332 (465)
Q Consensus 254 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~ 332 (465)
....++..+...++++.|..+|+++.+.++.....++..+...++..+|.+++.+..+. .| +...+......+.+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 34456666667788888888888888777777777888888888888999999888866 34 4556666667788899
Q ss_pred CHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012360 333 LITEGCQLFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (465)
+++.|+.+.+++.. ..| +-.+|..|..+|.+.|+++.|+..++.++.
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999984 345 566899999999999999999999988764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.8e-05 Score=59.18 Aligned_cols=102 Identities=12% Similarity=0.016 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCc----cchHHHHH
Q 012360 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDK----FISYKALL 393 (465)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~ 393 (465)
++..+...+...|++++|...|+.+...+.-.+ ....+..+..++.+.|++++|...++.+.. .|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555555666666666666666654211101 123444455556666666666666655432 221 23455555
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 394 SACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.++...|++++|...++++++..|++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 5555566666666666666666655544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.4e-05 Score=67.07 Aligned_cols=111 Identities=17% Similarity=0.079 Sum_probs=90.0
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhc---CChHHHHHHHHHHHHhCCCCchhHHH
Q 012360 351 QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITY---SEFDLGKKVANNMMKLGNQSHEAYVL 425 (465)
Q Consensus 351 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~~ 425 (465)
+-|...|-.|...|...|+++.|..-|..... .+++..+..+..++... ....++..++++++..+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 55788888999999999999999988887643 44666777777666542 34678899999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcCCCCCCCeeee
Q 012360 426 LSNFYALEGHWTEVAEARRNMKELQTRKKPGNSIID 461 (465)
Q Consensus 426 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 461 (465)
|+..+...|++.+|...|+.|.+.....+|+.+.|+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 999999999999999999999988777777666543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.6e-06 Score=58.05 Aligned_cols=92 Identities=20% Similarity=0.217 Sum_probs=69.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC
Q 012360 357 FVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 434 (465)
+..+...+...|++++|...++.+.. .| +...+..+...+...+++++|.+.+++..+..|.+...+..++..+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 44566667777777777777776543 22 33566677777778888888888888888888888777888888888888
Q ss_pred ChHHHHHHHHHHHH
Q 012360 435 HWTEVAEARRNMKE 448 (465)
Q Consensus 435 ~~~~a~~~~~~~~~ 448 (465)
++++|...+++..+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888876654
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.9e-06 Score=47.77 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=28.9
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 012360 50 GSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVA 82 (465)
Q Consensus 50 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 82 (465)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578889999999999999999999998888877
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.22 E-value=1e-06 Score=61.05 Aligned_cols=78 Identities=13% Similarity=0.168 Sum_probs=44.9
Q ss_pred cCCHHHHHHHHHhCCC-CC---ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHH
Q 012360 367 AGLLYQAEEFIKIMPA-ED---KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEA 442 (465)
Q Consensus 367 ~g~~~~A~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 442 (465)
.|+++.|+.+++++.. .| +...+..+..++.+.|++++|+.++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3555566665555533 11 233444466666666777777776666 555555555555666777777777777766
Q ss_pred HHH
Q 012360 443 RRN 445 (465)
Q Consensus 443 ~~~ 445 (465)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.3e-05 Score=57.71 Aligned_cols=96 Identities=15% Similarity=-0.008 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCc----cchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC---chhHHHH
Q 012360 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDK----FISYKALLSACITYSEFDLGKKVANNMMKLGNQS---HEAYVLL 426 (465)
Q Consensus 355 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 426 (465)
.++..++..+.+.|++++|.+.|+.+.. .|+ ...+..++.++.+.|+++.|+..++++....|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3556677778888888888888887754 232 2356667888888888888888888888877764 4567888
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhc
Q 012360 427 SNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 427 ~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
+.++...|++++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 888888888888888888887664
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.5e-06 Score=54.11 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=47.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 392 LLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
+...+...|++++|++.|+++++..|.++..+..++.++.+.|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566778888888888888888888888888888888888888888888888887654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.4e-05 Score=65.44 Aligned_cols=163 Identities=13% Similarity=0.050 Sum_probs=111.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHH----------
Q 012360 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL--AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV---------- 358 (465)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------- 358 (465)
.++...+++++|...-....+. .++ ..+..++ .++...++.+.+...|++.. ...|+...-.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkl--d~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKL--DAT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhc--ccc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 4456678888888777776655 221 2333334 33445678888888888887 3345533221
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHhCCC-CC-----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 012360 359 ---CLVDLLSRAGLLYQAEEFIKIMPA-ED-----KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429 (465)
Q Consensus 359 ---~l~~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 429 (465)
.=.+-..+.|++.+|.+.+.+... .| +...|.....+..+.|+.++|+.-.+++.+++|.-...|..-+.+
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 112334578888999988887654 33 444566666777788999999999999999998888888888999
Q ss_pred HhhcCChHHHHHHHHHHHHhcCCCCCCCee
Q 012360 430 YALEGHWTEVAEARRNMKELQTRKKPGNSI 459 (465)
Q Consensus 430 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 459 (465)
+...++|++|.+.+++..+..-.+.+...|
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s~e~r~~l 360 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKDCEIRRTL 360 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 999999999999888776554444444433
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.7e-06 Score=46.14 Aligned_cols=33 Identities=36% Similarity=0.821 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 012360 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP 215 (465)
Q Consensus 183 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 215 (465)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.9e-06 Score=46.07 Aligned_cols=33 Identities=42% Similarity=0.766 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 012360 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPN 317 (465)
Q Consensus 285 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 317 (465)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888876
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.1e-05 Score=72.62 Aligned_cols=107 Identities=10% Similarity=0.031 Sum_probs=88.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcC
Q 012360 323 SVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYS 400 (465)
Q Consensus 323 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~ 400 (465)
.-...+...|++++|+..|+++.+. .+.+...|..+..+|...|++++|...++++.. .| +...|..++.+|...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 3456677889999999999999863 344677888889999999999999999988754 33 6678888999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 012360 401 EFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431 (465)
Q Consensus 401 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 431 (465)
++++|+..|+++++++|.++.+...+..+..
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999999999886666554433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=3e-05 Score=64.73 Aligned_cols=108 Identities=8% Similarity=-0.051 Sum_probs=67.3
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHH
Q 012360 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLG 405 (465)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a 405 (465)
+.+.+++.+|+..|.++++ -.+.|...|..=..+|.+.|.++.|.+-.+.... +| ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4455677777777777763 2223455555666667777777777766665543 33 445677777777777777777
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhhcCChH
Q 012360 406 KKVANNMMKLGNQSHEAYVLLSNFYALEGHWT 437 (465)
Q Consensus 406 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 437 (465)
++.|+++++++|++......|-.+--+.+...
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 77777777777777765555555544444433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.8e-05 Score=60.19 Aligned_cols=82 Identities=12% Similarity=-0.010 Sum_probs=57.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCc----cchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 012360 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDK----FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSN 428 (465)
Q Consensus 354 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 428 (465)
...+..+...+...|++++|...|++... .|+ ...+..++..+.+.|++++|+..++++++..|.+...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 34455566666666666666666665532 111 2456777777888888888888888888888888887888888
Q ss_pred HHhhcCC
Q 012360 429 FYALEGH 435 (465)
Q Consensus 429 ~~~~~g~ 435 (465)
++...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8877766
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.1e-05 Score=67.53 Aligned_cols=97 Identities=9% Similarity=-0.062 Sum_probs=78.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhc
Q 012360 289 MIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA 367 (465)
Q Consensus 289 l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 367 (465)
....+...|++++|+..|++.++. .| +...|..+..+|...|++++|+..++++... .+.+...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHh
Confidence 355677889999999999999887 44 4677888889999999999999999999853 234677888899999999
Q ss_pred CCHHHHHHHHHhCCC-CCccchH
Q 012360 368 GLLYQAEEFIKIMPA-EDKFISY 389 (465)
Q Consensus 368 g~~~~A~~~~~~~~~-~~~~~~~ 389 (465)
|++++|...|++... .|+....
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRF 106 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999988654 4443333
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0018 Score=50.27 Aligned_cols=130 Identities=7% Similarity=-0.003 Sum_probs=101.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC---ccchHH
Q 012360 315 KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED---KFISYK 390 (465)
Q Consensus 315 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~---~~~~~~ 390 (465)
.|+...-..|..+....|+..+|...|++...- -+..|......+.++....+++..|...++.+-+ +| .+..-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 677766677888889999999999999998852 3455777888888888899999999988887644 33 445566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 012360 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNM 446 (465)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 446 (465)
.+.+.+...|.+.+|+..|+.++...|.... ....+..+.++|+.+++..-+..+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~a-r~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQA-RIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHHH-HHHHHHHHHHhcchhHHHHHHHHH
Confidence 6778888899999999999999988876655 666777888888887766544444
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.02 E-value=6e-05 Score=53.51 Aligned_cols=93 Identities=12% Similarity=0.079 Sum_probs=50.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcC
Q 012360 323 SVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYS 400 (465)
Q Consensus 323 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 400 (465)
.+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++.... ..+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 3444455555666666666655532 122234455555555556666666666555432 123345556666666666
Q ss_pred ChHHHHHHHHHHHHhCC
Q 012360 401 EFDLGKKVANNMMKLGN 417 (465)
Q Consensus 401 ~~~~a~~~~~~~~~~~p 417 (465)
+++.|...+++..+..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 66666666666665554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.6e-05 Score=52.49 Aligned_cols=54 Identities=17% Similarity=0.333 Sum_probs=44.2
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 397 ITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
...|++++|+++|+++.+..|++..++..++.+|.+.|++++|..+++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467888888888888888888888888888888888888888888888776543
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.7e-05 Score=51.75 Aligned_cols=61 Identities=11% Similarity=0.033 Sum_probs=48.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc
Q 012360 360 LVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420 (465)
Q Consensus 360 l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 420 (465)
+...+.+.|++++|.+.|+.+.. .| +...+..+..++...|++++|...|+++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 45677888888888888888754 33 677788888889999999999999999999988874
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.5e-05 Score=51.65 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=47.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcC
Q 012360 394 SACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 451 (465)
..|.+.+++++|.++++++++.+|+++..+...+.++.+.|++++|.+.++...+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4567788888888888888888888888888888888888888888888887775543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00041 Score=65.47 Aligned_cols=140 Identities=11% Similarity=-0.000 Sum_probs=91.6
Q ss_pred CCChhhHHHHHHHHHHc--C---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhc--------CCHHHHHHHHHHhh
Q 012360 280 CKDVVTWTTMIEGLANY--G---LGNEALRVFYQMERKGIKPNE-ATFVSVLAACRHS--------GLITEGCQLFRRMG 345 (465)
Q Consensus 280 ~~~~~~~~~l~~~~~~~--~---~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~--------~~~~~a~~~~~~~~ 345 (465)
..|...|...+.+.... + ..+.|..+|++..+. .|+. ..+..+..++... .+...+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 45677787777764432 2 366888889988887 6764 4444444333221 12334444444433
Q ss_pred cCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 346 GVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 346 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.....+.+...|..+.-.....|++++|...++++.. +|+...|..++..+...|+.++|.+.++++..++|.+++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 2211233456677776666677888888888887654 566777888888888888888888888888888888876
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.1e-05 Score=64.65 Aligned_cols=88 Identities=18% Similarity=0.170 Sum_probs=78.4
Q ss_pred HHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHH
Q 012360 362 DLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEV 439 (465)
Q Consensus 362 ~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 439 (465)
+-+.+.+++.+|+..|.+... .| |...|..-..+|.+.|.++.|++-.+.++.++|.....|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 345678999999999988755 44 7788888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 012360 440 AEARRNMKEL 449 (465)
Q Consensus 440 ~~~~~~~~~~ 449 (465)
.+.|++..+.
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 9999876543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00012 Score=58.45 Aligned_cols=112 Identities=7% Similarity=-0.161 Sum_probs=79.6
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC----ccchHHHHHHHHHhcCChHHHHHHH
Q 012360 335 TEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED----KFISYKALLSACITYSEFDLGKKVA 409 (465)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~ 409 (465)
..+...+..+.+..+.......+..++..+...|++++|...|++... .+ ...+|..+...+...|++++|+..+
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 333444444432212233355667777777788888888888877632 12 2346888888999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHh-------hcCChHHHHHHHHHH
Q 012360 410 NNMMKLGNQSHEAYVLLSNFYA-------LEGHWTEVAEARRNM 446 (465)
Q Consensus 410 ~~~~~~~p~~~~~~~~l~~~~~-------~~g~~~~a~~~~~~~ 446 (465)
+++.+..|.....+..++..+. ..|++++|...+++.
T Consensus 96 ~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 96 FQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 9999999988888888888888 888888776666644
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00033 Score=60.94 Aligned_cols=135 Identities=11% Similarity=0.134 Sum_probs=100.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHH
Q 012360 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA-CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362 (465)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 362 (465)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+ .++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence 357778888888888999999999988542 2344555555544 3335677779999999986 45677888889999
Q ss_pred HHHhcCCHHHHHHHHHhCCCC-C----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 363 LLSRAGLLYQAEEFIKIMPAE-D----KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 363 ~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.+...|+.+.|..+|++.... + ....|...+..-.+.|+.+.+.++.+++.+.-|.+..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999987652 2 2347899999989999999999999999998887655
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.002 Score=56.31 Aligned_cols=219 Identities=9% Similarity=0.078 Sum_probs=121.3
Q ss_pred ChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCch--hhHHHHHHHhcchhhhhhhhHHH
Q 012360 33 LFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGI---VADK--ITLVILFSACARLEKLHYGKTVH 107 (465)
Q Consensus 33 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~~~~--~~~~~l~~~~~~~~~~~~a~~~~ 107 (465)
++++|..+|+. ....|-..|++++|.+.|.+...... .+.. ..|......+ +..+++.|...
T Consensus 30 ~~e~Aa~~y~~-----------Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~- 96 (282)
T PF14938_consen 30 DYEEAADLYEK-----------AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIEC- 96 (282)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHH-
T ss_pred CHHHHHHHHHH-----------HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHH-
Confidence 66666655554 56777788888888888877643211 1111 0122222222 12244444333
Q ss_pred HHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhc-CChHHHHHHHHHhhcC------
Q 012360 108 CYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM-ELVDLAREVFDEIVDK------ 180 (465)
Q Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~------ 180 (465)
+...+..|...|++..|-+.+..+ ...|... |++++|.+.|++...-
T Consensus 97 --------------~~~A~~~y~~~G~~~~aA~~~~~l------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~ 150 (282)
T PF14938_consen 97 --------------YEKAIEIYREAGRFSQAAKCLKEL------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGS 150 (282)
T ss_dssp --------------HHHHHHHHHHCT-HHHHHHHHHHH------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-
T ss_pred --------------HHHHHHHHHhcCcHHHHHHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 444556677777777777776665 3455555 6777777777766221
Q ss_pred ---ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-----CHH-HHHHHHHHhccchhhHhHHHHHHHHHHc--CCC
Q 012360 181 ---DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP-----DEE-VMVSVLSACSSLSNLQYGRLVHRFILQN--NIT 249 (465)
Q Consensus 181 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~ 249 (465)
-..++..+...+.+.|++++|.++|++........ +.. .|...+-++...||...|...++..... ++.
T Consensus 151 ~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 151 PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 12456677788899999999999999887643221 121 2222333455678888888888887654 222
Q ss_pred CC--hhHHHHHHHHHHh--cCCHHHHHHHHhcCCCCChhhHHHHH
Q 012360 250 QD--AFVKTALIDMYSK--CGSLEEALVTFYKTDCKDVVTWTTMI 290 (465)
Q Consensus 250 ~~--~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~l~ 290 (465)
.+ ......|+.++-. ...++.+..-|+.+.+-|...-..|+
T Consensus 231 ~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~ 275 (282)
T PF14938_consen 231 SSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLL 275 (282)
T ss_dssp TSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHH
Confidence 22 3345566666654 34567777777777766655444443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.8e-05 Score=42.62 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=23.3
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 012360 50 GSWNTLMSIYNDFSDSGEVLILFKQLIFEGI 80 (465)
Q Consensus 50 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 80 (465)
.+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677788888888888888888888777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.1e-05 Score=54.39 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=36.9
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 012360 296 YGLGNEALRVFYQMERKGIK-PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE 374 (465)
Q Consensus 296 ~~~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 374 (465)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|+.++++ .+. + +.+......+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-~-~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-D-PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH-H-HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC-C-CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35555666666665554211 1223333355555566666666666555 211 1 112233334455555555555555
Q ss_pred HHHH
Q 012360 375 EFIK 378 (465)
Q Consensus 375 ~~~~ 378 (465)
++++
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5554
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.015 Score=51.29 Aligned_cols=109 Identities=16% Similarity=0.206 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHh
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACIT 398 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 398 (465)
.+.+.-+.-+...|+...|.++-.+.. -|+...|...+.+++..+++++-.++... +..+.-|..++.+|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 355556677778898888887766654 38888999999999999999998887654 4567889999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHH
Q 012360 399 YSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARR 444 (465)
Q Consensus 399 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 444 (465)
.|+..+|..+..++ . +..-+..|.+.|++.+|.+.--
T Consensus 250 ~~~~~eA~~yI~k~--------~-~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 250 YGNKKEASKYIPKI--------P-DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CCCHHHHHHHHHhC--------C-hHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999888871 1 3567888899999999876543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00032 Score=56.31 Aligned_cols=130 Identities=11% Similarity=0.078 Sum_probs=84.0
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHH
Q 012360 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN--EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVC 359 (465)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 359 (465)
....+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...++++... .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 344566777777778888888888888776532222 346677777788888888888888887742 2234555666
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC
Q 012360 360 LVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434 (465)
Q Consensus 360 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 434 (465)
+..++...|+...+..-++.. ...+++|.++++++.+.+|++ +..++.-+...|
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 666777766665544332221 123677888899888888887 444444444444
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.014 Score=55.38 Aligned_cols=111 Identities=16% Similarity=0.145 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 012360 253 FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG 332 (465)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 332 (465)
-+.+--+.-+...|+..+|.++-.+..-||-..|-.-+.+++..+++++-+++-+.+. .+.-|..++.+|.+.|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~ 758 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQG 758 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcc
Confidence 3444455556666777777777777777777777777777777777776655544322 2455666677777777
Q ss_pred CHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 012360 333 LITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379 (465)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 379 (465)
+.++|.+++-+.. +.+ ..+.+|.+.|++.+|.++--+
T Consensus 759 n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 759 NKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHHHH
Confidence 7777777666554 111 456667777777776665433
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00017 Score=65.29 Aligned_cols=107 Identities=10% Similarity=0.044 Sum_probs=55.7
Q ss_pred cchhhhHHHHHHHccCChHHHHHHhccCCC-C-----CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHH
Q 012360 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPF-R-----DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90 (465)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 90 (465)
+......+++......+++.+..++-+... | -..+.+++++.|.+.|..+.++.+++.=...|+-||.++++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 444444455555555555555555444331 1 1234445555555555555555555555555555555555555
Q ss_pred HHHhcchhhhhhhhHHHHHHHHhCCccchhhHH
Q 012360 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMEN 123 (465)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 123 (465)
+..+.+.|++..|.++...|...+...+..++.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~ 177 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQA 177 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHH
Confidence 555555555555555555555544333333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.031 Score=52.80 Aligned_cols=247 Identities=14% Similarity=0.036 Sum_probs=133.2
Q ss_pred ChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCC--------chhhHHHHHHHhcchhhhhhh
Q 012360 33 LFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFE-GIVA--------DKITLVILFSACARLEKLHYG 103 (465)
Q Consensus 33 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~--------~~~~~~~l~~~~~~~~~~~~a 103 (465)
.+++|.++.+. .|....|..+.....+.-.++.|...|-+.... |++. +...-..=+. +--|++++|
T Consensus 678 gledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feea 753 (1189)
T KOG2041|consen 678 GLEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEA 753 (1189)
T ss_pred chHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHh
Confidence 35666666654 345567777777666666666666666554321 2110 0000011111 224677777
Q ss_pred hHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCC----chhHHHHHHHHHhcCChHHHHHHHHHhhc
Q 012360 104 KTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN----IVSLNILINGYIDMELVDLAREVFDEIVD 179 (465)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 179 (465)
++++-.+.+.. ..+..+.+.||+-...++++.=+...| ..+|+.+...++....+++|.+.|.....
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77776665542 345566677777777777665422222 23567777777777777777777655422
Q ss_pred CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHH
Q 012360 180 KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALI 259 (465)
Q Consensus 180 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 259 (465)
. ...+.++.+..++++-..+...+ +.+....-.+...+.+.|.-++|.+.+-+. +. | ...+
T Consensus 825 ~-----e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv 885 (1189)
T KOG2041|consen 825 T-----ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAV 885 (1189)
T ss_pred h-----HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHH
Confidence 1 12344455554454444433333 334455556666677777777766555332 11 1 1245
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhhHHH--------------HHHHHHHcCChHHHHHHHHHHHH
Q 012360 260 DMYSKCGSLEEALVTFYKTDCKDVVTWTT--------------MIEGLANYGLGNEALRVFYQMER 311 (465)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------------l~~~~~~~~~~~~a~~~~~~m~~ 311 (465)
..|...+++.+|.++-++..-|.+.+.-+ -|..+.+.|+.-+|.+++.+|-+
T Consensus 886 ~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 886 HTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 56667777777777777665554433211 13334455555566666666543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.023 Score=50.88 Aligned_cols=409 Identities=12% Similarity=0.064 Sum_probs=213.4
Q ss_pred HHHccCChHHHHHHhccCCCC---C------cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHh--c
Q 012360 27 FYGRMALFTDARVLFDKMPFR---D------VGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSAC--A 95 (465)
Q Consensus 27 ~~~~~~~~~~A~~~~~~~~~~---~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~--~ 95 (465)
.+.+.+++.+|..+|.++-.. + ...-+.++++|.. ++.+.....+....+. .| ...|..+..++ .
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 345678888999888877622 2 1233455666554 4555555555555553 23 34455555544 4
Q ss_pred chhhhhhhhHHHHHHHHh--CCcc------------chhhHHHHHHHHHhCCChHHHHHHHHhh-------CCCCCchhH
Q 012360 96 RLEKLHYGKTVHCYATKV--GLEY------------MLNMENALLLMYAKCKEMDEALRLFDEM-------GSRRNIVSL 154 (465)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~ 154 (465)
+.+.++.|.+.+...... +..+ |...-+..+.++...|.+.+++.+++++ ...-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 678888888888776655 2221 2222355677788888888888888888 223466677
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHh-------hcCCh----------HHHHHHHHHHHHc--CChhHHHHHHHH
Q 012360 155 NILINGYIDM--------ELVDLAREVFDEI-------VDKDI----------VLWRSMMHGCVKA--KQPEEALELFKK 207 (465)
Q Consensus 155 ~~l~~~~~~~--------~~~~~a~~~~~~~-------~~~~~----------~~~~~l~~~~~~~--g~~~~a~~~~~~ 207 (465)
+.++-.+.+. ...+-+.+.++.+ ...+. .....++....-. .+..--.++++.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 7644333321 2222222222222 11111 1122222222111 122222333333
Q ss_pred HHHcCCCCCHHH-HHHHHHHhccchhhHhHHHHHHHHHHcCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHhcCC--C
Q 012360 208 MIDEGVTPDEEV-MVSVLSACSSLSNLQYGRLVHRFILQNNITQ----DAFVKTALIDMYSKCGSLEEALVTFYKTD--C 280 (465)
Q Consensus 208 ~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~ 280 (465)
-...-+.|+... ...+...+.+ +.+++..+.+.+....+.+ -..++..++...++.++...|.+.+.-+. +
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 333334454222 2233333333 4555555555554432211 23456667777777777777776665433 3
Q ss_pred CChhhH-------HHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHH-HHHHHH---HHHHhcCC-HHHHHHHHHHh
Q 012360 281 KDVVTW-------TTMIEGLAN----YGLGNEALRVFYQMERKGIKPNEA-TFVSVL---AACRHSGL-ITEGCQLFRRM 344 (465)
Q Consensus 281 ~~~~~~-------~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~---~~~~~~~~-~~~a~~~~~~~ 344 (465)
|+...- ..+-...+. .-+...=+.+|.......+ |.. ....|+ .-+.+.|. -++|+.+++.+
T Consensus 329 p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~i 406 (549)
T PF07079_consen 329 PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLI 406 (549)
T ss_pred CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 432211 111222221 1123333455555554422 221 222222 33455565 78889999988
Q ss_pred hcCCCCCC-ChhhHHHHH----HHHHhc---CCHHHHHH---HHHhCCCCC----ccchHHHHHHH--HHhcCChHHHHH
Q 012360 345 GGVYRVQP-TIEHFVCLV----DLLSRA---GLLYQAEE---FIKIMPAED----KFISYKALLSA--CITYSEFDLGKK 407 (465)
Q Consensus 345 ~~~~~~~~-~~~~~~~l~----~~~~~~---g~~~~A~~---~~~~~~~~~----~~~~~~~l~~~--~~~~~~~~~a~~ 407 (465)
.+ +.+ |..+-+.+. ..|..+ ..+.+-.+ ..++..-.| +...-|.|..+ +...|++.++.-
T Consensus 407 l~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ 483 (549)
T PF07079_consen 407 LQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYL 483 (549)
T ss_pred HH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 84 233 333333221 122211 11222222 222222222 23344555544 457899999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 408 VANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 408 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
.-....+..| ++.+|..++.++....++++|..++..+.
T Consensus 484 ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 484 YSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 8888889999 77789999999999999999999998763
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00032 Score=49.51 Aligned_cols=80 Identities=18% Similarity=-0.000 Sum_probs=65.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCchhhHHHHHHHhcch--------hhhhhhhHHHHHHHHhCCccchhhH
Q 012360 52 WNTLMSIYNDFSDSGEVLILFKQLIFEGI-VADKITLVILFSACARL--------EKLHYGKTVHCYATKVGLEYMLNME 122 (465)
Q Consensus 52 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (465)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++. +++-..+.+++.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777999999999999999999 89999999999887653 2455677888888888888999999
Q ss_pred HHHHHHHHh
Q 012360 123 NALLLMYAK 131 (465)
Q Consensus 123 ~~l~~~~~~ 131 (465)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888887764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00027 Score=61.49 Aligned_cols=129 Identities=11% Similarity=0.087 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHhCCC--CCccchHHHHHHH
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR-AGLLYQAEEFIKIMPA--EDKFISYKALLSA 395 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 395 (465)
.+|..+++..-+.+..+.|..+|.++.+.. ..+..+|......-.. .++.+.|.++|+.... ..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 467788888888999999999999999642 2344555555544334 5677779999998765 4477889999999
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 396 CITYSEFDLGKKVANNMMKLGNQSH---EAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 396 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
+...++.+.|..+|++++..-|... .+|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998765544 47999999999999999999999988764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=6.9e-05 Score=49.56 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=49.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcC-ChHHHHHHHHHHHHhCC
Q 012360 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYS-EFDLGKKVANNMMKLGN 417 (465)
Q Consensus 353 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 417 (465)
++..|..+...+...|++++|+..|++... +.++..|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345677777778888888888887776543 336667888888888888 68888888888888877
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00093 Score=47.26 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=66.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHhccch--------hhHhHHHHHHHHHHcCCCCChhHH
Q 012360 185 WRSMMHGCVKAKQPEEALELFKKMIDEGV-TPDEEVMVSVLSACSSLS--------NLQYGRLVHRFILQNNITQDAFVK 255 (465)
Q Consensus 185 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 255 (465)
-...|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. +.-....+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666777999999999999999999 899999999998866432 345677889999999999999999
Q ss_pred HHHHHHHHhc
Q 012360 256 TALIDMYSKC 265 (465)
Q Consensus 256 ~~l~~~~~~~ 265 (465)
+.++..+.+.
T Consensus 108 nivl~~Llkg 117 (120)
T PF08579_consen 108 NIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHh
Confidence 9998887653
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00033 Score=53.70 Aligned_cols=82 Identities=12% Similarity=0.053 Sum_probs=38.8
Q ss_pred HhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHH
Q 012360 365 SRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEA 442 (465)
Q Consensus 365 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 442 (465)
...|++++|..+|+-+.. .-+...|..|..++...+++++|+..|..+..+++++|.++...+.++...|+.+.|+..
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHH
Confidence 344445555544443322 123334444444444455555555555555555555555555555555555555555554
Q ss_pred HHHH
Q 012360 443 RRNM 446 (465)
Q Consensus 443 ~~~~ 446 (465)
|+..
T Consensus 128 f~~a 131 (165)
T PRK15331 128 FELV 131 (165)
T ss_pred HHHH
Confidence 4433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00084 Score=53.64 Aligned_cols=100 Identities=8% Similarity=-0.038 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHH
Q 012360 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACI 397 (465)
Q Consensus 321 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~ 397 (465)
+..+...+...|++++|+..|++......-++ ...++..+..++...|++++|.+.++.... .| ...++..+...+.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 33444444444555555555555542211001 122444455555555555555555544322 11 2223333333333
Q ss_pred -------hcCChH-------HHHHHHHHHHHhCCCCc
Q 012360 398 -------TYSEFD-------LGKKVANNMMKLGNQSH 420 (465)
Q Consensus 398 -------~~~~~~-------~a~~~~~~~~~~~p~~~ 420 (465)
..|+++ +|..++++.....|++.
T Consensus 118 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 118 YRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 556655 45555555666666543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0034 Score=53.26 Aligned_cols=171 Identities=10% Similarity=0.009 Sum_probs=97.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC--CCh-hh---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 012360 257 ALIDMYSKCGSLEEALVTFYKTDC--KDV-VT---WTTMIEGLANYGLGNEALRVFYQMERKGIKPN--EATFVSVLAAC 328 (465)
Q Consensus 257 ~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~ 328 (465)
.....+...|++++|.+.|+.+.. |+. .. .-.++.++.+.+++++|...+++..+. .|+ ...+...+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHH
Confidence 344555667777777777776653 221 11 233455667777777777777777665 332 12222223222
Q ss_pred Hh--cC---------------C---HHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccch
Q 012360 329 RH--SG---------------L---ITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFIS 388 (465)
Q Consensus 329 ~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 388 (465)
+. .+ + ...|+..|+.+++. -|+.. -..+|...+..+...- ...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---yP~S~-------------ya~~A~~rl~~l~~~l-a~~ 177 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---YPNSQ-------------YTTDATKRLVFLKDRL-AKY 177 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---CcCCh-------------hHHHHHHHHHHHHHHH-HHH
Confidence 21 11 1 12344444444432 12221 1223333222221100 001
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch---hHHHHHHHHhhcCChHHHHHHHHHH
Q 012360 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHE---AYVLLSNFYALEGHWTEVAEARRNM 446 (465)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~ 446 (465)
-..+.+.|.+.|.+..|+.-++.+++.-|+.+. ....++.+|...|..++|..+.+.+
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 124566788999999999999999998876655 5678889999999999999887755
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=5.6e-05 Score=40.60 Aligned_cols=29 Identities=38% Similarity=0.668 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012360 285 TWTTMIEGLANYGLGNEALRVFYQMERKG 313 (465)
Q Consensus 285 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 313 (465)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.034 Score=49.76 Aligned_cols=128 Identities=11% Similarity=0.132 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh-CCCCCccchH-HHHHHHHH
Q 012360 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI-MPAEDKFISY-KALLSACI 397 (465)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~-~~l~~~~~ 397 (465)
.|...++.-.+....+.|..+|-++.+..-+.+++..+++++..+ ..|+..-|.++|+- |..-||...| ...+..+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 455566666677778888888888886632567788888888754 45778888888875 4444555554 44556667
Q ss_pred hcCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 398 TYSEFDLGKKVANNMMKLGNQS--HEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 398 ~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
..++-+.|..+|+..++.-..+ ..+|..++.--..-|+...+..+-++|.+
T Consensus 478 ~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 478 RINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 7888888888888766633222 44577888888888888777666665543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.001 Score=51.71 Aligned_cols=69 Identities=20% Similarity=0.309 Sum_probs=55.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH-----HhcCCCCCC
Q 012360 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK-----ELQTRKKPG 456 (465)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~ 456 (465)
....++..+...|++++|+..+++++..+|-+...|..++.+|...|+..+|.++|+++. +.|+.|+|.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 456677788899999999999999999999999999999999999999999999998874 468877764
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00066 Score=49.92 Aligned_cols=55 Identities=15% Similarity=0.004 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCC---CchhHHHHHHHHhhcCChHHHHHHH
Q 012360 389 YKALLSACITYSEFDLGKKVANNMMKLGNQ---SHEAYVLLSNFYALEGHWTEVAEAR 443 (465)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~ 443 (465)
+-.+...+...|++++|..++++.....|+ +......++.++...|+.++|.+.+
T Consensus 41 ~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 41 LIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWL 98 (120)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 334445555555555555555555554444 3333444445555555555555444
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.023 Score=48.23 Aligned_cols=58 Identities=19% Similarity=0.129 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 012360 323 SVLAACRHSGLITEGCQLFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIM 380 (465)
Q Consensus 323 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 380 (465)
.+..-|.+.|.+..|..-++.+.+.+.-.| .......++.+|...|..++|.++...+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 345557777888888877777776432222 3444556677777777777777766544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0046 Score=47.31 Aligned_cols=90 Identities=8% Similarity=-0.074 Sum_probs=44.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC--CCCccchHHHHHHHHHhcCCh
Q 012360 325 LAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP--AEDKFISYKALLSACITYSEF 402 (465)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 402 (465)
..-+...|++++|.++|+-+..- -+-+...|..|.-++-..|++++|+..|.... ...++..+-.+..++...|+.
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 33344455555555555555421 12233444455555555555555555555432 133445555555555555555
Q ss_pred HHHHHHHHHHHHhC
Q 012360 403 DLGKKVANNMMKLG 416 (465)
Q Consensus 403 ~~a~~~~~~~~~~~ 416 (465)
+.|.+.|+.++...
T Consensus 120 ~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 120 CYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555533
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0026 Score=60.19 Aligned_cols=135 Identities=17% Similarity=0.114 Sum_probs=96.3
Q ss_pred CCCCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHhc--------CCHHHHHHHHH
Q 012360 313 GIKPNEATFVSVLAACRH--S---GLITEGCQLFRRMGGVYRVQPT-IEHFVCLVDLLSRA--------GLLYQAEEFIK 378 (465)
Q Consensus 313 g~~p~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 378 (465)
+.+.+...|...+++... . ++...|..+|+++.+. .|+ ...+..+..++... ++...+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345677888888877543 2 3477899999999953 564 45555544444332 12334444444
Q ss_pred hCCC----CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcC
Q 012360 379 IMPA----EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 379 ~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 451 (465)
.... ..++..|..+.-.....|++++|...++++++++|. ...|..++.++...|+.++|.+.+++....+.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4322 224566777777777789999999999999999994 67799999999999999999999998765543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0013 Score=52.74 Aligned_cols=97 Identities=18% Similarity=0.190 Sum_probs=74.8
Q ss_pred HHHHHHh--hcCChHHHHHHHHHHHH-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccch------------
Q 012360 171 REVFDEI--VDKDIVLWRSMMHGCVK-----AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS------------ 231 (465)
Q Consensus 171 ~~~~~~~--~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------ 231 (465)
...|+.. ..++..+|..++..|.+ .|+.+=....+..|.+-|+.-|..+|+.|+..+-+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445544 45677777777777764 4677777888888888888889999999888876532
Q ss_pred ----hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 012360 232 ----NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267 (465)
Q Consensus 232 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 267 (465)
+.+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 356788999999999999999999999988876554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0024 Score=58.04 Aligned_cols=120 Identities=14% Similarity=0.032 Sum_probs=81.0
Q ss_pred CCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhh
Q 012360 212 GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN--NITQDAFVKTALIDMYSKCGSLEEALVTFYKTD----CKDVVT 285 (465)
Q Consensus 212 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~ 285 (465)
+.+.+...+..++..+....+++.+..++...... ....-..+..++++.|...|..+.++.++..=. -||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556666777777777777777777777776654 222233445577777777777777777776533 367777
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 012360 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331 (465)
Q Consensus 286 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 331 (465)
++.|+..+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777788888888877777777666666666666666555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.61 E-value=5.4e-05 Score=49.89 Aligned_cols=50 Identities=18% Similarity=0.166 Sum_probs=23.0
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012360 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (465)
..|++++|++.|+++... .+.+...+..++.+|.+.|++++|.++++.+.
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555555555555431 12244444445555555555555555554443
|
... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00018 Score=42.29 Aligned_cols=42 Identities=19% Similarity=0.242 Sum_probs=37.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 012360 387 ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSN 428 (465)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 428 (465)
.+|..+...|...|++++|+++|+++++..|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467889999999999999999999999999999998887764
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.02 Score=51.05 Aligned_cols=165 Identities=13% Similarity=0.141 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCC-------ChhhHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 012360 254 VKTALIDMYSKCGSLEEALVTFYKTDCK-------DVVTWTTMIEGLAN---YGLGNEALRVFYQMERKGIKPNEATFVS 323 (465)
Q Consensus 254 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 323 (465)
+...++-+|....+++...++++.+... ....-.....++.+ .|+.++|..++..+....-.+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3445555677777777777777766643 11222234455556 7888999999888666656778888888
Q ss_pred HHHHHHh---------cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHH----HHHHH---Hh-CCC----
Q 012360 324 VLAACRH---------SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ----AEEFI---KI-MPA---- 382 (465)
Q Consensus 324 l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~---~~-~~~---- 382 (465)
+.+.|-. ....++|+..|.+.-+. .|+...--.++..+...|...+ ..++- .. +..
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~---~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI---EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC---CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 7776632 22477888888887743 4554443344444555554222 22222 11 111
Q ss_pred --CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 383 --EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 383 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
..+-..+.+++.+..-.|++++|.+.+++|.+..|+...
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 123344577888889999999999999999999876643
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.05 Score=47.65 Aligned_cols=96 Identities=10% Similarity=0.111 Sum_probs=56.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcCC-CCCCC--hhh
Q 012360 286 WTTMIEGLANYGLGNEALRVFYQMERKGIK-----PNEA-TFVSVLAACRHSGLITEGCQLFRRMGGVY-RVQPT--IEH 356 (465)
Q Consensus 286 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-----p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~ 356 (465)
+..+...+.+.|++++|.++|++....-.. .+.. .|...+-++...||+..|...+++..... ++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 444666777888888888888887664322 1221 23344456667788888888888876431 22222 334
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHhCC
Q 012360 357 FVCLVDLLSR--AGLLYQAEEFIKIMP 381 (465)
Q Consensus 357 ~~~l~~~~~~--~g~~~~A~~~~~~~~ 381 (465)
...|+.++-. ...+..|..-|+.+.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 4556666644 234666666666665
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0011 Score=56.65 Aligned_cols=100 Identities=11% Similarity=0.020 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC----ccchH
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT----IEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED----KFISY 389 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~ 389 (465)
..|...+....+.|++++|+..|+.+.+.+ |+ ...+..+..+|...|++++|...|+.+.. .| ....+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 345555554556688888888888887542 33 24566777777888888888887777643 12 23445
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 390 KALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 390 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
..++..+...|++++|..+|+++++..|++..
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 55566666778888888888888877777654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.53 E-value=8e-05 Score=40.76 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=30.8
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHhhcCChHHHH
Q 012360 408 VANNMMKLGNQSHEAYVLLSNFYALEGHWTEVA 440 (465)
Q Consensus 408 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 440 (465)
+|+++++++|+++.+|..|+.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378899999999999999999999999999986
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.056 Score=47.79 Aligned_cols=107 Identities=16% Similarity=0.093 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 012360 256 TALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLIT 335 (465)
Q Consensus 256 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~ 335 (465)
+..+.-+...|+...|.++-.+..-|+-..|-..+.+++..++|++-..+... +-++..|..++.+|.+.|+..
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33444455556666666666666556666666666666666666655544321 112355666666666666666
Q ss_pred HHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 012360 336 EGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379 (465)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 379 (465)
+|..++.++. +..-+..|.++|++.+|.+.--+
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666555521 12334555666666666554433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0013 Score=57.77 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=81.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 012360 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431 (465)
Q Consensus 354 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 431 (465)
..++..|..++.+.+++..|++..+.... ++|....-.-..++...|+++.|+..|++++++.|.|-.+-..|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34677888999999999999999988755 5578888888899999999999999999999999999998888888888
Q ss_pred hcCChHHH-HHHHHHHHH
Q 012360 432 LEGHWTEV-AEARRNMKE 448 (465)
Q Consensus 432 ~~g~~~~a-~~~~~~~~~ 448 (465)
+...+.+. .++|..|-.
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 77776664 778888854
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0014 Score=52.67 Aligned_cols=97 Identities=12% Similarity=0.143 Sum_probs=72.5
Q ss_pred HHHhccC--CCCCcccHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcc--------------
Q 012360 38 RVLFDKM--PFRDVGSWNTLMSIYND-----FSDSGEVLILFKQLIFEGIVADKITLVILFSACAR-------------- 96 (465)
Q Consensus 38 ~~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-------------- 96 (465)
...|+.. ...+..+|..+++.+.+ .|..+-....+..|.+.|+.-|..+|+.|++.+=+
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 45677788888888765 46777778888999999999999999999988754
Q ss_pred --hhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCC
Q 012360 97 --LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134 (465)
Q Consensus 97 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 134 (465)
-.+.+-|.+++++|...|+-||..++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 13455677777888877877888877777777755543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.045 Score=51.74 Aligned_cols=155 Identities=15% Similarity=0.147 Sum_probs=75.6
Q ss_pred CChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCchhhHHHHHHHhcchhhhhhhhHHHHHH
Q 012360 32 ALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFE-GIVADKITLVILFSACARLEKLHYGKTVHCYA 110 (465)
Q Consensus 32 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 110 (465)
|++++|.+++-.+.++|. .|..+.+.|++-...++++.--.. +-..-...|+.+...++....++.|.+.+..-
T Consensus 748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555555544444432 234444455555444444321000 00001124555555555555555555555432
Q ss_pred HHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHH
Q 012360 111 TKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMH 190 (465)
Q Consensus 111 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 190 (465)
... ...+.++.+..++++-+.+-..+ +.+....-.+..++...|.-++|.+.|-+...|. ..+.
T Consensus 823 ~~~---------e~~~ecly~le~f~~LE~la~~L--pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~ 886 (1189)
T KOG2041|consen 823 GDT---------ENQIECLYRLELFGELEVLARTL--PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVH 886 (1189)
T ss_pred cch---------HhHHHHHHHHHhhhhHHHHHHhc--CcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHH
Confidence 211 23455555555555544444443 3455555666677777777777776665554432 2344
Q ss_pred HHHHcCChhHHHHHHHH
Q 012360 191 GCVKAKQPEEALELFKK 207 (465)
Q Consensus 191 ~~~~~g~~~~a~~~~~~ 207 (465)
.|...++|.+|.++-+.
T Consensus 887 tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 887 TCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 55666666666665543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.064 Score=48.12 Aligned_cols=134 Identities=9% Similarity=0.047 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhH-HHHH
Q 012360 284 VTWTTMIEGLANYGLGNEALRVFYQMERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF-VCLV 361 (465)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~ 361 (465)
..|...+..-.+..-.+.|..+|.+..+.| +.++...+++++.-++ .|+..-|..+|+--... .||...| ...+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHH
Confidence 456677777777888899999999999988 5677788888887665 48889999999987753 2444333 4566
Q ss_pred HHHHhcCCHHHHHHHHHhCCC----CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 362 DLLSRAGLLYQAEEFIKIMPA----EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 362 ~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.-+.+.++-..|..+|+.... ..-...|..++.--..-|+...+..+=+++.+.-|....
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~ 537 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENL 537 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhH
Confidence 677889999999999985432 223567889998888899999999988888888876543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.011 Score=48.87 Aligned_cols=130 Identities=12% Similarity=0.048 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChh-----HHHH
Q 012360 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF-----VKTA 257 (465)
Q Consensus 183 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~ 257 (465)
.+.+.++..+.-.|.+.-....+++..+...+.+......+.+...+.||.+.|..+++...+..-..+.. +...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34556666677777777778888888776666667777777777778888888888888776543233322 2233
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012360 258 LIDMYSKCGSLEEALVTFYKTDCK---DVVTWTTMIEGLANYGLGNEALRVFYQMERK 312 (465)
Q Consensus 258 l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 312 (465)
....|.-.+++..|...+.++... |+...|.-.-+..-.|+..+|.+.++.|...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334455566777777777666533 3444444444445567777777777777766
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0048 Score=45.42 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=62.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHHHH
Q 012360 289 MIEGLANYGLGNEALRVFYQMERKGIKPN--EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP-TIEHFVCLVDLLS 365 (465)
Q Consensus 289 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 365 (465)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45566778888888888888888876654 23566677888888888888888888875421101 2222233445677
Q ss_pred hcCCHHHHHHHHHhC
Q 012360 366 RAGLLYQAEEFIKIM 380 (465)
Q Consensus 366 ~~g~~~~A~~~~~~~ 380 (465)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 788888888776543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.074 Score=47.78 Aligned_cols=128 Identities=9% Similarity=0.075 Sum_probs=70.3
Q ss_pred ccchhHHHHHhccCCcc------hhhhHHHHHHHccCChHHHHHHhccCCCC-CcccHHHHHHHH--HhcCChhHHHHHH
Q 012360 2 GKGLHAHVTKTALDSDI------YVGNSLIHFYGRMALFTDARVLFDKMPFR-DVGSWNTLMSIY--NDFSDSGEVLILF 72 (465)
Q Consensus 2 ~~~~~~~~~~~g~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~--~~~~~~~~a~~~~ 72 (465)
|.++|..+.+.. ..++ ..-+.++++|-.. +.+.....+....+. ....|-.+..++ .+.+.+.+|++.+
T Consensus 25 sEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~l 102 (549)
T PF07079_consen 25 SEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQAL 102 (549)
T ss_pred HHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHH
Confidence 455666665543 2222 2334666666643 344444333333211 234455555443 4678888888887
Q ss_pred HHHHHc--CCCC------------chhhHHHHHHHhcchhhhhhhhHHHHHHHHhC----CccchhhHHHHHHHHHh
Q 012360 73 KQLIFE--GIVA------------DKITLVILFSACARLEKLHYGKTVHCYATKVG----LEYMLNMENALLLMYAK 131 (465)
Q Consensus 73 ~~m~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~ 131 (465)
..-... +-.| |-..=+..+..+...|++.+++.+++++...= ...+..+|+.++-.+++
T Consensus 103 s~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 103 SVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 766543 2111 11112334556677888888888888777643 33777788876655544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00053 Score=59.94 Aligned_cols=130 Identities=11% Similarity=-0.022 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHh---hcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC------CC--cc
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRM---GGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA------ED--KF 386 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~--~~ 386 (465)
..|..|.+.|.-.|+++.|+...+.- .+.+|-.. ....+..|.+++.-.|+++.|.+.|+.... +. ..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 35666666667778888887765532 22223222 345677788888889999999888875321 11 34
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHH----hC--CCCchhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 387 ISYKALLSACITYSEFDLGKKVANNMMK----LG--NQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
.+..+|...|.-..++++|+.++.+-+. ++ .-....++.|+.++...|..++|+.+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4566778888888888999888777554 22 22344688899999999999999888876554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.035 Score=49.12 Aligned_cols=85 Identities=11% Similarity=-0.024 Sum_probs=42.0
Q ss_pred HHHcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHhcC
Q 012360 293 LANYGLGNEALRVFYQMERK---GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT-IEHFVCLVDLLSRAG 368 (465)
Q Consensus 293 ~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 368 (465)
..+.|++..|.+.+.+.+.. +..|+...|.....+..+.|+..+|+.-.+.... +.+. ...+..-..++...+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHH
Confidence 34556666666666665543 1223334444444555556666666666655552 1221 222222333444455
Q ss_pred CHHHHHHHHHhC
Q 012360 369 LLYQAEEFIKIM 380 (465)
Q Consensus 369 ~~~~A~~~~~~~ 380 (465)
++++|.+-++..
T Consensus 336 ~~e~AV~d~~~a 347 (486)
T KOG0550|consen 336 KWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHH
Confidence 566666555543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00058 Score=45.66 Aligned_cols=63 Identities=6% Similarity=0.015 Sum_probs=52.0
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhH
Q 012360 361 VDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423 (465)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 423 (465)
...|.+.+++++|.++++.+.. .| ++..|.....++...|++++|.+.++++++..|+++...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 3567888999999999888755 33 677788888899999999999999999999999887643
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.12 Score=49.56 Aligned_cols=351 Identities=12% Similarity=0.075 Sum_probs=189.8
Q ss_pred HhcCChhHHHHHHHHH--------HHcCCCCchhhHHH-----HHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHH
Q 012360 60 NDFSDSGEVLILFKQL--------IFEGIVADKITLVI-----LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126 (465)
Q Consensus 60 ~~~~~~~~a~~~~~~m--------~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 126 (465)
.+..++++-..+-+.+ .+-|++.+..-|.. ++.-+...+.+..|.++-..+...-... ..++....
T Consensus 400 l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa 478 (829)
T KOG2280|consen 400 LRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWA 478 (829)
T ss_pred cccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHH
Confidence 3444555544444333 23455555544443 4455555666777777665553221111 45566666
Q ss_pred HHHHhCCC---hHHHHHHHHhhCC-CCCchhHHHHHHHHHhcCChHHHHHHHHHhhcC--------ChHHHHHHHHHHHH
Q 012360 127 LMYAKCKE---MDEALRLFDEMGS-RRNIVSLNILINGYIDMELVDLAREVFDEIVDK--------DIVLWRSMMHGCVK 194 (465)
Q Consensus 127 ~~~~~~g~---~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~ 194 (465)
.-+.+..+ -+-+..+=++++. ..+..+|..+.+-....|+.+-|..+++.-+.. +..-+...+.-..+
T Consensus 479 ~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaie 558 (829)
T KOG2280|consen 479 RRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIE 558 (829)
T ss_pred HHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHh
Confidence 66665532 2223333344432 234556777777777888888888777644322 22233444455566
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 012360 195 AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274 (465)
Q Consensus 195 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 274 (465)
.|+.+....++-.+.+. .+...|...+ .+...|..+|.+..+..-.. .+-..|-. ++...+...
T Consensus 559 s~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p~a~~lY~~~~r~~~~~------~l~d~y~q-~dn~~~~a~ 622 (829)
T KOG2280|consen 559 SGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQPLALSLYRQFMRHQDRA------TLYDFYNQ-DDNHQALAS 622 (829)
T ss_pred cCCchhHHHHHHHHHHH---HHHHHHHHHH------HhchhhhHHHHHHHHhhchh------hhhhhhhc-ccchhhhhh
Confidence 66666666666555442 1111121111 22334445555443321110 11112222 222222222
Q ss_pred Hh-cC------CCCChhhHHHHHHHHHHcCCh----------HHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHH
Q 012360 275 FY-KT------DCKDVVTWTTMIEGLANYGLG----------NEALRVFYQMER-KGIKPNEATFVSVLAACRHSGLITE 336 (465)
Q Consensus 275 ~~-~~------~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~~~~~~ 336 (465)
|. +. .++-..........+.+.... .+-+.+.+.+.. .|......+.+--+.-+...|+..+
T Consensus 623 ~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~ 702 (829)
T KOG2280|consen 623 FHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKR 702 (829)
T ss_pred hhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHH
Confidence 11 00 011112222233334333321 111222222222 2333344455666666777899999
Q ss_pred HHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 337 GCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
|.++-.+.+ -|+...|-.-+.++...+++++-+++-+... .+.-|...+.+|.+.|+.++|.+++.+.-.
T Consensus 703 a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-- 772 (829)
T KOG2280|consen 703 AEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-- 772 (829)
T ss_pred HHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--
Confidence 998888776 3888888888899999999998887776665 367788999999999999999988876422
Q ss_pred CCCchhHHHHHHHHhhcCChHHHHHHH
Q 012360 417 NQSHEAYVLLSNFYALEGHWTEVAEAR 443 (465)
Q Consensus 417 p~~~~~~~~l~~~~~~~g~~~~a~~~~ 443 (465)
+.-...+|.+.|++.+|.+.-
T Consensus 773 ------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 773 ------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred ------hHHHHHHHHHhccHHHHHHHH
Confidence 226788899999999887654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00061 Score=61.19 Aligned_cols=97 Identities=14% Similarity=-0.027 Sum_probs=57.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCcc----chHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 012360 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDKF----ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLS 427 (465)
Q Consensus 353 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 427 (465)
+...++.+..+|...|++++|...|++... +|+. .+|..+..+|...|+.++|+..++++++..+.. |..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~---f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLK---FSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchh---HHHHH
Confidence 456677777777777777777777776433 4543 247777777777777777777777777763221 22111
Q ss_pred H--HHhhcCChHHHHHHHHHHHHhcCC
Q 012360 428 N--FYALEGHWTEVAEARRNMKELQTR 452 (465)
Q Consensus 428 ~--~~~~~g~~~~a~~~~~~~~~~~~~ 452 (465)
. .+....+.++..++++.+.+.|..
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1 111223344556666666665553
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0014 Score=55.98 Aligned_cols=94 Identities=12% Similarity=0.141 Sum_probs=44.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-ChhhHHHH
Q 012360 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKPNE----ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP-TIEHFVCL 360 (465)
Q Consensus 286 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 360 (465)
|...+..+.+.|++++|...|+.+.+. .|+. ..+..+..+|...|++++|...|+.+.+.+...| ....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 333333334445555555555555554 3332 2444555555555555555555555553211111 12333334
Q ss_pred HHHHHhcCCHHHHHHHHHhCC
Q 012360 361 VDLLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~ 381 (465)
...+...|+.++|.++|+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 444555555555555555443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0079 Score=50.99 Aligned_cols=110 Identities=11% Similarity=0.055 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHhCCC--CCccchH
Q 012360 315 KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG---LLYQAEEFIKIMPA--EDKFISY 389 (465)
Q Consensus 315 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~--~~~~~~~ 389 (465)
+-|...|..|..+|...|+.+.|...|.+..+- .++++..+..+..++.... ...++..+|+++.. +.|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 446789999999999999999999999999853 3456667777777665543 35678889998765 3377778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 012360 390 KALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLS 427 (465)
Q Consensus 390 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 427 (465)
..|...+...|++.+|...|+.|++..|.+.. +..++
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~-rr~~i 267 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP-RRSLI 267 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc-hHHHH
Confidence 88888999999999999999999999977665 44444
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.046 Score=42.78 Aligned_cols=124 Identities=11% Similarity=0.103 Sum_probs=72.7
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHH
Q 012360 249 TQDAFVKTALIDMYSKCGSLEEALVTFYKTDC----KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN---EATF 321 (465)
Q Consensus 249 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~ 321 (465)
.|+..--..|..+....|+..+|...|++... .|....-.+..+....+++..|...++++.+.. |. +.+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 34555555566666666666666666655432 355555556666666677777777777666542 21 2334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 012360 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFI 377 (465)
Q Consensus 322 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 377 (465)
..+.+.+...|.+.+|+..|+.... .-|+...-......+.+.|+.++|..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 4455666677777777777777763 2455444444455566666666555443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.033 Score=52.11 Aligned_cols=91 Identities=15% Similarity=0.072 Sum_probs=48.4
Q ss_pred HHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHH
Q 012360 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALEL 204 (465)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 204 (465)
....+...|+.++|..+.-+ .|-.+-+.++-+++...+..+...+...+.+...+..|-++
T Consensus 709 AAEmLiSaGe~~KAi~i~~d-------------------~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeI 769 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICGD-------------------HGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEI 769 (1081)
T ss_pred HHHHhhcccchhhhhhhhhc-------------------ccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHH
Confidence 34555666777766665332 33334444444444444444555555555555566666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHH
Q 012360 205 FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFI 243 (465)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 243 (465)
|.+|-+ ...++......+++++|..+-+..
T Consensus 770 F~k~gD---------~ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 770 FLKMGD---------LKSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred HHHhcc---------HHHHhhheeecccchHhHhhhhhC
Confidence 665533 223445556666666666655543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.026 Score=46.71 Aligned_cols=137 Identities=9% Similarity=0.004 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC----CCCChhhHHHH
Q 012360 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYR----VQPTIEHFVCL 360 (465)
Q Consensus 285 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l 360 (465)
..+.++..+.-.+.+.-....+.+.++...+.++.....|.+.-.+.|+.+.|...|++..+..+ ..-...+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34456666667788888889999998875555677788888888999999999999997764422 22222233334
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC--CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 361 VDLLSRAGLLYQAEEFIKIMPAE--DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
...|.-++++..|...+.++... .++...|.-.-+..-.|+..+|++.++.+++..|....
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 44566678888888899887653 25555565555556688999999999999998887655
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.057 Score=44.58 Aligned_cols=177 Identities=14% Similarity=0.113 Sum_probs=76.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 012360 189 MHGCVKAKQPEEALELFKKMIDEGVT--PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG 266 (465)
Q Consensus 189 ~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (465)
...+...|++++|.+.|+.+...-.. --....-.+..++.+.|+++.|...++...+.-.......+...+.+.+.-.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 34455666666666666666653111 1122333444555666666666666666555421111111111111111100
Q ss_pred CHHHHHHHHhcCCCCC-------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012360 267 SLEEALVTFYKTDCKD-------VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ 339 (465)
Q Consensus 267 ~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 339 (465)
...... ....| ...+..++.-|-...-..+|...+..+... -...-..+..-|.+.|.+..|..
T Consensus 92 ~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 92 QIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHH
T ss_pred hCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHH
Confidence 000000 00011 112334444444444555555544444322 01111234566777888888888
Q ss_pred HHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHH
Q 012360 340 LFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAE 374 (465)
Q Consensus 340 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 374 (465)
-++.+.+.+.-.+ .......++.+|.+.|..+.|.
T Consensus 163 r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 163 RFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8888776421111 1233456667777777766443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00049 Score=46.74 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=45.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHh----CCC---CchhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 387 ISYKALLSACITYSEFDLGKKVANNMMKL----GNQ---SHEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
.+++.+...|...|++++|+..++++++. +++ ...++..++.++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35677778888888888888888888763 222 234678888888888888888888887653
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.012 Score=48.51 Aligned_cols=50 Identities=8% Similarity=-0.012 Sum_probs=40.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCch---hHHHHHHHHhhcCChHHHHH
Q 012360 392 LLSACITYSEFDLGKKVANNMMKLGNQSHE---AYVLLSNFYALEGHWTEVAE 441 (465)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~ 441 (465)
++..|.+.|.+..|..-++.+++.-|+++. ....++.+|.+.|..+.+..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 567788999999999999999999988766 46778889999998885543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.037 Score=51.81 Aligned_cols=245 Identities=12% Similarity=0.110 Sum_probs=140.1
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHhh-----------cCChHHHHHHHHHHHHcCCh--hHHHHHHHHHHHcCCC
Q 012360 148 RRNIVSLNILINGYIDMELVDLAREVFDEIV-----------DKDIVLWRSMMHGCVKAKQP--EEALELFKKMIDEGVT 214 (465)
Q Consensus 148 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~ 214 (465)
.|....+.+-+-.|...|.+++|.++----+ .-+...++..-.+|.+..+. -+...-++++.++|-.
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 3444455555566677777777765421111 11233445555566665543 3445556777788888
Q ss_pred CCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--------------
Q 012360 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC-------------- 280 (465)
Q Consensus 215 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------- 280 (465)
|+... +...|+-.|++.+|.++|.+- |.. +..++.|.....++.|.+++.....
T Consensus 633 P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WA 700 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWA 700 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh
Confidence 88654 344566788888888888653 221 2234444444445555554433221
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHH------HHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 012360 281 KDVVTWTTMIEGLANYGLGNEALRVFYQ------MERKGIKP---NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ 351 (465)
Q Consensus 281 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~------m~~~g~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 351 (465)
.|+.--.+....+...|+.++|..+.-+ +.+-+-+. +..+...+..-+-+...+..|-++|.++-..
T Consensus 701 r~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---- 776 (1081)
T KOG1538|consen 701 RNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---- 776 (1081)
T ss_pred hhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH----
Confidence 1221222334555666777766654221 22222122 3345555555556677788888888887632
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCccc-----------hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012360 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDKFI-----------SYKALLSACITYSEFDLGKKVANNMMK 414 (465)
Q Consensus 352 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (465)
..+++.....+++++|..+-++.++ .|++. -|...-++|.++|+..+|.++++++..
T Consensus 777 ------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 777 ------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 3567888889999999999888775 33321 233444667777777778777777654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0039 Score=54.78 Aligned_cols=276 Identities=13% Similarity=0.007 Sum_probs=138.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchh----hHHHHHHHhcchhhhhhhhHHHHHHHH----hCCc-cchhhHHHHHH
Q 012360 57 SIYNDFSDSGEVLILFKQLIFEGIVADKI----TLVILFSACARLEKLHYGKTVHCYATK----VGLE-YMLNMENALLL 127 (465)
Q Consensus 57 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~ 127 (465)
.-+++.|+....+.+|+...+.|- -|-. .|+.+.++|.-.+++++|++....=+. .|-+ -.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 347788888888888888887762 2333 455566666677777777776543211 1100 01111122333
Q ss_pred HHHhCCChHHHHHHHHhh-------CCC-CCchhHHHHHHHHHhcCChHHHHHHHHHhhcC-ChHHHHHHHHHHHHcCCh
Q 012360 128 MYAKCKEMDEALRLFDEM-------GSR-RNIVSLNILINGYIDMELVDLAREVFDEIVDK-DIVLWRSMMHGCVKAKQP 198 (465)
Q Consensus 128 ~~~~~g~~~~A~~~~~~~-------~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 198 (465)
.+--.|.+++|.-...+- +.+ ....++..+...|...|+.-.. ..| +...++.=+ ...+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~-------~~pee~g~f~~ev-----~~al 171 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGL-------EAPEEKGAFNAEV-----TSAL 171 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCC-------CChhhcccccHHH-----HHHH
Confidence 444455666655443221 100 1112222233333322211000 000 000000000 0012
Q ss_pred hHHHHHHHHHHH----cCCC-CCHHHHHHHHHHhccchhhHhHHHHHHHHHH----cCCC-CChhHHHHHHHHHHhcCCH
Q 012360 199 EEALELFKKMID----EGVT-PDEEVMVSVLSACSSLSNLQYGRLVHRFILQ----NNIT-QDAFVKTALIDMYSKCGSL 268 (465)
Q Consensus 199 ~~a~~~~~~~~~----~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~ 268 (465)
+.|.++|.+=++ .|-. .-...|..+-..|.-.|+++.|+...+.-+. .|-. .....+..+..+++-.|++
T Consensus 172 ~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~f 251 (639)
T KOG1130|consen 172 ENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNF 251 (639)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhccc
Confidence 233334332111 1100 0123455555566667788888766554322 2321 1234566778888888888
Q ss_pred HHHHHHHhcCC-------CC--ChhhHHHHHHHHHHcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCCH
Q 012360 269 EEALVTFYKTD-------CK--DVVTWTTMIEGLANYGLGNEALRVFYQMER----KG-IKPNEATFVSVLAACRHSGLI 334 (465)
Q Consensus 269 ~~a~~~~~~~~-------~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~g-~~p~~~~~~~l~~~~~~~~~~ 334 (465)
+.|.+.|+... .. ...+.-.|...|.-..++++|+.++.+-.. .+ ..-....+.+|..+|...|..
T Consensus 252 e~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h 331 (639)
T KOG1130|consen 252 ELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEH 331 (639)
T ss_pred HhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhH
Confidence 88888776422 22 233555677777777778888877665321 11 112345777888888888888
Q ss_pred HHHHHHHHHhh
Q 012360 335 TEGCQLFRRMG 345 (465)
Q Consensus 335 ~~a~~~~~~~~ 345 (465)
++|+.+.+...
T Consensus 332 ~kAl~fae~hl 342 (639)
T KOG1130|consen 332 RKALYFAELHL 342 (639)
T ss_pred HHHHHHHHHHH
Confidence 88887777654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.2 Score=44.29 Aligned_cols=244 Identities=14% Similarity=0.057 Sum_probs=104.2
Q ss_pred CCChHHHHHHHHhhCCCCCchhH--HHHHHHHHhcCChHHHHHHHHHhhc--C-ChHHHHHHHHHHHHcCChhHHHHHHH
Q 012360 132 CKEMDEALRLFDEMGSRRNIVSL--NILINGYIDMELVDLAREVFDEIVD--K-DIVLWRSMMHGCVKAKQPEEALELFK 206 (465)
Q Consensus 132 ~g~~~~A~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 206 (465)
.|+++.|.+-|+.|-..|..... ..|.-...+.|..+.|...-+..-. | -...+...+...+..|+|+.|+++++
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd 212 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVD 212 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHH
Confidence 45566666666655223322211 1111222244555555555444422 1 22445555555666666666666665
Q ss_pred HHHHcC-CCCCHH--HHHHHHHHh---ccchhhHhHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHhcCC
Q 012360 207 KMIDEG-VTPDEE--VMVSVLSAC---SSLSNLQYGRLVHRFILQNNITQDAF-VKTALIDMYSKCGSLEEALVTFYKTD 279 (465)
Q Consensus 207 ~~~~~~-~~~~~~--~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~ 279 (465)
.-.... +.++.. .-..|+.+- .-..+...|...-.+..+. .|+.. .-..-..++.+.|+..++-.+++.+=
T Consensus 213 ~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 213 AQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 444321 222221 111122111 1112233344333333332 22221 11223345555666666665555543
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhH
Q 012360 280 CKDVVTWTTMIEGLANYGLGNEALRVFYQMERK-GIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357 (465)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 357 (465)
+..++.- +...|.+..--+.+..-+++..+. .++|| ..+...+..+-...|++..|..--+... ...|....|
T Consensus 291 K~ePHP~--ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~ 365 (531)
T COG3898 291 KAEPHPD--IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAY 365 (531)
T ss_pred hcCCChH--HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHH
Confidence 2211111 112222222222233333322211 12443 3444555566666666666666555554 335666666
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHhCCC
Q 012360 358 VCLVDLLSRA-GLLYQAEEFIKIMPA 382 (465)
Q Consensus 358 ~~l~~~~~~~-g~~~~A~~~~~~~~~ 382 (465)
..|.+.-... |+-.++..++.+...
T Consensus 366 lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 366 LLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHhhccCchHHHHHHHHHHhc
Confidence 5555544433 666666666655443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.055 Score=41.82 Aligned_cols=94 Identities=6% Similarity=-0.030 Sum_probs=71.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCccchHHHHHHHHHhcCC
Q 012360 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM--PAEDKFISYKALLSACITYSE 401 (465)
Q Consensus 324 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 401 (465)
..--+...|++++|..+|+-+..- -+-+...+..|..++-..+++++|...|... ....|+...-....++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 344456789999999999988742 1335667788888888999999999988753 334566666678889999999
Q ss_pred hHHHHHHHHHHHHhCCCCc
Q 012360 402 FDLGKKVANNMMKLGNQSH 420 (465)
Q Consensus 402 ~~~a~~~~~~~~~~~p~~~ 420 (465)
.+.|+..|+.+++ .|.+.
T Consensus 121 ~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 121 AAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHHHHHHHh-CcchH
Confidence 9999999998888 34443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.23 Score=43.94 Aligned_cols=243 Identities=16% Similarity=0.172 Sum_probs=142.2
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 012360 193 VKAKQPEEALELFKKMIDEGVTPDEEV--MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEE 270 (465)
Q Consensus 193 ~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (465)
.-.|+++.|.+-|+.|.. .|.... ...|.-..-+.|+.+.|..+-+..-..- +.-.......+...+..|+++.
T Consensus 131 l~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHH
Confidence 345777777777777765 122111 1122222345666666666666655443 2224556667777777777777
Q ss_pred HHHHHhcCC-----CCChh--hHHHHHHHHH---HcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 012360 271 ALVTFYKTD-----CKDVV--TWTTMIEGLA---NYGLGNEALRVFYQMERKGIKPNEA-TFVSVLAACRHSGLITEGCQ 339 (465)
Q Consensus 271 a~~~~~~~~-----~~~~~--~~~~l~~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~ 339 (465)
|+++++.-. ++++. .-..|+.+-. -.-+...|...-.+..+. .|+.. .-..-..++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhh
Confidence 777775432 33332 1122222211 123455555555554443 66643 33344578888899999999
Q ss_pred HHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHH----HHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 012360 340 LFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE----EFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKL 415 (465)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 415 (465)
+++.+-+. .|.+..+...+ +.+.|+..... +-+..|+ +.+..+...+..+....|++..|..--+.+...
T Consensus 285 ilE~aWK~---ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 285 ILETAWKA---EPHPDIALLYV--RARSGDTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHHhc---CCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 99988743 45554443332 34555532221 1233343 345666777778888889998888888887777
Q ss_pred CCCCchhHHHHHHHHhhc-CChHHHHHHHHHHHH
Q 012360 416 GNQSHEAYVLLSNFYALE-GHWTEVAEARRNMKE 448 (465)
Q Consensus 416 ~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 448 (465)
.|.... |..|.+.-... |+-.+++..+-+..+
T Consensus 359 ~pres~-~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 359 APRESA-YLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred CchhhH-HHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 777654 77777776655 888888887775543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.021 Score=43.00 Aligned_cols=88 Identities=9% Similarity=0.051 Sum_probs=55.1
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC-C----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch---hHHHHHHHHhh
Q 012360 361 VDLLSRAGLLYQAEEFIKIMPAE-D----KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE---AYVLLSNFYAL 432 (465)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~ 432 (465)
.....+.|++++|.+.|+.+... | ....-..++.+|.+.+++++|...+++.+++.|.++. ++...+.++.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34455667777777777766541 1 2334556777888888888888888888888877665 33344444444
Q ss_pred cCC---------------hHHHHHHHHHHHH
Q 012360 433 EGH---------------WTEVAEARRNMKE 448 (465)
Q Consensus 433 ~g~---------------~~~a~~~~~~~~~ 448 (465)
+.. ...|..-|+++.+
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 433 4456666665544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.085 Score=43.31 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=22.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhC----CCCchhHHHHHHHHhhcCChHHHHH
Q 012360 393 LSACITYSEFDLGKKVANNMMKLG----NQSHEAYVLLSNFYALEGHWTEVAE 441 (465)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~a~~ 441 (465)
|-.+....|+..|..+++...+.+ |.+..+...|+.+| ..|+.+++..
T Consensus 197 ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 197 ILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 333444445555555555544422 44444455555554 3444444443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.37 Score=45.17 Aligned_cols=382 Identities=10% Similarity=0.086 Sum_probs=223.1
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhH-HHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHH
Q 012360 48 DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITL-VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALL 126 (465)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 126 (465)
+...|..++.---.....+.+..++..+... -|-.+-| ......=.+.|..+.+.++|++.+.. ++.+...|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 4556777776544555556677777777654 4555533 33333335678888888888887764 566666666555
Q ss_pred HHHH-hCCChHHHHHHHHhh----CCC-CCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHH---c--
Q 012360 127 LMYA-KCKEMDEALRLFDEM----GSR-RNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVK---A-- 195 (465)
Q Consensus 127 ~~~~-~~g~~~~A~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~---~-- 195 (465)
..+. ..|+.+.....|+.. |.. .....|...|..-...+++.....+++++.+-....++..-..|.+ .
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~ 200 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNE 200 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCC
Confidence 4443 457777777777776 322 2455677777777788888888888888866544444433333322 1
Q ss_pred ----CChhHHHHHHHHHHH-------------------cCCCCC-HH--HHHHHHHHh-------ccchhhHhHHHHHHH
Q 012360 196 ----KQPEEALELFKKMID-------------------EGVTPD-EE--VMVSVLSAC-------SSLSNLQYGRLVHRF 242 (465)
Q Consensus 196 ----g~~~~a~~~~~~~~~-------------------~~~~~~-~~--~~~~ll~~~-------~~~~~~~~a~~~~~~ 242 (465)
...+++.++-..... .-..|. .. ..+.+-..+ -...........++.
T Consensus 201 ~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~ 280 (577)
T KOG1258|consen 201 EKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEE 280 (577)
T ss_pred hhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhh
Confidence 122222222221111 000111 00 011111111 111111222222222
Q ss_pred HHHc---CC----CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012360 243 ILQN---NI----TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKD---VVTWTTMIEGLANYGLGNEALRVFYQMERK 312 (465)
Q Consensus 243 ~~~~---~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 312 (465)
-... .+ +++...|...+..-...|+.+.+.-+|+...-|- ...|-..+......|+.+-|..++....+-
T Consensus 281 ~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i 360 (577)
T KOG1258|consen 281 GIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKI 360 (577)
T ss_pred hccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh
Confidence 2221 11 2334577888888889999999999998876542 234555555555558888888887776554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHhcCCHHHHH---HHHHhCCC-CCccc
Q 012360 313 GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT-IEHFVCLVDLLSRAGLLYQAE---EFIKIMPA-EDKFI 387 (465)
Q Consensus 313 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~-~~~~~ 387 (465)
-++-.+.+-..-...+-..|+++.|..+++.+.++ . |+ ...-..-+....+.|..+.+. +++..... ..+..
T Consensus 361 ~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~ 437 (577)
T KOG1258|consen 361 HVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNG 437 (577)
T ss_pred cCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcc
Confidence 33323322222222334578999999999999975 3 44 333334455667888888888 55544432 22333
Q ss_pred hHHHHHH-----HHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCC
Q 012360 388 SYKALLS-----ACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435 (465)
Q Consensus 388 ~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 435 (465)
....+.- .+.-.++.+.|..++.++.+..|++...|..++......+.
T Consensus 438 i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 438 ILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 3332222 23346789999999999999999999999999988877763
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0015 Score=44.25 Aligned_cols=60 Identities=7% Similarity=0.102 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCC--------CCc-cchHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 012360 356 HFVCLVDLLSRAGLLYQAEEFIKIMPA--------EDK-FISYKALLSACITYSEFDLGKKVANNMMKL 415 (465)
Q Consensus 356 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 415 (465)
+++.+...|...|++++|++.|++... .++ ..++..+..++...|++++|++.++++.++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444555555555555554443321 111 345666777777777777777777776653
|
... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0051 Score=54.19 Aligned_cols=64 Identities=11% Similarity=0.133 Sum_probs=59.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 387 ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
.++..+..++.+.+++..|++..++.++.+|+|....+.-+.+|...|+++.|+..|+++.+..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 4678888999999999999999999999999999999999999999999999999999987653
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.016 Score=43.15 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHH
Q 012360 313 GIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365 (465)
Q Consensus 313 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 365 (465)
...|+..+..+++.+|+..|++..|+++++...+.++++.+..+|..|++=..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45688888899999999999999999999999888888778888888776443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.08 Score=47.34 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=27.0
Q ss_pred ChHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 012360 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDE 211 (465)
Q Consensus 181 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 211 (465)
+-..+..++.+.+-.|+.++|.+.+++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 5567788889999999999999999999875
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.12 Score=48.71 Aligned_cols=116 Identities=18% Similarity=0.145 Sum_probs=76.9
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHhCCCCC------ccchHHHHHHHHHhcCChH
Q 012360 331 SGLITEGCQLFRRMGGVYRVQPTIEHFV-CLVDLLSRAGLLYQAEEFIKIMPAED------KFISYKALLSACITYSEFD 403 (465)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~ 403 (465)
..+.+.|.++++.+.++ -|+...|. .-.+.+...|++++|.+.|+...... ....+-.++..+.-..+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 34667788888888753 35544443 34455667788888888887654311 2344556677777888888
Q ss_pred HHHHHHHHHHHhCCCCchhHH-HHHHHHhhcCCh-------HHHHHHHHHHHHh
Q 012360 404 LGKKVANNMMKLGNQSHEAYV-LLSNFYALEGHW-------TEVAEARRNMKEL 449 (465)
Q Consensus 404 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~a~~~~~~~~~~ 449 (465)
+|.+.+.++.+.+.-+...|. ..+.++...|+. ++|.+++++....
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 888888888887766555444 345556667777 7788888776543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.015 Score=48.69 Aligned_cols=101 Identities=15% Similarity=0.013 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CC-ccchHHHHH
Q 012360 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ-PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA----ED-KFISYKALL 393 (465)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~~l~ 393 (465)
.|+.-+.. .+.|++..|...|....+.+.-. .....+..|.+++...|++++|..+|..+.. .| -+..+.-|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45444443 45566777777777777532111 1233445577777777777777777665432 12 345566677
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 394 SACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.+..+.|+.++|...|+++.+..|..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 7777778888888888888887777665
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.017 Score=42.11 Aligned_cols=86 Identities=20% Similarity=0.175 Sum_probs=39.1
Q ss_pred HHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhC-CCCch---hHHHHHHHHhhcCChH
Q 012360 364 LSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLG-NQSHE---AYVLLSNFYALEGHWT 437 (465)
Q Consensus 364 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~---~~~~l~~~~~~~g~~~ 437 (465)
+...|+.+.|++.|..... +.....||.-..++.-.|+.++|+.-+++++++. |...+ .|..-+..|...|+-+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 3344455555554443321 2234445555555555555555555555555533 22211 2334444455555555
Q ss_pred HHHHHHHHHHHh
Q 012360 438 EVAEARRNMKEL 449 (465)
Q Consensus 438 ~a~~~~~~~~~~ 449 (465)
.|+.-|+...+.
T Consensus 133 ~AR~DFe~AA~L 144 (175)
T KOG4555|consen 133 AARADFEAAAQL 144 (175)
T ss_pred HHHHhHHHHHHh
Confidence 555555444433
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.016 Score=52.50 Aligned_cols=96 Identities=9% Similarity=0.055 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHH
Q 012360 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI----EHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKAL 392 (465)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 392 (465)
+...++.+..+|.+.|++++|+..|++..+ +.|+. ..|..+..+|...|+.++|.+.+++..... ...|..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~~f~~i 149 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NLKFSTI 149 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-chhHHHH
Confidence 457888899999999999999999999884 35653 358889999999999999999998876431 1122211
Q ss_pred HH--HHHhcCChHHHHHHHHHHHHhC
Q 012360 393 LS--ACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 393 ~~--~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
.. .+....+.++..++++.+.+.+
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G 175 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGG 175 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhC
Confidence 11 0112233446666777777666
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.11 Score=40.16 Aligned_cols=71 Identities=17% Similarity=0.120 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHH-----cCCCCChhHH
Q 012360 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ-----NNITQDAFVK 255 (465)
Q Consensus 184 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 255 (465)
+...++..+...|+++.|..+.+.+.... +.+...+..+|.++...|+...|...|+.+.. .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 44455566666777777777777776652 33566677777777777777777777666543 3666665543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.016 Score=48.48 Aligned_cols=93 Identities=13% Similarity=0.100 Sum_probs=74.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCCC-C----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC---CchhHHHHH
Q 012360 356 HFVCLVDLLSRAGLLYQAEEFIKIMPAE-D----KFISYKALLSACITYSEFDLGKKVANNMMKLGNQ---SHEAYVLLS 427 (465)
Q Consensus 356 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~ 427 (465)
.|+.-+. +.+.|++..|...|.....+ | .+..+-=|+.++...|++++|..+|..+.+..|. .+..+..|+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4665554 55678899999999876542 2 2223344889999999999999999999996655 456799999
Q ss_pred HHHhhcCChHHHHHHHHHHHHh
Q 012360 428 NFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 428 ~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
....+.|+.++|...|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 9999999999999999998765
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.046 Score=49.70 Aligned_cols=142 Identities=6% Similarity=0.026 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHhc---------CCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhc
Q 012360 299 GNEALRVFYQMER-KGIKPNE-ATFVSVLAACRHS---------GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA 367 (465)
Q Consensus 299 ~~~a~~~~~~m~~-~g~~p~~-~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 367 (465)
.+.|..+|.+... ....|+. ..|..+..++... .+..+|.+.-++..+. -+-|+.....+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhh
Confidence 4567778887772 2235553 5666666554332 2345566666666642 234666666677767777
Q ss_pred CCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHhhcCChHHHHHHH
Q 012360 368 GLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA--YVLLSNFYALEGHWTEVAEAR 443 (465)
Q Consensus 368 g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~a~~~~ 443 (465)
++++.|..+|++... +| ...+|......+.-.|+.++|.+.++++++++|....+ ....++.|...+ .++|.+++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 778888888887654 44 44556666666667888888888888888888765442 223333555554 45555544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.13 Score=44.35 Aligned_cols=150 Identities=10% Similarity=-0.026 Sum_probs=90.3
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHH----HHHHHHHhcCCH
Q 012360 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----CLVDLLSRAGLL 370 (465)
Q Consensus 295 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~ 370 (465)
..|+..+|-..++++.+. .+.|...+...=.+|...|+...-...++++.. ...++...|. .+..++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 346667777777777765 233445555566777777777777777777765 3344443333 344555677778
Q ss_pred HHHHHHHHhCCCCC--ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCC----CCchhHHHHHHHHhhcCChHHHHHHHH
Q 012360 371 YQAEEFIKIMPAED--KFISYKALLSACITYSEFDLGKKVANNMMKLGN----QSHEAYVLLSNFYALEGHWTEVAEARR 444 (465)
Q Consensus 371 ~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~ 444 (465)
++|++.-++...-. |...-.++...+--.|+..++.++..+-...-. --..-|...+-.+...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 88887777765422 333444555555567777777776665433111 111235566666777777888877777
Q ss_pred HHH
Q 012360 445 NMK 447 (465)
Q Consensus 445 ~~~ 447 (465)
+=.
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.53 Score=40.20 Aligned_cols=146 Identities=11% Similarity=0.048 Sum_probs=89.2
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHH
Q 012360 292 GLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLY 371 (465)
Q Consensus 292 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 371 (465)
.....|++.+|..+|+...... .-+...-..++.+|...|+.+.|..++..+..+ --.........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCC
Confidence 3456677777777777766652 112345556677777778888887777776542 11111111223345555555555
Q ss_pred HHHHHHHhCCCCC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHhhcCChHHH
Q 012360 372 QAEEFIKIMPAED-KFISYKALLSACITYSEFDLGKKVANNMMKLG--NQSHEAYVLLSNFYALEGHWTEV 439 (465)
Q Consensus 372 ~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a 439 (465)
+...+-.+.-..| |...-..+...+...|+.+.|.+.+-.+++.+ -.+...-..++..+.--|.-+.+
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 5555555555555 55666667777777888888877777776644 45556677777777777755543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.34 E-value=1.1 Score=43.47 Aligned_cols=153 Identities=17% Similarity=0.116 Sum_probs=95.9
Q ss_pred HHHHHHhCCChHHHHHHHHhh-CCCC---CchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhH
Q 012360 125 LLLMYAKCKEMDEALRLFDEM-GSRR---NIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEE 200 (465)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 200 (465)
-++.+.+.+.+++|+..-+.. +..| -...+..+|..+.-.|++++|-...-.|...+..-|...+..+...++...
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 356667778888888888777 4444 234567788888888888888888888888888888888887777777665
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHH------------------HHHHcCCCCChhHHHHHHHHH
Q 012360 201 ALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHR------------------FILQNNITQDAFVKTALIDMY 262 (465)
Q Consensus 201 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~------------------~~~~~~~~~~~~~~~~l~~~~ 262 (465)
...++= ......+...|..++..+.. .+...-.++.+ +..+. .-+......|+..|
T Consensus 442 Ia~~lP---t~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~LY 515 (846)
T KOG2066|consen 442 IAPYLP---TGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAHLY 515 (846)
T ss_pred hhccCC---CCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHHHH
Confidence 444321 11111234455555555444 22211111111 11111 11223445588999
Q ss_pred HhcCCHHHHHHHHhcCCCCCh
Q 012360 263 SKCGSLEEALVTFYKTDCKDV 283 (465)
Q Consensus 263 ~~~~~~~~a~~~~~~~~~~~~ 283 (465)
...++++.|+..+-....+++
T Consensus 516 l~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 516 LYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHccChHHHHHHHHhccChHH
Confidence 999999999999988876544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.43 Score=40.73 Aligned_cols=121 Identities=12% Similarity=0.046 Sum_probs=89.3
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHH---HHHHHHhcCCh
Q 012360 326 AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKA---LLSACITYSEF 402 (465)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~ 402 (465)
......|+..+|...|+..... .+-+...-..++++|...|+.+.|..++..++.+....-+.. -+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 4456789999999999999863 334566777899999999999999999999987543333333 33444454444
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 403 DLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 403 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
.+... +++-...+|++...-..++..+...|+.++|.+.+=.+.+.
T Consensus 220 ~~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 220 PEIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44333 34445678999999999999999999999998866655443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.28 E-value=1.3 Score=43.53 Aligned_cols=177 Identities=11% Similarity=0.049 Sum_probs=117.1
Q ss_pred hhhHHHHHHHccCChHHHHHHhccCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcc
Q 012360 20 VGNSLIHFYGRMALFTDARVLFDKMPFRDV---GSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96 (465)
Q Consensus 20 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 96 (465)
....-++.+.+...++-|+.+.+.-.-+.. ........-+.+.|++++|..-|-+-... +.| ..++.-|..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 444556777777778888887766443211 12333445567889999999988876643 233 246677788
Q ss_pred hhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCC-chhHHHHHHHHHhcCChHHHHHHHH
Q 012360 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRN-IVSLNILINGYIDMELVDLAREVFD 175 (465)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 175 (465)
..+...--.+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+.-. ... ..-....+..+.+.+-.++|.-+-.
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 88888888899999998854 44445789999999999999888887753 111 1124455666666777777766554
Q ss_pred HhhcCChHHHHHHHHHHHHcCChhHHHHHHHHH
Q 012360 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKM 208 (465)
Q Consensus 176 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 208 (465)
+... +......+ +-..+++++|++.+..+
T Consensus 488 k~~~-he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 488 KFKK-HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred Hhcc-CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 4433 33333333 34567788888888766
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.06 Score=46.32 Aligned_cols=116 Identities=11% Similarity=0.028 Sum_probs=94.8
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHH----HHHHHHhcCCh
Q 012360 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKA----LLSACITYSEF 402 (465)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~----l~~~~~~~~~~ 402 (465)
...|+..+|-..++++.+ ..|.|...+..-=+++.-.|+.+.-...++++.. +++.+.|.- +.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 346888888888999986 5566777777777889999999999988888764 456554433 33345689999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 012360 403 DLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNM 446 (465)
Q Consensus 403 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 446 (465)
++|++.-+++.+++|.+......+...+...|++.++.++..+-
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 99999999999999999999999999999999999999988754
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.37 Score=36.95 Aligned_cols=127 Identities=11% Similarity=0.057 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHH
Q 012360 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364 (465)
Q Consensus 285 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (465)
....++..+...+.+.....+++.+...+ ..+....+.++..|++.+ ..+....++. . .+.......+..|
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~-----~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K-----SNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c-----cccCCHHHHHHHH
Confidence 34456666666777778888888777765 345667777777777653 3444444442 1 1223334466677
Q ss_pred HhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhc-CChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 012360 365 SRAGLLYQAEEFIKIMPAEDKFISYKALLSACITY-SEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431 (465)
Q Consensus 365 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 431 (465)
.+.+.++++..++.++.. +...+..+... ++++.|++++.+ +.++..|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 777777777777777652 33344444444 677777777665 345556666666554
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=1.4 Score=43.40 Aligned_cols=115 Identities=8% Similarity=-0.028 Sum_probs=67.7
Q ss_pred cCChHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHH
Q 012360 296 YGLGNEALRVFYQMERKG-IKPNE--ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372 (465)
Q Consensus 296 ~~~~~~a~~~~~~m~~~g-~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 372 (465)
..+.+.|...+....... ..+.. .....+.......+..+++...++..... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 456688888888764442 22222 23344443333433366777777765532 2344445555556668888888
Q ss_pred HHHHHHhCCCCC-ccchH-HHHHHHHHhcCChHHHHHHHHHHH
Q 012360 373 AEEFIKIMPAED-KFISY-KALLSACITYSEFDLGKKVANNMM 413 (465)
Q Consensus 373 A~~~~~~~~~~~-~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~ 413 (465)
+...+..|.... +..-| -=+.+++...|+.++|...|+++.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888888875421 11111 114555566788888988888873
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.013 Score=31.94 Aligned_cols=32 Identities=9% Similarity=0.150 Sum_probs=23.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 012360 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQS 419 (465)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 419 (465)
.|..+...+...|++++|++.+++++++.|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 46667777788888888888888888887764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.96 Score=41.15 Aligned_cols=149 Identities=15% Similarity=-0.004 Sum_probs=82.4
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC--hhh
Q 012360 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP---NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT--IEH 356 (465)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 356 (465)
...+|..++..+.+.|.++.|...+.++...+..+ .+.....-+......|+..+|+..++..... .+... ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44577778888888888888888888877643221 2334444556667778888888888877752 11111 111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCccchHHHHHHHHHhc------CChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 012360 357 FVCLVDLLSRAGLLYQAEEF-IKIMPAEDKFISYKALLSACITY------SEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 429 (465)
...+...+.. ..+..... ........-...+..+..-.... +..+++.+.|+++.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000112233333333334 788999999999999999888888888877
Q ss_pred Hhhc
Q 012360 430 YALE 433 (465)
Q Consensus 430 ~~~~ 433 (465)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 7654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.63 Score=38.97 Aligned_cols=56 Identities=11% Similarity=0.085 Sum_probs=44.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCch---hHHHHHHHHhhcCChHHHHHHHHHH
Q 012360 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHE---AYVLLSNFYALEGHWTEVAEARRNM 446 (465)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~ 446 (465)
.+.+.|.+.|.+..|..-++++++.-|+... .+..+..+|.+.|..++|.+.-+-+
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 3566788999999999999999997766554 4566778899999999988866544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.2 Score=37.89 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=58.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHH
Q 012360 290 IEGLANYGLGNEALRVFYQMERKGIKP----NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365 (465)
Q Consensus 290 ~~~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 365 (465)
.....+.|++++|.+.|+.+... -| .......++.+|.+.+++++|...+++.++.+.-.|++ -|...+.+++
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r--yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~ 93 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR--YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLS 93 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc--CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHH
Confidence 34445566667776666666654 22 22344556666666667777666666666543333332 2333333333
Q ss_pred hcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 366 RAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 366 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.-...+... ..+.. .=...+....|..-|+++++.-|++.-
T Consensus 94 ~~~~~~~~~---~~~~~------------~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 94 YYEQDEGSL---QSFFR------------SDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHhhhHH---hhhcc------------cccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 222211111 11110 000112355788888899988888763
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.01 Score=32.35 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=23.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 012360 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQ 418 (465)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 418 (465)
+|..++.++...|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 5677777888888888888888888888775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.73 Score=38.72 Aligned_cols=219 Identities=16% Similarity=0.108 Sum_probs=96.8
Q ss_pred CChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhccchhhHhHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCCHHHHHH
Q 012360 196 KQPEEALELFKKMIDEGVTP-DEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQDAFVKTALIDMYSKCGSLEEALV 273 (465)
Q Consensus 196 g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 273 (465)
+....+...+.......... ....+......+...+++..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44444444444444432211 2344444455555555555555555555432 122333444445555555555555555
Q ss_pred HHhcCCC--CCh-hhHHHHHH-HHHHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 274 TFYKTDC--KDV-VTWTTMIE-GLANYGLGNEALRVFYQMERKGIKP----NEATFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 274 ~~~~~~~--~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
.+..... ++. ........ .+...++++.|...+.+.... .| ....+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 5554432 111 11222222 455555555555555555332 22 12222233333444555555555555555
Q ss_pred cCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCc-cchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 012360 346 GVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDK-FISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418 (465)
Q Consensus 346 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 418 (465)
.. .+. ....+..+...+...++++.|...+..... .|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 195 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 31 112 234444455555555555555555544432 111 222333333333444455555555555555444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.36 Score=44.95 Aligned_cols=129 Identities=16% Similarity=0.141 Sum_probs=62.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHH
Q 012360 122 ENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEA 201 (465)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 201 (465)
.+.++..+-+.|-.+.|+++-. |. ..-.....+.|+++.|.++.++.. +...|..|.....+.|+++-|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~------D~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lA 366 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVT------DP---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELA 366 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcC------Ch---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHH
Confidence 4455555555555555555522 11 122333445555555555443333 444666666666666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 012360 202 LELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFY 276 (465)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 276 (465)
.+.|.+..+ +..++-.|...|+.+.-.++.+.....|. ++....++...|+.++..+++.
T Consensus 367 e~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 367 EECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 666655432 34444445555555555555555554441 2333344444455555555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.058 Score=45.24 Aligned_cols=97 Identities=12% Similarity=0.082 Sum_probs=70.7
Q ss_pred HHHhccCC--CCCcccHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcch-------------
Q 012360 38 RVLFDKMP--FRDVGSWNTLMSIYNDF-----SDSGEVLILFKQLIFEGIVADKITLVILFSACARL------------- 97 (465)
Q Consensus 38 ~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~------------- 97 (465)
...|+... ++|-.+|-..+..+... +..+-....++.|.+.|+..|..+|+.|++.+-+.
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44555555 56777888888777643 56677777889999999999999999999887542
Q ss_pred ---hhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCC
Q 012360 98 ---EKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE 134 (465)
Q Consensus 98 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 134 (465)
.+-+-+..++++|...|+.||..+-..|++++.+.+-
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 2334466777777777777777777777777776665
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.59 Score=43.02 Aligned_cols=103 Identities=12% Similarity=0.098 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCc--cchHHHHHH
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDK--FISYKALLS 394 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~~l~~ 394 (465)
..=..+..++.+.|+.++|++.++++.+.+...........|+.++...+.+.++..++.+-.+ -|. ..+|+..+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 3335577777889999999999999986432222345677899999999999999999988753 122 234554433
Q ss_pred HHHhcCC---------------hHHHHHHHHHHHHhCCCCch
Q 012360 395 ACITYSE---------------FDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 395 ~~~~~~~---------------~~~a~~~~~~~~~~~p~~~~ 421 (465)
-+...++ -..|.+.+.++++.+|..+.
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 2222222 13466889999998877664
|
The molecular function of this protein is uncertain. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.16 Score=37.93 Aligned_cols=92 Identities=11% Similarity=0.043 Sum_probs=48.8
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCCchhHHHHHHHHHhcCChHHHHHHHH--HhhcCChHHHHHHHHHHHHc
Q 012360 119 LNMENALLLMYAKCKEMDEALRLFDEM-GSRRNIVSLNILINGYIDMELVDLAREVFD--EIVDKDIVLWRSMMHGCVKA 195 (465)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~l~~~~~~~ 195 (465)
..++..+|.++++.|+.+....+++.. |+..+...-. +. +. .-..|+..+..+++.+|+.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~---------~~-------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKE---------GD-------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCcccc---------Cc-------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 345566666667777776666666655 3332211000 00 00 01235666666666666666
Q ss_pred CChhHHHHHHHHHHH-cCCCCCHHHHHHHHHH
Q 012360 196 KQPEEALELFKKMID-EGVTPDEEVMVSVLSA 226 (465)
Q Consensus 196 g~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~ 226 (465)
|++..|+++++...+ -+++.+..++..|+.-
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 666666666666554 2455555555555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.033 Score=44.13 Aligned_cols=99 Identities=9% Similarity=-0.073 Sum_probs=51.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHH
Q 012360 325 LAACRHSGLITEGCQLFRRMGGVYRVQPTI-----EHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACI 397 (465)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~ 397 (465)
..-+++.|++++|..-|..+.. -+++.. ..|..-.-++.+.+.++.|++-..+... .| ....+..-..+|-
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 3446667777777777777764 223221 2233333455566666666655544432 22 1111222233455
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchhHHH
Q 012360 398 TYSEFDLGKKVANNMMKLGNQSHEAYVL 425 (465)
Q Consensus 398 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 425 (465)
+...+++|++-|+++.+..|....+...
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 5566666666666666666655543333
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.86 E-value=1.7 Score=41.11 Aligned_cols=338 Identities=11% Similarity=0.026 Sum_probs=185.8
Q ss_pred chhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh--CCCCCchhHHHHHHH
Q 012360 83 DKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM--GSRRNIVSLNILING 160 (465)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~ 160 (465)
+-..+..++.---...+.+.+..++..++.. .|.--.-|......=.+.|..+.+.++|++- +++.+...|...+..
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAF 122 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3345566665555556667777777777754 2333345666667777889999999999987 666677777777665
Q ss_pred HH-hcCChHHHHHHHHHhhcC------ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc---cc
Q 012360 161 YI-DMELVDLAREVFDEIVDK------DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACS---SL 230 (465)
Q Consensus 161 ~~-~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~ 230 (465)
+. ..|+.+...+.|+....- +...|...|.--..++++.....++++.++. | ...|+.....|. +.
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHHhc
Confidence 55 456777777888777442 5567778888778888999999999998873 2 112222222111 11
Q ss_pred ------hhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHhcCCCCChh---hHHHH-------HHHH
Q 012360 231 ------SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG-SLEEALVTFYKTDCKDVV---TWTTM-------IEGL 293 (465)
Q Consensus 231 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~---~~~~l-------~~~~ 293 (465)
...+++.++-....... .....+ ..+.-....+....|... ..+.+ -..+
T Consensus 199 ~~~~~l~~~d~~~~l~~~~~~~~-------------~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~ 265 (577)
T KOG1258|consen 199 NEEKILLSIDELIQLRSDVAERS-------------KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVY 265 (577)
T ss_pred CChhhhcCHHHHHHHhhhHHhhh-------------hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHH
Confidence 11222222222211100 000000 111111111111111100 01111 1112
Q ss_pred HHcCChHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHh
Q 012360 294 ANYGLGNEALRVFYQMERK---GIKP----NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR 366 (465)
Q Consensus 294 ~~~~~~~~a~~~~~~m~~~---g~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 366 (465)
............++.-.+. .++| +..+|...+.-....|+.+.+.-+|++..- .+..-...|-..+.-...
T Consensus 266 ~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~ 343 (577)
T KOG1258|consen 266 QKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMES 343 (577)
T ss_pred HhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHH
Confidence 2222222233333332221 1222 345667777777777888888888887764 333445556566666666
Q ss_pred cCCHHHHHHHHHhCCC--CCccchHHHHHHHHH-hcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHH
Q 012360 367 AGLLYQAEEFIKIMPA--EDKFISYKALLSACI-TYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVA 440 (465)
Q Consensus 367 ~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 440 (465)
.|+.+-|..++.+... .+.......+-..+. ..|+++.|..+++...+.-|....+-..-+....+.|+.+.+.
T Consensus 344 ~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 344 SGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred cCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 6887777777665433 233333333333333 3568888888888887766766665566666677777777766
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.037 Score=40.43 Aligned_cols=57 Identities=18% Similarity=0.130 Sum_probs=52.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 393 LSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
.-++...|+.+.|++.|.+++.+-|..++.|+.-+.++.-+|+.++|+.-+++..+.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 446778999999999999999999999999999999999999999999999887664
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.16 Score=42.71 Aligned_cols=90 Identities=13% Similarity=0.117 Sum_probs=63.9
Q ss_pred cCChHHHHHHHHHHHH-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccch----------------hhHhHH
Q 012360 179 DKDIVLWRSMMHGCVK-----AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS----------------NLQYGR 237 (465)
Q Consensus 179 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~a~ 237 (465)
++|..+|-..+..|.. .++++=....++.|.+.|+.-|..+|+.|+..+-+.. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3455566665555543 3556666666777777777777778877777765432 235678
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 012360 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSL 268 (465)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 268 (465)
+++++|...|+-||..+-..++.++.+.+-.
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 8899999999999999888899888877653
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.56 Score=34.64 Aligned_cols=140 Identities=12% Similarity=0.069 Sum_probs=82.6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHH
Q 012360 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372 (465)
Q Consensus 293 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 372 (465)
+.-.|..++..++..+.... .+..-++.+|--....-+-+-..+.++.+-+-+.+.+-. -...++.+|...|.
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNK--- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcc---
Confidence 34467788888888877654 245566666655555566666677777766543333211 11234444444432
Q ss_pred HHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcC
Q 012360 373 AEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 373 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 451 (465)
+....+..+..+...|+-|.-.++++.+.+.+..+|.....++.+|.+.|+..++.+++++.=+.|+
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 2334555667777888888888888888876677777788889999999999999888888777765
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.76 Score=35.23 Aligned_cols=126 Identities=13% Similarity=0.115 Sum_probs=67.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHH
Q 012360 51 SWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA 130 (465)
Q Consensus 51 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 130 (465)
.-..++..+...+.+.....+++.+...+ ..+...++.++..+++.+. ......+.. ..+......+++.|.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCE 80 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHH
Confidence 34566677777777777777777777665 3555667777777765432 222233221 122233344666666
Q ss_pred hCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhc-CChHHHHHHHHHhhcCChHHHHHHHHHH
Q 012360 131 KCKEMDEALRLFDEMGSRRNIVSLNILINGYIDM-ELVDLAREVFDEIVDKDIVLWRSMMHGC 192 (465)
Q Consensus 131 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 192 (465)
+.+-++++.-++.+++. +...+..+... ++.+.|.+.+.+. .+...|..++..+
T Consensus 81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~ 135 (140)
T smart00299 81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKAL 135 (140)
T ss_pred HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 66667777766666531 22222223322 5555555555442 2334454444443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.51 E-value=3.5 Score=42.42 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=56.6
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 012360 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEG 337 (465)
Q Consensus 258 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a 337 (465)
.+..-.+.|-+.+|+.++..-.+.-...|.+....+.....+++|.-.|+..-+. .-.+.+|..+|+|.+|
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~ 984 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREA 984 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHH
Confidence 3344445556666665554333222334444444445555566655555432111 1234555666666666
Q ss_pred HHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 012360 338 CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383 (465)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (465)
+.+..++.. +-..-..+-..|+..+...+++-+|-++..+...+
T Consensus 985 l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 985 LSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred HHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC
Confidence 666665542 11111122245555666666666666666655543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.078 Score=45.28 Aligned_cols=60 Identities=22% Similarity=0.285 Sum_probs=36.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
++..++..+...|+++.+.+.+++.+...|-+...|..++.+|.+.|+...|+..++.+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 344455555556666666666666666666666666666666666666666666665553
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.95 Score=41.56 Aligned_cols=142 Identities=11% Similarity=0.025 Sum_probs=95.8
Q ss_pred CHHHHHHHHhcCC---CCC---hhhHHHHHHHHHHc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 012360 267 SLEEALVTFYKTD---CKD---VVTWTTMIEGLANY---------GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331 (465)
Q Consensus 267 ~~~~a~~~~~~~~---~~~---~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 331 (465)
..+.|+.+|.+.. +-| ...|..+..++... ....+|.++.++..+.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4567888888766 333 44555555444322 23456677777777774 44777888888888888
Q ss_pred CCHHHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHh-CCCCCcc---chHHHHHHHHHhcCChHHHH
Q 012360 332 GLITEGCQLFRRMGGVYRVQPT-IEHFVCLVDLLSRAGLLYQAEEFIKI-MPAEDKF---ISYKALLSACITYSEFDLGK 406 (465)
Q Consensus 332 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~---~~~~~l~~~~~~~~~~~~a~ 406 (465)
++++.|..+|++... +.|+ ...|......+.-.|+.++|.+.+++ +.-+|.. ......+..|+.. ..++|+
T Consensus 352 ~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 889999999999984 4454 56666666677789999999999998 5546632 2333344455554 467777
Q ss_pred HHHHHHH
Q 012360 407 KVANNMM 413 (465)
Q Consensus 407 ~~~~~~~ 413 (465)
.+|-+-.
T Consensus 428 ~~~~~~~ 434 (458)
T PRK11906 428 KLYYKET 434 (458)
T ss_pred HHHhhcc
Confidence 7776533
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.83 Score=42.62 Aligned_cols=158 Identities=13% Similarity=0.046 Sum_probs=93.0
Q ss_pred HHHHhcCChhHHHHHHHH-HHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCCh
Q 012360 57 SIYNDFSDSGEVLILFKQ-LIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM 135 (465)
Q Consensus 57 ~~~~~~~~~~~a~~~~~~-m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 135 (465)
....-.++++++.++.+. -.-..+ +......++..+-+.|-.+.|+.+-..- ..-.....+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCH
Confidence 344556777776666641 111111 2334666777777777777777664332 1234455677888
Q ss_pred HHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 012360 136 DEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP 215 (465)
Q Consensus 136 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 215 (465)
+.|.++.++. ++...|..|.+...+.|+++-|++.|.+... +..|.-.|.-.|+.+.-.++.+.....|-
T Consensus 335 ~~A~~~a~~~---~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-- 404 (443)
T PF04053_consen 335 DIALEIAKEL---DDPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERGD-- 404 (443)
T ss_dssp HHHHHHCCCC---STHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHhc---CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence 8888776664 3666888888888888888888888877753 55666677788888777777776666542
Q ss_pred CHHHHHHHHHHhccchhhHhHHHHHHH
Q 012360 216 DEEVMVSVLSACSSLSNLQYGRLVHRF 242 (465)
Q Consensus 216 ~~~~~~~ll~~~~~~~~~~~a~~~~~~ 242 (465)
++....++.-.|+.++..+++..
T Consensus 405 ----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 ----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444455556777776666544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.31 Score=42.68 Aligned_cols=123 Identities=13% Similarity=0.076 Sum_probs=69.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCC----CCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-----cc
Q 012360 323 SVLAACRHSGLITEGCQLFRRMGGVYR----VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM-------PAED-----KF 386 (465)
Q Consensus 323 ~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-----~~ 386 (465)
++..++...+.++++++.|+.+.+--. -.....++..|...|.+..++++|.-+..+. .-++ ..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 345666666677777777776642100 0112345666777777777777665544332 1111 11
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHhC------CCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 012360 387 ISYKALLSACITYSEFDLGKKVANNMMKLG------NQSHEAYVLLSNFYALEGHWTEVAEARRN 445 (465)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 445 (465)
.+...|.-++...|..-+|.+..+++.++. |........+++.|...|+.+.|+.-|+.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 122334456666777777777777776632 23333456677777777777777666654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.18 E-value=1.6 Score=36.55 Aligned_cols=216 Identities=18% Similarity=0.076 Sum_probs=119.7
Q ss_pred hhhHhHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCChhhHHHHHHHHHHcCChHHHHH
Q 012360 231 SNLQYGRLVHRFILQNNIT-QDAFVKTALIDMYSKCGSLEEALVTFYKTD-----CKDVVTWTTMIEGLANYGLGNEALR 304 (465)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~ 304 (465)
+....+...+......... ............+...+++..+...+.... ......+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443221 124455566666666677776666665543 2233455555556666666777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHhhcCCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012360 305 VFYQMERKGIKPNEATFVSVLA-ACRHSGLITEGCQLFRRMGGVYRV--QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 305 ~~~~m~~~g~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (465)
.+.........+. ........ .+...|+++.+...+.+.... .. ......+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 7776665432221 11222222 566677777777777776431 11 1223333344444556677777777766654
Q ss_pred C-CC--ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 382 A-ED--KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 382 ~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
. .+ ....+..+...+...++++.|...+.......|.....+..+...+...|.++++...+++...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 22 2445666666666666777777777777777766444455555555555666777666665543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.07 E-value=2.1 Score=37.36 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=9.0
Q ss_pred hCCChHHHHHHHHhh
Q 012360 131 KCKEMDEALRLFDEM 145 (465)
Q Consensus 131 ~~g~~~~A~~~~~~~ 145 (465)
+.|+++.|..++.+.
T Consensus 5 ~~~~~~~A~~~~~K~ 19 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKA 19 (278)
T ss_pred hhCCHHHHHHHHHHh
Confidence 456666666666655
|
It is also involved in sporulation []. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.051 Score=30.08 Aligned_cols=25 Identities=4% Similarity=0.046 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 012360 389 YKALLSACITYSEFDLGKKVANNMM 413 (465)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~ 413 (465)
|..|...|.+.|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555533
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.06 Score=29.18 Aligned_cols=31 Identities=10% Similarity=0.173 Sum_probs=23.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 012360 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQ 418 (465)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 418 (465)
+|..+...+...|++++|.+.|+++++..|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4666777777888888888888888887774
|
... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.91 E-value=1.6 Score=34.96 Aligned_cols=116 Identities=6% Similarity=-0.046 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCh----hhHHHHHHHHHhcCCHHHHH
Q 012360 301 EALRVFYQMERKGIKPNEATFV--SVLAACRHSGLITEGCQLFRRMGGVYRVQPTI----EHFVCLVDLLSRAGLLYQAE 374 (465)
Q Consensus 301 ~a~~~~~~m~~~g~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~ 374 (465)
+......++....-.....++. .+...+...+++++|...++..... +.|. ..-..|.+.....|.+|+|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4444555555442111222222 3346677888888888888877742 2221 12234566777888888888
Q ss_pred HHHHhCCCCC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 012360 375 EFIKIMPAED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419 (465)
Q Consensus 375 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 419 (465)
..++....+. .......-+..+...|+-++|..-|+++++.++++
T Consensus 147 ~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 147 KTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 8888877543 22233445567788888888888888888876443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.71 Score=36.81 Aligned_cols=125 Identities=15% Similarity=0.056 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHH-----HHHHHHHhcCCHHHHHHHHHhCCCCCccchHH---
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV-----CLVDLLSRAGLLYQAEEFIKIMPAEDKFISYK--- 390 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--- 390 (465)
..|..++.+.. .+.. +.....+++... +...+|. .+...+..+|++++|...++.....+....+.
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~----n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~ 128 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQA----NGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhh----ccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHH
Confidence 34444554443 2333 455555666543 2122232 45567889999999999999776555333333
Q ss_pred --HHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 391 --ALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 391 --~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
.|.+.....|.+|+|+..++...+.+=. +.....-++++...|+.++|+.-|++....+
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w~-~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESWA-AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccHH-HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3556677899999999998865543211 1225567899999999999999999888776
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.85 E-value=1 Score=35.10 Aligned_cols=129 Identities=16% Similarity=0.175 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChh-hHHHH-
Q 012360 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA-TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIE-HFVCL- 360 (465)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l- 360 (465)
..|..-+. +.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.... .|-+. -...|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHH
Confidence 34444443 466788899999999999887654332 222334556778999999999999986522 23221 11122
Q ss_pred -HHHHHhcCCHHHHHHHHHhCCCCCcc---chHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012360 361 -VDLLSRAGLLYQAEEFIKIMPAEDKF---ISYKALLSACITYSEFDLGKKVANNMMK 414 (465)
Q Consensus 361 -~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (465)
.-++...|.++....-.+.+..+.++ ..-..|.-+-.+.|++.+|.+.|..+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 23456788899888888877654432 3345666777789999999999998877
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.75 E-value=2.6 Score=36.80 Aligned_cols=157 Identities=14% Similarity=0.040 Sum_probs=83.8
Q ss_pred HhcCChhHHHHHHHHHHHcC--CCCchh------hHHHHHHHhcchh-hhhhhhHHHHHHHHh----C----Cccc----
Q 012360 60 NDFSDSGEVLILFKQLIFEG--IVADKI------TLVILFSACARLE-KLHYGKTVHCYATKV----G----LEYM---- 118 (465)
Q Consensus 60 ~~~~~~~~a~~~~~~m~~~~--~~~~~~------~~~~l~~~~~~~~-~~~~a~~~~~~~~~~----~----~~~~---- 118 (465)
.+.|+.+.|..++.+..... ..|+.. .|+.-.. ....+ +++.|..++++..+. + ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46777788888777775432 223222 1222222 22334 677776666665443 1 1122
Q ss_pred -hhhHHHHHHHHHhCCChHH---HHHHHHhh-CCCCC-chhHHHHHHHHHhcCChHHHHHHHHHhhcC---ChHHHHHHH
Q 012360 119 -LNMENALLLMYAKCKEMDE---ALRLFDEM-GSRRN-IVSLNILINGYIDMELVDLAREVFDEIVDK---DIVLWRSMM 189 (465)
Q Consensus 119 -~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~ 189 (465)
..++..++.+|...+..+. |..+++.+ +.-|+ ...+..-+..+.+.++.+.+.+.+.+|+.. ....+...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 2455677788887776554 44444445 22333 444555566666678888888888887543 234444444
Q ss_pred HHHHH--cCChhHHHHHHHHHHHcCCCCCH
Q 012360 190 HGCVK--AKQPEEALELFKKMIDEGVTPDE 217 (465)
Q Consensus 190 ~~~~~--~g~~~~a~~~~~~~~~~~~~~~~ 217 (465)
..+.. ......|...+..+....+.|..
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 44421 22334555666665544444444
|
It is also involved in sporulation []. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.64 E-value=6.3 Score=40.72 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=77.0
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH----HHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 012360 193 VKAKQPEEALELFKKMIDEGVTPDEEVMVSVL----SACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268 (465)
Q Consensus 193 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 268 (465)
-+.|.+++|+.++ .|+...+.... ..+.....++.|.-.|+..-+. .--+.+|..+|+|
T Consensus 919 ~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dW 981 (1265)
T KOG1920|consen 919 KKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDW 981 (1265)
T ss_pred Hhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccH
Confidence 3444444444443 45655554444 3445566677777666654332 2356778888888
Q ss_pred HHHHHHHhcCCCCChhh---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 269 EEALVTFYKTDCKDVVT---WTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 269 ~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
.+|+.+...+..+-... -..|+.-+...+++-+|-++..+-... | ...+..+++...+++|+.+.....
T Consensus 982 r~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 982 REALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 88888888776542222 256777788888888888877665432 1 123344556666777766665544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.57 Score=41.11 Aligned_cols=165 Identities=8% Similarity=0.019 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHH----HHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC---hhh
Q 012360 285 TWTTMIEGLANYGLGNEALRVFYQ----MERKG-IKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT---IEH 356 (465)
Q Consensus 285 ~~~~l~~~~~~~~~~~~a~~~~~~----m~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 356 (465)
++..+..+.++.|.+++++..--. ..+.. -..--..|..+.+++.+..++.+++.+-..-....|..|. -..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 444455556666666655432211 11110 0011235566667776766777777766655543344341 223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC----CC----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhC----CCCch---
Q 012360 357 FVCLVDLLSRAGLLYQAEEFIKIMPA----ED----KFISYKALLSACITYSEFDLGKKVANNMMKLG----NQSHE--- 421 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~--- 421 (465)
...+..++...+.++++++.|+.... .. ...++..|...|....|+++|.-+..++.++- ..+..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 44577788888899999999987532 22 33578899999999999999999998887743 23322
Q ss_pred ---hHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 422 ---AYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 422 ---~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
....++.++...|+..+|.+.-++..+.
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4567788899999999999888776543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.50 E-value=1.4 Score=32.63 Aligned_cols=63 Identities=11% Similarity=0.150 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCC
Q 012360 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI 248 (465)
Q Consensus 185 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 248 (465)
....+......|+-++-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344556667777777777777776642 355666666777777777777777777777776664
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.057 Score=29.88 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=22.5
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 422 AYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 422 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
+|..|+.+|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 37889999999999999999999854
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.44 E-value=2.3 Score=34.71 Aligned_cols=158 Identities=11% Similarity=0.010 Sum_probs=76.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHH
Q 012360 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361 (465)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 361 (465)
+..||-+.--+...|+++.|.+.|+...+. .|. ..+...-.-++.-.|++.-|.+-+...-+...-.|-...|..+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 446666666677777777777777777665 332 11221112223345777777666655554322223333333222
Q ss_pred HHHHhcCCHHHHHHH-HHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC-------chhHHHHHHHHhhc
Q 012360 362 DLLSRAGLLYQAEEF-IKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS-------HEAYVLLSNFYALE 433 (465)
Q Consensus 362 ~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 433 (465)
+ +.-++.+|..- .++... -+..-|...+-.+.- |+.. ...+++++.+-..++ ..+|..|+.-+...
T Consensus 177 E---~k~dP~~A~tnL~qR~~~-~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 177 E---QKLDPKQAKTNLKQRAEK-SDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred H---hhCCHHHHHHHHHHHHHh-ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 1 23345555543 333332 222233222222211 1111 122333333322222 22577777778888
Q ss_pred CChHHHHHHHHHHHH
Q 012360 434 GHWTEVAEARRNMKE 448 (465)
Q Consensus 434 g~~~~a~~~~~~~~~ 448 (465)
|+.++|..+|+....
T Consensus 251 G~~~~A~~LfKLaia 265 (297)
T COG4785 251 GDLDEATALFKLAVA 265 (297)
T ss_pred ccHHHHHHHHHHHHH
Confidence 888888887776544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.39 E-value=4.8 Score=38.24 Aligned_cols=80 Identities=14% Similarity=0.091 Sum_probs=32.9
Q ss_pred ChHHHHHHHHHhhc--CChHHHHHH-HHHHHHcCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHhccchhhHhHHHH
Q 012360 166 LVDLAREVFDEIVD--KDIVLWRSM-MHGCVKAKQPEEALELFKKMIDEG---VTPDEEVMVSVLSACSSLSNLQYGRLV 239 (465)
Q Consensus 166 ~~~~a~~~~~~~~~--~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~ 239 (465)
..+.|.++++.+.. |+...|... .+.+...|++++|++.|++..... .+.....+--+...+.-..++++|...
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 34445555555433 333333222 233344455555555555433210 011112222333344445555555555
Q ss_pred HHHHHH
Q 012360 240 HRFILQ 245 (465)
Q Consensus 240 ~~~~~~ 245 (465)
+..+.+
T Consensus 328 f~~L~~ 333 (468)
T PF10300_consen 328 FLRLLK 333 (468)
T ss_pred HHHHHh
Confidence 555544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.29 E-value=2.1 Score=33.68 Aligned_cols=58 Identities=19% Similarity=0.147 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHH
Q 012360 184 LWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245 (465)
Q Consensus 184 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (465)
.+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..+
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566666777777777766654221 111123345555555555544444444443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.16 E-value=1.5 Score=40.48 Aligned_cols=69 Identities=10% Similarity=0.038 Sum_probs=48.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC---ccchHHHHHHHHHhcCChHHHHHHHHHHHHhC-CCCchh
Q 012360 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED---KFISYKALLSACITYSEFDLGKKVANNMMKLG-NQSHEA 422 (465)
Q Consensus 354 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~ 422 (465)
...-..|..++.+.|+.++|.+.++++.. .| +......|+.++...+.+.++..++.+.-+.. |.+.+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti 332 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATI 332 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHH
Confidence 33445677777788888888888887753 33 23356678888888888888888888876554 666553
|
The molecular function of this protein is uncertain. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.88 E-value=2.2 Score=33.12 Aligned_cols=50 Identities=12% Similarity=0.029 Sum_probs=23.2
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012360 330 HSGLITEGCQLFRRMGGVYRVQPTIEH-FVCLVDLLSRAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (465)
..++.+++..+++.+. -+.|.... -..-...+...|++.+|..+|+++..
T Consensus 22 ~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 4455555555555554 22332111 11222334555666666666665544
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.14 Score=27.37 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=18.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 012360 391 ALLSACITYSEFDLGKKVANNMMKLGNQS 419 (465)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 419 (465)
.++.++.+.|++++|.+.|+++++..|++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 44555666667777777777776666653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.63 E-value=8.3 Score=38.29 Aligned_cols=175 Identities=15% Similarity=0.081 Sum_probs=100.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhcCChHH----HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc
Q 012360 154 LNILINGYIDMELVDLAREVFDEIVDKDIVL----WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229 (465)
Q Consensus 154 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 229 (465)
...-+..+++...++-|..+-+.-.. +..+ .....+.+.+.|++++|...|-+-... +.|. .++.-|..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 34445555566666666665544422 2222 222334455678888887777665543 3332 24445566
Q ss_pred chhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh--hHHHHHHHHHHcCChHHHHHHHH
Q 012360 230 LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV--TWTTMIEGLANYGLGNEALRVFY 307 (465)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~ 307 (465)
......-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+... .... -....+..+.+.+-.++|..+-.
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 66666677777777777754 34455667888888888888777777665 2222 23445555666666666665544
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 308 QMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 308 ~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
+... +......++ -..+++++|+++++.+.
T Consensus 488 k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 488 KFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred Hhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 4321 233333333 34578888888877664
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.18 Score=29.37 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=26.7
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 421 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
..+..++.+|.+.|++++|.+++++..+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 468899999999999999999999987753
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.45 E-value=4.2 Score=34.28 Aligned_cols=56 Identities=11% Similarity=0.051 Sum_probs=32.2
Q ss_pred HHHHcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHhccchhhHhHHHHHHHHHHc
Q 012360 191 GCVKAKQPEEALELFKKMIDEGV--TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246 (465)
Q Consensus 191 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 246 (465)
.-.+.|++++|.+.|+.+..+.+ +-...+...++.++.+.++++.|....++....
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 34566677777777776665411 112334444555566666677776666666554
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.17 Score=28.88 Aligned_cols=27 Identities=7% Similarity=0.185 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012360 388 SYKALLSACITYSEFDLGKKVANNMMK 414 (465)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (465)
+++.+...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455566666666666666666666655
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.28 E-value=17 Score=40.88 Aligned_cols=145 Identities=6% Similarity=0.005 Sum_probs=92.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHH----HHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHH
Q 012360 54 TLMSIYNDFSDSGEVLILFKQL----IFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMY 129 (465)
Q Consensus 54 ~l~~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 129 (465)
.+..+-.+.+.+.+|+..++.- .+.. .....|..+...|+..++++...-+..... .+... ..-+-..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl-~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSL-YQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccH-HHHHHHH
Confidence 4445666788888999888883 2221 122334444458888888888777665411 11222 2334456
Q ss_pred HhCCChHHHHHHHHhh-CCCCC-chhHHHHHHHHHhcCChHHHHHHHHHhhcC---ChHHH-HHHHHHHHHcCChhHHHH
Q 012360 130 AKCKEMDEALRLFDEM-GSRRN-IVSLNILINGYIDMELVDLAREVFDEIVDK---DIVLW-RSMMHGCVKAKQPEEALE 203 (465)
Q Consensus 130 ~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~l~~~~~~~g~~~~a~~ 203 (465)
...|++..|...|+.+ +..|+ ...++-++......|.++...-..+..... ....+ +.=+.+--+.++++....
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 6789999999999998 55665 667888888888888888888777666332 22222 223344467777777766
Q ss_pred HHH
Q 012360 204 LFK 206 (465)
Q Consensus 204 ~~~ 206 (465)
...
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 654
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.56 Score=36.25 Aligned_cols=82 Identities=15% Similarity=0.030 Sum_probs=55.1
Q ss_pred hHHHHHHH---HHhcCCHHHHHHHHHhCCC-CCccch-HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 012360 356 HFVCLVDL---LSRAGLLYQAEEFIKIMPA-EDKFIS-YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY 430 (465)
Q Consensus 356 ~~~~l~~~---~~~~g~~~~A~~~~~~~~~-~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 430 (465)
+.+.|++. -.+.++.+++..+++.+.. .|.... -..-...+...|++.+|+.+++.+.+..|..+..-..++.++
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 34444443 3467889999999887754 443222 222334466899999999999998888788776566666666
Q ss_pred hhcCChH
Q 012360 431 ALEGHWT 437 (465)
Q Consensus 431 ~~~g~~~ 437 (465)
...|+.+
T Consensus 89 ~~~~D~~ 95 (160)
T PF09613_consen 89 YALGDPS 95 (160)
T ss_pred HHcCChH
Confidence 6666644
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.53 Score=35.70 Aligned_cols=71 Identities=11% Similarity=0.186 Sum_probs=47.1
Q ss_pred HhcCCHHHHHHHHHhCCC-CC---ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChH
Q 012360 365 SRAGLLYQAEEFIKIMPA-ED---KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWT 437 (465)
Q Consensus 365 ~~~g~~~~A~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 437 (465)
...++++++..+++.+.. .| ...++.. ..+...|++++|+.++++..+..|..+..-..++.++.-.|+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 347788888888877643 23 3344443 34567888888888888888877776654555566666666544
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.37 Score=37.09 Aligned_cols=83 Identities=14% Similarity=0.079 Sum_probs=42.9
Q ss_pred HHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHH
Q 012360 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDL 169 (465)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 169 (465)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++... ..-...++..|.+.|.+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~----~yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN----NYDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS----SS-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc----ccCHHHHHHHHHhcchHHH
Confidence 445555556666666666666655544555566666666666666566666555321 1222334444455555555
Q ss_pred HHHHHHH
Q 012360 170 AREVFDE 176 (465)
Q Consensus 170 a~~~~~~ 176 (465)
+.-++.+
T Consensus 89 a~~Ly~~ 95 (143)
T PF00637_consen 89 AVYLYSK 95 (143)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 5444433
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.61 E-value=6.6 Score=34.31 Aligned_cols=62 Identities=6% Similarity=-0.149 Sum_probs=27.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 012360 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417 (465)
Q Consensus 352 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 417 (465)
++..+-...+.++.+.|+. .|...+-.....++ .....+.++...|+. +|...+.++.+..|
T Consensus 204 ~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred CChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 3444444455555555553 23332222222222 223444555555553 45555665555544
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.3 Score=26.28 Aligned_cols=30 Identities=30% Similarity=0.366 Sum_probs=25.3
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 421 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
..+..++.++...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 458899999999999999999999887653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.56 E-value=5.3 Score=33.11 Aligned_cols=24 Identities=0% Similarity=0.112 Sum_probs=14.4
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCc
Q 012360 397 ITYSEFDLGKKVANNMMKLGNQSH 420 (465)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~~~p~~~ 420 (465)
...+++.+|+.+|++.....-+++
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch
Confidence 345667777777777666554433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.55 E-value=2.7 Score=33.71 Aligned_cols=95 Identities=11% Similarity=0.055 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCh------hh
Q 012360 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE--ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI------EH 356 (465)
Q Consensus 285 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~ 356 (465)
.+..+...|.+.|+.+.|.+.|.++.+....|.. ..+..+++.....+++..+...+.++........+. .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4566677777778888888888877776544443 345666777777788888777777765321111111 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC
Q 012360 357 FVCLVDLLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (465)
|..| .+...+++.+|.+.|-...
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 2345677777777766554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.52 E-value=9.1 Score=35.75 Aligned_cols=163 Identities=12% Similarity=0.029 Sum_probs=87.8
Q ss_pred CCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhhHHHHH
Q 012360 214 TPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC---KDVVTWTTMI 290 (465)
Q Consensus 214 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~ 290 (465)
..|.....+++..+....+..-+..+..+|..-| .+...+..++++|... ..+.-..+++++.+ .|+..-..|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 3455666777777777777777777888777755 3455666777777766 34444455553332 2333333444
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHH
Q 012360 291 EGLANYGLGNEALRVFYQMERKGIKP--N---EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365 (465)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~m~~~g~~p--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 365 (465)
..|-+ .+.+.+..+|.+....-++- + ...|..+... -..+.+..+.+..++....|...-...+..+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44433 55566666666655432110 0 0122222221 134555566666666554444444444445555555
Q ss_pred hcCCHHHHHHHHHhCCC
Q 012360 366 RAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 366 ~~g~~~~A~~~~~~~~~ 382 (465)
...++++|++++..+.+
T Consensus 217 ~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 217 ENENWTEAIRILKHILE 233 (711)
T ss_pred cccCHHHHHHHHHHHhh
Confidence 66666666666665544
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.48 Score=41.16 Aligned_cols=92 Identities=17% Similarity=0.069 Sum_probs=48.0
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC--ccchHHHHHHHHHhcCChH
Q 012360 327 ACRHSGLITEGCQLFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED--KFISYKALLSACITYSEFD 403 (465)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 403 (465)
-|.++|.+++|+..|..... +.| +..++..-..+|.+...+..|+.-......-. -...|..-+.+-...|...
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 34555666666666655552 223 45555555555555555555555444433211 1223333334444456666
Q ss_pred HHHHHHHHHHHhCCCCch
Q 012360 404 LGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 404 ~a~~~~~~~~~~~p~~~~ 421 (465)
+|.+-++.++++.|.+..
T Consensus 183 EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHhHHHHHhhCcccHH
Confidence 666667777777776554
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.48 Score=41.16 Aligned_cols=88 Identities=11% Similarity=-0.006 Sum_probs=73.5
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHH
Q 012360 361 VDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTE 438 (465)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 438 (465)
.+.|.++|.+++|++.|..... .| ++.++..-..+|.+...+..|+.-...++.++.....+|...+.+-...|+..+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 4568899999999999987543 56 888888888899999999999999999999887777788888888888888888
Q ss_pred HHHHHHHHHH
Q 012360 439 VAEARRNMKE 448 (465)
Q Consensus 439 a~~~~~~~~~ 448 (465)
|.+-.+...+
T Consensus 184 AKkD~E~vL~ 193 (536)
T KOG4648|consen 184 AKKDCETVLA 193 (536)
T ss_pred HHHhHHHHHh
Confidence 8776665543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.35 Score=26.10 Aligned_cols=30 Identities=37% Similarity=0.416 Sum_probs=25.6
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 421 EAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 421 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
.+|..++.+|...|++++|...+++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 368899999999999999999999887653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=92.27 E-value=13 Score=36.93 Aligned_cols=319 Identities=9% Similarity=-0.050 Sum_probs=158.3
Q ss_pred ccchhhHHHHHHHHHhCCChHHHHHHHHhh--CCCCCchhHHHHHHHHHhcCChHHHH--HHHHHh-hcCChHHHHHHHH
Q 012360 116 EYMLNMENALLLMYAKCKEMDEALRLFDEM--GSRRNIVSLNILINGYIDMELVDLAR--EVFDEI-VDKDIVLWRSMMH 190 (465)
Q Consensus 116 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~--~~~~~~-~~~~~~~~~~l~~ 190 (465)
+.+.........+....|+.++|......+ .-......+..+++.+.+.|.+.... +-++.. ...+...-..+..
T Consensus 126 p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~ 205 (644)
T PRK11619 126 PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAK 205 (644)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444556677777888887777777766 22445667777777777666543322 111111 1122222222222
Q ss_pred HH-----------HH-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh--ccchhhHhHHHHHHHHHHcC-CCCCh--h
Q 012360 191 GC-----------VK-AKQPEEALELFKKMIDEGVTPDEEVMVSVLSAC--SSLSNLQYGRLVHRFILQNN-ITQDA--F 253 (465)
Q Consensus 191 ~~-----------~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~-~~~~~--~ 253 (465)
.+ .. ..+...+...+. .+.|+...-..++-++ ....+.+.|...+....... ..+.. .
T Consensus 206 ~l~~~~~~~a~a~~al~~~p~~~~~~~~-----~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~ 280 (644)
T PRK11619 206 QLPADYQTIASALIKLQNDPNTVETFAR-----TTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQE 280 (644)
T ss_pred hcChhHHHHHHHHHHHHHCHHHHHHHhh-----ccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 11 00 011111111111 1122221111111111 13445577888887764432 22221 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCC--ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 012360 254 VKTALIDMYSKCGSLEEALVTFYKTDCK--DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331 (465)
Q Consensus 254 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 331 (465)
+...+.......+...++...++....+ +......-+......++++.+...+..|.... .-...-..-+.+++...
T Consensus 281 ~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~ 359 (644)
T PRK11619 281 LRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQ 359 (644)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHc
Confidence 2333433333333356677777765432 44444455555557888888888888875432 22344455677777778
Q ss_pred CCHHHHHHHHHHhhcCC-----------CCCCC------hhh--------HHHHHHHHHhcCCHHHHHHHHHhCCCCCcc
Q 012360 332 GLITEGCQLFRRMGGVY-----------RVQPT------IEH--------FVCLVDLLSRAGLLYQAEEFIKIMPAEDKF 386 (465)
Q Consensus 332 ~~~~~a~~~~~~~~~~~-----------~~~~~------~~~--------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (465)
|+.++|..+|+.+.... |.++. ... -..-+..+...|+...|...+..+....+.
T Consensus 360 g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~ 439 (644)
T PRK11619 360 GRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASRSK 439 (644)
T ss_pred CCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCH
Confidence 99999988888874321 11100 000 011233455667777777766655444444
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHhC---CCCchhHHHHHHHHhhcCChHHHH
Q 012360 387 ISYKALLSACITYSEFDLGKKVANNMMKLG---NQSHEAYVLLSNFYALEGHWTEVA 440 (465)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~ 440 (465)
.....+.....+.|.++.++.........+ -.-+..|...+..+.+.-..+.++
T Consensus 440 ~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~l 496 (644)
T PRK11619 440 TEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSY 496 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHH
Confidence 445555555556777777776665443311 011223445555555544555444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.24 E-value=1.9 Score=34.53 Aligned_cols=94 Identities=12% Similarity=0.027 Sum_probs=61.2
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch--hhHHHHHHHhcchhhhhhhhHHHHHHHHhCC---ccch----h
Q 012360 50 GSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADK--ITLVILFSACARLEKLHYGKTVHCYATKVGL---EYML----N 120 (465)
Q Consensus 50 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~----~ 120 (465)
..+..+...|++.|+.+.|++.|.++.+....+.. ..+-.+|+.....+++..+...+.+....-- .++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 46777888888888888888888888776544433 2456677777778888888777776654321 1221 1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHhh
Q 012360 121 MENALLLMYAKCKEMDEALRLFDEM 145 (465)
Q Consensus 121 ~~~~l~~~~~~~g~~~~A~~~~~~~ 145 (465)
+|..+ .+...+++..|-+.|-+.
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHcc
Confidence 22222 233467888888777666
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=92.12 E-value=2.5 Score=38.80 Aligned_cols=125 Identities=11% Similarity=0.034 Sum_probs=76.9
Q ss_pred HHHcCChHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHH
Q 012360 293 LANYGLGNEALRVF-YQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLY 371 (465)
Q Consensus 293 ~~~~~~~~~a~~~~-~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 371 (465)
-...|+.-.|.+-+ ..+....-.|+... .....+...|+++.+.+.+..... -+.....+..++++...+.|+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHH
Confidence 34456666665444 43443322333333 233445667888888888877764 33455667777888888888888
Q ss_pred HHHHHHHhCCCCC--ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 372 QAEEFIKIMPAED--KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 372 ~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
+|...-..|..+. ++.............|-++++...|++...++|+...
T Consensus 375 ~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 375 EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence 8888877775422 3333333333444567788888888888888754433
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.77 Score=39.49 Aligned_cols=102 Identities=15% Similarity=0.132 Sum_probs=63.6
Q ss_pred hccCCcchhhhHHHHHHHccCChHHHHHHhccCCC-CCc-----ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchh
Q 012360 12 TALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF-RDV-----GSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKI 85 (465)
Q Consensus 12 ~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 85 (465)
.|.+.++.+-..++..-....+++++...+=+++. |+. .+-.+.++. +-.-++++++.++..-+..|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence 34555666666666666666677777766655542 211 111222222 23345667777777777777778888
Q ss_pred hHHHHHHHhcchhhhhhhhHHHHHHHHhC
Q 012360 86 TLVILFSACARLEKLHYGKTVHCYATKVG 114 (465)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (465)
+++.+++.+.+.+++..|.++...|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888877777777777776666543
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.59 Score=37.93 Aligned_cols=65 Identities=12% Similarity=-0.001 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh-CCCCC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 357 FVCLVDLLSRAGLLYQAEEFIKI-MPAED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.+.-+..+.+.+...+|+...+. ++.+| +...-..++..++-.|++++|..-++-+-++.|+...
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 34445667778888888887654 55566 5666677888888889999888888888888776543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.92 E-value=8.1 Score=33.77 Aligned_cols=231 Identities=10% Similarity=-0.046 Sum_probs=102.7
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhh----hhhhHHHHHHHHhCCccchh
Q 012360 45 PFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKL----HYGKTVHCYATKVGLEYMLN 120 (465)
Q Consensus 45 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~ 120 (465)
..+|.......+.++...|. ..+...+..+.. .+|...-...+.+++..|+. ..+...+..+... .++..
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~ 106 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSAC 106 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHH
Confidence 44455555555555555553 233333333333 22333333444445555442 2344444444222 33444
Q ss_pred hHHHHHHHHHhCCC-----hHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHc
Q 012360 121 MENALLLMYAKCKE-----MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKA 195 (465)
Q Consensus 121 ~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 195 (465)
+-...+.++...+. ...+...+...-..++..+-...+.++.+.++.+....+...+..++..+-...+.++...
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 44444444444321 1223333333322344455555555555555533333333333445555555555555544
Q ss_pred C-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 012360 196 K-QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVT 274 (465)
Q Consensus 196 g-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 274 (465)
+ +...+...+..+.. .++..+-...+.++.+.++. .+...+-...+.+. .....+.++...|+. +|...
T Consensus 187 ~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~ 256 (280)
T PRK09687 187 KYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPV 256 (280)
T ss_pred CCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHH
Confidence 2 23345555555553 33445555555666666653 33333333333321 233455666666664 45555
Q ss_pred HhcCC--CCChhhHHHHHH
Q 012360 275 FYKTD--CKDVVTWTTMIE 291 (465)
Q Consensus 275 ~~~~~--~~~~~~~~~l~~ 291 (465)
+..+. .+|...-...+.
T Consensus 257 L~~l~~~~~d~~v~~~a~~ 275 (280)
T PRK09687 257 LDTLLYKFDDNEIITKAID 275 (280)
T ss_pred HHHHHhhCCChhHHHHHHH
Confidence 55433 234443333333
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.77 E-value=1.2 Score=38.30 Aligned_cols=59 Identities=10% Similarity=0.161 Sum_probs=47.8
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHhh-CC-CCCchhHHHHHHHHHhcCChHHHHHHHHHh
Q 012360 119 LNMENALLLMYAKCKEMDEALRLFDEM-GS-RRNIVSLNILINGYIDMELVDLAREVFDEI 177 (465)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 177 (465)
..++..++..+...|+++.+.+.++++ .. +-+...|..++.+|.+.|+...|+..|+.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 445677888888888888888888888 33 447778888999999999988888888877
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.65 E-value=3.3 Score=33.35 Aligned_cols=87 Identities=13% Similarity=-0.018 Sum_probs=46.1
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHH
Q 012360 292 GLANYGLGNEALRVFYQMERKGIKPNE-----ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT-IEHFVCLVDLLS 365 (465)
Q Consensus 292 ~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 365 (465)
-+...|++++|..-|...++. +++.. ..|..-..++.+.+.++.|+.-..+.++- .|+ ......-..+|.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel---~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL---NPTYEKALERRAEAYE 179 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc---CchhHHHHHHHHHHHH
Confidence 356666777777766666655 22221 12333334455666666666666666532 232 222223344566
Q ss_pred hcCCHHHHHHHHHhCCC
Q 012360 366 RAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 366 ~~g~~~~A~~~~~~~~~ 382 (465)
+...+++|++-|..+..
T Consensus 180 k~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILE 196 (271)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 66666666666666543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.50 E-value=7.8 Score=34.12 Aligned_cols=144 Identities=15% Similarity=0.187 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHhhcCCCCC--CChhhHHHHHHHHHhcCCH-
Q 012360 300 NEALRVFYQMERKGIKPNEATFVSVLAACRH--SG----LITEGCQLFRRMGGVYRVQ--PTIEHFVCLVDLLSRAGLL- 370 (465)
Q Consensus 300 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~- 370 (465)
++...+++.|.+.|++-+..+|.+....... .. ...+|..+|+.|++.+.+- ++..++..++.. ..++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4456777888888887777666543322222 22 3556788888888765442 333344444322 33333
Q ss_pred ---HHHHHHHHhCCC----CCcc-chHHHHHHHHHhcCC--hHHHHHHHHHHHHhC-CCCchhHHHHHHHHhhcCChHHH
Q 012360 371 ---YQAEEFIKIMPA----EDKF-ISYKALLSACITYSE--FDLGKKVANNMMKLG-NQSHEAYVLLSNFYALEGHWTEV 439 (465)
Q Consensus 371 ---~~A~~~~~~~~~----~~~~-~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a 439 (465)
+.++.+|+.+.. ++|. .....++..+-...+ ..++.++++.+.+.+ +.....|..++-...-.+..++.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~ 236 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKI 236 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHH
Confidence 334455555433 2222 333333333222111 346777777777766 33333355555444444444244
Q ss_pred HHHHHH
Q 012360 440 AEARRN 445 (465)
Q Consensus 440 ~~~~~~ 445 (465)
..-+.+
T Consensus 237 ~~~i~e 242 (297)
T PF13170_consen 237 VEEIKE 242 (297)
T ss_pred HHHHHH
Confidence 443333
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.26 Score=37.95 Aligned_cols=129 Identities=14% Similarity=0.191 Sum_probs=74.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCC
Q 012360 54 TLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCK 133 (465)
Q Consensus 54 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 133 (465)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++. .+..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 34666667788888888888888766555677778888888888777777766651 11122245666667777
Q ss_pred ChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCC
Q 012360 134 EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQ 197 (465)
Q Consensus 134 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 197 (465)
.+++|.-++.++|....... .+...++++.|.+.+.+. .+...|..++..+...+.
T Consensus 85 l~~~a~~Ly~~~~~~~~al~------i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDEALE------ILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp SHHHHHHHHHCCTTHTTCSS------TSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred hHHHHHHHHHHcccHHHHHH------HHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence 77777777666632111111 122233334443222222 246677777777766554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.47 Score=24.56 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 012360 389 YKALLSACITYSEFDLGKKVANNMMKLGN 417 (465)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 417 (465)
|..+...+...|+++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44455555555666666666655555544
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=90.91 E-value=0.37 Score=24.18 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=16.4
Q ss_pred hHHHHHHHHhhcCChHHHHHHHH
Q 012360 422 AYVLLSNFYALEGHWTEVAEARR 444 (465)
Q Consensus 422 ~~~~l~~~~~~~g~~~~a~~~~~ 444 (465)
....++.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 35667777777777777777665
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.81 E-value=15 Score=35.89 Aligned_cols=149 Identities=12% Similarity=0.061 Sum_probs=75.5
Q ss_pred cCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHhhcCCCCCCChhhHHHHHHH
Q 012360 296 YGLGNEALRVFYQMER-------KGIKPNEATFVSVLAACRHSG-----LITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363 (465)
Q Consensus 296 ~~~~~~a~~~~~~m~~-------~g~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 363 (465)
..+.+.|+.+|+.+.+ .| +......+..+|.+.. +.+.|..++.+..+. + .|+.... +...
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g-~~~a~~~--lg~~ 334 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-G-NPDAQYL--LGVL 334 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-C-CchHHHH--HHHH
Confidence 3455555555555544 33 2223444455554422 456677777766643 3 2333322 2222
Q ss_pred HHhc---CCHHHHHHHHHhCCCCCccchHHHHHHHHHh----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCh
Q 012360 364 LSRA---GLLYQAEEFIKIMPAEDKFISYKALLSACIT----YSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHW 436 (465)
Q Consensus 364 ~~~~---g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 436 (465)
+... .+...|.++|...-..+....+-.+..+|.. ..+...|..+++++.+.++............+.. +++
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~ 413 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRY 413 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccc
Confidence 2222 2456777777766655555554444444432 2366777777777777773332222333333333 666
Q ss_pred HHHHHHHHHHHHhcCC
Q 012360 437 TEVAEARRNMKELQTR 452 (465)
Q Consensus 437 ~~a~~~~~~~~~~~~~ 452 (465)
+.+.-.+..+.+.|.+
T Consensus 414 ~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 414 DTALALYLYLAELGYE 429 (552)
T ss_pred cHHHHHHHHHHHhhhh
Confidence 6666666555554443
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.54 E-value=3.3 Score=34.50 Aligned_cols=57 Identities=9% Similarity=-0.002 Sum_probs=32.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
.+..++...|++-++++...+.+...|.+..+|..-+.+....=+..+|..-|.+..
T Consensus 235 Ny~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL 291 (329)
T KOG0545|consen 235 NYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVL 291 (329)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 334444555666666666666666666666666666666555555555555554443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.53 E-value=19 Score=35.60 Aligned_cols=54 Identities=11% Similarity=-0.191 Sum_probs=29.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCC---chhhHHHHHHHhcchhhhhhhhHHHHHHH
Q 012360 56 MSIYNDFSDSGEVLILFKQLIFEGIVA---DKITLVILFSACARLEKLHYGKTVHCYAT 111 (465)
Q Consensus 56 ~~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 111 (465)
++.+.+.+.+++|++.-+.... ..| -.......|..+...|+++.|-...-.|.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 4455666777777776655432 223 12234555666666666666655555444
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.17 E-value=5.8 Score=37.76 Aligned_cols=99 Identities=11% Similarity=0.093 Sum_probs=51.4
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHH
Q 012360 294 ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373 (465)
Q Consensus 294 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 373 (465)
.+.|+++.|.++..+. .+..-|..|.++....+++..|.+.|.+... |..|+-++...|+.+..
T Consensus 648 l~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHH
Confidence 3455666665554432 2445666666666666666666666665542 23444455555555544
Q ss_pred HHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHH
Q 012360 374 EEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANN 411 (465)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 411 (465)
..+-......+ ..|...-++...|++++..+++.+
T Consensus 712 ~~la~~~~~~g---~~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 712 AVLASLAKKQG---KNNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHhhc---ccchHHHHHHHcCCHHHHHHHHHh
Confidence 44333332211 122233345566777766666544
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.96 E-value=0.16 Score=43.98 Aligned_cols=85 Identities=12% Similarity=-0.004 Sum_probs=36.7
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCc-cchHHHHHHHHHhcCChHHHHH
Q 012360 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDK-FISYKALLSACITYSEFDLGKK 407 (465)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~ 407 (465)
..|.++.|++.|...+.. .++....|..-...+.+.++...|++=++.... ++| ..-|-.-..+....|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 345555555555555531 223333333334444455555555544443322 221 1112222222333455555555
Q ss_pred HHHHHHHhC
Q 012360 408 VANNMMKLG 416 (465)
Q Consensus 408 ~~~~~~~~~ 416 (465)
.+..+.+++
T Consensus 204 dl~~a~kld 212 (377)
T KOG1308|consen 204 DLALACKLD 212 (377)
T ss_pred HHHHHHhcc
Confidence 555555544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.93 E-value=8.2 Score=30.42 Aligned_cols=133 Identities=12% Similarity=0.057 Sum_probs=70.1
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCC--ChHHHHHHHHhhC
Q 012360 69 LILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCK--EMDEALRLFDEMG 146 (465)
Q Consensus 69 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~ 146 (465)
.+.++.+.+.+++|+...+..+++.+.+.|++.. +.+++..++-+|.......+-.+.... -..-|.+++.+++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4455556667777777777777777777776543 344444554455444333332222111 1333444444442
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 012360 147 SRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210 (465)
Q Consensus 147 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 210 (465)
..+..++..+...|++-+|.++.+....-+......++.+-.+.++...=..+++-..+
T Consensus 90 -----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 -----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred -----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 13455666777777777777777665333333334445555555554444444443333
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.80 E-value=2.2 Score=36.81 Aligned_cols=61 Identities=10% Similarity=0.051 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
.+.+-.+|.+.++++.|+++.+.++...|+++.-+.-.+..|.+.|.+..|..-++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4556677788888888888888888888888887888888888888888888877766544
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=89.79 E-value=16 Score=33.45 Aligned_cols=181 Identities=17% Similarity=0.169 Sum_probs=105.9
Q ss_pred cCCHHHHHHHHhcCCC----CChhhHHHHHHH-HHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHH
Q 012360 265 CGSLEEALVTFYKTDC----KDVVTWTTMIEG-LANYGLGNEALRVFYQMERKGIKPNE----ATFVSVLAACRHSGLIT 335 (465)
Q Consensus 265 ~~~~~~a~~~~~~~~~----~~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~ 335 (465)
.|+..++.+.+..+.. +....+-.|+.+ .....++..|+++|+...-. .|-. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5777777777776653 234455566554 34456788888888876544 4432 23444455567788888
Q ss_pred HHHHHHHHhhcCCCCCCChhhH-HHHHHHHHhcC---CHHHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHH
Q 012360 336 EGCQLFRRMGGVYRVQPTIEHF-VCLVDLLSRAG---LLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANN 411 (465)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 411 (465)
++..+-.....++...|-..-| ..+..++.+.+ ..+.-..++..|........|..+.+.-...|+.+-|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 8777766666554444543333 23333444433 3444555566665444556788888888888888888888888
Q ss_pred HHHhCCCCchhHHHHHHHH-----hhcCChHHHHHHHHHHHH
Q 012360 412 MMKLGNQSHEAYVLLSNFY-----ALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 412 ~~~~~p~~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~ 448 (465)
+..+...+.. -...+..| .-..+.+++.+.+..+..
T Consensus 283 A~~L~~~~~~-~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 283 ALKLADPDSA-DAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HHHhccCCCc-chHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 8886522211 22222222 233456666666555443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.75 E-value=11 Score=31.60 Aligned_cols=85 Identities=6% Similarity=0.051 Sum_probs=39.7
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHH
Q 012360 51 SWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA 130 (465)
Q Consensus 51 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 130 (465)
.|..-..+|...+++++|...+.+..+- ..-+...|.. ...++.|.-+.+++.+. +.-...++.....|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444455666667777777766665431 1222222211 12233333333333332 122233445555566
Q ss_pred hCCChHHHHHHHHhh
Q 012360 131 KCKEMDEALRLFDEM 145 (465)
Q Consensus 131 ~~g~~~~A~~~~~~~ 145 (465)
..|.++.|-..+++.
T Consensus 103 E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKA 117 (308)
T ss_pred HhCCcchHHHHHHHH
Confidence 666666555555554
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.67 E-value=0.72 Score=26.15 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=24.1
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 421 EAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 421 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
.+++.|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4588999999999999999999998764
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.35 E-value=44 Score=37.99 Aligned_cols=315 Identities=10% Similarity=0.029 Sum_probs=166.3
Q ss_pred HHHHHHHhCCChHHHHHHHHhh-CCCC----CchhHHHHHHHHHhcCChHHHHHHHHH-hhcCChHHHHHHHHHHHHcCC
Q 012360 124 ALLLMYAKCKEMDEALRLFDEM-GSRR----NIVSLNILINGYIDMELVDLAREVFDE-IVDKDIVLWRSMMHGCVKAKQ 197 (465)
Q Consensus 124 ~l~~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 197 (465)
.+..+-.+++.+.+|...++.- +.+. ...-|-.+...|..-++.|....+... ...++ .+ .-+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s--l~-~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS--LY-QQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc--HH-HHHHHHHhhcc
Confidence 4455667788888999888883 1111 112233344477778887777766653 33332 22 23444567899
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHh
Q 012360 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF-VKTALIDMYSKCGSLEEALVTFY 276 (465)
Q Consensus 198 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~ 276 (465)
++.|..-|+.+.+.+ ++...+++-++..-...+.+.......+-..... .+... .++.=+.+-.+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999998753 2235567777766666777776666554443332 22222 23333555577788877777665
Q ss_pred cCCCCChhhHHHH--HHHHHHcCChHH--HHHHHHHHHHCCCCC--------C-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012360 277 KTDCKDVVTWTTM--IEGLANYGLGNE--ALRVFYQMERKGIKP--------N-EATFVSVLAACRHSGLITEGCQLFRR 343 (465)
Q Consensus 277 ~~~~~~~~~~~~l--~~~~~~~~~~~~--a~~~~~~m~~~g~~p--------~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 343 (465)
..+...|... +....+..+-+. -.+..+.+.+.-+.| + ...|..++..+.-. +.+.-.+.+..
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l~~ 1618 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEELKK 1618 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHhhc
Confidence 3444445443 233333222111 112333333221111 1 12333333332211 11111111111
Q ss_pred hhcCCCCCCChhhHHHH---HHHHHhcCCHHHHHH-HHHhCCCC-----CccchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012360 344 MGGVYRVQPTIEHFVCL---VDLLSRAGLLYQAEE-FIKIMPAE-----DKFISYKALLSACITYSEFDLGKKVANNMMK 414 (465)
Q Consensus 344 ~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A~~-~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (465)
.........+..-|..- ...+.+...+=-|.+ .+.....+ .-..+|....+.....|+++.|...+-++.+
T Consensus 1619 ~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e 1698 (2382)
T KOG0890|consen 1619 VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKE 1698 (2382)
T ss_pred cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhh
Confidence 11110111111112111 111222111111111 11111112 2345688888888889999999998888888
Q ss_pred hCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 415 LGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 415 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
.. -+.++...+..+...|+-..|+.++++..+.
T Consensus 1699 ~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1699 SR--LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred cc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 77 3445888899999999999999999987654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.29 E-value=15 Score=32.43 Aligned_cols=134 Identities=16% Similarity=0.257 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc--c----hhhHhHHHHHHHHHHcCCC---CChhHHHHHHHHHHhcCCH
Q 012360 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSS--L----SNLQYGRLVHRFILQNNIT---QDAFVKTALIDMYSKCGSL 268 (465)
Q Consensus 198 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 268 (465)
+++.+.+++.|.+.|+.-+..+|.+....... . .....+..+|+.|++...- ++..++..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44567788889999998888777654433322 2 2355778888888876421 222222222211 11111
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHh
Q 012360 269 EEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEA--TFVSVLAACRHSGL--ITEGCQLFRRM 344 (465)
Q Consensus 269 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~ 344 (465)
+. -.+.+..+|+.+.+.|+..+.. ....++..+..... ..++..+++.+
T Consensus 156 e~---------------------------l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 156 EE---------------------------LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred HH---------------------------HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 11 1355667777777777666432 23333332222222 44677788888
Q ss_pred hcCCCCCCChhhHHHHH
Q 012360 345 GGVYRVQPTIEHFVCLV 361 (465)
Q Consensus 345 ~~~~~~~~~~~~~~~l~ 361 (465)
.+. ++++....|..+.
T Consensus 209 ~~~-~~kik~~~yp~lG 224 (297)
T PF13170_consen 209 KKN-GVKIKYMHYPTLG 224 (297)
T ss_pred HHc-CCccccccccHHH
Confidence 766 7777666665544
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=89.11 E-value=2.4 Score=29.63 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=20.8
Q ss_pred HHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 012360 27 FYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFE 78 (465)
Q Consensus 27 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 78 (465)
.+...|++++|..+.+.+..||...|-+|-. .+.|-.+++..-+.+|..+
T Consensus 48 SLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 3344444444444444444444444443332 2333333333333344333
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.99 E-value=2.8 Score=29.10 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHH
Q 012360 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLV 361 (465)
Q Consensus 301 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 361 (465)
++.+-++.+....+-|++....+.+++|.+.+++..|.++++-++.+.+ .+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHH
Confidence 4555666666667788888888888888888888888888887774322 2344555554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.98 E-value=3.3 Score=33.50 Aligned_cols=74 Identities=15% Similarity=0.047 Sum_probs=50.2
Q ss_pred HhcCCHHHHHHHHHhCCCCC---ccchHHHHHHHHHhcCChHHHHHHHHHHHHhC-C---CCchhHHHHHHHHhhcCChH
Q 012360 365 SRAGLLYQAEEFIKIMPAED---KFISYKALLSACITYSEFDLGKKVANNMMKLG-N---QSHEAYVLLSNFYALEGHWT 437 (465)
Q Consensus 365 ~~~g~~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p---~~~~~~~~l~~~~~~~g~~~ 437 (465)
.+.|+ +.|.+.|-.+...| ++.....|.. |....|.++++.++.+++++. | .++.++..|+..+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 33344 45666666665554 3333444444 444678899999999998865 2 35778899999999999988
Q ss_pred HHH
Q 012360 438 EVA 440 (465)
Q Consensus 438 ~a~ 440 (465)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 774
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=88.68 E-value=0.71 Score=24.47 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=24.8
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 422 AYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 422 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
++..++.++.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4678899999999999999999998765
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.68 E-value=0.64 Score=25.22 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=13.6
Q ss_pred ccchhhHHHHHHHHHhCCChHHHH
Q 012360 116 EYMLNMENALLLMYAKCKEMDEAL 139 (465)
Q Consensus 116 ~~~~~~~~~l~~~~~~~g~~~~A~ 139 (465)
+-+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334555566666666666666554
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.61 E-value=1.1 Score=23.94 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=25.7
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 422 AYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 422 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
+|..++..|...|++++|...+++..+..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 58899999999999999999999887653
|
... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.50 E-value=6.3 Score=27.79 Aligned_cols=60 Identities=13% Similarity=0.198 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHH
Q 012360 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362 (465)
Q Consensus 301 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 362 (465)
+..+-+..+....+-|++......+++|.+.+++..|.++++-++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4455566666667788888888888888888888888888888876433 33336665553
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.48 E-value=3.1 Score=28.95 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHH
Q 012360 66 GEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK 112 (465)
Q Consensus 66 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (465)
-++.+-++.+...++.|++....+.+++|-+.+++..|.++++-...
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34555666666667777777777777888777888878777776653
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.32 E-value=4.4 Score=35.12 Aligned_cols=49 Identities=12% Similarity=0.130 Sum_probs=31.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 012360 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346 (465)
Q Consensus 298 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 346 (465)
++++++.++..=+.-|+-||.+++..+++.+.+.+++.+|.++.-.|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4456666666656666666666666666666666666666666555543
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.07 E-value=2.3 Score=29.91 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=17.9
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHH
Q 012360 70 ILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYAT 111 (465)
Q Consensus 70 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 111 (465)
+-++.+...++.|++....+.+++|.+.+++..|.++++-+.
T Consensus 31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333344444555555555555555555555555554443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=87.97 E-value=4.1 Score=32.25 Aligned_cols=42 Identities=7% Similarity=0.085 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 402 FDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 402 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
+++|...|+++.+.+|.+.. |..-+... ++|-++..++.+.+
T Consensus 96 F~kA~~~FqkAv~~~P~ne~-Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNEL-YRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HH-HHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhcCCCcHH-HHHHHHHH------HhhHHHHHHHHHHH
Confidence 67788888888888898877 55555444 34566666655443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.35 E-value=13 Score=29.39 Aligned_cols=120 Identities=13% Similarity=0.094 Sum_probs=74.0
Q ss_pred HHhcCCHHHHHHHHhcCCCCChhhHHHHH-----HHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHH--HHHHhcCC
Q 012360 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMI-----EGLANYGLGNEALRVFYQMERKGIKPNEA-TFVSVL--AACRHSGL 333 (465)
Q Consensus 262 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~--~~~~~~~~ 333 (465)
+...+..++|+.-|..+.+.+...|-.|. ....+.|+...|...|+++-.....|... -...|- -.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 34567777888888777766555554443 33556778888888888776654344332 222222 22346777
Q ss_pred HHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012360 334 ITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (465)
++......+-+... +.+.....-..|.-+-.+.|++.+|.+.|..+..
T Consensus 148 y~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 77777777766643 3333344445666677778888888888877654
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=87.29 E-value=1.3 Score=27.03 Aligned_cols=31 Identities=6% Similarity=0.284 Sum_probs=25.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.+.-++.+.|++++|.+..+.+++..|++..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4566788999999999999999999999876
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=87.27 E-value=8.2 Score=27.12 Aligned_cols=86 Identities=19% Similarity=0.242 Sum_probs=56.4
Q ss_pred hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012360 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311 (465)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 311 (465)
..++|..|-+.+...+-. ...+-..-+..+...|+|++|..+.+...-||...|.+|... +.|-.+.+...+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 356666666666654421 222222334567778999999999988888888888777553 55667777777777777
Q ss_pred CCCCCCHHHH
Q 012360 312 KGIKPNEATF 321 (465)
Q Consensus 312 ~g~~p~~~~~ 321 (465)
+| .|....|
T Consensus 97 sg-~p~lq~F 105 (115)
T TIGR02508 97 SG-DPRLQTF 105 (115)
T ss_pred CC-CHHHHHH
Confidence 76 4544444
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.20 E-value=2.6 Score=34.95 Aligned_cols=84 Identities=12% Similarity=0.038 Sum_probs=39.7
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCcc-chHHHHHHHHHhcCChHH
Q 012360 328 CRHSGLITEGCQLFRRMGGVYRVQPTI-EHFVCLVDLLSRAGLLYQAEEFIKIMP-AEDKF-ISYKALLSACITYSEFDL 404 (465)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~ 404 (465)
|.....++.|+..|.+... +.|+. ..|..=+.++.+..+++.+..-..+.. -.|+. .....+..++.....+++
T Consensus 20 ~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 4444556666665555552 34444 233344444555555555554333322 13322 222333444445555666
Q ss_pred HHHHHHHHHH
Q 012360 405 GKKVANNMMK 414 (465)
Q Consensus 405 a~~~~~~~~~ 414 (465)
|+..+.++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 6666666544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.16 E-value=31 Score=33.72 Aligned_cols=270 Identities=11% Similarity=-0.007 Sum_probs=154.7
Q ss_pred hHHHHHHHHHhhcC-ChHHHHHHHHH-----HHHcCChhHHHHHHHHHHH-------cCCCCCHHHHHHHHHHhccc---
Q 012360 167 VDLAREVFDEIVDK-DIVLWRSMMHG-----CVKAKQPEEALELFKKMID-------EGVTPDEEVMVSVLSACSSL--- 230 (465)
Q Consensus 167 ~~~a~~~~~~~~~~-~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~--- 230 (465)
...|.++++..... +...-..+... +....+.+.|+.+|+.+.+ .|.++ ....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~---a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPP---AQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCc---cccHHHHHHhcCCCC
Confidence 46778888777544 33333333322 3456689999999998876 55322 344455555443
Q ss_pred -h-hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhc---CCHHHHHHHHhcCCCC-ChhhHHHHHHHHHH----cCChH
Q 012360 231 -S-NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC---GSLEEALVTFYKTDCK-DVVTWTTMIEGLAN----YGLGN 300 (465)
Q Consensus 231 -~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~ 300 (465)
. +...|..++....+.|. |+.... +..++... .+...|.++|...... .+..+-.+..+|.. ..+..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHH
Confidence 2 66779999998888874 333332 33333332 4677899988876543 33333333333322 34788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHH-HHH---HHh----cCCHHH
Q 012360 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL-VDL---LSR----AGLLYQ 372 (465)
Q Consensus 301 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~---~~~----~g~~~~ 372 (465)
.|..++.+.-+.| .|....-...+..+.. +.++.+.-.+..+.+. +..- ..+-... ... ... ..+...
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~-~q~~a~~l~~~~~~~~~~~~~~~~~~~ 457 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEV-AQSNAAYLLDQSEEDLFSRGVISTLER 457 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhH-HhhHHHHHHHhccccccccccccchhH
Confidence 8999999988887 4432222233333444 6666665555555432 2211 1111111 111 111 124556
Q ss_pred HHHHHHhCCCCCccchHHHHHHHHHhc----CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC---ChHHHHHHHHH
Q 012360 373 AEEFIKIMPAEDKFISYKALLSACITY----SEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG---HWTEVAEARRN 445 (465)
Q Consensus 373 A~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~ 445 (465)
+...+.......+......+...|... .+++.|...|..+...+ ......++..+...- .+..|.+++++
T Consensus 458 ~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~ 534 (552)
T KOG1550|consen 458 AFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQ 534 (552)
T ss_pred HHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHH
Confidence 666677666666666666666665432 46888888888888777 445667777765431 15677777776
Q ss_pred HHHh
Q 012360 446 MKEL 449 (465)
Q Consensus 446 ~~~~ 449 (465)
..+.
T Consensus 535 ~~~~ 538 (552)
T KOG1550|consen 535 ASEE 538 (552)
T ss_pred HHhc
Confidence 6553
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=87.12 E-value=5.1 Score=36.92 Aligned_cols=133 Identities=14% Similarity=0.048 Sum_probs=80.4
Q ss_pred HHHHHhcCCHHHHHHHH-hcCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 012360 259 IDMYSKCGSLEEALVTF-YKTD--CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLIT 335 (465)
Q Consensus 259 ~~~~~~~~~~~~a~~~~-~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~ 335 (465)
|.-....|++-.|-+-+ ..+. +.++.........+...|.++.+...+...... +.....+...+++...+.|+++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence 33344567776664433 3222 123333333334456779999999888766543 3445678888999999999999
Q ss_pred HHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHH
Q 012360 336 EGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLS 394 (465)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 394 (465)
.|...-.-|... .+ -+......-.-.--..|-++++...++++.. .|...-|...+.
T Consensus 375 ~a~s~a~~~l~~-ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~ 433 (831)
T PRK15180 375 EALSTAEMMLSN-EI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLS 433 (831)
T ss_pred HHHHHHHHHhcc-cc-CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeec
Confidence 999998888853 22 2333333333334456778889888887643 333334444443
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.12 E-value=8.9 Score=32.83 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=28.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHhcCCHHHH
Q 012360 289 MIEGLANYGLGNEALRVFYQMERKGIKPNEATFV-------SVLAACRHSGLITEG 337 (465)
Q Consensus 289 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-------~l~~~~~~~~~~~~a 337 (465)
+..-..+.+++++|+..+.++...|+..+..+.+ .+...|...|++..-
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchH
Confidence 3444556677777777777777777766665432 333445555544433
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.83 E-value=24 Score=32.01 Aligned_cols=188 Identities=9% Similarity=-0.018 Sum_probs=86.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCC----CCChhHHHHHHHHHH
Q 012360 188 MMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI----TQDAFVKTALIDMYS 263 (465)
Q Consensus 188 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~ 263 (465)
.+.+.-+.|+|+...+........ .++...+..+... +.++++++..+++.....-. ......|........
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 356778899999955555544432 3355555555544 78888888888777655311 111223333333333
Q ss_pred hcCCH---HHHHHHHhcCCCCChhhHHHHHHHHHH-----cCChHHHHHHH---HHHHHC--CCCCCHHHHHHHHHHHHh
Q 012360 264 KCGSL---EEALVTFYKTDCKDVVTWTTMIEGLAN-----YGLGNEALRVF---YQMERK--GIKPNEATFVSVLAACRH 330 (465)
Q Consensus 264 ~~~~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~---~~m~~~--g~~p~~~~~~~l~~~~~~ 330 (465)
+...+ +++.++....... ......++..... .++++.-..++ ..+... .......++..++..+.+
T Consensus 80 ~lq~L~Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk 158 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQN-PQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARK 158 (352)
T ss_pred HHhHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 33333 3333333222111 2222222222111 11221111111 111110 011223455666666666
Q ss_pred cCCHHHHHHHHHHhhcCCCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012360 331 SGLITEGCQLFRRMGGVYRVQ---PTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (465)
.|.++.|...+.++... +.. ..+.....-+..+...|+..+|...++...
T Consensus 159 ~g~~~~A~~~l~~~~~~-~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~ 211 (352)
T PF02259_consen 159 AGNFQLALSALNRLFQL-NPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELL 211 (352)
T ss_pred CCCcHHHHHHHHHHhcc-CCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 67776666666666532 100 123333444555666666666666665543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=86.73 E-value=5.7 Score=30.34 Aligned_cols=81 Identities=14% Similarity=0.182 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcC-----CCCchhhHHHHHHHhcchhh-hhhhhHHHHHHHHhCCccchhhHHHH
Q 012360 52 WNTLMSIYNDFSDSGEVLILFKQLIFEG-----IVADKITLVILFSACARLEK-LHYGKTVHCYATKVGLEYMLNMENAL 125 (465)
Q Consensus 52 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 125 (465)
.|+++.-....+++...+.+++.+.... -..+...|..++.+.++... --.+..+|..+.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4566666666666666666666653211 02355567777777766655 34466667777776677777777777
Q ss_pred HHHHHhC
Q 012360 126 LLMYAKC 132 (465)
Q Consensus 126 ~~~~~~~ 132 (465)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7776654
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.71 E-value=20 Score=31.00 Aligned_cols=59 Identities=10% Similarity=-0.004 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
+......|..+|.+.+|.++.+++++.+|-+...+..|...+...|+--.+.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 45556788899999999999999999999999999999999999999777777776663
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=86.59 E-value=2 Score=22.50 Aligned_cols=30 Identities=13% Similarity=0.280 Sum_probs=24.6
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 012360 400 SEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429 (465)
Q Consensus 400 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 429 (465)
|+.+.|..+|++++...|.++..|..++..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999999889888888777654
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=86.28 E-value=3.4 Score=28.71 Aligned_cols=62 Identities=18% Similarity=0.222 Sum_probs=38.0
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC--CchhHHHHHHHHhhcCChHH-HHHHHHHH
Q 012360 385 KFISYKALLSACITYSEFDLGKKVANNMMKLGNQ--SHEAYVLLSNFYALEGHWTE-VAEARRNM 446 (465)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~-a~~~~~~~ 446 (465)
|...-..+...+...|++++|++.+-++++.+|. +...-..++..+...|.-+. +.++-++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 5566667777777888888888888888776643 35566777777777776543 33443333
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.12 E-value=18 Score=29.83 Aligned_cols=176 Identities=13% Similarity=0.011 Sum_probs=94.4
Q ss_pred chhhHhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh-hHHHH--HHHHHHcCChHHHHHH
Q 012360 230 LSNLQYGRLVHRFILQNNITQD-AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVV-TWTTM--IEGLANYGLGNEALRV 305 (465)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l--~~~~~~~~~~~~a~~~ 305 (465)
.|-++.|.--|.+.... .|+ +.+||.+.-.+...|+++.|.+.|+...+-|+. -|..+ .-++.--|++.-|.+=
T Consensus 78 lGL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHH
Confidence 34444444444444443 343 567888888888889999999999887654432 22222 2233445788888776
Q ss_pred HHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHH-HHHHhhcCCCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHhCC
Q 012360 306 FYQMERKGIKPNE--ATFVSVLAACRHSGLITEGCQ-LFRRMGGVYRVQPTIEHFV-CLVDLLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 306 ~~~m~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~ 381 (465)
+...-... +.|+ ..|..+. ...-++.+|.. +.++.. + .+..-|. .++..|...=..+.+.+-...-.
T Consensus 156 ~~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~---~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a 226 (297)
T COG4785 156 LLAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE---K--SDKEQWGWNIVEFYLGKISEETLMERLKADA 226 (297)
T ss_pred HHHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH---h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhhc
Confidence 66665542 1122 2222222 12335555554 334443 2 2333333 23333332222222222222111
Q ss_pred CCC------ccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 382 AED------KFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 382 ~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
.+. -..+|--+.+-+...|+.++|..+|+-++..+
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 111 23467778888889999999999999888755
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=85.66 E-value=40 Score=33.50 Aligned_cols=21 Identities=29% Similarity=0.224 Sum_probs=11.9
Q ss_pred HHhcCCHHHHHHHHHhCCCCC
Q 012360 364 LSRAGLLYQAEEFIKIMPAED 384 (465)
Q Consensus 364 ~~~~g~~~~A~~~~~~~~~~~ 384 (465)
+...|+++.|.+.++++.--|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 345677777777777765434
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.55 E-value=8.6 Score=31.21 Aligned_cols=73 Identities=15% Similarity=0.123 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHc---CCCCChhHHHHHHHHHHhcCCHHHH
Q 012360 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN---NITQDAFVKTALIDMYSKCGSLEEA 271 (465)
Q Consensus 198 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 271 (465)
-+.|.+.|-.+...+.--+......+ ..|....+.+++..++....+. +-.+++..+.+|+..+.+.|+++.|
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aL-AtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYAL-ATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHH-HHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34566666666655443333333333 3333455666666666666543 2245566666666666666666655
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=85.54 E-value=2.3 Score=28.27 Aligned_cols=47 Identities=9% Similarity=-0.047 Sum_probs=34.9
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchh---HHHHHHHHhhcCChHHHHHHHH
Q 012360 398 TYSEFDLGKKVANNMMKLGNQSHEA---YVLLSNFYALEGHWTEVAEARR 444 (465)
Q Consensus 398 ~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~ 444 (465)
...+.++|+..|+++++..++.+.- +-.|+.+|...|++.+++++--
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677889999999998877665553 4456677888888888777543
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=85.24 E-value=1.8 Score=25.13 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=18.4
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 424 VLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 424 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
..|+.+|...|+.+.|++++++....
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 35677777777777777777776643
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.12 E-value=28 Score=34.47 Aligned_cols=187 Identities=14% Similarity=0.175 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH----------HHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCCh
Q 012360 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDE----------EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDA 252 (465)
Q Consensus 183 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 252 (465)
.+...++..|....+++...++.+.+... ||. ..|...++--.+.||-++|..+.-.+++..-+..+
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 45555666677777777777777777652 221 12333333334556677777666666554322222
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHH
Q 012360 253 FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEAT---FVSVLAACR 329 (465)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~l~~~~~ 329 (465)
.. ||-+|++ |+.|- +-+.|...+..+.|.++|++.-+. .|+..+ +..|+.+-.
T Consensus 279 Dm-------~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFev--eP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 279 DM-------YCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFEV--EPLEYSGINLATLLRAAG 334 (1226)
T ss_pred ce-------eeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhcc--CchhhccccHHHHHHHhh
Confidence 22 2222221 11110 112233445567788888877654 665542 333333322
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHH
Q 012360 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVA 409 (465)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 409 (465)
+ .++...++-. + | -.|-..+.+.|..++..++++-.- ...+-.-++++.+|++.-
T Consensus 335 ~--~Fens~Elq~-I----g--------mkLn~LlgrKG~leklq~YWdV~~----------y~~asVLAnd~~kaiqAa 389 (1226)
T KOG4279|consen 335 E--HFENSLELQQ-I----G--------MKLNSLLGRKGALEKLQEYWDVAT----------YFEASVLANDYQKAIQAA 389 (1226)
T ss_pred h--hccchHHHHH-H----H--------HHHHHHhhccchHHHHHHHHhHHH----------hhhhhhhccCHHHHHHHH
Confidence 2 1221111110 0 1 123344567777777776665432 233344578889999999
Q ss_pred HHHHHhCCCCch
Q 012360 410 NNMMKLGNQSHE 421 (465)
Q Consensus 410 ~~~~~~~p~~~~ 421 (465)
+.|.++.|+..-
T Consensus 390 e~mfKLk~P~WY 401 (1226)
T KOG4279|consen 390 EMMFKLKPPVWY 401 (1226)
T ss_pred HHHhccCCceeh
Confidence 999998877654
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.94 E-value=3.5 Score=38.97 Aligned_cols=95 Identities=19% Similarity=0.167 Sum_probs=62.2
Q ss_pred cCCHHHHHHHHHHhhcCCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHH
Q 012360 331 SGLITEGCQLFRRMGGVYRVQP--TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGK 406 (465)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 406 (465)
.|+...|...+..+... .| .-...-.|.+.+.+.|...+|..++..... ...+.++..+++++....+.+.|+
T Consensus 620 ~gn~~~a~~cl~~a~~~---~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNL---APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHhcc---ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 57777777777776632 33 222334566666677777777776655432 234556777777787788888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHH
Q 012360 407 KVANNMMKLGNQSHEAYVLLSN 428 (465)
Q Consensus 407 ~~~~~~~~~~p~~~~~~~~l~~ 428 (465)
+.|+++.++.|+++.+-+.|..
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHH
Confidence 8888888888877775555443
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.86 E-value=34 Score=32.02 Aligned_cols=104 Identities=13% Similarity=0.089 Sum_probs=71.1
Q ss_pred HHHHHhcCCHHHHHHHHhcCC---CC---------ChhhHHHHHHHHHHcCChHHHHHHHHHHHH-------CCCCCCH-
Q 012360 259 IDMYSKCGSLEEALVTFYKTD---CK---------DVVTWTTMIEGLANYGLGNEALRVFYQMER-------KGIKPNE- 318 (465)
Q Consensus 259 ~~~~~~~~~~~~a~~~~~~~~---~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-------~g~~p~~- 318 (465)
.+.+.-.|++.+|.+++.... .+ .-..||.|...+.+.+.+..+..+|.+..+ .|++|..
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 345566799999999885432 11 123457777777777777777777776653 4655532
Q ss_pred ----------HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHH
Q 012360 319 ----------ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365 (465)
Q Consensus 319 ----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 365 (465)
.+|+ ..-.+...|++-.|.+.|.+... -+..++..|..|.++|.
T Consensus 327 ~tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~--vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 327 FTLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVH--VFHRNPRLWLRLAECCI 380 (696)
T ss_pred eehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHH
Confidence 1232 23456788999999999999986 44667788999988886
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.49 E-value=25 Score=30.03 Aligned_cols=114 Identities=11% Similarity=0.071 Sum_probs=60.8
Q ss_pred CChHHHHHHHHhh-CCCCC-----chhHHHHHHHHHhcCChHHHHHHHHHhhc-------C--ChHHHHHHHHHHHHcCC
Q 012360 133 KEMDEALRLFDEM-GSRRN-----IVSLNILINGYIDMELVDLAREVFDEIVD-------K--DIVLWRSMMHGCVKAKQ 197 (465)
Q Consensus 133 g~~~~A~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~--~~~~~~~l~~~~~~~g~ 197 (465)
.++++|+.-|++. ...+. -.+.-.++....+.|++++..+.+.++.. + +..+.|.++..-..+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 3555666666555 22221 12334456666666666666666665522 1 34456666666555555
Q ss_pred hhHHHHHHHHHHHc-----CCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHc
Q 012360 198 PEEALELFKKMIDE-----GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246 (465)
Q Consensus 198 ~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 246 (465)
.+.-..+|+.-++. +-+.=..|-..+-..|...+.+.+..++++++..+
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~S 174 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQS 174 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHH
Confidence 55555555443221 00111112244556677778888888888777654
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=84.27 E-value=38 Score=32.00 Aligned_cols=175 Identities=13% Similarity=0.116 Sum_probs=117.0
Q ss_pred ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHH
Q 012360 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260 (465)
Q Consensus 181 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 260 (465)
|....-+++..+..+-.+.-+..+-.+|+.-| .+...|..++.+|... ..++-..+++++.+..+. +...-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 55566778888888888888888999998854 4667888888888877 667788889988887543 3444455555
Q ss_pred HHHhcCCHHHHHHHHhcCCCC------Ch---hhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 012360 261 MYSKCGSLEEALVTFYKTDCK------DV---VTWTTMIEGLANYGLGNEALRVFYQMERK-GIKPNEATFVSVLAACRH 330 (465)
Q Consensus 261 ~~~~~~~~~~a~~~~~~~~~~------~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~ 330 (465)
.|-+ ++.+.+..+|.++... +. ..|..+...- ..+.+....+..++... |..--...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5555 8888888888765421 11 1455554321 34566666666666543 333344556666677888
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHH
Q 012360 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364 (465)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (465)
..++++|++++..+.+. -..|...-..++.-+
T Consensus 218 ~eN~~eai~Ilk~il~~--d~k~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEH--DEKDVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhh--cchhhhHHHHHHHHH
Confidence 89999999999988853 344555555555443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=84.21 E-value=51 Score=33.47 Aligned_cols=215 Identities=15% Similarity=0.018 Sum_probs=103.7
Q ss_pred ccchhhHhHHHHHHHHHHcCCCCChh-------HHHHHH-HHHHhcCCHHHHHHHHhcCC--------CCChhhHHHHHH
Q 012360 228 SSLSNLQYGRLVHRFILQNNITQDAF-------VKTALI-DMYSKCGSLEEALVTFYKTD--------CKDVVTWTTMIE 291 (465)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~l~~ 291 (465)
....++++|..++.++...-..|+.. .++.+- ......|++++|.++.+... .+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34566667766666655432121111 222221 12234577777776665432 134556677777
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHH--HHHHhcCC--HHHHHHHHHHhhcCCCCC-----CChhhHHH
Q 012360 292 GLANYGLGNEALRVFYQMERKGIKPNEAT---FVSVL--AACRHSGL--ITEGCQLFRRMGGVYRVQ-----PTIEHFVC 359 (465)
Q Consensus 292 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~l~--~~~~~~~~--~~~a~~~~~~~~~~~~~~-----~~~~~~~~ 359 (465)
+..-.|++++|..+.....+.--.-+... +..+. ..+...|. +.+....|......+... +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 77778888888877766554311222222 22222 33455663 333333333333221111 11233334
Q ss_pred HHHHHHhcCCHHHHHHH----HHhCCC-CCc--cc--hHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC-chh-HH----
Q 012360 360 LVDLLSRAGLLYQAEEF----IKIMPA-EDK--FI--SYKALLSACITYSEFDLGKKVANNMMKLGNQS-HEA-YV---- 424 (465)
Q Consensus 360 l~~~~~~~g~~~~A~~~----~~~~~~-~~~--~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~-~~---- 424 (465)
+..++.+ .+.+..- +.--.. .|. .. .+..|+......|+.++|...++++..+.-.+ +.+ |.
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444444 3332222 211111 111 11 12356677778899999999888888754221 221 21
Q ss_pred -HHHHHHhhcCChHHHHHHHHH
Q 012360 425 -LLSNFYALEGHWTEVAEARRN 445 (465)
Q Consensus 425 -~l~~~~~~~g~~~~a~~~~~~ 445 (465)
.-...-..+|+.+++.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 112223356788777776654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=83.89 E-value=17 Score=27.85 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=8.3
Q ss_pred HhcCCHHHHHHHHHHhh
Q 012360 329 RHSGLITEGCQLFRRMG 345 (465)
Q Consensus 329 ~~~~~~~~a~~~~~~~~ 345 (465)
...|++++|.++|+.+.
T Consensus 55 i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 55 IARGNYDEAARILRELL 71 (153)
T ss_pred HHcCCHHHHHHHHHhhh
Confidence 34445555555555444
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=83.29 E-value=3.1 Score=24.17 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=17.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcC
Q 012360 188 MMHGCVKAKQPEEALELFKKMIDEG 212 (465)
Q Consensus 188 l~~~~~~~g~~~~a~~~~~~~~~~~ 212 (465)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5566777777777777777776543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion) | Back alignment and domain information |
|---|
Probab=82.92 E-value=15 Score=26.28 Aligned_cols=79 Identities=15% Similarity=0.189 Sum_probs=44.3
Q ss_pred hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012360 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311 (465)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 311 (465)
..++|..|.+.+...+. ....+--.-+..+...|+|++|+..=.....||...|.+|.. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45677777777776653 222233334455667778887755445555667777665543 356667777777776665
Q ss_pred CC
Q 012360 312 KG 313 (465)
Q Consensus 312 ~g 313 (465)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 54
|
The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=82.44 E-value=16 Score=27.51 Aligned_cols=71 Identities=7% Similarity=0.009 Sum_probs=42.7
Q ss_pred CCChhhHHHHHHHHHhcCCHH---HHHHHHHhCCC--CC--ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 351 QPTIEHFVCLVDLLSRAGLLY---QAEEFIKIMPA--ED--KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 351 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~--~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.++..+-..+..++.+..+.+ +-+.+++++.. .| ......-|.-++.+.++++.+.++.+..++..|++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 355555556666666655433 34445555542 22 2233444555677788888888888888888777765
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.46 E-value=8.2 Score=31.69 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=7.7
Q ss_pred HHHHHHHhCCChHHHHHHH
Q 012360 124 ALLLMYAKCKEMDEALRLF 142 (465)
Q Consensus 124 ~l~~~~~~~g~~~~A~~~~ 142 (465)
.++..++-.|++++|..-+
T Consensus 40 flfqLlcvaGdw~kAl~Ql 58 (273)
T COG4455 40 FLFQLLCVAGDWEKALAQL 58 (273)
T ss_pred HHHHHHhhcchHHHHHHHH
Confidence 3344444444444443333
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=81.15 E-value=6.5 Score=26.23 Aligned_cols=46 Identities=13% Similarity=0.054 Sum_probs=24.5
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHH
Q 012360 295 NYGLGNEALRVFYQMERKGIKPNE--ATFVSVLAACRHSGLITEGCQL 340 (465)
Q Consensus 295 ~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~ 340 (465)
..++.++|+..|....+.-..|.. .++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666665554222221 3555566666666666655543
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=80.70 E-value=3.8 Score=32.43 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCC----hHHHHHHHHHH
Q 012360 402 FDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH----WTEVAEARRNM 446 (465)
Q Consensus 402 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~~ 446 (465)
+++|+.-|++++.++|+...++..++.+|...+. ..+|..+|++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 5677888888888999999999999999987653 33455555544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.8 bits (156), Expect = 3e-11
Identities = 35/272 (12%), Positives = 71/272 (26%), Gaps = 17/272 (6%)
Query: 201 ALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260
A L +P EE + +L +L + Q ++ A
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 261 MYSKCGSLEEALVTFY-------KTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313
L A K + + ++ G A G E + V + ++ G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 314 IKPNEATFVSVLAACRHSGLITEGCQ-LFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372
+ P+ ++ + L + +M + V LS
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVL----LSEEDRATV 251
Query: 373 AEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL 432
+ K+ P ++ + K + KL L +
Sbjct: 252 LKAVHKVKPTFSLPPQLPPPVNTSKLLRDV-YAKDGRVSYPKLHLPLKTLQCLFEKQLHM 310
Query: 433 EGHWT----EVAEARRNMKELQTRKKPGNSII 460
E V + KE++ +K ++
Sbjct: 311 ELASRVCVVSVEKPTLPSKEVKHARKTLKTLR 342
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 50.6 bits (119), Expect = 1e-06
Identities = 12/96 (12%), Positives = 30/96 (31%), Gaps = 7/96 (7%)
Query: 139 LRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDK-------DIVLWRSMMHG 191
+ L + + + LA + + + ++ ++M G
Sbjct: 115 SGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLG 174
Query: 192 CVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSAC 227
+ +E + + + D G+TPD + L
Sbjct: 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCM 210
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 47.9 bits (112), Expect = 6e-06
Identities = 16/144 (11%), Positives = 48/144 (33%), Gaps = 7/144 (4%)
Query: 79 GIVADKITLVILFSACARLEKLHYG-KTVHCYATKVGLEYMLNME--NALLLMYAKCKEM 135
+ + L+ F C ++L + + + +L ++ NA++L +A+
Sbjct: 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAF 181
Query: 136 DEALRLFDEM---GSRRNIVSLNILINGYIDME-LVDLAREVFDEIVDKDIVLWRSMMHG 191
E + + + G +++S + + +++ + + L
Sbjct: 182 KELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAV 241
Query: 192 CVKAKQPEEALELFKKMIDEGVTP 215
+ + L+ K+ P
Sbjct: 242 LLSEEDRATVLKAVHKVKPTFSLP 265
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 3e-06
Identities = 56/334 (16%), Positives = 109/334 (32%), Gaps = 83/334 (24%)
Query: 169 LAREV--FDEIVDK--DIVLWRSMMHGCVKAKQPEEALELFKKM---IDEGVTPDEEVMV 221
+A +V ++ K + W ++ PE LE+ +K+ ID T +
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNL--KNCN--SPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 222 SVLSACSS--------------------LSNLQYGRLVHRFILQNNI---TQDAFVKTAL 258
++ S L N+Q + + F L I T+ V L
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 259 IDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY-GLGNEALRVFYQMERKGIKPN 317
+ SL+ +T + K + L Y + L E P
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSL---------LLKYLDCRPQDLPR----EVLTTNP- 327
Query: 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV-CLVDLLSRAGLLYQAEEF 376
+S++A GL T ++ + ++ IE + L R ++
Sbjct: 328 --RRLSIIAESIRDGLAT--WDNWKHV-NCDKLTTIIESSLNVLEPAEYRK--MFDR--- 377
Query: 377 IKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLL-----SNFYA 431
+ + P I L + + + + +++M + N+ H+ Y L+ + +
Sbjct: 378 LSVFP-PSAHIPTILL---SLIWFD-----VIKSDVMVVVNKLHK-YSLVEKQPKESTIS 427
Query: 432 LEGHWTEVAEARRNMKELQTRKKPGNSIIDLKHY 465
+ + E+ N L SI+D HY
Sbjct: 428 IPSIYLELKVKLENEYALH------RSIVD--HY 453
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 8e-05
Identities = 54/330 (16%), Positives = 99/330 (30%), Gaps = 104/330 (31%)
Query: 123 NALLLMYAKCKEMDEALRLF--DEMGSRRNIVSLNILINGYIDMELVDLAREV------- 173
+ L +D DE ++L+ Y+D DL REV
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDE--------VKSLLLK-YLDCRPQDLPREVLTTNPRR 329
Query: 174 ---FDEIVDKDIVLW-----------RSMMHGCVKAKQPEEALELFKKM--------IDE 211
E + + W +++ + +P E ++F ++ I
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 212 GV-------TPDEEVMVSVLSAC--SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262
+ +VMV V++ SL Q +I + +K L + Y
Sbjct: 390 ILLSLIWFDVIKSDVMV-VVNKLHKYSLVEKQPKESTISI---PSIYLE--LKVKLENEY 443
Query: 263 SKCGSLEEALVTFYK-TDCKDVVTWTTMIEGLANY-----G--LGN-------EALRVFY 307
+L ++V Y D + + L Y G L N R+ +
Sbjct: 444 ----ALHRSIVDHYNIPKTFD--SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Query: 308 Q----MERK----GIKPN-EATFVSVLAACR-HSGLITEGCQLFRRMGGVYRVQPTIEHF 357
+E+K N + ++ L + + I + + R+ I F
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN------AILDF 551
Query: 358 V------CL----VDLLSRAGLLYQAEEFI 377
+ + DLL A L +E I
Sbjct: 552 LPKIEENLICSKYTDLLRIA--LMAEDEAI 579
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 465 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.85 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.85 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.83 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.83 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.82 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.82 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.81 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.8 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.76 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.73 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.73 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.69 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.68 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.68 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.67 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.67 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.65 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.65 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.65 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.65 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.65 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.64 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.64 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.62 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.62 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.62 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.62 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.62 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.61 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.6 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.6 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.6 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.59 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.58 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.56 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.54 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.54 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.52 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.51 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.51 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.49 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.49 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.49 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.47 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.46 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.46 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.42 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.42 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.41 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.41 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.41 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.35 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.35 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.32 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.27 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.26 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.26 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.25 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.25 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.25 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.23 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.22 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.22 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.21 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.18 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.17 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.17 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.16 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.15 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.12 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.12 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.12 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.07 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.06 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.06 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.05 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.05 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.04 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.03 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.03 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.02 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.01 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.0 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.99 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.98 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.98 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.97 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.96 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.96 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.95 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.95 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.92 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.92 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.91 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.91 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.9 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.89 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.89 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.88 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.86 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.86 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.83 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.83 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.82 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.82 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.81 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.79 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.76 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.75 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.75 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.75 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.74 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.74 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.74 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.73 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.72 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.71 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.7 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.7 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.7 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.69 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.69 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.68 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.67 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.63 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.63 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.62 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.61 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.61 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.59 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.59 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.58 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.55 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.53 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.51 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.5 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.5 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.49 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.49 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.49 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.48 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.48 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.48 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.47 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.47 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.46 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.46 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.45 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.44 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.44 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.44 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.43 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.42 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.41 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.41 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.3 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.3 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.3 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.29 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.29 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.29 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.24 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.22 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.2 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.18 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.11 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.11 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.11 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.05 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.04 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.95 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.95 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.94 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.92 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.87 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.86 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.84 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.77 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.69 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.65 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.62 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.61 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.55 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.55 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.33 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.33 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.18 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.14 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.1 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.09 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 97.08 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.96 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.86 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.7 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.67 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.61 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.61 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.57 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.17 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.13 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.01 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.92 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.81 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.74 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.73 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.44 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.35 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.3 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.16 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 95.05 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.89 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.18 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 94.17 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.82 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.29 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.23 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.07 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 93.03 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 92.67 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.29 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.34 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 91.2 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 90.93 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 90.57 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 90.05 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.98 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 89.49 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.36 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 88.78 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.78 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.39 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.3 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 87.72 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 87.44 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.95 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.88 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.3 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 83.66 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 81.82 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 81.17 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 80.64 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-41 Score=325.91 Aligned_cols=429 Identities=12% Similarity=0.008 Sum_probs=376.7
Q ss_pred CCcchhhhHHHHHHHccCChHHHHHHhccCC--CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHH
Q 012360 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFS 92 (465)
Q Consensus 15 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 92 (465)
.+++..|+.++..|.+.|++++|+.+|+++. .|+..++..++.+|.+.|++++|..+|+++... +++..+++.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHH
Confidence 3678889999999999999999999999986 567788999999999999999999999988653 678889999999
Q ss_pred HhcchhhhhhhhHHHHHHHHh---------------CCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCC-chhHH
Q 012360 93 ACARLEKLHYGKTVHCYATKV---------------GLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRRN-IVSLN 155 (465)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~ 155 (465)
++.+.|++++|.++|+++... +.+.+..+++.++.+|.+.|++++|.++|+++ ...|+ ..++.
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 238 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD 238 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHH
Confidence 999999999999999853221 22446789999999999999999999999998 33443 23333
Q ss_pred HH--------------------------------------HHHHHhcCChHHHHHHHHHhhc--CChHHHHHHHHHHHHc
Q 012360 156 IL--------------------------------------INGYIDMELVDLAREVFDEIVD--KDIVLWRSMMHGCVKA 195 (465)
Q Consensus 156 ~l--------------------------------------~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~ 195 (465)
.+ +..|.+.|++++|.++|+++.. ++..+++.++..|.+.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHT
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Confidence 22 4556688999999999999966 7999999999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 012360 196 KQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF 275 (465)
Q Consensus 196 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 275 (465)
|++++|.++|+++.+.+. .+..++..++.++.+.|++++|..+++.+.+.. +.+..++..++..|.+.|++++|.++|
T Consensus 319 g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 319 SRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 999999999999998753 377789999999999999999999999998654 567889999999999999999999999
Q ss_pred hcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC
Q 012360 276 YKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352 (465)
Q Consensus 276 ~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 352 (465)
+++. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+.
T Consensus 397 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 473 (597)
T 2xpi_A 397 SKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQY 473 (597)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 9864 3467899999999999999999999999999873 346789999999999999999999999999863 345
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-------CCc--cchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhH
Q 012360 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-------EDK--FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423 (465)
Q Consensus 353 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 423 (465)
+..+|..++..|.+.|++++|.++|+++.. .|+ ..+|..++.+|.+.|++++|++.++++.+.+|+++.+|
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 788999999999999999999999998732 454 57899999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 424 VLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 424 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
..++.+|.+.|++++|.++++++.+..
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999987753
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=316.59 Aligned_cols=425 Identities=9% Similarity=-0.026 Sum_probs=367.7
Q ss_pred ccchhHHHHHhccCCcchhhhHHHHHHHccCChHHHHHHhccCC--CCCcccHHHHHHHHHhcCChhHHHHHHHHHHH-c
Q 012360 2 GKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIF-E 78 (465)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~ 78 (465)
|..+++.|.+ ..|+..++..++..|.+.|++++|+.+|+.+. .++..+++.++.+|.+.|++++|+++|+++.. .
T Consensus 103 A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 180 (597)
T 2xpi_A 103 AAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFR 180 (597)
T ss_dssp HHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC
T ss_pred HHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcc
Confidence 4567778874 45788999999999999999999999999984 67889999999999999999999999995321 1
Q ss_pred --------------CCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhH----------------------
Q 012360 79 --------------GIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNME---------------------- 122 (465)
Q Consensus 79 --------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---------------------- 122 (465)
+.+++..+|..++.++.+.|++++|.++|+++.+.+.. +...+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~ 259 (597)
T 2xpi_A 181 KDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLN 259 (597)
T ss_dssp ----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSC
T ss_pred ccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcC
Confidence 22345789999999999999999999999999987522 22222
Q ss_pred ----------------HHHHHHHHhCCChHHHHHHHHhh-CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhc---CCh
Q 012360 123 ----------------NALLLMYAKCKEMDEALRLFDEM-GSRRNIVSLNILINGYIDMELVDLAREVFDEIVD---KDI 182 (465)
Q Consensus 123 ----------------~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~ 182 (465)
+.++..|.+.|++++|.++|+++ ..+++..+|+.++.++.+.|++++|.++|+++.. .+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 339 (597)
T 2xpi_A 260 YSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNL 339 (597)
T ss_dssp THHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCC
T ss_pred CcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccH
Confidence 22355666789999999999999 4457899999999999999999999999999853 367
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 012360 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262 (465)
Q Consensus 183 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (465)
.+++.++.++.+.|++++|..+++++.+.. +.+..++..+...|.+.|++++|..+|+++.+.. +.+..+++.++.+|
T Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 417 (597)
T 2xpi_A 340 DVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSF 417 (597)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 889999999999999999999999998753 4578899999999999999999999999998864 45678999999999
Q ss_pred HhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012360 263 SKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ 339 (465)
Q Consensus 263 ~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 339 (465)
.+.|++++|.++|+++. +.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.+
T Consensus 418 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 496 (597)
T 2xpi_A 418 AIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAIN 496 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999998754 4578899999999999999999999999998863 4468899999999999999999999
Q ss_pred HHHHhhcCC---CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 012360 340 LFRRMGGVY---RVQPT--IEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNM 412 (465)
Q Consensus 340 ~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 412 (465)
+|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++.. +++..+|..++.+|.+.|++++|.+.++++
T Consensus 497 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999997531 33566 78999999999999999999999998754 347889999999999999999999999999
Q ss_pred HHhCCCCchhHHHHHHHHhh
Q 012360 413 MKLGNQSHEAYVLLSNFYAL 432 (465)
Q Consensus 413 ~~~~p~~~~~~~~l~~~~~~ 432 (465)
++.+|+++..+..++.+|..
T Consensus 577 l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 577 LAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHCTTCHHHHHHHHHTTC-
T ss_pred HhcCCCChHHHHHHHHHHhc
Confidence 99999999999999887753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-29 Score=233.37 Aligned_cols=372 Identities=10% Similarity=0.039 Sum_probs=294.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCCh
Q 012360 56 MSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM 135 (465)
Q Consensus 56 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 135 (465)
...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+..++.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 445667778888888887776653 2233445555666677778888887777777654 45666777788888888888
Q ss_pred HHHHHHHHhh-CCCCC-chhHHHHHHHHHhcCChHHHHHHHHHhhc--C-ChHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 012360 136 DEALRLFDEM-GSRRN-IVSLNILINGYIDMELVDLAREVFDEIVD--K-DIVLWRSMMHGCVKAKQPEEALELFKKMID 210 (465)
Q Consensus 136 ~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 210 (465)
++|...|+++ ...|+ ..+|..+..++...|++++|.+.|+++.. | +...+..+...+...|++++|.+.|+++.+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888888777 33444 44677788888888888888888877743 3 445677777888888888888888888887
Q ss_pred cCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHH
Q 012360 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWT 287 (465)
Q Consensus 211 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~ 287 (465)
.. +.+..++..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...|++.. +.+..++.
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 53 2346677788888888888888888888888765 4456778888888888899999888887654 34577888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHh
Q 012360 288 TMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR 366 (465)
Q Consensus 288 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 366 (465)
.+...+...|++++|...|+++.+. .| +..++..+..++.+.|++++|+..++++.+ ..+.+..++..+...+.+
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHH
Confidence 8999999999999999999999887 44 467889999999999999999999999986 345678899999999999
Q ss_pred cCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCC
Q 012360 367 AGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435 (465)
Q Consensus 367 ~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 435 (465)
.|++++|.+.++++.. .| +..++..++..+.+.|++++|+..++++++..|+++..|..++..+...|+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999998765 34 567899999999999999999999999999999999999999998887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-28 Score=224.69 Aligned_cols=352 Identities=12% Similarity=0.048 Sum_probs=307.0
Q ss_pred HHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh--CCCCCchhHHHHHHHHHhcCChH
Q 012360 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM--GSRRNIVSLNILINGYIDMELVD 168 (465)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 168 (465)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++.. ..+.+..+|..+...+.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 455677899999999999998874 445566778888899999999999999887 43556789999999999999999
Q ss_pred HHHHHHHHhhc--C-ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHH
Q 012360 169 LAREVFDEIVD--K-DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245 (465)
Q Consensus 169 ~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (465)
+|.+.|+++.. | +..+|..+..++.+.|++++|.+.|+++.+... .+...+..+...+...|++++|...++++.+
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999843 4 566899999999999999999999999998632 2345566777888899999999999999988
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHH
Q 012360 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATF 321 (465)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~ 321 (465)
.. +.+..++..+..++...|++++|...|+++. +.+...|..+...+...|++++|...+++..+. .| +..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHH
Confidence 74 4457889999999999999999999998865 345678899999999999999999999999876 45 46788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhc
Q 012360 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITY 399 (465)
Q Consensus 322 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~ 399 (465)
..+..++...|++++|+..|+++.+. .+.+..++..+..++.+.|++++|.+.++++.. +++..++..++..+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 99999999999999999999999863 244677899999999999999999999998754 44778899999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 400 SEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 400 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
|++++|+..++++++..|+++.++..++.++.+.|++++|...++++.+.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999988764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=234.53 Aligned_cols=184 Identities=15% Similarity=0.184 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc---------hhhHhHHHHHHHHHHcCCCCChh
Q 012360 183 VLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSL---------SNLQYGRLVHRFILQNNITQDAF 253 (465)
Q Consensus 183 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~ 253 (465)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++. +.++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 457888999999999999999999999999999999999999998754 34788999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 012360 254 VKTALIDMYSKCGSLEEALVTFYKTD----CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329 (465)
Q Consensus 254 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 329 (465)
+|+.++.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999998765 57999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhc
Q 012360 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA 367 (465)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 367 (465)
+.|+.++|.+++++|.+. +..|+..||+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999876 8899999999999888753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-29 Score=231.76 Aligned_cols=182 Identities=12% Similarity=0.120 Sum_probs=115.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchh---------hhhhhhHHHHHHHHhCCccchhh
Q 012360 51 SWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLE---------KLHYGKTVHCYATKVGLEYMLNM 121 (465)
Q Consensus 51 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~ 121 (465)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+ .++.|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 467777777777888888888887777777777777877777776543 35666677777777777777777
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhh---CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCCh
Q 012360 122 ENALLLMYAKCKEMDEALRLFDEM---GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQP 198 (465)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 198 (465)
|+.+|.+|++.|++++|.++|++| |+.||.. +|+.+|.+|++.|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~-------------------------------tyn~lI~~~~~~g~~ 156 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR-------------------------------SYGPALFGFCRKGDA 156 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH-------------------------------HHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc-------------------------------eehHHHHHHHHCCCH
Confidence 777777777777777777777666 4445544 455555555555555
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 012360 199 EEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYS 263 (465)
Q Consensus 199 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 263 (465)
++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++++|.+.|..|+..||+.++..+.
T Consensus 157 ~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 157 DKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555555555555555444
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-26 Score=218.10 Aligned_cols=262 Identities=9% Similarity=-0.069 Sum_probs=182.4
Q ss_pred HHHHHHHHHHHH---cCChhHHHHHHHHHHH-----cCCCC--------CHHHHHHHHHHhccchhhHhHHHHHHHHHHc
Q 012360 183 VLWRSMMHGCVK---AKQPEEALELFKKMID-----EGVTP--------DEEVMVSVLSACSSLSNLQYGRLVHRFILQN 246 (465)
Q Consensus 183 ~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~~~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 246 (465)
..+......+.. .|++++|...|+++.+ ....| +..++..+...+...|++++|...++.+.+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 266 (514)
T 2gw1_A 187 DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL 266 (514)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 334444444443 6777788777777766 21111 2345566666677777888888887777776
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 012360 247 NITQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVS 323 (465)
Q Consensus 247 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 323 (465)
... ..++..+..++...|++++|...++++. +.+...+..+...+...|++++|...+++..+.. +.+...+..
T Consensus 267 ~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 343 (514)
T 2gw1_A 267 FPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQ 343 (514)
T ss_dssp CCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHH
T ss_pred Ccc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHH
Confidence 432 6677777777777888877777776644 2355677777777888888888888888877663 224456777
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-c------cchHHHHHHH
Q 012360 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-K------FISYKALLSA 395 (465)
Q Consensus 324 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~------~~~~~~l~~~ 395 (465)
+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++.. .| + ...+..++..
T Consensus 344 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 344 LACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp HHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 777777888888888888877742 233566777777788888888888887776543 11 1 2267777777
Q ss_pred HHh---cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 396 CIT---YSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 396 ~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
+.. .|++++|+..++++++..|+++.++..++.++.+.|++++|...+++..+.
T Consensus 422 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 422 LTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 777 788888888888888888887777888888888888888888888777654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-26 Score=216.33 Aligned_cols=403 Identities=12% Similarity=-0.023 Sum_probs=317.9
Q ss_pred chhhhHHHHHHHccCChHHHHHHhccCC--CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhc
Q 012360 18 IYVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95 (465)
Q Consensus 18 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 95 (465)
...+..+...+.+.|++++|+..|+++. .|+..+|..+..++.+.|++++|+..|+++.+.+ +.+..++..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 4456777888899999999999999876 5788889999999999999999999999998864 345568888899999
Q ss_pred chhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHH---------------------------------
Q 012360 96 RLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLF--------------------------------- 142 (465)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~--------------------------------- 142 (465)
..|++++|...|+.+.+.+. ++......++..+........+.+.+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999988763 33333333333333322222211111
Q ss_pred -----HhhCCC--------C-CchhHHHHHHHHHh---cCChHHHHHHHHHhhc----------------C-ChHHHHHH
Q 012360 143 -----DEMGSR--------R-NIVSLNILINGYID---MELVDLAREVFDEIVD----------------K-DIVLWRSM 188 (465)
Q Consensus 143 -----~~~~~~--------~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~----------------~-~~~~~~~l 188 (465)
...... | +...+......+.. .|++++|...|+++.. | +..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 111101 1 13334444444444 8999999999998855 2 45678888
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 012360 189 MHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268 (465)
Q Consensus 189 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 268 (465)
...+...|++++|...++++.+... +...+..+...+...|++++|...++.+.+.. +.+..++..+..++...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 9999999999999999999998643 37788888999999999999999999998875 45677889999999999999
Q ss_pred HHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 269 EEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 269 ~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
++|...|++.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999998754 3467789999999999999999999999998762 2345788889999999999999999999997
Q ss_pred cCCCCCCC----hhhHHHHHHHHHh---cCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 346 GVYRVQPT----IEHFVCLVDLLSR---AGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 346 ~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
....-.++ ...+..+...+.. .|++++|...++.+.. +.+..++..++..+...|++++|...++++++..
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 53211222 3388899999999 9999999999998754 3366788999999999999999999999999999
Q ss_pred CCCchhHHHH
Q 012360 417 NQSHEAYVLL 426 (465)
Q Consensus 417 p~~~~~~~~l 426 (465)
|.++..+..+
T Consensus 480 ~~~~~~~~~~ 489 (514)
T 2gw1_A 480 RTMEEKLQAI 489 (514)
T ss_dssp SSHHHHHHHH
T ss_pred cccHHHHHHH
Confidence 9988866655
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.7e-25 Score=210.36 Aligned_cols=422 Identities=11% Similarity=0.023 Sum_probs=223.8
Q ss_pred cchhhhHHHHHHHccCChHHHHHHhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 012360 17 DIYVGNSLIHFYGRMALFTDARVLFDKMP---FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSA 93 (465)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 93 (465)
....+..+...+.+.|++++|+..|+.+. +.+..+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+...
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 34566677777777888888888887765 3456677777788888888888888888877654 3345567777777
Q ss_pred hcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCC----CchhHHHHHHHHHhcCChH
Q 012360 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRR----NIVSLNILINGYIDMELVD 168 (465)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~ 168 (465)
+...|++++|...++ .... .|+. ....+..+...+....|...++.+ ...| ........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 777888888887775 3322 1211 112233334444456666666665 1111 1111222223333333333
Q ss_pred HHHHHHHHhhcCChH---HHHHHHHHHH--------HcCChhHHHHHHHHHHHcCCCCC------HHHHHHHHHHhccch
Q 012360 169 LAREVFDEIVDKDIV---LWRSMMHGCV--------KAKQPEEALELFKKMIDEGVTPD------EEVMVSVLSACSSLS 231 (465)
Q Consensus 169 ~a~~~~~~~~~~~~~---~~~~l~~~~~--------~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~ 231 (465)
.+...+......+.. ....+...+. ..|++++|..+++++.+...... ..++..+...+...|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 333333222221111 1222222111 11355556666665554321100 112334444455555
Q ss_pred hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 012360 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQ 308 (465)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 308 (465)
++++|...++.+.+.. |+...+..+..++...|++++|...|+++. +.+..++..+...+...|++++|...+++
T Consensus 258 ~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 258 NLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 6666666666665543 335555555666666666666666665443 23445566666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC---
Q 012360 309 MERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED--- 384 (465)
Q Consensus 309 m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~--- 384 (465)
..+.. +.+...+..+..++...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++.. .|
T Consensus 336 a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 336 AQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 65542 112345555666666666666666666666542 233445555666666666666666666655432 11
Q ss_pred ----ccchHHHHHHHHHhc----------CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 385 ----KFISYKALLSACITY----------SEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 385 ----~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
....+......+... |++++|+..++++++..|+++.++..++.+|.+.|++++|...+++..+.
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 111133334445555 66666666666666666666666666666666666666666666655443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-24 Score=199.36 Aligned_cols=320 Identities=13% Similarity=0.116 Sum_probs=206.9
Q ss_pred chhhHHHHHHHHHhCCChHHHHHHHHhh--CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhc---CChHHHHHHHHHH
Q 012360 118 MLNMENALLLMYAKCKEMDEALRLFDEM--GSRRNIVSLNILINGYIDMELVDLAREVFDEIVD---KDIVLWRSMMHGC 192 (465)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 192 (465)
+...+..+...+.+.|++++|..+|+++ ..+.+..++..+..++...|++++|...|+++.+ .+..++..+...|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 3444555555555555555555555554 1123344555555555555555555555555532 2345555666666
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCH----HHHHHH------------HHHhccchhhHhHHHHHHHHHHcCCCCChhHHH
Q 012360 193 VKAKQPEEALELFKKMIDEGVTPDE----EVMVSV------------LSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256 (465)
Q Consensus 193 ~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 256 (465)
.+.|++++|...|+++.+. .|+. ..+..+ ...+...|++++|...++.+.+.. +.+..++.
T Consensus 105 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 181 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRE 181 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 6666666666666666553 2322 222222 233566677777777777766653 34556666
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH--------
Q 012360 257 ALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSV-------- 324 (465)
Q Consensus 257 ~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l-------- 324 (465)
.+..+|...|++++|...|+++. +.+..+|..++..|...|++++|...|+++.+. .|+ ...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHH
Confidence 77777777777777777776654 345667777777777778888888888777765 343 3333333
Q ss_pred ----HHHHHhcCCHHHHHHHHHHhhcCCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHH
Q 012360 325 ----LAACRHSGLITEGCQLFRRMGGVYRVQPT-----IEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALL 393 (465)
Q Consensus 325 ----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~ 393 (465)
...+...|++++|...|+++.+. .|+ ...+..++.++.+.|++++|...++++.. +.+...|..++
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 336 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 67788888888888888888753 343 34677788888888888888888887643 33667888888
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHH------------HHhhcC-----ChHHHHHHHHH
Q 012360 394 SACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSN------------FYALEG-----HWTEVAEARRN 445 (465)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~------------~~~~~g-----~~~~a~~~~~~ 445 (465)
.+|...|++++|+..++++++..|+++..+..++. .|...| +.+++.+.+++
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 88888888888988888888888888888888873 344455 45556666665
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-23 Score=197.80 Aligned_cols=377 Identities=10% Similarity=0.008 Sum_probs=225.7
Q ss_pred HHHHHhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHH
Q 012360 36 DARVLFDKMP---FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK 112 (465)
Q Consensus 36 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (465)
.+...|.++. +.+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+.+
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444444 2256678888999999999999999999998763 44677888888899999999999999999988
Q ss_pred hCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCCCc----hhHHHHHHH------------HHhcCChHHHHHHHH
Q 012360 113 VGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRRNI----VSLNILING------------YIDMELVDLAREVFD 175 (465)
Q Consensus 113 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~------------~~~~~~~~~a~~~~~ 175 (465)
.+ +.+..++..+..+|.+.|++++|.+.|+++ ...|+. .++..++.. +...|++++|...|+
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 75 445677888899999999999999999888 445543 445544333 455555555555555
Q ss_pred Hhhc---CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCCh
Q 012360 176 EIVD---KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDA 252 (465)
Q Consensus 176 ~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 252 (465)
++.. .+..++..+...|.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+.
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 245 (450)
T 2y4t_A 168 KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHK 245 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChH
Confidence 5422 244455555555555555555555555555432 2234445555555555555555555555554432 1112
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHH
Q 012360 253 FVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-----EATFVSVLAA 327 (465)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~l~~~ 327 (465)
..+..+... . ....+..+...+...|++++|...|+++.+. .|+ ...+..+..+
T Consensus 246 ~~~~~~~~~-~------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 246 RCFAHYKQV-K------------------KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHC 304 (450)
T ss_dssp HHHHHHHHH-H------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-H------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHH
Confidence 222211000 0 0001112256666777777777777777664 343 2356666677
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHH----------
Q 012360 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSA---------- 395 (465)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~---------- 395 (465)
+.+.|++++|+..++++.+. .+.+...+..+..+|...|++++|...++++.. .| +...+..+..+
T Consensus 305 ~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 382 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKR 382 (450)
T ss_dssp HHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccch
Confidence 77777777777777776642 233566677777777777777777777776533 33 33444444422
Q ss_pred --HHhcC-----ChHHHHHHHHH-HHHhCCCCch----------hHHHHHHHHhhcCChHHH
Q 012360 396 --CITYS-----EFDLGKKVANN-MMKLGNQSHE----------AYVLLSNFYALEGHWTEV 439 (465)
Q Consensus 396 --~~~~~-----~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~a 439 (465)
|...| +.+++.+.|++ +++..|+... .+..+..+|...|+.+.+
T Consensus 383 ~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp CSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred hHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 22333 56777888887 6666665432 455566666666655543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-22 Score=191.74 Aligned_cols=414 Identities=10% Similarity=-0.035 Sum_probs=309.3
Q ss_pred CccchhHHHHHhccCCcchhhhHHHHHHHccCChHHHHHHhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 012360 1 MGKGLHAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP---FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIF 77 (465)
Q Consensus 1 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 77 (465)
+|...++.+++.. +.++..+..+..+|.+.|++++|++.|+.+. +.+..+|..+..++...|++++|+..|+.+ .
T Consensus 43 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~ 120 (537)
T 3fp2_A 43 EAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL-S 120 (537)
T ss_dssp -CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C
T ss_pred HHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH-h
Confidence 3567788888765 5678899999999999999999999999876 446778999999999999999999999743 2
Q ss_pred cCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCC--ccchhhHHHHHHHHHhCCChHHHHHHHHhhC-CCCCch-h
Q 012360 78 EGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGL--EYMLNMENALLLMYAKCKEMDEALRLFDEMG-SRRNIV-S 153 (465)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~ 153 (465)
. .|+.. ...+..+...+....+...++.+..... .+........+..+....+.+.+...+.... ..+... .
T Consensus 121 ~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (537)
T 3fp2_A 121 L--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALL 196 (537)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHH
T ss_pred c--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHH
Confidence 2 33322 2224455556677788888888865421 1111222344556667777777777666652 222222 2
Q ss_pred HHHHHHHHH--------hcCChHHHHHHHHHhhcC--C--------hHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 012360 154 LNILINGYI--------DMELVDLAREVFDEIVDK--D--------IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP 215 (465)
Q Consensus 154 ~~~l~~~~~--------~~~~~~~a~~~~~~~~~~--~--------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 215 (465)
...+...+. ..|++++|..+|+++... + ..++..+...+...|++++|...++++.+. .|
T Consensus 197 ~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~ 274 (537)
T 3fp2_A 197 SDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HP 274 (537)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CC
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CC
Confidence 222222222 225889999999988553 2 235677778889999999999999999985 45
Q ss_pred CHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHH
Q 012360 216 DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEG 292 (465)
Q Consensus 216 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~ 292 (465)
+...+..+...+...|+++.|...++.+.+.. +.+..++..+..++...|++++|...|+++. +.+...+..+...
T Consensus 275 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 353 (537)
T 3fp2_A 275 TPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACL 353 (537)
T ss_dssp CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 67888889999999999999999999998875 4567889999999999999999999998765 3467789999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC----ChhhHHHHHHHHHhc-
Q 012360 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP----TIEHFVCLVDLLSRA- 367 (465)
Q Consensus 293 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~- 367 (465)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.....+ ....+..+...+...
T Consensus 354 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 432 (537)
T 3fp2_A 354 LYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQS 432 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998873 33456888899999999999999999999875311111 122244556777788
Q ss_pred ---------CCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHH
Q 012360 368 ---------GLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424 (465)
Q Consensus 368 ---------g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 424 (465)
|++++|...++++.. +.+...+..++..+...|++++|.+.|+++++..|.++....
T Consensus 433 ~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 433 SQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp TC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred hccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999998754 346778999999999999999999999999999999877443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-20 Score=171.65 Aligned_cols=305 Identities=12% Similarity=0.074 Sum_probs=175.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHhh-CC-CCCchhHHHHHHHHHhcCChHHHHHHHHHhhc--C-ChHHHHHHHHHHHH
Q 012360 120 NMENALLLMYAKCKEMDEALRLFDEM-GS-RRNIVSLNILINGYIDMELVDLAREVFDEIVD--K-DIVLWRSMMHGCVK 194 (465)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~ 194 (465)
..+..+...+...|++++|...|+++ .. +.+..++..+...+...|++++|...|++... | +...+..+...+..
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 33445555566666666666666655 21 22344555566666666666666666665532 2 44566666677777
Q ss_pred cCChhHHHHHHHHHHHcCCCC----CHHHHHHH------------HHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHH
Q 012360 195 AKQPEEALELFKKMIDEGVTP----DEEVMVSV------------LSACSSLSNLQYGRLVHRFILQNNITQDAFVKTAL 258 (465)
Q Consensus 195 ~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 258 (465)
.|++++|...++++.+. .| +...+..+ ...+...|++++|...++.+.+.. +.+..++..+
T Consensus 84 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 160 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELR 160 (359)
T ss_dssp HTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 77777777777776653 33 22222222 344556666666666666665543 3345556666
Q ss_pred HHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHH------------
Q 012360 259 IDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFV------------ 322 (465)
Q Consensus 259 ~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~------------ 322 (465)
..++...|++++|...++++. +.+...+..+...+...|++++|...+++..+. .|+ ...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHH
Confidence 666666666666666665543 234556666666666666666666666666654 232 22221
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-h----hhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHH
Q 012360 323 SVLAACRHSGLITEGCQLFRRMGGVYRVQPT-I----EHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSA 395 (465)
Q Consensus 323 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~ 395 (465)
.+...+...|++++|...++++.+. .|+ . ..+..+..++...|++++|.+.+++... .| +..++..++..
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 2244566667777777777666642 222 2 2233455666666666666666665533 22 45566666666
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhh
Q 012360 396 CITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL 432 (465)
Q Consensus 396 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 432 (465)
+...|++++|...++++++..|+++..+..+..+...
T Consensus 316 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 6666677777777777666666666666555555443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-20 Score=168.76 Aligned_cols=297 Identities=12% Similarity=0.026 Sum_probs=248.0
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012360 150 NIVSLNILINGYIDMELVDLAREVFDEIVD---KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226 (465)
Q Consensus 150 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 226 (465)
++..+..+...+...|++++|...|+++.. .+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 345677888999999999999999999844 367889999999999999999999999999863 3356788888999
Q ss_pred hccchhhHhHHHHHHHHHHcCCC--CChhHHHHH------------HHHHHhcCCHHHHHHHHhcCC---CCChhhHHHH
Q 012360 227 CSSLSNLQYGRLVHRFILQNNIT--QDAFVKTAL------------IDMYSKCGSLEEALVTFYKTD---CKDVVTWTTM 289 (465)
Q Consensus 227 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l 289 (465)
+...|++++|...++.+.+.... .+...+..+ ...+...|++++|...++++. +.+...+..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 99999999999999999886420 244444444 588899999999999998865 3467789999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHH-----------
Q 012360 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----------- 358 (465)
Q Consensus 290 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------- 358 (465)
...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+. .+.+...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHH
Confidence 999999999999999999998873 346788999999999999999999999999853 223333332
Q ss_pred -HHHHHHHhcCCHHHHHHHHHhCCC-CCc-c----chHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 012360 359 -CLVDLLSRAGLLYQAEEFIKIMPA-EDK-F----ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431 (465)
Q Consensus 359 -~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 431 (465)
.+...+.+.|++++|...++++.. .|+ . ..+..+...+...|++++|+..++++++..|+++.++..++.++.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 336779999999999999998654 333 2 235567889999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHhc
Q 012360 432 LEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 432 ~~g~~~~a~~~~~~~~~~~ 450 (465)
..|++++|...++++.+..
T Consensus 318 ~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHHHHhcC
Confidence 9999999999999887653
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.5e-19 Score=167.81 Aligned_cols=376 Identities=10% Similarity=0.030 Sum_probs=305.4
Q ss_pred HHHhccCC-CCCcccHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcc----hhhhhhhhHHHH
Q 012360 38 RVLFDKMP-FRDVGSWNTLMSIYND----FSDSGEVLILFKQLIFEGIVADKITLVILFSACAR----LEKLHYGKTVHC 108 (465)
Q Consensus 38 ~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 108 (465)
...++... ..+..++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|.+.++
T Consensus 27 ~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 34444332 4577788888888888 899999999999998864 45667777777777 889999999999
Q ss_pred HHHHhCCccchhhHHHHHHHHHh----CCChHHHHHHHHhhCCCCCchhHHHHHHHHHh----cCChHHHHHHHHHhhc-
Q 012360 109 YATKVGLEYMLNMENALLLMYAK----CKEMDEALRLFDEMGSRRNIVSLNILINGYID----MELVDLAREVFDEIVD- 179 (465)
Q Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~- 179 (465)
...+.| +...+..|...|.. .+++++|...|++.-...+..++..+...|.. .++.++|.+.|++..+
T Consensus 104 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 104 KAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 998876 45556678888887 78999999999998334467778888888887 7899999999998855
Q ss_pred CChHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc----chhhHhHHHHHHHHHHcCCCCC
Q 012360 180 KDIVLWRSMMHGCVK----AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS----LSNLQYGRLVHRFILQNNITQD 251 (465)
Q Consensus 180 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 251 (465)
.+...+..+...|.. .++.++|...|++..+.| +...+..+...+.. .+++++|...++...+.+ +
T Consensus 181 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 254 (490)
T 2xm6_A 181 GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---N 254 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---C
T ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 477888888888888 899999999999998865 45566666666654 789999999999998865 4
Q ss_pred hhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHH
Q 012360 252 AFVKTALIDMYSK----CGSLEEALVTFYKTDC-KDVVTWTTMIEGLANY-----GLGNEALRVFYQMERKGIKPNEATF 321 (465)
Q Consensus 252 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~ 321 (465)
...+..+...|.. .+++++|...|++..+ .++..+..+...|... +++++|..+|++..+.| +...+
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 331 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ 331 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence 5667778888887 8999999999988664 4667888888888887 89999999999998875 45667
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhCCCCCccchHHHHHH
Q 012360 322 VSVLAACRHSG---LITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR----AGLLYQAEEFIKIMPAEDKFISYKALLS 394 (465)
Q Consensus 322 ~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 394 (465)
..+...|...| ++++|+++|++..+. .+...+..|...|.. .+++++|.+.|++.....++..+..+..
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~ 407 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 77777777756 889999999999864 457788889999998 8999999999999876777888999999
Q ss_pred HHHh----cCChHHHHHHHHHHHHhCCC---CchhHHHHHHHHhh
Q 012360 395 ACIT----YSEFDLGKKVANNMMKLGNQ---SHEAYVLLSNFYAL 432 (465)
Q Consensus 395 ~~~~----~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 432 (465)
.|.. .+++++|...|+++.+.+|+ ++.....++..+..
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9988 89999999999999999954 66666666665554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.9e-20 Score=163.46 Aligned_cols=285 Identities=11% Similarity=0.019 Sum_probs=179.4
Q ss_pred ccchhhHHHHHHHHHhCCChHHHHHHHHhh--CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhc---CChHHHHHHHH
Q 012360 116 EYMLNMENALLLMYAKCKEMDEALRLFDEM--GSRRNIVSLNILINGYIDMELVDLAREVFDEIVD---KDIVLWRSMMH 190 (465)
Q Consensus 116 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~ 190 (465)
+.+...+..+...+...|++++|.++|+++ ..+.+..++..++..+...|++++|...++++.. .+...+..+..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 344555556666666666666666666665 2122333444455555555555555555555422 13444555555
Q ss_pred HHHHcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 012360 191 GCVKAK-QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269 (465)
Q Consensus 191 ~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (465)
.+...| ++++|...|++..+. . +.+...+..+..++...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~-----------------------------------~-~~~~~~~~~l~~~~~~~~~~~ 142 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTL-----------------------------------E-KTYGPAWIAYGHSFAVESEHD 142 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTT-----------------------------------C-TTCTHHHHHHHHHHHHHTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHh-----------------------------------C-CccHHHHHHHHHHHHHccCHH
Confidence 555555 555555555555443 2 222334444555555555555
Q ss_pred HHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 012360 270 EALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346 (465)
Q Consensus 270 ~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 346 (465)
+|...|+++. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+
T Consensus 143 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 143 QAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 5555554433 1234455556667777777777777777777652 23456777777888888888888888877764
Q ss_pred CC-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 012360 347 VY-------RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417 (465)
Q Consensus 347 ~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 417 (465)
.. ..+....++..+..++...|++++|...+++... +.+...+..+...+...|++++|.+.++++++..|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 21 0133456788888888888999999888887643 34677888889999999999999999999999999
Q ss_pred CCchhHHHHHHHH-hhcCChH
Q 012360 418 QSHEAYVLLSNFY-ALEGHWT 437 (465)
Q Consensus 418 ~~~~~~~~l~~~~-~~~g~~~ 437 (465)
+++..+..++.++ ...|+.+
T Consensus 302 ~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 302 DDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CCHHHHHHHHHHHHTTTTC--
T ss_pred CchHHHHHHHHHHHHHhCchh
Confidence 9998889998888 4556544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-18 Score=161.24 Aligned_cols=363 Identities=14% Similarity=0.027 Sum_probs=301.0
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHhcc----hhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHh----CCChHHHH
Q 012360 68 VLILFKQLIFEGIVADKITLVILFSACAR----LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAK----CKEMDEAL 139 (465)
Q Consensus 68 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 139 (465)
++..++...+.| +...+..+...+.. .++++.|...++...+.| +...+..|...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 455566555543 55666667666666 789999999999998875 45567778888888 89999999
Q ss_pred HHHHhhCCCCCchhHHHHHHHHHh----cCChHHHHHHHHHhhcC-ChHHHHHHHHHHHH----cCChhHHHHHHHHHHH
Q 012360 140 RLFDEMGSRRNIVSLNILINGYID----MELVDLAREVFDEIVDK-DIVLWRSMMHGCVK----AKQPEEALELFKKMID 210 (465)
Q Consensus 140 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 210 (465)
+.|++.-...+..++..+...|.. .+++++|.+.|++.... +...+..+...|.. .++.++|++.|++..+
T Consensus 100 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 100 IWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 999998334567788888888888 88999999999998654 67788888888887 7899999999999988
Q ss_pred cCCCCCHHHHHHHHHHhcc----chhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-C
Q 012360 211 EGVTPDEEVMVSVLSACSS----LSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK----CGSLEEALVTFYKTDC-K 281 (465)
Q Consensus 211 ~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~ 281 (465)
.| +...+..+...|.. .++.++|...|+...+.+ +...+..+...|.. .+++++|..+|++..+ .
T Consensus 180 ~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 253 (490)
T 2xm6_A 180 QG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG 253 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred CC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 65 56677777777766 899999999999998875 46677788888886 7899999999988654 4
Q ss_pred ChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHhhcCCCCCC
Q 012360 282 DVVTWTTMIEGLAN----YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS-----GLITEGCQLFRRMGGVYRVQP 352 (465)
Q Consensus 282 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~ 352 (465)
+...+..+...|.. .+++++|..+|++..+.| +...+..+...|... +++++|+.+|++..+. .
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~ 326 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----G 326 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----T
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----C
Confidence 66778888888888 899999999999998764 456777788888777 8999999999999864 3
Q ss_pred ChhhHHHHHHHHHhcC---CHHHHHHHHHhCCCCCccchHHHHHHHHHh----cCChHHHHHHHHHHHHhCCCCchhHHH
Q 012360 353 TIEHFVCLVDLLSRAG---LLYQAEEFIKIMPAEDKFISYKALLSACIT----YSEFDLGKKVANNMMKLGNQSHEAYVL 425 (465)
Q Consensus 353 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~ 425 (465)
+...+..+...|...| ++++|.++|++....+++..+..+...|.. .+++++|++.|+++.+.+ ++..+..
T Consensus 327 ~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~ 404 (490)
T 2xm6_A 327 DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQ 404 (490)
T ss_dssp CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHH
Confidence 4567778888888866 789999999988777788899999999988 899999999999999875 4677999
Q ss_pred HHHHHhh----cCChHHHHHHHHHHHHhcC
Q 012360 426 LSNFYAL----EGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 426 l~~~~~~----~g~~~~a~~~~~~~~~~~~ 451 (465)
|+.+|.. .+++++|...+++..+.+.
T Consensus 405 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 405 LGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999998 8999999999999988764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-19 Score=161.90 Aligned_cols=264 Identities=9% Similarity=0.022 Sum_probs=221.6
Q ss_pred ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHH
Q 012360 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALID 260 (465)
Q Consensus 181 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 260 (465)
+...+..++..+...|++++|.++++++.+.. +.+...+..+...+...|++++|..+++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 55566677777888888888888888887753 2344556666777788888899998888888764 446778888999
Q ss_pred HHHhcC-CHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 012360 261 MYSKCG-SLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336 (465)
Q Consensus 261 ~~~~~~-~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~ 336 (465)
.+...| ++++|...|++.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 999999 9999999998755 3456789999999999999999999999998873 2235667778999999999999
Q ss_pred HHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-----------CCccchHHHHHHHHHhcCChHHH
Q 012360 337 GCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-----------EDKFISYKALLSACITYSEFDLG 405 (465)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a 405 (465)
|...++++.+. .+.+...+..+...+...|++++|...++++.. .....++..++..+...|++++|
T Consensus 178 A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 178 AERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999963 345678899999999999999999999987643 22456899999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 406 KKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 406 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
+..++++++..|.++..+..++.++...|++++|...+++..+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999977543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=8e-18 Score=160.91 Aligned_cols=417 Identities=11% Similarity=0.060 Sum_probs=287.0
Q ss_pred hHHHHHhccCCcchhhhHHHHHHHccCChHHHHHHhccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 012360 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPF---RDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVA 82 (465)
Q Consensus 6 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 82 (465)
++..++.. +-+...|..++. +.+.|++++|+.+|+.+.. .+...|..++..+.+.|++++|..+|+++... .|
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VL 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CC
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC
Confidence 44555443 457778888888 4778999999999998763 35667889999999999999999999999875 46
Q ss_pred chhhHHHHHHHh-cchhhhhhhhH----HHHHHHHh-CCcc-chhhHHHHHHHHHh---------CCChHHHHHHHHhhC
Q 012360 83 DKITLVILFSAC-ARLEKLHYGKT----VHCYATKV-GLEY-MLNMENALLLMYAK---------CKEMDEALRLFDEMG 146 (465)
Q Consensus 83 ~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~ 146 (465)
+...|...+... ...|+.+.|.+ +|+..... |..| +..+|...+....+ .|+++.|..+|++.-
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 766776666433 34567776665 66666553 4433 45667777766554 578888888888873
Q ss_pred CCCCc---hhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHH------HcC---CC
Q 012360 147 SRRNI---VSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI------DEG---VT 214 (465)
Q Consensus 147 ~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~~---~~ 214 (465)
..|.. ..|..........|. ..+..+ +. .+.+++..|..++.... +.. ++
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~---------------l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~ 219 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINI-HLAKKM---------------IE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVP 219 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCH-HHHHHH---------------HH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred hchhhhHHHHHHHHHHHHHhhch-hHHHHH---------------HH--HhhHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 24432 122222211101110 011111 10 12344555665555422 211 23
Q ss_pred CCH--------HHHHHHHHHhcc----chhh----HhHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------cCCHH--
Q 012360 215 PDE--------EVMVSVLSACSS----LSNL----QYGRLVHRFILQNNITQDAFVKTALIDMYSK-------CGSLE-- 269 (465)
Q Consensus 215 ~~~--------~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-- 269 (465)
|+. ..|...+..... .++. ..+..+|++.+... +.+...|..++..+.+ .|+++
T Consensus 220 p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a 298 (530)
T 2ooe_A 220 PQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNA 298 (530)
T ss_dssp CC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhh
Confidence 331 233333322111 1222 36777888888763 5567888888888875 68887
Q ss_pred -----HHHHHHhcCCC---C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCCHHHHH
Q 012360 270 -----EALVTFYKTDC---K-DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-E-ATFVSVLAACRHSGLITEGC 338 (465)
Q Consensus 270 -----~a~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~-~~~~~l~~~~~~~~~~~~a~ 338 (465)
+|..+|++... | +...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.
T Consensus 299 ~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~ 376 (530)
T 2ooe_A 299 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGR 376 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHH
Confidence 89999987653 3 5678999999999999999999999999986 564 3 47888888888999999999
Q ss_pred HHHHHhhcCCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 012360 339 QLFRRMGGVYRVQPTIEHFVCLVDL-LSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKL 415 (465)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 415 (465)
.+|+++.+. .+.+...+...+.. +...|+.++|..+|+.... .| ++..|..++..+.+.|+.++|..+|+++++.
T Consensus 377 ~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 377 MIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 999999864 12233333332222 3468999999999997654 33 6788999999999999999999999999998
Q ss_pred CCCCch----hHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 416 GNQSHE----AYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 416 ~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
.|.++. +|...+......|+.+.+..+.+++.+.
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 876655 7888888888999999999999888654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.6e-20 Score=166.66 Aligned_cols=299 Identities=11% Similarity=0.005 Sum_probs=213.6
Q ss_pred HHHhCCChHHHHH-HHHhh-CCCC-----CchhHHHHHHHHHhcCChHHHHHHHHHhhc---CChHHHHHHHHHHHHcCC
Q 012360 128 MYAKCKEMDEALR-LFDEM-GSRR-----NIVSLNILINGYIDMELVDLAREVFDEIVD---KDIVLWRSMMHGCVKAKQ 197 (465)
Q Consensus 128 ~~~~~g~~~~A~~-~~~~~-~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~ 197 (465)
++...|++++|.. .+++. ...| +...+..+...+...|++++|...|+++.. .+..++..+...+...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 4455688888888 87765 2222 345677888888888888888888888744 256778888888888888
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhc
Q 012360 198 PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK 277 (465)
Q Consensus 198 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 277 (465)
+++|...|+++.+.. +.+..++..+...+...|++++|...++.+.+.... +...+..+... ..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------- 177 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------- 177 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------
Confidence 888888888887764 335667777777788888888888888887775421 12111111000 00
Q ss_pred CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhh
Q 012360 278 TDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356 (465)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 356 (465)
...+ ...+..+...+ ..|++++|...++++.+..... +..++..+...+...|++++|+..++++... .+.+...
T Consensus 178 ~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~ 253 (368)
T 1fch_A 178 GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLL 253 (368)
T ss_dssp ---------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHH
Confidence 0000 01111222333 7889999999999998863211 4778889999999999999999999999853 3446788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC-----------chhH
Q 012360 357 FVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS-----------HEAY 423 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~ 423 (465)
+..+...+...|++++|...++++.. +.+..++..++..+...|++++|...++++++..|++ ..+|
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 333 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW 333 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHH
Confidence 99999999999999999999998754 3467789999999999999999999999999998877 7889
Q ss_pred HHHHHHHhhcCChHHHHHHHHHH
Q 012360 424 VLLSNFYALEGHWTEVAEARRNM 446 (465)
Q Consensus 424 ~~l~~~~~~~g~~~~a~~~~~~~ 446 (465)
..++.+|...|++++|..++++.
T Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 334 STLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHhCChHhHHHhHHHH
Confidence 99999999999999999988743
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-19 Score=159.68 Aligned_cols=359 Identities=12% Similarity=0.063 Sum_probs=169.8
Q ss_pred CcchhhhHHHHHHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhc
Q 012360 16 SDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACA 95 (465)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 95 (465)
+++.+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++..++. .+++.+.+.++.+|.
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~ 105 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHH
Confidence 44468889999999999999999988653 56678888888888899999999977766653 455777888888999
Q ss_pred chhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 012360 96 RLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175 (465)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 175 (465)
+.|++.++.++++ .|+..+|+.+...|...|.+++|...|..+ ..|..++.++.+.|++++|.+.++
T Consensus 106 Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------~n~~~LA~~L~~Lg~yq~AVea~~ 172 (449)
T 1b89_A 106 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVHLGEYQAAVDGAR 172 (449)
T ss_dssp ---CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------TCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------hhHHHHHHHHHHhccHHHHHHHHH
Confidence 9999888887774 366678888999999999999999999887 478889999999999999999998
Q ss_pred HhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHH
Q 012360 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVK 255 (465)
Q Consensus 176 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 255 (465)
+. .++.+|..++.+|...|+++.|......+ ...+.-...++..|.+.|++++|..+++...... +.....|
T Consensus 173 KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~f 244 (449)
T 1b89_A 173 KA--NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMF 244 (449)
T ss_dssp HH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHH
T ss_pred Hc--CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHH
Confidence 88 37888999999999999999985544432 2233335567788889999999999998887665 5567777
Q ss_pred HHHHHHHHhc--CCHHHHHHHHhcCCC--------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012360 256 TALIDMYSKC--GSLEEALVTFYKTDC--------KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVL 325 (465)
Q Consensus 256 ~~l~~~~~~~--~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 325 (465)
+.+..+|++- +++.+.++.|..-.. .+...|..+...|...++++.|... |.+. +|+...-..+.
T Consensus 245 tel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~ 319 (449)
T 1b89_A 245 TELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFK 319 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHH
Confidence 7777777763 466667777754332 2567899999999999999988764 4444 33322222333
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHH-------------HHHHHhcCCHHHHHHHHHhCCCCCccchHHHH
Q 012360 326 AACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL-------------VDLLSRAGLLYQAEEFIKIMPAEDKFISYKAL 392 (465)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 392 (465)
....+..+.+--.+...-.... .|. ..+.| +..+.+.|+..-+...+..++...+..+-.++
T Consensus 320 ~~~~kv~n~elyYkai~fyl~~---~p~--~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n~~~vneal 394 (449)
T 1b89_A 320 DIITKVANVELYYRAIQFYLEF---KPL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESL 394 (449)
T ss_dssp HHHHHCSSTHHHHHHHHHHHHH---CGG--GHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhchhHHHHHHHHHHHHHhc---CHH--HHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHHHHH
Confidence 3333444433322222222211 122 23333 34444445444444444444433344444555
Q ss_pred HHHHHhcCChHHHHHHH
Q 012360 393 LSACITYSEFDLGKKVA 409 (465)
Q Consensus 393 ~~~~~~~~~~~~a~~~~ 409 (465)
-..|....|++.-....
T Consensus 395 n~l~ieeed~~~lr~si 411 (449)
T 1b89_A 395 NNLFITEEDYQALRTSI 411 (449)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHH
Confidence 56666777765544433
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-18 Score=150.10 Aligned_cols=269 Identities=8% Similarity=0.011 Sum_probs=209.1
Q ss_pred HHHHhcCChHHHHHHHHHhhcCC----hHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhH
Q 012360 159 NGYIDMELVDLAREVFDEIVDKD----IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQ 234 (465)
Q Consensus 159 ~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 234 (465)
+-....|++..|+..++.....+ ......+.++|...|+++.|+..++.. -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 44456677777777777654432 234455678889999999888766542 3556777888888888899999
Q ss_pred hHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012360 235 YGRLVHRFILQNNI-TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKG 313 (465)
Q Consensus 235 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 313 (465)
+|.+.++++...+. +.+...+..+..++...|++++|++.+++ ..+...+..++..+.+.|++++|...++++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 99999999887764 34566777788999999999999999998 567788999999999999999999999999987
Q ss_pred CCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccch
Q 012360 314 IKPNEATF---VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFIS 388 (465)
Q Consensus 314 ~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~ 388 (465)
.|+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...++++.. .| ++.+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4653211 12334444568999999999999963 456888999999999999999999999998654 34 7778
Q ss_pred HHHHHHHHHhcCChHH-HHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHH
Q 012360 389 YKALLSACITYSEFDL-GKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAE 441 (465)
Q Consensus 389 ~~~l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 441 (465)
+..++..+...|+.++ +.++++++++.+|+++.+. +...+.+.++++..
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 9999999999999876 6789999999999998733 34445555555443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-19 Score=159.19 Aligned_cols=373 Identities=12% Similarity=0.093 Sum_probs=163.7
Q ss_pred HccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHH
Q 012360 29 GRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHC 108 (465)
Q Consensus 29 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 108 (465)
-+.|++++|.++++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3668899999999999665 49999999999999999999999753 577799999999999999999999888
Q ss_pred HHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHH
Q 012360 109 YATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSM 188 (465)
Q Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 188 (465)
...+. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...|..+ ..|..+
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp -------------------------CHHHHTTTTT----CC----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 77764 4557788899999999999999988875 477789999999999999999999999988 378999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 012360 189 MHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL 268 (465)
Q Consensus 189 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 268 (465)
+.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|...... +...+.-...++..|.+.|.+
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCH
Confidence 99999999999999999988 2678999999999999999999654443 223334455688888999999
Q ss_pred HHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCC------CHHHHHHHHHHHHhcCCHHHHH
Q 012360 269 EEALVTFYKTDC---KDVVTWTTMIEGLANYGLGNEALRVFYQMER-KGIKP------NEATFVSVLAACRHSGLITEGC 338 (465)
Q Consensus 269 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~g~~p------~~~~~~~l~~~~~~~~~~~~a~ 338 (465)
++|..+++.... .....|+-+.-+|++- ++++..+.++.-.. -+++| +...|.-+.-.|.+.++++.|.
T Consensus 224 eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 224 EELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 999888887553 2455677777777664 33443333332221 22233 2345677777777778888776
Q ss_pred HHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHH---HHHHHHHhCCCCCccchHHHHH-------------HHHHhcCCh
Q 012360 339 QLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLY---QAEEFIKIMPAEDKFISYKALL-------------SACITYSEF 402 (465)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~l~-------------~~~~~~~~~ 402 (465)
...-+-. |+..-...+.+...+..+.+ +|..++- ...+..++.|+ ..+.+.|+.
T Consensus 303 ~tm~~h~------~~a~~~~~f~~~~~kv~n~elyYkai~fyl----~~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l 372 (449)
T 1b89_A 303 ITMMNHP------TDAWKEGQFKDIITKVANVELYYRAIQFYL----EFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQL 372 (449)
T ss_dssp HHHHHST------TTTCCHHHHHHHHHHCSSTHHHHHHHHHHH----HHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCT
T ss_pred HHHHhCC------hhhhhhHHHHHHHhchhHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhccCcHHHHHHHHHcCCc
Confidence 6443332 22111122222222222222 2222221 01122233333 444455555
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHH
Q 012360 403 DLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARR 444 (465)
Q Consensus 403 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 444 (465)
.-+...+..+.. -++..+-..+-..|...++++.-+.-.+
T Consensus 373 ~l~~~yl~~v~~--~n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 373 PLVKPYLRSVQN--HNNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp TTTHHHHHHHHT--TCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 555555544332 3455566778888888888887666554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.1e-17 Score=155.34 Aligned_cols=373 Identities=9% Similarity=0.038 Sum_probs=244.2
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHH
Q 012360 48 DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLL 127 (465)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 127 (465)
+..+|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+++.|..+|+++++.. |+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 5667777777 466788888888888887642 3344567777777777788888888888877653 45556665554
Q ss_pred HH-HhCCChHHHHH----HHHhh----CCCC-CchhHHHHHHHHHh---------cCChHHHHHHHHHhhc-CCh---HH
Q 012360 128 MY-AKCKEMDEALR----LFDEM----GSRR-NIVSLNILINGYID---------MELVDLAREVFDEIVD-KDI---VL 184 (465)
Q Consensus 128 ~~-~~~g~~~~A~~----~~~~~----~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~-~~~---~~ 184 (465)
.. ...|+.+.|.+ +|+.. |..| +...|...+..... .|+++.|..+|++... |.. ..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 22 34566666554 44443 3333 33455555554443 4566666666666543 111 11
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHH------HcC---CCCC----
Q 012360 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFIL------QNN---ITQD---- 251 (465)
Q Consensus 185 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~------~~~---~~~~---- 251 (465)
|..........| ..+...++. ...+++..|..+++... +.. ++|+
T Consensus 168 ~~~~~~~e~~~~--------------------~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 225 (530)
T 2ooe_A 168 WRDYNKYEEGIN--------------------IHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ 225 (530)
T ss_dssp HHHHHHHHHHHC--------------------HHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CC
T ss_pred HHHHHHHHHhhc--------------------hhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChh
Confidence 111111000000 001111111 23466777777766532 111 2333
Q ss_pred ----hhHHHHHHHHHHhc----CCH----HHHHHHHhcCC---CCChhhHHHHHHHHHH-------cCChH-------HH
Q 012360 252 ----AFVKTALIDMYSKC----GSL----EEALVTFYKTD---CKDVVTWTTMIEGLAN-------YGLGN-------EA 302 (465)
Q Consensus 252 ----~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~---~~~~~~~~~l~~~~~~-------~~~~~-------~a 302 (465)
...|...+...... ++. ..+..+|++.. +.++..|..++..+.+ .|+++ +|
T Consensus 226 ~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 23444444333221 222 36667777655 3467788888888776 68887 89
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-h-hhHHHHHHHHHhcCCHHHHHHHHHh
Q 012360 303 LRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT-I-EHFVCLVDLLSRAGLLYQAEEFIKI 379 (465)
Q Consensus 303 ~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~ 379 (465)
..++++..+. +.| +...+..++..+.+.|++++|..+|+++.+. +|+ . ..|..++..+.+.|++++|.++|++
T Consensus 306 ~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 306 ANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999998862 245 4678888999999999999999999999953 454 2 5788899999999999999999998
Q ss_pred CCCCC--ccchHHHHHHH-HHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 380 MPAED--KFISYKALLSA-CITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 380 ~~~~~--~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
....+ +...|...+.. +...|++++|..+|+++++..|+++.+|..++..+.+.|+.++|+.++++....+
T Consensus 382 Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 382 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 76533 22333332222 3368999999999999999999999999999999999999999999999987753
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=8.2e-17 Score=160.13 Aligned_cols=377 Identities=10% Similarity=0.032 Sum_probs=263.4
Q ss_pred cchhhhHHHHHHHccCChHHHHHHhccCC-CC-----CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHH
Q 012360 17 DIYVGNSLIHFYGRMALFTDARVLFDKMP-FR-----DVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVIL 90 (465)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 90 (465)
++.--...+.+|...|.+.+|+++++++. .+ +....+.++.+..+. +..+..+..++.... + ...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHH
Confidence 44555666777778888888888888766 22 224455566666665 556666666555421 1 2335
Q ss_pred HHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHH-hCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHH
Q 012360 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA-KCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDL 169 (465)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 169 (465)
...+...|.+++|..+|++... +...+..+. ..|++++|.++.++. -+..+|..+..++...|++++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~---------~~~A~~VLie~i~nldrAiE~Aerv---n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV---------NTSAVQVLIEHIGNLDRAYEFAERC---NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC---------HHHHHHHHHHHHhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCHHH
Confidence 6667778888888888877521 111122222 667888888888775 346678888888888888888
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCC
Q 012360 170 AREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT 249 (465)
Q Consensus 170 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 249 (465)
|.+.|.+. .|...|..++.++.+.|++++|.+.|....+.. ++....+.+..+|++.++++....+. + .
T Consensus 1124 AIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~ 1192 (1630)
T 1xi4_A 1124 AIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---G 1192 (1630)
T ss_pred HHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---C
Confidence 88888664 567777888888888888888888888776643 33333334777788887777533332 2 3
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 012360 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACR 329 (465)
Q Consensus 250 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 329 (465)
++...+..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+|..+-.+|.
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 1261 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHh
Confidence 45556667888888888888888888774 47888888888888888888888765 35678888888888
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHh--cCChHHH
Q 012360 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACIT--YSEFDLG 405 (465)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~--~~~~~~a 405 (465)
..|++..|......+. .++..+..++..|.+.|.+++|+.+++.... ++ ....|..+...+++ -++..++
T Consensus 1262 e~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred hhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHH
Confidence 8888888877665432 3455677888889999999999999987644 22 45567666666665 3455666
Q ss_pred HHHHHHHHHhCC-----CCchhHHHHHHHHhhcCChHHHHH
Q 012360 406 KKVANNMMKLGN-----QSHEAYVLLSNFYALEGHWTEVAE 441 (465)
Q Consensus 406 ~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 441 (465)
.+.|..-....| .+...|..+...|.+.|+++.|..
T Consensus 1336 lk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1336 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 666665555444 566778899999999999998873
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.6e-19 Score=161.30 Aligned_cols=271 Identities=9% Similarity=-0.005 Sum_probs=196.7
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012360 150 NIVSLNILINGYIDMELVDLAREVFDEIVD---KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSA 226 (465)
Q Consensus 150 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 226 (465)
+...+..+...+.+.|++++|.+.|+++.. .+..++..+...+...|++++|...|+++.+.. +.+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 445577777778888888888888877743 356677777777888888888888887777653 2345666677777
Q ss_pred hccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHH
Q 012360 227 CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVF 306 (465)
Q Consensus 227 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 306 (465)
+...|++++|...++++.+.... +...+..+. .....+..+...+...|++++|...+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPK-YKYLVKNKK---------------------GSPGLTRRMSKSPVDSSVLEGVKELY 200 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHH-HHCC----------------------------------------CCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCcc-chHHHhhhc---------------------cchHHHHHHHHHHhhhhhHHHHHHHH
Confidence 77777777777777777664310 011111000 11223445677788889999999999
Q ss_pred HHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC
Q 012360 307 YQMERKGIK-PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED 384 (465)
Q Consensus 307 ~~m~~~g~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 384 (465)
+++.+.... ++..++..+...+...|++++|+..++++.+. .+.+..++..+..+|...|++++|...|+++.. .|
T Consensus 201 ~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 278 (365)
T 4eqf_A 201 LEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278 (365)
T ss_dssp HHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 998886321 15778889999999999999999999999853 345688899999999999999999999988754 33
Q ss_pred -ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC------------CchhHHHHHHHHhhcCChHHHHHHHHH
Q 012360 385 -KFISYKALLSACITYSEFDLGKKVANNMMKLGNQ------------SHEAYVLLSNFYALEGHWTEVAEARRN 445 (465)
Q Consensus 385 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 445 (465)
+..++..++.+|...|++++|+..++++++..|. +..+|..++.++...|+.+.+..+.++
T Consensus 279 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 279 GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 5778999999999999999999999999998876 366799999999999999999888764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-18 Score=155.93 Aligned_cols=247 Identities=13% Similarity=0.074 Sum_probs=144.7
Q ss_pred hhhhhhhhH-HHHHHHHhCCc---cchhhHHHHHHHHHhCCChHHHHHHHHhh-CC-CCCchhHHHHHHHHHhcCChHHH
Q 012360 97 LEKLHYGKT-VHCYATKVGLE---YMLNMENALLLMYAKCKEMDEALRLFDEM-GS-RRNIVSLNILINGYIDMELVDLA 170 (465)
Q Consensus 97 ~~~~~~a~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a 170 (465)
.|+++.|.. .++...+.... .+...+..+...+.+.|++++|...|+++ .. +.+..++..+...+...|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 466677766 66554433211 13456777888888888888888888887 32 34566788888888888888888
Q ss_pred HHHHHHhhc---CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHhccchh
Q 012360 171 REVFDEIVD---KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVS---------------VLSACSSLSN 232 (465)
Q Consensus 171 ~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---------------ll~~~~~~~~ 232 (465)
.+.|++... .+..++..+...+...|++++|...++++.+.... +...+.. .+..+...|+
T Consensus 118 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (368)
T 1fch_A 118 ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL 196 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhccc
Confidence 888887743 36778888999999999999999999998875422 1112111 1222336667
Q ss_pred hHhHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 012360 233 LQYGRLVHRFILQNNITQ-DAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQ 308 (465)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 308 (465)
+++|...++.+.+..... +..++..+..++...|++++|...|+++. +.+...+..+...+...|++++|...+++
T Consensus 197 ~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 276 (368)
T 1fch_A 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 276 (368)
T ss_dssp HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777666643211 34555555555555555555555555432 22344455555555555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 309 MERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 309 m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
+.+.. +.+...+..+..++.+.|++++|...|+++.
T Consensus 277 al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 277 ALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 54431 1223444555555555555555555555544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-17 Score=154.69 Aligned_cols=388 Identities=10% Similarity=-0.047 Sum_probs=197.4
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHc-----C--CCC-chhhHHHHHHHhcchhhhhhhhHHHHHHHHhCC----
Q 012360 48 DVGSWNTLMSIYNDFSDSGEVLILFKQLIFE-----G--IVA-DKITLVILFSACARLEKLHYGKTVHCYATKVGL---- 115 (465)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---- 115 (465)
....||.|..++...|++++|++.|++..+. + ..| ...+|..+...|...|++++|...+++..+...
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456777878888888888888888776431 1 112 234566666667777777777777666654310
Q ss_pred --cc-chhhHHHHHHHHHh--CCChHHHHHHHHhh-CCCCCc-hhHHHHHHH---HHhcCChHHHHHHHHHhhc--C-Ch
Q 012360 116 --EY-MLNMENALLLMYAK--CKEMDEALRLFDEM-GSRRNI-VSLNILING---YIDMELVDLAREVFDEIVD--K-DI 182 (465)
Q Consensus 116 --~~-~~~~~~~l~~~~~~--~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~---~~~~~~~~~a~~~~~~~~~--~-~~ 182 (465)
.+ ...++.....++.. .+++++|+..|++. ...|+. ..+..+... +...++.++|++.+++..+ | +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 01 12233333333332 33566666666665 333332 223333222 2233444555555554422 2 33
Q ss_pred HHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHH
Q 012360 183 VLWRSMMHGCVK----AKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTAL 258 (465)
Q Consensus 183 ~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 258 (465)
..+..+...+.. .|++++|.+.+++..... +.+..++..+...+...|++++|...+++..+.. +.+..++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 344433333332 234555555555555432 2234445555555555666666666665555543 2233444444
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 012360 259 IDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGC 338 (465)
Q Consensus 259 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 338 (465)
..+|...+....+.. .. .........+..+.|...+++..+.. +.+..++..+...+...|++++|+
T Consensus 288 g~~y~~~~~~~~~~~------~~------~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~ 354 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLR------EN------GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAE 354 (472)
T ss_dssp HHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhHH------HH------HHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHH
Confidence 444332111100000 00 00000111234577888888877652 224467788889999999999999
Q ss_pred HHHHHhhcCCCCCCCh--hhHHHHHH-HHHhcCCHHHHHHHHHhCCC-CCccchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012360 339 QLFRRMGGVYRVQPTI--EHFVCLVD-LLSRAGLLYQAEEFIKIMPA-EDKFISYKALLSACITYSEFDLGKKVANNMMK 414 (465)
Q Consensus 339 ~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (465)
..|+++.+. ...+.. ..+..+.. .+...|++++|+..|++... .|+.... .+....+.+++++.++
T Consensus 355 ~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~---------~~~~~~l~~~~~~~l~ 424 (472)
T 4g1t_A 355 YYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK---------EKMKDKLQKIAKMRLS 424 (472)
T ss_dssp HHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH---------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH---------HHHHHHHHHHHHHHHH
Confidence 999998753 222211 12233332 24577899999998887543 3433222 1223456677888889
Q ss_pred hCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCCCeee
Q 012360 415 LGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPGNSII 460 (465)
Q Consensus 415 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 460 (465)
.+|+++.+|..++.+|...|++++|.+.+++..+.+.......+|+
T Consensus 425 ~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 425 KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 9999999999999999999999999999999988766555555553
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-18 Score=154.53 Aligned_cols=274 Identities=9% Similarity=-0.026 Sum_probs=194.7
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 012360 151 IVSLNILINGYIDMELVDLAREVFDEIVD---KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSAC 227 (465)
Q Consensus 151 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 227 (465)
...+..+...+...|++++|..+|+++.. .+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34456666677777777777777776633 245566666777777777777777777766642 22455566666666
Q ss_pred ccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHH-HH-HHHHcCChHHHHHH
Q 012360 228 SSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTM-IE-GLANYGLGNEALRV 305 (465)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~a~~~ 305 (465)
...|++++|...++.+.+.... +...+..+.... ++......+ .. .+...|++++|...
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------------------------CCTTSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 6666777777666666654311 111111111000 011111112 22 36677889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--C
Q 012360 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--E 383 (465)
Q Consensus 306 ~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 383 (465)
++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++.. +
T Consensus 161 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 237 (327)
T 3cv0_A 161 LHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237 (327)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 99988763 336778888999999999999999999999853 344678889999999999999999999988644 3
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC------------CchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 384 DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ------------SHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 384 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
.+..++..++..+...|++++|.+.++++++..|. ++..+..++.++...|++++|..++++..
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 36778999999999999999999999999999998 68889999999999999999999987543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-18 Score=150.23 Aligned_cols=247 Identities=8% Similarity=0.018 Sum_probs=202.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 012360 189 MHGCVKAKQPEEALELFKKMIDEGVTPDE--EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG 266 (465)
Q Consensus 189 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (465)
++.....|+++.|+..++.... ..|+. .....+.++|...|+++.|...++. ..+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 4556778999999999987654 34443 3556678899999999999986654 24567788889999999999
Q ss_pred CHHHHHHHHhcCC----CC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012360 267 SLEEALVTFYKTD----CK-DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLF 341 (465)
Q Consensus 267 ~~~~a~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 341 (465)
+.++|++.++++. .| +...+..+...+...|++++|.+.+++ +.+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999998753 24 566777888999999999999999987 457788999999999999999999999
Q ss_pred HHhhcCCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 342 RRMGGVYRVQPTIEHF---VCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 342 ~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
+++.+. .|+.... ..++..+...|++++|..+|+++.. ++++..++.++.++.+.|++++|++.++++++..
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999854 3553211 2233445556999999999998854 3477789999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHhhcCChHH-HHHHHHHHHHhc
Q 012360 417 NQSHEAYVLLSNFYALEGHWTE-VAEARRNMKELQ 450 (465)
Q Consensus 417 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~ 450 (465)
|+++.++..++.++...|+.++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999986 578888887653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.79 E-value=8.4e-16 Score=153.02 Aligned_cols=348 Identities=11% Similarity=0.091 Sum_probs=266.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCC--CCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHH
Q 012360 53 NTLMSIYNDFSDSGEVLILFKQLIFEGI--VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYA 130 (465)
Q Consensus 53 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 130 (465)
...+++|...|.+.+|+++|++..-.+- .-+...-+.++.+..+. +..+..+..+..... ....+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHH
Confidence 4456678888888999999988874321 01223444455555555 445555555444321 1344677888
Q ss_pred hCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 012360 131 KCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210 (465)
Q Consensus 131 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 210 (465)
..|.+++|..+|++.+ -.....+.+ +-..+++++|.++.++.. +..+|..+..++...|++++|++.|.+.
T Consensus 1061 ~lglyEEAf~IYkKa~--~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFD--VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred hCCCHHHHHHHHHHcC--CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 8999999999999974 122222223 227889999999998774 4678889999999999999999999664
Q ss_pred cCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHH
Q 012360 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMI 290 (465)
Q Consensus 211 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~ 290 (465)
-|...|..++.++.+.|++++|.+++....+.. +++...+.++.+|++.+++++...+. ..++...|..+.
T Consensus 1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVG 1202 (1630)
T ss_pred ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHH
Confidence 366788889999999999999999999888765 34444456999999999998655553 345667777899
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCH
Q 012360 291 EGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLL 370 (465)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 370 (465)
..|...|++++|..+|... ..|..+..++.+.|++++|.+.+++.. +..+|..+..+|...|++
T Consensus 1203 d~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHH
Confidence 9999999999999999984 488999999999999999999999874 347899999999999999
Q ss_pred HHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhc--CChHHHHHHHH
Q 012360 371 YQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALE--GHWTEVAEARR 444 (465)
Q Consensus 371 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 444 (465)
..|......+.. ++..+..++..|.+.|.+++|+.+++..+.++|.+...|..|+.+|.+. ++..++.++|.
T Consensus 1267 ~LA~~cgl~Iiv--~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1267 RLAQMCGLHIVV--HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHhhhc--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999998776543 4556778999999999999999999999999999999998888888765 34444554444
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.7e-18 Score=153.17 Aligned_cols=257 Identities=14% Similarity=0.059 Sum_probs=168.1
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHhh--CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhc---CChHHHHHHHHHHH
Q 012360 119 LNMENALLLMYAKCKEMDEALRLFDEM--GSRRNIVSLNILINGYIDMELVDLAREVFDEIVD---KDIVLWRSMMHGCV 193 (465)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 193 (465)
...+..+...+.+.|++++|...|+++ ..+.+..+|..+...+...|++++|.+.|++... .+..++..+...|.
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 344666777777777777777777776 2233556777777777788888888888877643 35678888888899
Q ss_pred HcCChhHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHhccchhhHhHHHHHHHHHHcCCC-CChhHHHHHHHH
Q 012360 194 KAKQPEEALELFKKMIDEGVTPD-----------EEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT-QDAFVKTALIDM 261 (465)
Q Consensus 194 ~~g~~~~a~~~~~~~~~~~~~~~-----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 261 (465)
..|++++|...++++.+.. |+ ...+..+...+...|++++|..+++++.+.... .+..++..+...
T Consensus 145 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 9999999999998887742 22 122334467788899999999999998886422 156677777777
Q ss_pred HHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 012360 262 YSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEG 337 (465)
Q Consensus 262 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a 337 (465)
|...|++++|...|+++. +.+..+|..+...|...|++++|...|+++.+. .| +..++..+..+|...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHH
Confidence 777777777777776644 335567777777777777777777777777665 33 356667777777777777777
Q ss_pred HHHHHHhhcCCCC--C--------CChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 012360 338 CQLFRRMGGVYRV--Q--------PTIEHFVCLVDLLSRAGLLYQAEEFIKI 379 (465)
Q Consensus 338 ~~~~~~~~~~~~~--~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 379 (465)
...|+++.+...- . .+...|..+..++...|+.+.+.++.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 7777776532100 0 0234555555556666666555555544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-16 Score=148.52 Aligned_cols=383 Identities=10% Similarity=-0.022 Sum_probs=235.0
Q ss_pred CCcchhhhHHHHHHHccCChHHHHHHhccCC-----------CC-CcccHHHHHHHHHhcCChhHHHHHHHHHHHc----
Q 012360 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMP-----------FR-DVGSWNTLMSIYNDFSDSGEVLILFKQLIFE---- 78 (465)
Q Consensus 15 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---- 78 (465)
+.....||.|...+...|+.++|++.|++.. .+ ...+|+.+..+|...|++++|...+++....
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 3456789999999999999999999998643 12 3457999999999999999999999987642
Q ss_pred -C-CCC-chhhHHHHHHHhcc--hhhhhhhhHHHHHHHHhCCccchhhHHHHHHH---HHhCCChHHHHHHHHhh-CCCC
Q 012360 79 -G-IVA-DKITLVILFSACAR--LEKLHYGKTVHCYATKVGLEYMLNMENALLLM---YAKCKEMDEALRLFDEM-GSRR 149 (465)
Q Consensus 79 -~-~~~-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~-~~~~ 149 (465)
+ ..+ ...++.....++.. .+++++|...|++..+.. +.+...+..+..+ +...++.++|++.+++. ...|
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 1 111 23355555444443 468999999999999875 3344445444444 44568888999988876 3344
Q ss_pred -CchhHHHHHHHHH----hcCChHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 012360 150 -NIVSLNILINGYI----DMELVDLAREVFDEIVD---KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMV 221 (465)
Q Consensus 150 -~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 221 (465)
+..++..+...+. ..+++++|.+.+++... .+..++..+...|...|++++|...+++..+.. +-+..++.
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 4455655555544 35678899999988743 367789999999999999999999999998863 22445555
Q ss_pred HHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCC
Q 012360 222 SVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGL 298 (465)
Q Consensus 222 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 298 (465)
.+...|...+.... ... ...........+.++.|...|++.. +.+...+..+...+...|+
T Consensus 286 ~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 286 QIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc
Confidence 55444432211111 000 0001111111233566777766543 3456788899999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 012360 299 GNEALRVFYQMERKGIKPNEA--TFVSVLA-ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375 (465)
Q Consensus 299 ~~~a~~~~~~m~~~g~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 375 (465)
+++|...|++..+....|... .+..+.. .....|++++|+..|++..+ +.|+........ ..+.+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~ 417 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQK 417 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHH
Confidence 999999999998874333221 2233332 23467999999999999984 345533222222 23334
Q ss_pred HHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 012360 376 FIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLS 427 (465)
Q Consensus 376 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 427 (465)
+++.... +.+..+|..++..+...|++++|++.|+++++.+|.+|.+...++
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 4443321 347789999999999999999999999999999988887665554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-16 Score=141.71 Aligned_cols=257 Identities=14% Similarity=0.047 Sum_probs=172.4
Q ss_pred chhhHHHHHHHHHhCCChHHHHHHHHhh--CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhc---CChHHHHHHHHHH
Q 012360 118 MLNMENALLLMYAKCKEMDEALRLFDEM--GSRRNIVSLNILINGYIDMELVDLAREVFDEIVD---KDIVLWRSMMHGC 192 (465)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 192 (465)
+...+..+...+...|++++|..+|+++ ..+.+..++..+...+...|++++|.+.+++... .+..++..+...+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 3344556666777777777777777776 2233555667777777777777777777777633 3567788888888
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HhccchhhHhHHHHHHHHHHcCCCCChhHHHH
Q 012360 193 VKAKQPEEALELFKKMIDEGVTPDEEVMVSV--------------LS-ACSSLSNLQYGRLVHRFILQNNITQDAFVKTA 257 (465)
Q Consensus 193 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 257 (465)
...|++++|...++++.+.... +...+..+ .. .+...|++++|...++.+.+.. +.+..++..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 8899999999999888875322 22222222 22 3778889999999999888765 345677777
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 012360 258 LIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLI 334 (465)
Q Consensus 258 l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~ 334 (465)
+...+...|++++|...++++. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccH
Confidence 7778888888888877776644 2345567777777777777777777777766652 22456666777777777777
Q ss_pred HHHHHHHHHhhcCCCCCC-------------ChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 012360 335 TEGCQLFRRMGGVYRVQP-------------TIEHFVCLVDLLSRAGLLYQAEEFIKIM 380 (465)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 380 (465)
++|...++++... .| +...+..+..++.+.|++++|..++++.
T Consensus 257 ~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 257 DLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7777777776642 12 2455666666666666666666666544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-16 Score=147.51 Aligned_cols=376 Identities=9% Similarity=-0.073 Sum_probs=217.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhh---hhhhHHHHHHHHhCCccchhhHHHHHHHHHhC
Q 012360 56 MSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKL---HYGKTVHCYATKVGLEYMLNMENALLLMYAKC 132 (465)
Q Consensus 56 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 132 (465)
...+.+.|++++|.+.|++..+.| +...+..+...+...|+. ++|..+|+...+. +...+..+...+...
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 334444555555555555554443 112222233333334444 4555555554432 233333344433333
Q ss_pred C-----ChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHH---HHHHHHHhh-cCChHHHHHHHHHHHHcCChhHHHH
Q 012360 133 K-----EMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDL---AREVFDEIV-DKDIVLWRSMMHGCVKAKQPEEALE 203 (465)
Q Consensus 133 g-----~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~ 203 (465)
| ++++|...|++.-..-+..++..|...|...+..++ +.+.+.... ..+...+..+...|...+.++++..
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHH
Confidence 3 445555555554112222344445555544433222 233333332 2245566666677777665555544
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhccch---hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhc----CCHHHHHHHHh
Q 012360 204 LFKKMIDEGVTPDEEVMVSVLSACSSLS---NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC----GSLEEALVTFY 276 (465)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~ 276 (465)
....+.+.-...+...+..+...|...| +.++|...|+...+.| +++...+..+...|... +++++|...|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 4333332212222235666666666677 7778888888777776 34444445566666554 68888888887
Q ss_pred cCCCCChhhHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHhhcCC
Q 012360 277 KTDCKDVVTWTTMIEG-L--ANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG-----LITEGCQLFRRMGGVY 348 (465)
Q Consensus 277 ~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~ 348 (465)
+..+.++..+..+... + ...+++++|..+|++..+.| +...+..+...|. .| ++++|..+|++.. .
T Consensus 242 ~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~- 315 (452)
T 3e4b_A 242 KIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G- 315 (452)
T ss_dssp HHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T-
T ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C-
Confidence 7663356677777766 3 45789999999999988876 5667777777776 45 9999999999887 2
Q ss_pred CCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhCCCCCccchHHHHHHHHHh----cCChHHHHHHHHHHHHhCCCCc
Q 012360 349 RVQPTIEHFVCLVDLLSR----AGLLYQAEEFIKIMPAEDKFISYKALLSACIT----YSEFDLGKKVANNMMKLGNQSH 420 (465)
Q Consensus 349 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~ 420 (465)
-+...+..|...|.. ..++++|.++|++....+++.....|...|.. ..+.++|...|+++.+.++...
T Consensus 316 ---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a 392 (452)
T 3e4b_A 316 ---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEA 392 (452)
T ss_dssp ---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHH
T ss_pred ---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 356677778877776 34899999999988777788888888888874 4589999999999999886655
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 421 EAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 421 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
......+......++..+|..+.++..+
T Consensus 393 ~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 393 NDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4344444444455677778888887654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-16 Score=136.20 Aligned_cols=228 Identities=10% Similarity=-0.045 Sum_probs=146.6
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCC--CChhHHHHHH
Q 012360 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT--QDAFVKTALI 259 (465)
Q Consensus 182 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 259 (465)
...+..+...+...|++++|...|+++.+.. .+...+..+...+...|++++|...++...+.... ++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------ 76 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------ 76 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH------
Confidence 3456667777777777777777777777665 55666666667777777777777777766553211 0100
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012360 260 DMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQ 339 (465)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 339 (465)
.....+..+...+...|++++|...+++..+. .|+. ..+...|++++|..
T Consensus 77 ---------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 77 ---------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELK 126 (258)
T ss_dssp ---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHH
Confidence 00234455555566666666666666666554 3332 23445566677777
Q ss_pred HHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 012360 340 LFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417 (465)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 417 (465)
.++++... .+.+...+..+...+...|++++|.+.++++.. +.+..+|..++..+...|++++|+..++++++..|
T Consensus 127 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 127 KAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 77776642 223455666667777777777777777766533 23456677777777777777777777777777777
Q ss_pred CCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 418 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
+++..+..++.++...|++++|...+++..+.
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 77777777777777777777777777766543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-16 Score=136.64 Aligned_cols=235 Identities=12% Similarity=0.041 Sum_probs=178.3
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHhhc--CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC--CCC----HHHHHH
Q 012360 151 IVSLNILINGYIDMELVDLAREVFDEIVD--KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV--TPD----EEVMVS 222 (465)
Q Consensus 151 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 222 (465)
...+..+...+...|++++|...|++... .+...+..+...+...|++++|...+++..+... .|+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45678889999999999999999998743 6788999999999999999999999999887421 122 456667
Q ss_pred HHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHH
Q 012360 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEA 302 (465)
Q Consensus 223 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 302 (465)
+...+...|++++|...++.+.+.. |+. ..+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~--------------------------------------~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA--------------------------------------DILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH--------------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh--------------------------------------HHHHHHhHHHHH
Confidence 7777777777777777777776643 221 224445667777
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012360 303 LRVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 303 ~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (465)
...++++... .|+ ...+..+...+...|++++|...++++.+. .+.+...+..+..++...|++++|...+++..
T Consensus 125 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 125 LKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7777777765 343 456777778888888888888888888753 24456778888888888888888888888764
Q ss_pred C--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhC------CCCchhHHHHHHH
Q 012360 382 A--EDKFISYKALLSACITYSEFDLGKKVANNMMKLG------NQSHEAYVLLSNF 429 (465)
Q Consensus 382 ~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 429 (465)
. +.+...|..+...+...|++++|...++++++.. |.+..++..+..+
T Consensus 201 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 3 3356778888999999999999999999999988 7777666655543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-16 Score=132.25 Aligned_cols=195 Identities=16% Similarity=0.062 Sum_probs=152.3
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 012360 249 TQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSV 324 (465)
Q Consensus 249 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l 324 (465)
+++...+..+...+...|++++|...|++.. +.+...+..+...+.+.|++++|...+++..+. .| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 4566677778888888888888888888754 336678888888899999999999999998877 45 45778888
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCccchHHHH
Q 012360 325 LAACRHS-----------GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDKFISYKAL 392 (465)
Q Consensus 325 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l 392 (465)
..++... |++++|+..++++.+. .+.+...+..+..++...|++++|...|++... ..++..+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8888888 9999999999999853 234677888999999999999999999987632 2567788999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 393 LSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
..++...|++++|+..|+++++..|+++.++..++.++.+.|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999988653
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-18 Score=166.96 Aligned_cols=145 Identities=10% Similarity=0.039 Sum_probs=122.5
Q ss_pred cchhhhHHHHHHHccCChHHHHHHhccCC-------CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHH
Q 012360 17 DIYVGNSLIHFYGRMALFTDARVLFDKMP-------FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVI 89 (465)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 89 (465)
-..+||+||++||+.|++++|..+|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34589999999999999999999997753 68999999999999999999999999999999999999999999
Q ss_pred HHHHhcchhhh-hhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh--CCCCC------chhHHHHHHH
Q 012360 90 LFSACARLEKL-HYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM--GSRRN------IVSLNILING 160 (465)
Q Consensus 90 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~------~~~~~~l~~~ 160 (465)
+|.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+. .+++..+++ +..|+ ..+...|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 99999999985 78999999999999999999999998776654 444445555 22222 4455566677
Q ss_pred HHhcC
Q 012360 161 YIDME 165 (465)
Q Consensus 161 ~~~~~ 165 (465)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 77554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-15 Score=133.17 Aligned_cols=240 Identities=10% Similarity=-0.073 Sum_probs=163.5
Q ss_pred cCChhHHHHHHHHHHHcCCC---CCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 012360 195 AKQPEEALELFKKMIDEGVT---PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271 (465)
Q Consensus 195 ~g~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 271 (465)
.|++++|+..++++.+.... .+..++..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 34556666666665553211 123344555555566666666666666665543 33455666666666777777777
Q ss_pred HHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 012360 272 LVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348 (465)
Q Consensus 272 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 348 (465)
...|+++. +.+...+..+...+...|++++|...++++.+. .|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 76666544 235667778888888888889999988888876 455444444555556778999999999887753
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC------ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchh
Q 012360 349 RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAED------KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422 (465)
Q Consensus 349 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 422 (465)
.+++... ..++..+...++.++|.+.++...... +..++..++..+...|++++|...++++++.+|++..
T Consensus 174 -~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 250 (275)
T 1xnf_A 174 -SDKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV- 250 (275)
T ss_dssp -SCCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH-
T ss_pred -CCcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH-
Confidence 2334333 347777788888889999888776532 2577888999999999999999999999999987755
Q ss_pred HHHHHHHHhhcCChHHHHHHH
Q 012360 423 YVLLSNFYALEGHWTEVAEAR 443 (465)
Q Consensus 423 ~~~l~~~~~~~g~~~~a~~~~ 443 (465)
..+.++...|++++|.+.+
T Consensus 251 --~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 --EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHhhHHHH
Confidence 3467788889999988765
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-17 Score=157.84 Aligned_cols=147 Identities=14% Similarity=0.077 Sum_probs=113.6
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHh-------hcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 012360 151 IVSLNILINGYIDMELVDLAREVFDEI-------VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSV 223 (465)
Q Consensus 151 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 223 (465)
..||+++|++|++.|++++|.++|++| ..||+.+||+||++|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 347888888888888888888888665 3579999999999999999999999999999999999999999999
Q ss_pred HHHhccchhh-HhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----ChhhHHHHHHHHHHcC
Q 012360 224 LSACSSLSNL-QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-----DVVTWTTMIEGLANYG 297 (465)
Q Consensus 224 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~ 297 (465)
|.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++......+ .+.+...|...|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999998874 788899999999999999999998887776665444444443333321 1334444555555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.2e-15 Score=129.75 Aligned_cols=245 Identities=7% Similarity=-0.075 Sum_probs=121.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhc--C-ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhc
Q 012360 154 LNILINGYIDMELVDLAREVFDEIVD--K-DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPD--EEVMVSVLSACS 228 (465)
Q Consensus 154 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~ 228 (465)
+......+...|++++|...|++..+ | +...+..+...+...|++++|+..+++..+.+..|+ ...|..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 33444455555555555555555422 1 233455555555555555555555555554221111 112444444445
Q ss_pred cchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 012360 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQ 308 (465)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 308 (465)
..|++++|...++...+.. +.+..++..+..+| ...|++++|...+++
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~-------------------------------~~~~~~~~A~~~~~~ 133 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYF-------------------------------YNKGNFPLAIQYMEK 133 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH-------------------------------HHTTCHHHHHHHHGG
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHH-------------------------------HHccCHHHHHHHHHH
Confidence 5555555555555554432 22233444444444 444444444444444
Q ss_pred HHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHhCCC--
Q 012360 309 MERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGL---LYQAEEFIKIMPA-- 382 (465)
Q Consensus 309 m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-- 382 (465)
..+. .| +...+..+...+...+++++|...|+++.+. .+.+...+..+..++...|+ +++|...+++...
T Consensus 134 al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 134 QIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp GCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred Hhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 4333 22 2333333331222233555555555555431 12223444444445554444 4444444443321
Q ss_pred --CCc------cchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC
Q 012360 383 --EDK------FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434 (465)
Q Consensus 383 --~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 434 (465)
.|+ ..+|..+...|...|++++|.+.++++++.+|+++.++..+.......+
T Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 210 APGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred hcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 122 1356778888888999999999999999999999887777776665544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-14 Score=123.59 Aligned_cols=226 Identities=10% Similarity=-0.067 Sum_probs=126.5
Q ss_pred ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc----chhhHhHHHHHHHHHHcCCCCChhHHH
Q 012360 181 DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS----LSNLQYGRLVHRFILQNNITQDAFVKT 256 (465)
Q Consensus 181 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 256 (465)
+..++..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4566667777777777888888887777762 234455556666666 777777777777776654 455555
Q ss_pred HHHHHHHh----cCCHHHHHHHHhcCCC-CChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012360 257 ALIDMYSK----CGSLEEALVTFYKTDC-KDVVTWTTMIEGLAN----YGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327 (465)
Q Consensus 257 ~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 327 (465)
.+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|...|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 66666666 6666666666554332 244455555555555 555555555555555543 33444444455
Q ss_pred HHh----cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhCCCCCccchHHHHHHHHHh-
Q 012360 328 CRH----SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR----AGLLYQAEEFIKIMPAEDKFISYKALLSACIT- 398 (465)
Q Consensus 328 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~- 398 (465)
+.. .+++++|+..|++..+. .+...+..+...|.. .+++++|.+.+++.....+...+..+...|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 544 55555555555555432 123444445555555 55555555555544333334444445555554
Q ss_pred ---cCChHHHHHHHHHHHHhCCCC
Q 012360 399 ---YSEFDLGKKVANNMMKLGNQS 419 (465)
Q Consensus 399 ---~~~~~~a~~~~~~~~~~~p~~ 419 (465)
.+++++|++.++++.+.+|++
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHH
Confidence 555555555555555555443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.6e-14 Score=123.19 Aligned_cols=224 Identities=10% Similarity=-0.055 Sum_probs=183.0
Q ss_pred CHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CChhhHHHHH
Q 012360 216 DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK----CGSLEEALVTFYKTDC-KDVVTWTTMI 290 (465)
Q Consensus 216 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~ 290 (465)
+..++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|...|++..+ .++..+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4556667777788888999999999988883 345677788888888 8999999999987553 3677888888
Q ss_pred HHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHH
Q 012360 291 EGLAN----YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRH----SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362 (465)
Q Consensus 291 ~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 362 (465)
..|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 88888 899999999999988874 66778888888888 89999999999998864 2 5667778888
Q ss_pred HHHh----cCCHHHHHHHHHhCCCCCccchHHHHHHHHHh----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhh--
Q 012360 363 LLSR----AGLLYQAEEFIKIMPAEDKFISYKALLSACIT----YSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL-- 432 (465)
Q Consensus 363 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 432 (465)
.|.. .+++++|.+.+++.....++..+..+...+.. .+++++|++.++++.+.+| +..+..++.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8887 88999999999887665667788888888888 8999999999999988876 5668888999988
Q ss_pred --cCChHHHHHHHHHHHHhcC
Q 012360 433 --EGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 433 --~g~~~~a~~~~~~~~~~~~ 451 (465)
.+++++|..++++..+.+.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHcCC
Confidence 8999999999988776553
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-15 Score=139.00 Aligned_cols=343 Identities=9% Similarity=-0.024 Sum_probs=236.2
Q ss_pred HHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCCh---HHHHHHHHhhCCCCCchhHHHHHHHHHhcC-
Q 012360 90 LFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM---DEALRLFDEMGSRRNIVSLNILINGYIDME- 165 (465)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~- 165 (465)
+...+.+.|++++|.++|+...+.| +...+..+...|...|+. ++|...|++.-.. +...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCC
Confidence 5667778999999999999998876 333444566666777888 9999999998423 7777888877666655
Q ss_pred ----ChHHHHHHHHHhhcC-ChHHHHHHHHHHHHcCChh---HHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHH
Q 012360 166 ----LVDLAREVFDEIVDK-DIVLWRSMMHGCVKAKQPE---EALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237 (465)
Q Consensus 166 ----~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 237 (465)
+.++|...|++...+ +...+..+...|...+..+ ++.+.+......|. ......+...|...+.++++.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCH
Confidence 788999999988665 4557778888888776544 45555666555553 334555666666666555555
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHhcCCC---CChhhHHHHHHHHHHc----CChHHHHHHHH
Q 012360 238 LVHRFILQNNITQDAFVKTALIDMYSKCG---SLEEALVTFYKTDC---KDVVTWTTMIEGLANY----GLGNEALRVFY 307 (465)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~----~~~~~a~~~~~ 307 (465)
.....+.+.-...++..+..+...|...| +.++|++.|++..+ ++...+..+...|... +++++|..+|+
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 44443333322334458888999999999 99999999987553 3444446777777655 79999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcC-----CHHHHHHHHHh
Q 012360 308 QMERKGIKPNEATFVSVLAA-C--RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG-----LLYQAEEFIKI 379 (465)
Q Consensus 308 ~m~~~g~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~ 379 (465)
+.. .| +...+..+... + ...+++++|+.+|++..+. + +...+..|...|. .| ++++|.++|++
T Consensus 242 ~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 242 KIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 987 33 45566666666 4 5689999999999999864 3 6677788888887 55 99999999999
Q ss_pred CCCCCccchHHHHHHHHHh----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhh----cCChHHHHHHHHHHHHhcC
Q 012360 380 MPAEDKFISYKALLSACIT----YSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL----EGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 380 ~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 451 (465)
.. ..++..+..|...|.. ..++++|...|+++.+.+ ++.....|+.+|.. ..+.++|..++++..+.|.
T Consensus 313 Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 313 AV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred Hh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 98 7788888889888876 349999999999998865 45568899999875 4689999999998877664
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-14 Score=120.13 Aligned_cols=196 Identities=12% Similarity=0.003 Sum_probs=137.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012360 252 AFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328 (465)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 328 (465)
...+..+...+...|++++|...|+++. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 4455556666666666666666665543 2345566667777777777777777777776652 23456677777777
Q ss_pred Hhc-CCHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHH
Q 012360 329 RHS-GLITEGCQLFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDL 404 (465)
Q Consensus 329 ~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 404 (465)
... |++++|...++++.+. +..| +...+..+..++...|++++|.+.++++.. +.+...+..++..+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 778 8888888888887752 2223 356667777778888888888887776543 2345667777788888888888
Q ss_pred HHHHHHHHHHhCC-CCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 405 GKKVANNMMKLGN-QSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 405 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
|...++++++..| .++..+..++..+...|+.++|..+++.+.+.
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8888888888888 77777777777888888888888888877654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-14 Score=124.98 Aligned_cols=224 Identities=10% Similarity=0.035 Sum_probs=164.9
Q ss_pred HHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC----hhhHHHHHHHHHHc
Q 012360 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--KD----VVTWTTMIEGLANY 296 (465)
Q Consensus 223 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~ 296 (465)
....+...|++++|...++.+.+.. +.+...+..+..+|...|++++|...+++... ++ ...|..+...+...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3344455555555555555555543 22333555566666666666666666655432 22 22477788888899
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 012360 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEF 376 (465)
Q Consensus 297 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 376 (465)
|++++|...+++..+.. +.+...+..+...+...|++++|+..++++.+. .+.+...+..+...+...+++++|.+.
T Consensus 88 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988762 234578899999999999999999999999863 344677777777344455699999999
Q ss_pred HHhCCC-CC-ccchHHHHHHHHHhcCC---hHHHHHHHHHHHHhC---CCC-----chhHHHHHHHHhhcCChHHHHHHH
Q 012360 377 IKIMPA-ED-KFISYKALLSACITYSE---FDLGKKVANNMMKLG---NQS-----HEAYVLLSNFYALEGHWTEVAEAR 443 (465)
Q Consensus 377 ~~~~~~-~~-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~a~~~~ 443 (465)
++++.. .| +...+..+...+...|+ +++|+..++++++.. |+. ..+|..++..|...|++++|..++
T Consensus 165 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 998754 33 56778888888888888 899999999999865 442 257889999999999999999999
Q ss_pred HHHHHhc
Q 012360 444 RNMKELQ 450 (465)
Q Consensus 444 ~~~~~~~ 450 (465)
++..+..
T Consensus 245 ~~al~~~ 251 (272)
T 3u4t_A 245 KNILALD 251 (272)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9987654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-15 Score=126.98 Aligned_cols=203 Identities=12% Similarity=0.046 Sum_probs=99.3
Q ss_pred HHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCCh
Q 012360 223 VLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLG 299 (465)
Q Consensus 223 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 299 (465)
+...+...|+++.|...++++.+.. +.+...+..+..++...|++++|...|+++. +.+...+..+...+...|++
T Consensus 29 ~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 107 (243)
T 2q7f_A 29 QMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMY 107 (243)
T ss_dssp -------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccH
Confidence 3333444444444444444444322 2233344444444444444444444444322 12344455555555556666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 012360 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379 (465)
Q Consensus 300 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 379 (465)
++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.+++
T Consensus 108 ~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (243)
T 2q7f_A 108 KEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAA 184 (243)
T ss_dssp HHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666666655542 224455555566666666666666666666532 223445555556666666666666666655
Q ss_pred CCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 012360 380 MPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429 (465)
Q Consensus 380 ~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 429 (465)
+.. +.+..++..+...+...|++++|...++++++..|+++..+..+...
T Consensus 185 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 185 VTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 432 22344556666666666666666666666666666666555444433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.1e-14 Score=123.08 Aligned_cols=193 Identities=12% Similarity=-0.014 Sum_probs=104.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 012360 255 KTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331 (465)
Q Consensus 255 ~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 331 (465)
+..+...+...|++++|...|+++. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 118 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHH
Confidence 3444444444444444444444332 1233445555555555555555555555555442 22344555555556666
Q ss_pred CCHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CccchHHHHHHHHHhcCChHHHHHH
Q 012360 332 GLITEGCQLFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-E-DKFISYKALLSACITYSEFDLGKKV 408 (465)
Q Consensus 332 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~ 408 (465)
|++++|...++++... +..| +...+..+...+...|++++|.+.++++.. . .+...+..++..+...|++++|...
T Consensus 119 g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 197 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQY 197 (252)
T ss_dssp TCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666665541 1223 344455555566666666666666655432 1 2344555566666666666666666
Q ss_pred HHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 409 ANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 409 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
++++.+..|.+...+..++..+...|++++|..+++++.+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 198 YDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666655543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-14 Score=130.24 Aligned_cols=246 Identities=11% Similarity=0.043 Sum_probs=179.8
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchh-hHhHHHHHHHHHHcCCCCChhHHHHHHH
Q 012360 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSN-LQYGRLVHRFILQNNITQDAFVKTALID 260 (465)
Q Consensus 182 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 260 (465)
...|..+...+...|++++|++.+++.++.. +-+...|..+..++...|+ +++|+..++++++.. +-+..+|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3456666666677777777777777776642 2245556666666666775 777777777777654 335667777777
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh-cCCHH
Q 012360 261 MYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRH-SGLIT 335 (465)
Q Consensus 261 ~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~-~~~~~ 335 (465)
++...|++++|+..|+++. ..+...|..+..++...|++++|+..++++++. .| +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 7777777777777777654 346678888888888889999999999998887 44 56788888888888 56557
Q ss_pred HH-----HHHHHHhhcCCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-ccchHHHHHHHHHhcC-------
Q 012360 336 EG-----CQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG--LLYQAEEFIKIMPAED-KFISYKALLSACITYS------- 400 (465)
Q Consensus 336 ~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~------- 400 (465)
+| +..++++... .+-+...|..+..++...| ++++|.+.+.++...| +...+..++..|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 77 4788888752 2345778888888888888 6889998888873333 5567788888888764
Q ss_pred -C-hHHHHHHHHHH-HHhCCCCchhHHHHHHHHhhc
Q 012360 401 -E-FDLGKKVANNM-MKLGNQSHEAYVLLSNFYALE 433 (465)
Q Consensus 401 -~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 433 (465)
+ .++|+++|+++ ++.+|.....|..++..+...
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58999999999 899999999888888877654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.5e-14 Score=121.64 Aligned_cols=208 Identities=10% Similarity=0.054 Sum_probs=140.9
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHH
Q 012360 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261 (465)
Q Consensus 182 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (465)
...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------
Confidence 4556666666677777777777777666542 2234455555555555555666555555555432
Q ss_pred HHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 012360 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQL 340 (465)
Q Consensus 262 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 340 (465)
+.+...+..+...+...|++++|..+++++.+.+..|+ ...+..+...+...|++++|...
T Consensus 102 ------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 102 ------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 12344555566666667777777777777665323453 45667777778888888888888
Q ss_pred HHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 012360 341 FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418 (465)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 418 (465)
++++.+. .+.+...+..+...+...|++++|...++.+.. +.+...+..+...+...|++++|.+.++++.+..|+
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 8887753 233567777888888888888888888877643 235566778888888999999999999999999998
Q ss_pred CchhHH
Q 012360 419 SHEAYV 424 (465)
Q Consensus 419 ~~~~~~ 424 (465)
++....
T Consensus 242 ~~~~~~ 247 (252)
T 2ho1_A 242 SLEYQE 247 (252)
T ss_dssp SHHHHH
T ss_pred CHHHHH
Confidence 877443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=6.2e-15 Score=125.54 Aligned_cols=198 Identities=12% Similarity=0.059 Sum_probs=156.2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012360 250 QDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLA 326 (465)
Q Consensus 250 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 326 (465)
.....+..+...+...|++++|...|+++. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 445677788888999999999999998764 3467788889999999999999999999998873 336778888999
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHH
Q 012360 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDL 404 (465)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 404 (465)
.+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++.. +.+...+..++..+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999863 345678889999999999999999999998754 3467788999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 405 GKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 405 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
|+..++++++..|.++.++..++.++...|++++|...++++.+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999987654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.1e-14 Score=118.76 Aligned_cols=194 Identities=13% Similarity=-0.034 Sum_probs=83.8
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012360 149 RNIVSLNILINGYIDMELVDLAREVFDEIVD---KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLS 225 (465)
Q Consensus 149 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 225 (465)
++...+..+...+.+.|++++|...|++... .+...+..+...+.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3444555555555555555555555555422 134455555555555555555555555555432 112333334444
Q ss_pred Hhccc-----------hhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 012360 226 ACSSL-----------SNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLA 294 (465)
Q Consensus 226 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 294 (465)
++... |++++|...+++..+.. +.+...+..+...+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------------------------------P~~~~~~~~lg~~~~ 129 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN--------------------------------PRYAPLHLQRGLVYA 129 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--------------------------------cccHHHHHHHHHHHH
Confidence 44333 33333333333333221 112334444444455
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 012360 295 NYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAE 374 (465)
Q Consensus 295 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 374 (465)
..|++++|...|++..+.. .+...+..+..++...|++++|+..|+++.+. .+.+...+..+..++...|++++|.
T Consensus 130 ~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 130 LLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------
T ss_pred HcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHH
Confidence 5555555555555555443 34444555555555555555555555555431 1223444445555555555555555
Q ss_pred HHHHh
Q 012360 375 EFIKI 379 (465)
Q Consensus 375 ~~~~~ 379 (465)
..+++
T Consensus 206 ~~~~~ 210 (217)
T 2pl2_A 206 RAAAL 210 (217)
T ss_dssp -----
T ss_pred HHHHH
Confidence 55444
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-14 Score=123.93 Aligned_cols=236 Identities=10% Similarity=-0.086 Sum_probs=148.9
Q ss_pred CChHHHHHHHHHhhcC-------ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHH
Q 012360 165 ELVDLAREVFDEIVDK-------DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237 (465)
Q Consensus 165 ~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 237 (465)
|++++|++.|+++... +..++..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 4555555555555331 34456666666666777777777776666642 224556666666666677777777
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 012360 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD--CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315 (465)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 315 (465)
..++.+.+.. +.+..++..+..+|...|++++|...|+++. .|+.......+..+...|++++|...+.+..... +
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~ 175 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-D 175 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-C
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 7777666653 3345666667777777777777777776654 2333333334444566688888888887776652 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCccchH
Q 012360 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT-----IEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDKFISY 389 (465)
Q Consensus 316 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~ 389 (465)
++...+ .++..+...++.++|...++++... .|. ...+..+...|...|++++|...|+++.. .| ..+
T Consensus 176 ~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~ 249 (275)
T 1xnf_A 176 KEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV--HNF 249 (275)
T ss_dssp CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--TTC
T ss_pred cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc--hhH
Confidence 333333 4666777778888888888888743 221 56777888888889999999998887654 33 223
Q ss_pred HHHHHHHHhcCChHHHHHHH
Q 012360 390 KALLSACITYSEFDLGKKVA 409 (465)
Q Consensus 390 ~~l~~~~~~~~~~~~a~~~~ 409 (465)
.....++...|++++|++.+
T Consensus 250 ~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhhHHHH
Confidence 34455677778888887766
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.4e-15 Score=136.65 Aligned_cols=164 Identities=12% Similarity=-0.016 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHcCC-----------------hHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 012360 285 TWTTMIEGLANYGL-----------------GNEALRVFYQMERK----GIKPN-EATFVSVLAACRHSGLITEGCQLFR 342 (465)
Q Consensus 285 ~~~~l~~~~~~~~~-----------------~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~ 342 (465)
++..+...|...|+ +++|...+++..+. +..+. ..++..+...+...|++++|+..++
T Consensus 168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 247 (411)
T 4a1s_A 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQ 247 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 44555555556666 66666666554331 11121 2466677777888888888888888
Q ss_pred HhhcCCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----ccchHHHHHHHHHhcCChHHHHHHHH
Q 012360 343 RMGGVYRVQPT----IEHFVCLVDLLSRAGLLYQAEEFIKIMPA----ED----KFISYKALLSACITYSEFDLGKKVAN 410 (465)
Q Consensus 343 ~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~ 410 (465)
+..+...-.++ ...+..+...|...|++++|.+.+++... .+ ...++..+...+...|++++|...++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (411)
T 4a1s_A 248 ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN 327 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77642111111 22667778888888888888888776533 11 24567778888888888888888888
Q ss_pred HHHHhCCCC------chhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 411 NMMKLGNQS------HEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 411 ~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
++++..+.. ..++..++.+|...|++++|..++++..+
T Consensus 328 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 328 RHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 888764322 33678888888888988888888887653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-13 Score=116.07 Aligned_cols=209 Identities=10% Similarity=-0.039 Sum_probs=140.2
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHH
Q 012360 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDM 261 (465)
Q Consensus 182 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (465)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------- 72 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-------------- 72 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------------
Confidence 3455555666666666666666666655532 2233444444444555555555555555444432
Q ss_pred HHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 012360 262 YSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY-GLGNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQ 339 (465)
Q Consensus 262 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~ 339 (465)
+.+...+..+...+... |++++|...++++.+.+..|+ ...+..+..++...|++++|+.
T Consensus 73 ------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 73 ------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp ------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 12444566666777777 778888888887776333444 4567777888888888888888
Q ss_pred HHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--C-CccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 340 LFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--E-DKFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
.++++.+. .+.+...+..+...+...|++++|.+.++++.. + .+...+..+...+...|+.+.|..+++.+.+..
T Consensus 135 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 135 YLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 88888753 234577778888888888888888888887643 3 455567777777888999999999999999999
Q ss_pred CCCchhHHH
Q 012360 417 NQSHEAYVL 425 (465)
Q Consensus 417 p~~~~~~~~ 425 (465)
|+++.....
T Consensus 213 p~~~~~~~~ 221 (225)
T 2vq2_A 213 PYSEELQTV 221 (225)
T ss_dssp TTCHHHHHH
T ss_pred CCCHHHHHH
Confidence 988875443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-14 Score=134.15 Aligned_cols=287 Identities=12% Similarity=0.039 Sum_probs=159.7
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHhhc--C-C----hHHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCC-HH
Q 012360 151 IVSLNILINGYIDMELVDLAREVFDEIVD--K-D----IVLWRSMMHGCVKAKQPEEALELFKKMIDE----GVTPD-EE 218 (465)
Q Consensus 151 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~ 218 (465)
...+......+...|++++|...|++... | + ...+..+...+...|++++|...+++..+. +..|. ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34455666777778888888888877633 2 2 245667777777888888888887776542 11111 33
Q ss_pred HHHHHHHHhccchhhHhHHHHHHHHHHcCCC-C----ChhHHHHHHHHHHhcCC--------------------HHHHHH
Q 012360 219 VMVSVLSACSSLSNLQYGRLVHRFILQNNIT-Q----DAFVKTALIDMYSKCGS--------------------LEEALV 273 (465)
Q Consensus 219 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~--------------------~~~a~~ 273 (465)
++..+...+...|++++|...+++..+.... + ...++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 4555666677777777777777776553110 1 13355666666666676 666666
Q ss_pred HHhcCCC-----C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 012360 274 TFYKTDC-----K----DVVTWTTMIEGLANYGLGNEALRVFYQMERKGI-KPN----EATFVSVLAACRHSGLITEGCQ 339 (465)
Q Consensus 274 ~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~~~~~~a~~ 339 (465)
.+++... + ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 6544321 1 122455555666666666666666666543200 111 1245555566666666666666
Q ss_pred HHHHhhcCCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----ccchHHHHHHHHHhcCChHHHHH
Q 012360 340 LFRRMGGVYRVQPT----IEHFVCLVDLLSRAGLLYQAEEFIKIMPA----ED----KFISYKALLSACITYSEFDLGKK 407 (465)
Q Consensus 340 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~a~~ 407 (465)
.+++......-.++ ..++..+...|...|++++|.+.+++... .+ ...++..+...+...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66665431100011 33455556666666666666666655422 11 13345555566666666666666
Q ss_pred HHHHHHHhCCCCch------hHHHHHHHHhhcCChH
Q 012360 408 VANNMMKLGNQSHE------AYVLLSNFYALEGHWT 437 (465)
Q Consensus 408 ~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~ 437 (465)
.++++++..+.... ++..++..+...|+..
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 66666666555522 3444444444444444
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.61 E-value=6e-14 Score=113.88 Aligned_cols=164 Identities=13% Similarity=0.071 Sum_probs=139.0
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHH
Q 012360 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360 (465)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 360 (465)
++..|..+...|...|++++|+..|++..+. .| +...+..+..++.+.|++++|+..++.+... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 5567888888888999999999999988876 44 4678888889999999999999999988753 34456677788
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHH
Q 012360 361 VDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTE 438 (465)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 438 (465)
...+...++++.|.+.+.+... +.+...+..++..+...|++++|++.|+++++.+|.++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 8888899999999998887643 33667788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 012360 439 VAEARRNMKEL 449 (465)
Q Consensus 439 a~~~~~~~~~~ 449 (465)
|...+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999987654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=4.3e-14 Score=127.60 Aligned_cols=224 Identities=9% Similarity=-0.047 Sum_probs=190.5
Q ss_pred HHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC-HHHHHHHHhcCC---CCChhhHHHHHHH
Q 012360 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS-LEEALVTFYKTD---CKDVVTWTTMIEG 292 (465)
Q Consensus 217 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~---~~~~~~~~~l~~~ 292 (465)
...|..+...+...|++++|...++++++.. +-+..+|..+..++...|+ +++|+..|+++. ..+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3456667777888999999999999999875 4567889999999999997 999999999866 3467899999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHh-cCCH
Q 012360 293 LANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR-AGLL 370 (465)
Q Consensus 293 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 370 (465)
+...|++++|+..|+++.+. .| +...|..+..++...|++++|+..++++.+. .+.+...|+.+..++.. .|..
T Consensus 176 ~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999987 44 5788999999999999999999999999963 24468889999999999 6665
Q ss_pred HHH-----HHHHHhCCC-CC-ccchHHHHHHHHHhcC--ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC-------
Q 012360 371 YQA-----EEFIKIMPA-ED-KFISYKALLSACITYS--EFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG------- 434 (465)
Q Consensus 371 ~~A-----~~~~~~~~~-~~-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 434 (465)
++| ++.+++... .| +...|..+...+...| ++++|++.++++ +.+|+++.++..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 466766543 44 6778999999998888 699999999998 888999999999999999975
Q ss_pred --ChHHHHHHHHHH
Q 012360 435 --HWTEVAEARRNM 446 (465)
Q Consensus 435 --~~~~a~~~~~~~ 446 (465)
.+++|.++++++
T Consensus 331 ~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 331 EDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 258899999987
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.60 E-value=5.8e-12 Score=121.34 Aligned_cols=419 Identities=9% Similarity=0.047 Sum_probs=279.2
Q ss_pred hHHHHHhccCCcchhhhHHHHHHHccCChHHHHHHhccCC---CCCcccHHHHHHHHHhcCC---hhHHHHHHHHHHHcC
Q 012360 6 HAHVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMP---FRDVGSWNTLMSIYNDFSD---SGEVLILFKQLIFEG 79 (465)
Q Consensus 6 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~ 79 (465)
++..+... +-|...|..++..+.+.+.++.+..+|+.+. +.....|...+..-.+.++ ++.+..+|++.....
T Consensus 55 lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~ 133 (679)
T 4e6h_A 55 LNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKE 133 (679)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSS
T ss_pred HHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhc
Confidence 44555544 5689999999999999999999999999876 4456678888888888888 999999999998753
Q ss_pred -CCCchhhHHHHHHHhcchhh--------hhhhhHHHHHHHHh-CC-ccc-hhhHHHHHHHHHh---------CCChHHH
Q 012360 80 -IVADKITLVILFSACARLEK--------LHYGKTVHCYATKV-GL-EYM-LNMENALLLMYAK---------CKEMDEA 138 (465)
Q Consensus 80 -~~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~~~-~~-~~~-~~~~~~l~~~~~~---------~g~~~~A 138 (465)
..|+...|...+....+.++ .+.+.++|+..+.. |. .++ ..+|...+..... .++++.+
T Consensus 134 ~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~ 213 (679)
T 4e6h_A 134 LGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYI 213 (679)
T ss_dssp SCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHH
Confidence 13777777776665444333 24455778776653 55 443 4677777765443 3456788
Q ss_pred HHHHHhhCCCCCc---hhHHHHHHHHHh-------------cCChHHHHHHHHHh------hc---------------C-
Q 012360 139 LRLFDEMGSRRNI---VSLNILINGYID-------------MELVDLAREVFDEI------VD---------------K- 180 (465)
Q Consensus 139 ~~~~~~~~~~~~~---~~~~~l~~~~~~-------------~~~~~~a~~~~~~~------~~---------------~- 180 (465)
..+|++.-..|.. .+|......-.. ..+++.|...+.++ .. |
T Consensus 214 R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~ 293 (679)
T 4e6h_A 214 RKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPK 293 (679)
T ss_dssp HHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCC
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCC
Confidence 8999888323321 233222111111 12233444444432 00 0
Q ss_pred ----C---hHHHHHHHHHHHHcC-------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHH-HHHHHHHH
Q 012360 181 ----D---IVLWRSMMHGCVKAK-------QPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR-LVHRFILQ 245 (465)
Q Consensus 181 ----~---~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~ 245 (465)
+ ...|...+..--..+ ..+.+..+|++.+.. ++-....|.....-+...|+.+.|. .+++....
T Consensus 294 ~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~ 372 (679)
T 4e6h_A 294 PNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ 372 (679)
T ss_dssp TTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 0 123444444322222 123456678877765 3445666766666667778888886 99999887
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------------CC------------hhhHHHHHHHHHHcCChH
Q 012360 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC-------------KD------------VVTWTTMIEGLANYGLGN 300 (465)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------~~------------~~~~~~l~~~~~~~~~~~ 300 (465)
. ++.+...+...+....+.|+++.|.++|+++.. |+ ...|...+....+.|+.+
T Consensus 373 ~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~ 451 (679)
T 4e6h_A 373 C-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLA 451 (679)
T ss_dssp H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred h-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHH
Confidence 4 355666777888888889999999999887652 21 235777777778888999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 012360 301 EALRVFYQMERKGIKPNEATFVSVLAACRHS-GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKI 379 (465)
Q Consensus 301 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 379 (465)
.|..+|.+..+.-..+....|...+..-.+. ++.+.|..+|+...+. ++.+...+...++.....|+.+.|..+|+.
T Consensus 452 ~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lfer 529 (679)
T 4e6h_A 452 ASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFES 529 (679)
T ss_dssp HHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999988761112233443333333343 4589999999999864 445666777888888889999999999998
Q ss_pred CCCC-C----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 012360 380 MPAE-D----KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY 430 (465)
Q Consensus 380 ~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 430 (465)
.... + ....|...+..-.+.|+.+.+.++.+++.+..|+++. ...++.-|
T Consensus 530 al~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~-~~~f~~ry 584 (679)
T 4e6h_A 530 SIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK-LEEFTNKY 584 (679)
T ss_dssp HTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH-HHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH-HHHHHHHh
Confidence 7652 2 3456888888888899999999999999999998765 44444444
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-14 Score=129.95 Aligned_cols=261 Identities=13% Similarity=0.058 Sum_probs=166.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHhccchhhHhHHHHHHHHHHc----CC-CCChhHHHHH
Q 012360 188 MMHGCVKAKQPEEALELFKKMIDEGVTPD----EEVMVSVLSACSSLSNLQYGRLVHRFILQN----NI-TQDAFVKTAL 258 (465)
Q Consensus 188 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l 258 (465)
....+...|++++|...|+++.+.... + ...+..+...+...|+++.|...+++..+. +. +....++..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 344455555555555555555553211 1 133444445555555555555555554332 11 1113345556
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC-----CC----hhhHHHHHHHHHHcCC--------------------hHHHHHHHHHH
Q 012360 259 IDMYSKCGSLEEALVTFYKTDC-----KD----VVTWTTMIEGLANYGL--------------------GNEALRVFYQM 309 (465)
Q Consensus 259 ~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~m 309 (465)
...+...|++++|...+++..+ ++ ..++..+...+...|+ +++|...+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 6666666666666666654331 11 2255666666777777 77777777665
Q ss_pred HHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 012360 310 ERK----GIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT----IEHFVCLVDLLSRAGLLYQAEEFIKIM 380 (465)
Q Consensus 310 ~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 380 (465)
.+. +..|. ...+..+...+...|++++|...++++.+.....++ ..++..+...+...|++++|.+.+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 432 11121 346777788888899999999999887642111111 336778888899999999999988876
Q ss_pred CC----CC----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC------chhHHHHHHHHhhcCChHHHHHHHHHH
Q 012360 381 PA----ED----KFISYKALLSACITYSEFDLGKKVANNMMKLGNQS------HEAYVLLSNFYALEGHWTEVAEARRNM 446 (465)
Q Consensus 381 ~~----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~ 446 (465)
.. .+ ...++..+...+...|++++|...++++++..|.. ..++..++.+|...|++++|..++++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 42 11 14567888889999999999999999998865332 336889999999999999999999988
Q ss_pred HHh
Q 012360 447 KEL 449 (465)
Q Consensus 447 ~~~ 449 (465)
.+.
T Consensus 330 ~~~ 332 (338)
T 3ro2_A 330 LEI 332 (338)
T ss_dssp HHC
T ss_pred HHH
Confidence 654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.3e-14 Score=129.09 Aligned_cols=295 Identities=11% Similarity=-0.040 Sum_probs=180.3
Q ss_pred hHHHHHHHhcchhhhhhhhHHHHHHHHhCCccc---hhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHH
Q 012360 86 TLVILFSACARLEKLHYGKTVHCYATKVGLEYM---LNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYI 162 (465)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 162 (465)
.+......+...|++++|...++.+.+.+.... ..++..+...+...|++++|...+++.
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a----------------- 73 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD----------------- 73 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-----------------
Confidence 344444555555666666666666655431110 234445555555555555555555443
Q ss_pred hcCChHHHHHHHHHhh--cCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhccchh---
Q 012360 163 DMELVDLAREVFDEIV--DKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV-TPD----EEVMVSVLSACSSLSN--- 232 (465)
Q Consensus 163 ~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~--- 232 (465)
.++..... .....++..+...|...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 74 --------l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 145 (406)
T 3sf4_A 74 --------LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFG 145 (406)
T ss_dssp --------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred --------HHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCccc
Confidence 00000000 01234455566666666666666666666554210 011 2345555666666777
Q ss_pred -----------------hHhHHHHHHHHHHc----CC-CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC---
Q 012360 233 -----------------LQYGRLVHRFILQN----NI-TQDAFVKTALIDMYSKCGSLEEALVTFYKTDC-----KD--- 282 (465)
Q Consensus 233 -----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~--- 282 (465)
++.|...++...+. +. +....++..+...|...|++++|...+++... ++
T Consensus 146 ~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 225 (406)
T 3sf4_A 146 CPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA 225 (406)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHH
Confidence 77777777665442 11 11234677788888888888888888876542 12
Q ss_pred -hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC---
Q 012360 283 -VVTWTTMIEGLANYGLGNEALRVFYQMERK----GIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT--- 353 (465)
Q Consensus 283 -~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 353 (465)
..++..+...+...|++++|...+++..+. +..+. ..++..+...+...|++++|...++++.....-.++
T Consensus 226 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 305 (406)
T 3sf4_A 226 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIG 305 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHH
Confidence 237888889999999999999999987643 11111 457788889999999999999999998743111122
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----ccchHHHHHHHHHhcCChHHH
Q 012360 354 -IEHFVCLVDLLSRAGLLYQAEEFIKIMPA----ED----KFISYKALLSACITYSEFDLG 405 (465)
Q Consensus 354 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~a 405 (465)
..++..+...|...|++++|.+.+++... .+ ...++..+...+...|+....
T Consensus 306 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 306 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 55778899999999999999999987642 11 233455555555555555543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-14 Score=134.70 Aligned_cols=209 Identities=10% Similarity=-0.055 Sum_probs=166.3
Q ss_pred hHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH-HHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 012360 233 LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSL-EEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQ 308 (465)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 308 (465)
++.+...++...... +.+...+..+..++...|++ ++|++.|++.. +.+...|..+...|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444443332 33455666666666677777 77777776543 23566788888888889999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhc--------CCHH
Q 012360 309 MERKGIKPNEATFVSVLAACRHS---------GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA--------GLLY 371 (465)
Q Consensus 309 m~~~g~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 371 (465)
..+. .|+...+..+..++... |++++|+..++++.+. .+.+...+..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 8877 57778888888999998 9999999999999853 244678888999999988 9999
Q ss_pred HHHHHHHhCCC-CC----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 012360 372 QAEEFIKIMPA-ED----KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNM 446 (465)
Q Consensus 372 ~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 446 (465)
+|.+.|++... .| +...|..+..+|...|++++|++.|+++++..|+++..+..++.++...|++++|.+.+.++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999988754 34 67789999999999999999999999999999999999999999999999999998765443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-11 Score=118.01 Aligned_cols=403 Identities=10% Similarity=0.009 Sum_probs=277.5
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhh---hhhhhHHHHHHHHhC-Cccchhh
Q 012360 46 FRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEK---LHYGKTVHCYATKVG-LEYMLNM 121 (465)
Q Consensus 46 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~ 121 (465)
+.|..+|..++..+.+.++++.+..+|+++... .+.....|...+..-.+.++ .+.+..+|++.+... .+|+...
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 347889999999999999999999999999886 34556678888888888888 999999999999864 1377888
Q ss_pred HHHHHHHHHhCCCh--------HHHHHHHHhh----CC-CCC-chhHHHHHHHHH---------hcCChHHHHHHHHHhh
Q 012360 122 ENALLLMYAKCKEM--------DEALRLFDEM----GS-RRN-IVSLNILINGYI---------DMELVDLAREVFDEIV 178 (465)
Q Consensus 122 ~~~l~~~~~~~g~~--------~~A~~~~~~~----~~-~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 178 (465)
|...+....+.++. +...++|+.. |. .++ ...|...+.... ..++++.+..+|++..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88887766665543 3344677664 66 664 457877776554 3456788899998885
Q ss_pred c-C--Ch-HHH---HHHHHHHH----------HcCChhHHHHHHHHHHH--cCCC---------------C-----C---
Q 012360 179 D-K--DI-VLW---RSMMHGCV----------KAKQPEEALELFKKMID--EGVT---------------P-----D--- 216 (465)
Q Consensus 179 ~-~--~~-~~~---~~l~~~~~----------~~g~~~~a~~~~~~~~~--~~~~---------------~-----~--- 216 (465)
. | +. .+| ..+..... ...+++.|...+.++.. .++. | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 4 2 11 222 22222110 01123344455544332 1111 1 0
Q ss_pred HHHHHHHHHHhccch-------hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH-HHHhcCC---CCChhh
Q 012360 217 EEVMVSVLSACSSLS-------NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEAL-VTFYKTD---CKDVVT 285 (465)
Q Consensus 217 ~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~---~~~~~~ 285 (465)
...|...+.---..+ ..+.+..+|++.+.. ++.....|...+..+...|+.++|. .+|++.. +.+...
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence 122333332211111 123456678888775 3557888888888888899998996 9998765 235566
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 012360 286 WTTMIEGLANYGLGNEALRVFYQMERKGI---------KPN------------EATFVSVLAACRHSGLITEGCQLFRRM 344 (465)
Q Consensus 286 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---------~p~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 344 (465)
|...+...-+.|+++.|..+|+++.+... .|+ ...|...++...+.|+.+.|..+|.++
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77888888899999999999999876410 132 235777777777889999999999999
Q ss_pred hcCCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC---
Q 012360 345 GGVYRVQPTIEHFVCLVDLLSRAG-LLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ--- 418 (465)
Q Consensus 345 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--- 418 (465)
.+. ........|...+..-.+.+ +.+.|.++|+.... ..+...|...+......|+.+.|..+|+++++..|+
T Consensus 461 ~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 461 RRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 863 11223444544444444544 58999999998754 335566778888888899999999999999998873
Q ss_pred CchhHHHHHHHHhhcCChHHHHHHHHHHHHhcC
Q 012360 419 SHEAYVLLSNFYALEGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 419 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 451 (465)
...+|..++..-.+.|+.+.+..+.+++.+.-.
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 455788888888899999999999999987644
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-13 Score=124.96 Aligned_cols=236 Identities=9% Similarity=0.086 Sum_probs=125.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcC-CCCC----HHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 012360 188 MMHGCVKAKQPEEALELFKKMIDEG-VTPD----EEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262 (465)
Q Consensus 188 l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (465)
....+...|++++|...+++..+.- -.++ ..++..+...+...|+++.|...+++..+........
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------- 179 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY--------- 179 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT---------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc---------
Confidence 3344556666666666666665420 0111 2344444455555555555555555544321000000
Q ss_pred HhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 012360 263 SKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK----GIKPN-EATFVSVLAACRHSGLITEG 337 (465)
Q Consensus 263 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a 337 (465)
......+++.+...|...|++++|...+++..+. +-.+. ..++..+..+|...|++++|
T Consensus 180 ----------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 243 (383)
T 3ulq_A 180 ----------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243 (383)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ----------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence 0001124455555556666666666665554432 11111 13556666667777777777
Q ss_pred HHHHHHhhcCC---CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC------CC-ccchHHHHHHHHHhcCC---hH
Q 012360 338 CQLFRRMGGVY---RV-QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA------ED-KFISYKALLSACITYSE---FD 403 (465)
Q Consensus 338 ~~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~-~~~~~~~l~~~~~~~~~---~~ 403 (465)
+..+++..+.. +. +....++..+...|.+.|++++|.+.+++... .+ ....+..+...+...|+ ++
T Consensus 244 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 323 (383)
T 3ulq_A 244 IPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQ 323 (383)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHH
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 77776665310 11 22345566667777777777777777665432 11 11224556666666776 56
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 404 LGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 404 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
+|+.++++. ...|.....+..++..|...|++++|..++++..+.
T Consensus 324 ~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 324 GFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 666666554 122344446777788888888888888888777643
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-13 Score=126.13 Aligned_cols=269 Identities=9% Similarity=-0.044 Sum_probs=156.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhh-CCCCCc-----hhHHHHHHHHHhcCChHHHHHHHHHhhc---------CChHHHH
Q 012360 122 ENALLLMYAKCKEMDEALRLFDEM-GSRRNI-----VSLNILINGYIDMELVDLAREVFDEIVD---------KDIVLWR 186 (465)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~ 186 (465)
+..+...+...|++++|...|++. ...|+. .++..+...+...|++++|...+++... ....++.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 334555566666666666666665 222321 2455566666666666666666665522 1345677
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhccchh-----------------hHhHHHHHHHHH
Q 012360 187 SMMHGCVKAKQPEEALELFKKMIDE----GVTP-DEEVMVSVLSACSSLSN-----------------LQYGRLVHRFIL 244 (465)
Q Consensus 187 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~~~ 244 (465)
.+...|...|++++|...+++..+. +-.| ...++..+...+...|+ ++.|...+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 7777788888888888888776643 1111 23355556666667777 666666665543
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----
Q 012360 245 QNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK--DVVTWTTMIEGLANYGLGNEALRVFYQMERKGI-KPN---- 317 (465)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~---- 317 (465)
+.. .....+ ....+..+...+...|++++|...+++..+... .++
T Consensus 211 ~~~----------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (411)
T 4a1s_A 211 KLM----------------------------RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAE 262 (411)
T ss_dssp HHH----------------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHH----------------------------HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHH
Confidence 321 000000 112344445555555555555555555443200 001
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHhCCCC----C----c
Q 012360 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ----PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE----D----K 385 (465)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~----~ 385 (465)
...+..+...+...|++++|...++++.....-. ....++..+...|...|++++|...+++.... + .
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 342 (411)
T 4a1s_A 263 RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGE 342 (411)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHH
Confidence 1256666677777777777777777665321100 11456667777777788888777777765321 1 2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 012360 386 FISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418 (465)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 418 (465)
..++..+...+...|++++|.+.+++++++.+.
T Consensus 343 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 343 ARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 346777888888888888888888888886643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-12 Score=119.48 Aligned_cols=296 Identities=9% Similarity=-0.044 Sum_probs=191.2
Q ss_pred hcchhhhhhhhHHHHHHHHhC--C--ccchhhHHHHHHH--HHhCCChHHHH-----------HHHHhhCCCC-CchhH-
Q 012360 94 CARLEKLHYGKTVHCYATKVG--L--EYMLNMENALLLM--YAKCKEMDEAL-----------RLFDEMGSRR-NIVSL- 154 (465)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~--~~~~g~~~~A~-----------~~~~~~~~~~-~~~~~- 154 (465)
+.+.+++++|..+++++.+.- . .++...|-.++.. ..-.+.++.+. +.++.+...| +...+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 356899999999999987642 2 2333333444332 12234444444 6666652122 11212
Q ss_pred -----HHHHHHHHhcCChHHHHHHHHHhhc-----C----ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC---
Q 012360 155 -----NILINGYIDMELVDLAREVFDEIVD-----K----DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV-TPD--- 216 (465)
Q Consensus 155 -----~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~--- 216 (465)
......+...|++++|.+.|++... + ...++..+...|...|++++|...+++..+.-. .++
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 2255667789999999999998844 2 346788899999999999999999998876311 111
Q ss_pred --HHHHHHHHHHhccchhhHhHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHH
Q 012360 217 --EEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT-QDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293 (465)
Q Consensus 217 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 293 (465)
..++..+...|...|++++|...+++..+.... ++.. ....++..+...|
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------~~~~~~~~lg~~y 234 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ---------------------------LMGRTLYNIGLCK 234 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH---------------------------HHHHHHHHHHHHH
Confidence 234455555566666666666666655442100 0000 0012455566677
Q ss_pred HHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC---CCCChhhHHHHHHHHH
Q 012360 294 ANYGLGNEALRVFYQMERK----GIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVYR---VQPTIEHFVCLVDLLS 365 (465)
Q Consensus 294 ~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~ 365 (465)
...|++++|...+++..+. +..|+ ..++..+..++...|++++|...+++..+... .+.....+..+...+.
T Consensus 235 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~ 314 (383)
T 3ulq_A 235 NSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYL 314 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 7777777777777776551 22243 45778888888899999999998888764211 1112233566778888
Q ss_pred hcCC---HHHHHHHHHhCCCCC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 366 RAGL---LYQAEEFIKIMPAED-KFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 366 ~~g~---~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
..|+ +++|..++++....+ ....+..+...|...|++++|...++++++..
T Consensus 315 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 315 SGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 8888 888888888886543 34467788899999999999999999998854
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.7e-13 Score=120.33 Aligned_cols=237 Identities=11% Similarity=-0.010 Sum_probs=133.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhc---------CChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC----HHH
Q 012360 154 LNILINGYIDMELVDLAREVFDEIVD---------KDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGV-TPD----EEV 219 (465)
Q Consensus 154 ~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~ 219 (465)
+..+...+...|++++|.+.+++... ....++..+...+...|++++|...+++..+... .++ ..+
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 125 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 34444444444555554444444311 1234566677777778888888877777654211 111 224
Q ss_pred HHHHHHHhccchh--------------------hHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 012360 220 MVSVLSACSSLSN--------------------LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD 279 (465)
Q Consensus 220 ~~~ll~~~~~~~~--------------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 279 (465)
+..+...+...|+ ++.|...+++..+.. ....
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~----------------------------~~~~ 177 (338)
T 3ro2_A 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLV----------------------------TALG 177 (338)
T ss_dssp HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHH----------------------------HHHT
T ss_pred HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH----------------------------HhcC
Confidence 5555666666677 666666665543320 0000
Q ss_pred C--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC
Q 012360 280 C--KDVVTWTTMIEGLANYGLGNEALRVFYQMERK----GIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352 (465)
Q Consensus 280 ~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 352 (465)
. .....+..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++......-.+
T Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (338)
T 3ro2_A 178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 0 01123444455555555666665555554432 1011 123566667777777777777777777653211111
Q ss_pred ----ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 012360 353 ----TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA----ED----KFISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418 (465)
Q Consensus 353 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 418 (465)
...++..+...+...|++++|...+++... .+ ...++..+...+...|++++|...++++++..+.
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 145666777778888888888887776532 11 2346777888888899999999999998887653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4.4e-13 Score=108.70 Aligned_cols=168 Identities=12% Similarity=0.039 Sum_probs=138.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012360 251 DAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA 327 (465)
Q Consensus 251 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 327 (465)
++.+|..+..+|...|++++|++.|++.. +.++.++..+...|...|++++|...+....... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 46677788888888888888888887754 3466788888889999999999999999887763 3345677777888
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHH
Q 012360 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLG 405 (465)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a 405 (465)
+...++++.+...+.++... .+.+...+..+...|.+.|++++|.+.|++... .| +..+|..++.++.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88999999999999998853 345677888999999999999999999988754 33 677899999999999999999
Q ss_pred HHHHHHHHHhCCCCch
Q 012360 406 KKVANNMMKLGNQSHE 421 (465)
Q Consensus 406 ~~~~~~~~~~~p~~~~ 421 (465)
++.|+++++.+|+++.
T Consensus 161 ~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 161 VKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHhCCccCHH
Confidence 9999999999987643
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.7e-14 Score=123.48 Aligned_cols=243 Identities=12% Similarity=0.057 Sum_probs=116.9
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHc------C-
Q 012360 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDE-------GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN------N- 247 (465)
Q Consensus 182 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~- 247 (465)
..++..+...+...|++++|...++++.+. ..+.....+..+...+...|++++|...+++..+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345666666666777777777777666542 11222344555555666666666666666665543 1
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 012360 248 ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLA 326 (465)
Q Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~ 326 (465)
.+....++..+...|...|++++|...|++... +...... +..|+ ...+..+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~------------------------~~~~~~~-~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE------------------------IREKVLG-KDHPDVAKQLNNLAL 161 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH------------------------HHHHHHC-TTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH------------------------HHHHhcC-CCChHHHHHHHHHHH
Confidence 112234555566666666666666665544221 0000000 11111 223444444
Q ss_pred HHHhcCCHHHHHHHHHHhhcCC------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----------CC-cc---
Q 012360 327 ACRHSGLITEGCQLFRRMGGVY------RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA----------ED-KF--- 386 (465)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~-~~--- 386 (465)
.+...|++++|+..++++.... ..+....++..+...|...|++++|.+.++++.. .+ ..
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 4555555555555555443210 0111223344445555555555555555544321 00 11
Q ss_pred ---chHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 387 ---ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 387 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
..+..+...+...+.+.++...+++.....|....++..++.+|.+.|++++|..++++..+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 112223333445566667777777777777777777888888888888888888888876543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.49 E-value=6.4e-12 Score=110.92 Aligned_cols=185 Identities=9% Similarity=-0.008 Sum_probs=121.9
Q ss_pred HhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-Chh-hHHHHHHHHHHcCChHHHHHHHHHH
Q 012360 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--K-DVV-TWTTMIEGLANYGLGNEALRVFYQM 309 (465)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~m 309 (465)
++|..+|++.++.-.+.+...|..++..+...|++++|..+|+++.. | +.. .|..++..+.+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 66666666666531133445666666666667777777777665442 2 233 6777777777777888888888877
Q ss_pred HHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CC
Q 012360 310 ERKGIKPNEATFVSVLAACR-HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA----ED 384 (465)
Q Consensus 310 ~~~g~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~ 384 (465)
.+.. +++...|........ ..|++++|..+|+++.+. .+.+...|..++..+.+.|++++|..+|++... .|
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 7653 223334433332222 258888888888888753 234567777788888888888888888877644 22
Q ss_pred --ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 385 --KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 385 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
....|..++..+.+.|+.+.|..+++++++..|++..
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence 3346777777777888888888888888888887554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.49 E-value=6.5e-13 Score=107.65 Aligned_cols=161 Identities=14% Similarity=0.029 Sum_probs=97.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhc
Q 012360 288 TMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA 367 (465)
Q Consensus 288 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 367 (465)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHh
Confidence 33444444444444444444443321 123344445555555555555555555555432 123444555555555566
Q ss_pred CCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 012360 368 GLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRN 445 (465)
Q Consensus 368 g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 445 (465)
|++++|.+.++++.. +.+...+..++..+...|++++|...++++++..|.++..+..++.++...|++++|...+++
T Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666665555432 224556677777777888888888888888888888888888888888888888888888887
Q ss_pred HHHhcC
Q 012360 446 MKELQT 451 (465)
Q Consensus 446 ~~~~~~ 451 (465)
..+...
T Consensus 170 ~~~~~~ 175 (186)
T 3as5_A 170 ANELDE 175 (186)
T ss_dssp HHHHHH
T ss_pred HHHcCC
Confidence 766543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.49 E-value=5.3e-12 Score=111.45 Aligned_cols=213 Identities=8% Similarity=0.021 Sum_probs=167.6
Q ss_pred HhHHHHHHHHHHcCCCCChhHHHHHHHHHH-------hcCCH-------HHHHHHHhcCCC---C-ChhhHHHHHHHHHH
Q 012360 234 QYGRLVHRFILQNNITQDAFVKTALIDMYS-------KCGSL-------EEALVTFYKTDC---K-DVVTWTTMIEGLAN 295 (465)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~---~-~~~~~~~l~~~~~~ 295 (465)
+.|..+|++.+... +.++..|..++..+. ..|++ ++|..+|++... | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666777776653 445666666666655 35775 899999987543 3 55689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHH-hcCCHHH
Q 012360 296 YGLGNEALRVFYQMERKGIKPNE-A-TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS-RAGLLYQ 372 (465)
Q Consensus 296 ~~~~~~a~~~~~~m~~~g~~p~~-~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 372 (465)
.|++++|..+|++..+. .|+. . .|..++..+.+.|++++|..+|+++.+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999985 5643 3 7888999999999999999999999963 2344555544443322 3799999
Q ss_pred HHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHh---CCC-CchhHHHHHHHHhhcCChHHHHHHHHHH
Q 012360 373 AEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKL---GNQ-SHEAYVLLSNFYALEGHWTEVAEARRNM 446 (465)
Q Consensus 373 A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 446 (465)
|.++|++... +.+...|..++..+.+.|++++|..+|+++++. .|+ ....|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999998754 336778999999999999999999999999996 343 5668999999999999999999999988
Q ss_pred HHhcC
Q 012360 447 KELQT 451 (465)
Q Consensus 447 ~~~~~ 451 (465)
.+...
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 76544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-12 Score=127.82 Aligned_cols=163 Identities=12% Similarity=0.104 Sum_probs=142.1
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHH
Q 012360 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCL 360 (465)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 360 (465)
+..+++.|...|.+.|++++|+..|++..+. .|+ ...+..+..++.+.|++++|+..|+++.+. .+-+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 3557888888899999999999999998876 554 678888999999999999999999999853 23357888999
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHH
Q 012360 361 VDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTE 438 (465)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 438 (465)
..+|.+.|++++|++.|++... +| +...|..++.++...|++++|++.|+++++++|+++..+..++.++...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999988654 34 677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 012360 439 VAEARRNMKE 448 (465)
Q Consensus 439 a~~~~~~~~~ 448 (465)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.1e-11 Score=109.99 Aligned_cols=157 Identities=11% Similarity=0.030 Sum_probs=76.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhccchhhHhHHHHHHHHHHcCC-----C-CChhHHH
Q 012360 188 MMHGCVKAKQPEEALELFKKMIDEGV-TPD----EEVMVSVLSACSSLSNLQYGRLVHRFILQNNI-----T-QDAFVKT 256 (465)
Q Consensus 188 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~ 256 (465)
....+...|++++|+..|++..+... .++ ..++..+...+...|+++.|...+++..+... . ....++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44456677888888888877765311 122 23455556666677777777776666554211 0 0123444
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 012360 257 ALIDMYSKCGSLEEALVTFYKTDC-----KD----VVTWTTMIEGLANYGLGNEALRVFYQMER-----KGIKPNEATFV 322 (465)
Q Consensus 257 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~ 322 (465)
.+..+|...|++++|.+.|++..+ ++ ..++..+...|...|++++|...+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 555555555555555555543221 01 12333444444444444444444444433 21 11123344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhh
Q 012360 323 SVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 323 ~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
.+..++.+.|++++|...+++..
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al 288 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGL 288 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444444444444444444443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.46 E-value=6e-11 Score=107.87 Aligned_cols=159 Identities=11% Similarity=0.080 Sum_probs=67.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHH-----
Q 012360 288 TMIEGLANYGLGNEALRVFYQMERKGIK--P--NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFV----- 358 (465)
Q Consensus 288 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----- 358 (465)
.+...+...|++++|...+++..+.... + ...++..+...+...|++++|...+++.............+.
T Consensus 140 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 219 (373)
T 1hz4_A 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 219 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 3444445555555555555544432111 0 112344444555555555555555555432100000000111
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC-C-c----cchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC------CchhHHHH
Q 012360 359 CLVDLLSRAGLLYQAEEFIKIMPAE-D-K----FISYKALLSACITYSEFDLGKKVANNMMKLGNQ------SHEAYVLL 426 (465)
Q Consensus 359 ~l~~~~~~~g~~~~A~~~~~~~~~~-~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l 426 (465)
..+..+...|++++|...+++.... + + ...+..+...+...|++++|...++++.+..+. ....+..+
T Consensus 220 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~l 299 (373)
T 1hz4_A 220 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 299 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 1222244555555555555554321 1 0 012334444555555555555555555443211 11134444
Q ss_pred HHHHhhcCChHHHHHHHHHH
Q 012360 427 SNFYALEGHWTEVAEARRNM 446 (465)
Q Consensus 427 ~~~~~~~g~~~~a~~~~~~~ 446 (465)
+.++...|++++|...+++.
T Consensus 300 a~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 300 NQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 55555555555555555544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.3e-12 Score=106.77 Aligned_cols=189 Identities=16% Similarity=0.015 Sum_probs=110.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---C-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 012360 251 DAFVKTALIDMYSKCGSLEEALVTFYKTD---C-KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVL 325 (465)
Q Consensus 251 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~ 325 (465)
++..+......+...|++++|...|++.. + ++...+..+..++...|++++|...+++..+. .|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 44566666666677777777777666543 2 45555555666666677777777777766655 343 34566666
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCc---cchHHHHHH
Q 012360 326 AACRHSGLITEGCQLFRRMGGVYRVQPTI-------EHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDK---FISYKALLS 394 (465)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---~~~~~~l~~ 394 (465)
.++...|++++|+..+++..+. .+.+. ..|..+...+...|++++|.+.|++... .|+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 6666677777777777766642 12223 3455566666666666666666665543 232 344555555
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 395 ACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
++... +..+++++..+.+.++..|... .....+.+++|...+++..+..
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 55433 2344555555555444333222 2334455699999999887654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-11 Score=110.77 Aligned_cols=191 Identities=12% Similarity=-0.008 Sum_probs=106.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhc-----C-----ChHHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCC-CH
Q 012360 153 SLNILINGYIDMELVDLAREVFDEIVD-----K-----DIVLWRSMMHGCVKAKQPEEALELFKKMIDE----GVTP-DE 217 (465)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~ 217 (465)
++..+...+...|+++.|...+++... + ...+++.+...|...|++++|...+++..+. +..+ ..
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 344445555555555555555544311 0 1234556666666666666666666665542 1111 12
Q ss_pred HHHHHHHHHhccchhhHhHHHHHHHHHHc----CCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------CC-hhh
Q 012360 218 EVMVSVLSACSSLSNLQYGRLVHRFILQN----NITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC-------KD-VVT 285 (465)
Q Consensus 218 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~-~~~ 285 (465)
.++..+...+...|++++|...+++..+. +.+....++..+..++.+.|++++|...+++... +. ...
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34555566666667777777666666551 2222355666677777777777777777655321 11 123
Q ss_pred HHHHHHHHHHcCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 012360 286 WTTMIEGLANYGL---GNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGG 346 (465)
Q Consensus 286 ~~~l~~~~~~~~~---~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 346 (465)
+..+...+...++ ..+|...+++ .+..|+ ...+..+...|...|++++|...|+++.+
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444555555666 5556655554 322333 24556677788888888888888887753
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-12 Score=113.70 Aligned_cols=206 Identities=10% Similarity=0.007 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHhccchhhHhHHHHHHHHHHcC------C
Q 012360 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDE------GVTP-DEEVMVSVLSACSSLSNLQYGRLVHRFILQNN------I 248 (465)
Q Consensus 182 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~ 248 (465)
..++..+...|...|++++|...+++..+. +..| ...++..+...+...|++++|...++++.+.. .
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 356777778888888888888888877653 2222 34566777788888899999988888876541 1
Q ss_pred -CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHH
Q 012360 249 -TQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK------GIKPN-EAT 320 (465)
Q Consensus 249 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~ 320 (465)
+....++..+. ..+...|++++|..+++++.+. +..|. ..+
T Consensus 149 ~~~~~~~~~~la-------------------------------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 197 (311)
T 3nf1_A 149 HPDVAKQLNNLA-------------------------------LLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKT 197 (311)
T ss_dssp CHHHHHHHHHHH-------------------------------HHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHH
T ss_pred ChHHHHHHHHHH-------------------------------HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 11122334444 4444555555555555554432 11222 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCC------CCCCC-hh------hHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-c
Q 012360 321 FVSVLAACRHSGLITEGCQLFRRMGGVY------RVQPT-IE------HFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-K 385 (465)
Q Consensus 321 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~-~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~ 385 (465)
+..+..++...|++++|...++++.+.. ...+. .. .+..+...+...+.+.+|...+..... .| .
T Consensus 198 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 277 (311)
T 3nf1_A 198 KNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTV 277 (311)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchH
Confidence 6666677777777777777777766310 01111 11 122223333444555566666666553 22 5
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 012360 386 FISYKALLSACITYSEFDLGKKVANNMMKLGNQ 418 (465)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 418 (465)
..++..++..|...|++++|.+.+++++++.|.
T Consensus 278 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 278 TTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 567889999999999999999999999988764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-11 Score=115.31 Aligned_cols=189 Identities=13% Similarity=-0.078 Sum_probs=96.2
Q ss_pred chhhHHHHHHHHHhCCCh-HHHHHHHHhh-CCCC-CchhHHHHHHHHHhcCChHHHHHHHHHhh--cCChHHHHHHHHHH
Q 012360 118 MLNMENALLLMYAKCKEM-DEALRLFDEM-GSRR-NIVSLNILINGYIDMELVDLAREVFDEIV--DKDIVLWRSMMHGC 192 (465)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~ 192 (465)
+...+..+..++...|++ ++|++.|++. ...| +..+|..+...|...|++++|.+.|++.. .|+...+..+...+
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~ 180 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVL 180 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444555555555 5555555444 2222 23445555555555555555555555442 23444455555555
Q ss_pred HHc---------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc--------hhhHhHHHHHHHHHHcCCC--CChh
Q 012360 193 VKA---------KQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSL--------SNLQYGRLVHRFILQNNIT--QDAF 253 (465)
Q Consensus 193 ~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~--~~~~ 253 (465)
... |++++|+..|++..+.. +.+...+..+..++... |++++|...|++..+.... .+..
T Consensus 181 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 259 (474)
T 4abn_A 181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPD 259 (474)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHH
T ss_pred HHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHH
Confidence 555 55555555555555532 12344455555555554 5566666666655554210 3455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHH
Q 012360 254 VKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFY 307 (465)
Q Consensus 254 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 307 (465)
.+..+..+|...|++++|.+.|++.. +.+...+..+...+...|++++|...+.
T Consensus 260 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 260 LHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55566666666666666666665543 2234455555556666666666655443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-11 Score=103.22 Aligned_cols=204 Identities=10% Similarity=0.019 Sum_probs=159.6
Q ss_pred CCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHH
Q 012360 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIE 291 (465)
Q Consensus 215 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~ 291 (465)
.|...+......+...|++++|...|+...+...+++...+..+..++...|++++|+..|++.. +.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 35677888888899999999999999999998744777788889999999999999999998865 235668899999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC---hhhHHHH
Q 012360 292 GLANYGLGNEALRVFYQMERKGIKPN-E-------ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT---IEHFVCL 360 (465)
Q Consensus 292 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 360 (465)
.+...|++++|...+++..+. .|+ . ..|..+...+...|++++|+..|+++.+. .|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHH
Confidence 999999999999999999886 443 4 45777888899999999999999999953 454 5677788
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 012360 361 VDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY 430 (465)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 430 (465)
..+|...|+. .++++.. ..+...+.... ....+.+++|+..+++++++.|+++.+...+....
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 8888766543 2232221 12233343333 33567799999999999999999998777666554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-11 Score=98.95 Aligned_cols=167 Identities=10% Similarity=-0.049 Sum_probs=142.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012360 252 AFVKTALIDMYSKCGSLEEALVTFYKTDC---KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAAC 328 (465)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 328 (465)
...+..+...+...|++++|...++++.. .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34567788889999999999999998764 356788889999999999999999999988763 33567888899999
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHH
Q 012360 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGK 406 (465)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 406 (465)
...|++++|...++++... .+.+...+..+...+...|++++|.+.++++.. +.+...+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999863 345678888999999999999999999988654 335678899999999999999999
Q ss_pred HHHHHHHHhCCCCch
Q 012360 407 KVANNMMKLGNQSHE 421 (465)
Q Consensus 407 ~~~~~~~~~~p~~~~ 421 (465)
..++++++..|++..
T Consensus 165 ~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 165 PHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHCCCG
T ss_pred HHHHHHHHcCCCchh
Confidence 999999999887765
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-10 Score=99.00 Aligned_cols=238 Identities=10% Similarity=0.023 Sum_probs=161.2
Q ss_pred HhcCChHHHHHHHHHhhcCC-hHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHH
Q 012360 162 IDMELVDLAREVFDEIVDKD-IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240 (465)
Q Consensus 162 ~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 240 (465)
.-.|++..++.-..++...+ ...-.-+.++|...|+++.. ..-.|....+..+...+ ..+ +...+
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~l 89 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEEL 89 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHHH
T ss_pred HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHHH
Confidence 34455555555333332222 22233345677777776642 11234433444333333 222 66777
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 012360 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCK-----DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIK 315 (465)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 315 (465)
++..+.+ .++...+..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+. .
T Consensus 90 ~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~ 166 (310)
T 3mv2_B 90 ENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--I 166 (310)
T ss_dssp HHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 7776655 455556668888899999999999999876432 4457778889999999999999999999876 6
Q ss_pred C-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----
Q 012360 316 P-----NEATFVSVLAA--CRHSG--LITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA---- 382 (465)
Q Consensus 316 p-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 382 (465)
| +..+...++.+ ....| ++.+|..+|+++.+. .|+..+-..+..++.+.|++++|.+.++.+..
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 6 35666667666 33334 899999999999854 35533334455589999999999999986543
Q ss_pred --------CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 383 --------EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 383 --------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
+.++.++..++......|+ +|.++++++.+..|+++.
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 2366777667666667776 889999999999999986
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-09 Score=97.41 Aligned_cols=267 Identities=9% Similarity=-0.047 Sum_probs=137.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchh----hHHHHHHHhcchhhhhhhhHHHHHHHHhCCcc-----chhhHHH
Q 012360 54 TLMSIYNDFSDSGEVLILFKQLIFEGIVADKI----TLVILFSACARLEKLHYGKTVHCYATKVGLEY-----MLNMENA 124 (465)
Q Consensus 54 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ 124 (465)
.....+...|++++|...+++........+.. ++..+...+...|+++.|...+++........ ...++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445667788888888888876643111211 34444555666777777777777666532110 1122345
Q ss_pred HHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhc---C-ChHHHHHHHHHHHHcCChhH
Q 012360 125 LLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVD---K-DIVLWRSMMHGCVKAKQPEE 200 (465)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~ 200 (465)
+...+...|++++|...+++. .++...... + ....+..+...+...|++++
T Consensus 99 la~~~~~~G~~~~A~~~~~~a-------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 153 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKA-------------------------FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 153 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-------------------------HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH-------------------------HHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHH
Confidence 556666667777776666554 111111111 1 12344555666667777777
Q ss_pred HHHHHHHHHHcCCC--C--CHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCC--hhHHH----HHHHHHHhcCCHHH
Q 012360 201 ALELFKKMIDEGVT--P--DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD--AFVKT----ALIDMYSKCGSLEE 270 (465)
Q Consensus 201 a~~~~~~~~~~~~~--~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~ 270 (465)
|...+++....... + ...++..+...+...|++++|...+++.......++ ..... ..+..+...|++++
T Consensus 154 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 233 (373)
T 1hz4_A 154 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA 233 (373)
T ss_dssp HHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHH
Confidence 77777766543211 1 123445555566666777777777666654311111 11111 22333556677777
Q ss_pred HHHHHhcCCCCCh-------hhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 012360 271 ALVTFYKTDCKDV-------VTWTTMIEGLANYGLGNEALRVFYQMERK----GIKPNE-ATFVSVLAACRHSGLITEGC 338 (465)
Q Consensus 271 a~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~~~~~~~a~ 338 (465)
|...+++...++. ..+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|.
T Consensus 234 A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 313 (373)
T 1hz4_A 234 AANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ 313 (373)
T ss_dssp HHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHH
Confidence 7777766553221 12344455555666666666666554322 111111 13333444455555555555
Q ss_pred HHHHHhh
Q 012360 339 QLFRRMG 345 (465)
Q Consensus 339 ~~~~~~~ 345 (465)
..+++..
T Consensus 314 ~~l~~al 320 (373)
T 1hz4_A 314 RVLLDAL 320 (373)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-11 Score=107.57 Aligned_cols=186 Identities=10% Similarity=0.010 Sum_probs=111.8
Q ss_pred HHHhcCCHHHHHHHHhcCCC-------C--ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHH
Q 012360 261 MYSKCGSLEEALVTFYKTDC-------K--DVVTWTTMIEGLANYGLGNEALRVFYQMERK----GIKPN-EATFVSVLA 326 (465)
Q Consensus 261 ~~~~~~~~~~a~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~ 326 (465)
.|...|++++|...|++... + ...+|+.+...|...|++++|+..+++..+. |-.+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555666666655544321 1 1345666677777777777777777665542 11111 246677777
Q ss_pred HHHhc-CCHHHHHHHHHHhhcCCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC---ccc-----hHHHH
Q 012360 327 ACRHS-GLITEGCQLFRRMGGVYRVQPT----IEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED---KFI-----SYKAL 392 (465)
Q Consensus 327 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~---~~~-----~~~~l 392 (465)
.|... |++++|+..|++..+...-..+ ..++..+...+.+.|++++|...|++... .| ... .|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 78775 8888888888887642110011 34577778888888888888888876533 22 111 45667
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchh-----HHHHHHHHh--hcCChHHHHHHHHHH
Q 012360 393 LSACITYSEFDLGKKVANNMMKLGNQSHEA-----YVLLSNFYA--LEGHWTEVAEARRNM 446 (465)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~~ 446 (465)
+.++...|++++|+..+++++++.|..... +..++.++. ..+++++|...++++
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 777888888888888888888877765442 344555554 345677777766544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-11 Score=106.64 Aligned_cols=164 Identities=12% Similarity=0.029 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC------CCC
Q 012360 285 TWTTMIEGLANYGLGNEALRVFYQMERK------GIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVY------RVQ 351 (465)
Q Consensus 285 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~ 351 (465)
++..+...+...|++++|...+.+..+. ...| ...++..+...+...|++++|...++++.+.. ..+
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444555555555555555555554432 1112 23455666666666677777766666665320 011
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----------CC-ccchHHHHHHHHHhcCChH------HHHHHHHHHHH
Q 012360 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA----------ED-KFISYKALLSACITYSEFD------LGKKVANNMMK 414 (465)
Q Consensus 352 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~-~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~ 414 (465)
....++..+...|...|++++|...+++... .+ ....|..+.......+... .+...++....
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 1244556666667777777777766665432 11 2223333333333322222 22222222212
Q ss_pred hCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 415 LGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 415 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
..|....++..++.+|...|++++|..++++..+
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2244455677888888888888888888876654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.9e-10 Score=98.87 Aligned_cols=182 Identities=7% Similarity=-0.080 Sum_probs=102.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 012360 251 DAFVKTALIDMYSKCGSLEEALVTFYKTDC--K-D---VVTWTTMIEGLANYGLGNEALRVFYQMERKGI-KPN-EATFV 322 (465)
Q Consensus 251 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~ 322 (465)
+...+..+...+.+.|++++|...|+++.. | + ...+..+..++...|++++|...|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 455566666777777777777777776542 2 2 34566666777777777777777777766521 112 34555
Q ss_pred HHHHHHHh--------cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHH
Q 012360 323 SVLAACRH--------SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLS 394 (465)
Q Consensus 323 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 394 (465)
.+..++.. .|++++|+..|+++.+.+ +.+......+.......+.. ...+..++.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 66666666 777777777777776431 11222221111000000000 001244555
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHhhc----------CChHHHHHHHHHHHHh
Q 012360 395 ACITYSEFDLGKKVANNMMKLGNQSH---EAYVLLSNFYALE----------GHWTEVAEARRNMKEL 449 (465)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~ 449 (465)
.+...|++++|+..|+++++..|+++ ..+..++.+|... |++++|...++++.+.
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 66666666666666666666666533 3566666666654 6666666666665543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=5.7e-11 Score=115.86 Aligned_cols=163 Identities=13% Similarity=0.086 Sum_probs=132.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 012360 251 DAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLA 326 (465)
Q Consensus 251 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~ 326 (465)
+..+++.+..+|.+.|++++|++.|++.. ..+..+|..+..+|.+.|++++|+..|++..+. .|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 45677778888888888888888887754 235678888888899999999999999988876 454 678888999
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHH
Q 012360 327 ACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDL 404 (465)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~ 404 (465)
++...|++++|++.|+++.+. .+-+...+..+..+|...|++++|++.|++... .| +...+..++.++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999998853 234577888999999999999999999988654 44 66788899999999999999
Q ss_pred HHHHHHHHHHhCC
Q 012360 405 GKKVANNMMKLGN 417 (465)
Q Consensus 405 a~~~~~~~~~~~p 417 (465)
|.+.+++++++.|
T Consensus 164 A~~~~~kal~l~~ 176 (723)
T 4gyw_A 164 YDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCh
Confidence 9999999887543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.25 E-value=6.5e-10 Score=93.04 Aligned_cols=182 Identities=9% Similarity=-0.071 Sum_probs=114.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHH
Q 012360 252 AFVKTALIDMYSKCGSLEEALVTFYKTDC--KD----VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE----ATF 321 (465)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~ 321 (465)
...+..+...+...|++++|...|+++.. |+ ...+..+..++.+.|++++|+..|+++.+. .|+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34455566667777777777777776542 22 135666667777777777777777777665 3332 134
Q ss_pred HHHHHHHHh------------------cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 012360 322 VSVLAACRH------------------SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383 (465)
Q Consensus 322 ~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (465)
..+..++.. .|++++|+..|+++.+. .+-+..........-. .....
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~----~~~~~--------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVF----LKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHH----HHHHH---------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHH----HHHHH---------
Confidence 444444443 34566666666666642 1112222211111000 00000
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHhhcCChHHHHHHHHHHHHhcCC
Q 012360 384 DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH---EAYVLLSNFYALEGHWTEVAEARRNMKELQTR 452 (465)
Q Consensus 384 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 452 (465)
......++..+.+.|++++|+..|+++++..|+++ .++..++.++.+.|++++|...++.+...+..
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00113466778899999999999999999999886 46899999999999999999999988766543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.25 E-value=6.9e-10 Score=95.08 Aligned_cols=239 Identities=7% Similarity=0.009 Sum_probs=166.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 012360 190 HGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLE 269 (465)
Q Consensus 190 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (465)
+-..-.|++..++.-..++. ...+......+.+++...|++... ..-.|....+..+... ...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT---
T ss_pred HHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc---
Confidence 44456788888887433221 122233334455777777766542 1223333344444433 3333
Q ss_pred HHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 270 EALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 270 ~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
|+..|++.. .++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777654 2455566688889999999999999999987765323 45678888899999999999999999998
Q ss_pred cCCCCCC-----ChhhHHHHHHH--HHhcC--CHHHHHHHHHhCCCCC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 012360 346 GVYRVQP-----TIEHFVCLVDL--LSRAG--LLYQAEEFIKIMPAED-KFISYKALLSACITYSEFDLGKKVANNMMKL 415 (465)
Q Consensus 346 ~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 415 (465)
+ ..| +..+...|+.+ ....| ++.+|..+|+++...+ +..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 164 ~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 N---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred h---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 356 35556666666 33334 8999999999986543 3233444555888999999999999988776
Q ss_pred ----------CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 416 ----------GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 416 ----------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
+|+++.++..++......|+ +|.++++++.+..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 48899988888888888887 8899999887653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-10 Score=87.68 Aligned_cols=128 Identities=18% Similarity=0.196 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHh
Q 012360 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACIT 398 (465)
Q Consensus 321 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~ 398 (465)
+..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|...++++.. +.+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 344455555556666666666655532 123444555555566666666666666655432 2244556667777778
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 399 YSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 399 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
.|++++|.+.++++.+..|.++..+..++.++...|++++|...++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888888877778888888888888888888888776543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.9e-11 Score=95.08 Aligned_cols=142 Identities=10% Similarity=-0.127 Sum_probs=103.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcC
Q 012360 290 IEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG 368 (465)
Q Consensus 290 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 368 (465)
...+...|++++|+..++..... .|+ ...+..+...|.+.|++++|++.|+++.+. .+.+...|..+..+|.+.|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 34445566777787777776544 443 345666778888888888888888888752 2346777888888888888
Q ss_pred CHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHH-HHHHHHhCCCCchhHHHHHHHHhhcCC
Q 012360 369 LLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKV-ANNMMKLGNQSHEAYVLLSNFYALEGH 435 (465)
Q Consensus 369 ~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 435 (465)
++++|...|++... .| ++..|..+...+.+.|++++|.+. +++++++.|+++.+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888877644 34 567788888888888888776654 588888889888888888888877775
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.9e-10 Score=97.71 Aligned_cols=202 Identities=10% Similarity=-0.028 Sum_probs=141.0
Q ss_pred CCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C---hhh
Q 012360 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD---AFVKTALIDMYSKCGSLEEALVTFYKTDC--K-D---VVT 285 (465)
Q Consensus 215 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~---~~~ 285 (465)
.+...+......+.+.|++++|...|+.+.+.. +.+ ...+..+..+|...|++++|...|++... | + ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 355667777778899999999999999998864 223 66788899999999999999999988653 3 2 346
Q ss_pred HHHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhh
Q 012360 286 WTTMIEGLAN--------YGLGNEALRVFYQMERKGIKPNE-ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEH 356 (465)
Q Consensus 286 ~~~l~~~~~~--------~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 356 (465)
+..+..++.. .|++++|...|+++.+. .|+. .....+. .+..+... ....
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~--------------~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQ--------------KIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHH--------------HHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHH--------------HHHHHHHH-----HHHH
Confidence 7777888888 99999999999999887 4543 2221111 11111100 0112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CCc----cchHHHHHHHHHhc----------CChHHHHHHHHHHHHhCCCCch
Q 012360 357 FVCLVDLLSRAGLLYQAEEFIKIMPA-EDK----FISYKALLSACITY----------SEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
+..+...|.+.|++++|...|+.+.. .|+ ...+..++.++... |++++|+..++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 45667777788888888888777643 232 33566677777655 8899999999999999999875
Q ss_pred ---hHHHHHHHHhhcCChHH
Q 012360 422 ---AYVLLSNFYALEGHWTE 438 (465)
Q Consensus 422 ---~~~~l~~~~~~~g~~~~ 438 (465)
....+...+.+.+++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444433
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-10 Score=100.93 Aligned_cols=221 Identities=14% Similarity=-0.004 Sum_probs=121.9
Q ss_pred ChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHhccchhhHhHHHHH
Q 012360 166 LVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDE----GVTPD-EEVMVSVLSACSSLSNLQYGRLVH 240 (465)
Q Consensus 166 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~ 240 (465)
++++|.+.|++. ...|...|++++|...|.+..+. |-+++ ..+|..+..+|...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356665555443 55666677777777777665542 11111 234555555555566666666555
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCC---CC
Q 012360 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY-GLGNEALRVFYQMERKGI---KP 316 (465)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~g~---~p 316 (465)
++..+.. ...|+...+ ..+++.+...|... |++++|+..|++..+... .+
T Consensus 101 ~~Al~l~---------------~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQIF---------------THRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHHH---------------HHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHH---------------HHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 5554321 111111111 22455566666664 777777777776654310 00
Q ss_pred -C-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCcc--
Q 012360 317 -N-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI-----EHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDKF-- 386 (465)
Q Consensus 317 -~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-- 386 (465)
. ..++..+...+...|++++|+..|+++.+...-.+.. ..+..+..++...|++++|...+++... .|+.
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 0 2456677777778888888888888777531111111 1456667777778888888888877654 3321
Q ss_pred ----chHHHHHHHHH--hcCChHHHHHHHHHHHHhCCCCchhH
Q 012360 387 ----ISYKALLSACI--TYSEFDLGKKVANNMMKLGNQSHEAY 423 (465)
Q Consensus 387 ----~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~ 423 (465)
..+..++.++. ..+++++|+..|+++..++|.....+
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 12334455553 34567777777777766666554433
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.21 E-value=3.7e-10 Score=98.04 Aligned_cols=207 Identities=8% Similarity=0.003 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHhccchhhHhHHHHHHHHHHcCC---CCC
Q 012360 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDE------GVTP-DEEVMVSVLSACSSLSNLQYGRLVHRFILQNNI---TQD 251 (465)
Q Consensus 182 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~ 251 (465)
..++..+...|...|++++|...+++..+. +-.| ...++..+...+...|++++|...+++..+... .++
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 345666666667777777777777666543 1111 233445555555666666666666655544210 000
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHH
Q 012360 252 AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERK------GIKPN-EATFVSV 324 (465)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~l 324 (465)
.......+..+...+...|++++|...+++..+. +-.|+ ..++..+
T Consensus 123 ---------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 175 (283)
T 3edt_B 123 ---------------------------HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNL 175 (283)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred ---------------------------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 0001234555556666666666666666665543 11232 3567777
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCC------CCCC-ChhhHHHHHHHHHhcCC------HHHHHHHHHhCCCC-C-ccchH
Q 012360 325 LAACRHSGLITEGCQLFRRMGGVY------RVQP-TIEHFVCLVDLLSRAGL------LYQAEEFIKIMPAE-D-KFISY 389 (465)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~-~-~~~~~ 389 (465)
..++...|++++|...++++.+.. ...+ ....+..+...+...+. +..+...++..... | ...++
T Consensus 176 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (283)
T 3edt_B 176 ASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTL 255 (283)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 788888888888888888776420 1122 23333344433333332 33344444444332 2 44568
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHh
Q 012360 390 KALLSACITYSEFDLGKKVANNMMKL 415 (465)
Q Consensus 390 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 415 (465)
..+...|...|++++|..+++++++.
T Consensus 256 ~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 256 RSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88999999999999999999998764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.18 E-value=7.8e-11 Score=115.44 Aligned_cols=168 Identities=10% Similarity=-0.023 Sum_probs=126.4
Q ss_pred HhcCCHHHHHHHHhcCC-----------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 012360 263 SKCGSLEEALVTFYKTD-----------CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRH 330 (465)
Q Consensus 263 ~~~~~~~~a~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~ 330 (465)
...|++++|++.+++.. ..+...+..+...+...|++++|...|++..+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 56788888888887654 335567777888888888888888888888776 34 45677778888888
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHH
Q 012360 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKV 408 (465)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~ 408 (465)
.|++++|+..|+++.+. .+.+...+..+..++.+.|++++ .+.|+++.. .| +...|..+..++...|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888888742 23356777788888888888888 888877643 33 566788888888888888888888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHhhcCC
Q 012360 409 ANNMMKLGNQSHEAYVLLSNFYALEGH 435 (465)
Q Consensus 409 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 435 (465)
|+++++++|.+...+..++.++...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 888888888888888888888877655
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=7.6e-10 Score=96.34 Aligned_cols=170 Identities=6% Similarity=-0.112 Sum_probs=135.5
Q ss_pred HHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC
Q 012360 274 TFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP 352 (465)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 352 (465)
.+....+.+...+..+...+...|++++|...|++..+. .| +...+..+...+...|++++|...++++... .|
T Consensus 108 ~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p 182 (287)
T 3qou_A 108 LLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQ 182 (287)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GC
T ss_pred HHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hc
Confidence 333333344556667778888999999999999998887 45 4678888899999999999999999998753 45
Q ss_pred ChhhHH-HHHHHHHhcCCHHHHHHHHHhCCC-C-CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC--chhHHHHH
Q 012360 353 TIEHFV-CLVDLLSRAGLLYQAEEFIKIMPA-E-DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS--HEAYVLLS 427 (465)
Q Consensus 353 ~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~ 427 (465)
+..... .....+...++.++|...+++... . .+...+..+...+...|++++|+..|+++++.+|++ ...+..++
T Consensus 183 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~ 262 (287)
T 3qou_A 183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQ 262 (287)
T ss_dssp SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHH
T ss_pred chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHH
Confidence 544333 333346677888888888887643 3 467889999999999999999999999999999988 77899999
Q ss_pred HHHhhcCChHHHHHHHHHHHH
Q 012360 428 NFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 428 ~~~~~~g~~~~a~~~~~~~~~ 448 (465)
.++...|+.++|...+++...
T Consensus 263 ~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 263 EILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999998886543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.17 E-value=9.2e-10 Score=83.55 Aligned_cols=132 Identities=13% Similarity=0.142 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHH
Q 012360 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364 (465)
Q Consensus 285 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (465)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46677788888899999999998887763 335677778888888899999999999998753 244567788888899
Q ss_pred HhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 012360 365 SRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419 (465)
Q Consensus 365 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 419 (465)
...|++++|.+.++++.. +.+...+..++..+...|++++|...++++++..|.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999887643 2356678888999999999999999999999988763
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-09 Score=89.19 Aligned_cols=160 Identities=8% Similarity=-0.083 Sum_probs=99.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHhhcCCCCCCChhhH
Q 012360 282 DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSG----LITEGCQLFRRMGGVYRVQPTIEHF 357 (465)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 357 (465)
++..+..+...|...+++++|..+|++..+.| +...+..+...|.. + ++++|+.+|++..+. -+...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 44455555555555666666666666666554 34455555555555 4 666777777666542 244555
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHhCCCCCc----cchHHHHHHHHHh----cCChHHHHHHHHHHHHhCCCCchhHHH
Q 012360 358 VCLVDLLSR----AGLLYQAEEFIKIMPAEDK----FISYKALLSACIT----YSEFDLGKKVANNMMKLGNQSHEAYVL 425 (465)
Q Consensus 358 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~ 425 (465)
..|...|.. .+++++|.++|++.....+ +..+..|...|.. .+++++|+..|+++.+. |.++..+..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 566666655 6667777777766655443 5666667666666 66777777777777776 444555777
Q ss_pred HHHHHhhc-C-----ChHHHHHHHHHHHHhc
Q 012360 426 LSNFYALE-G-----HWTEVAEARRNMKELQ 450 (465)
Q Consensus 426 l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 450 (465)
|+.+|... | ++++|..++++..+.|
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77777643 2 6777777777766554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=8.8e-11 Score=91.26 Aligned_cols=124 Identities=8% Similarity=-0.051 Sum_probs=103.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCC
Q 012360 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSE 401 (465)
Q Consensus 324 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~ 401 (465)
|...+...|++++|+..++..... .+.+...+..+...|.+.|++++|.+.|++... .| ++.+|..++.++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 445566778999999999999852 233456677899999999999999999998754 34 77889999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHH-HHHHHHh
Q 012360 402 FDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEA-RRNMKEL 449 (465)
Q Consensus 402 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~ 449 (465)
+++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999886654 5777654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.12 E-value=4.3e-07 Score=84.99 Aligned_cols=364 Identities=7% Similarity=-0.025 Sum_probs=197.7
Q ss_pred chhhhHHHHHHHccCChHHHHHHhccCC--CCCcccHHHHHHHHHhcCC-hhHHHHHHHHHHHc-CCCC-chhhHHHHHH
Q 012360 18 IYVGNSLIHFYGRMALFTDARVLFDKMP--FRDVGSWNTLMSIYNDFSD-SGEVLILFKQLIFE-GIVA-DKITLVILFS 92 (465)
Q Consensus 18 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~-~~~~-~~~~~~~l~~ 92 (465)
-.+|...+..+-. |+++.+..+|+... .|++..|...+....+.++ .+....+|+..... |..| +...|...+.
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~ 93 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE 93 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 3455555555544 77888888888765 4677788877777666653 45567777776653 3223 4556666666
Q ss_pred Hhc----chhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChH
Q 012360 93 ACA----RLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVD 168 (465)
Q Consensus 93 ~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 168 (465)
.+. ..++.+.+..+|+..+......-...|......-. ......+..++.+. .+.+.
T Consensus 94 f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~-~~~~~~~~~~~~~~------------------~~~y~ 154 (493)
T 2uy1_A 94 EEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFEL-ELNKITGKKIVGDT------------------LPIFQ 154 (493)
T ss_dssp HTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH-HHCHHHHHHHHHHH------------------HHHHH
T ss_pred HHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHH-HhccccHHHHHHHH------------------hHHHH
Confidence 554 34677888888888876321111122222211111 11111122221111 01222
Q ss_pred HHHHHHHHhhc----CChHHHHHHHHHHHHcC--C-----hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHH
Q 012360 169 LAREVFDEIVD----KDIVLWRSMMHGCVKAK--Q-----PEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGR 237 (465)
Q Consensus 169 ~a~~~~~~~~~----~~~~~~~~l~~~~~~~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 237 (465)
.|..+++.... .+...|...+.--...+ - .+.+..+|++++... +.+...|...+.-+...|+.+.|.
T Consensus 155 ~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar 233 (493)
T 2uy1_A 155 SSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAK 233 (493)
T ss_dssp HHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 22322222211 12334433333221110 0 233555666666542 334455555555556666777777
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH-HHHHhcCC----------C--CChhhHHHHHHHHHHcCChHHHHH
Q 012360 238 LVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA-LVTFYKTD----------C--KDVVTWTTMIEGLANYGLGNEALR 304 (465)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~----------~--~~~~~~~~l~~~~~~~~~~~~a~~ 304 (465)
.++++.... +.+...+.. |......++. ..+.+... . .....|...+....+.++.+.|..
T Consensus 234 ~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~ 307 (493)
T 2uy1_A 234 KVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRK 307 (493)
T ss_dssp HHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHH
Confidence 777776665 323222221 1111111111 11111100 0 112356666677777788999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 012360 305 VFYQMERKGIKPNEATFVSVLAACRH-SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE 383 (465)
Q Consensus 305 ~~~~m~~~g~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (465)
+|++. +.. ..+...|...+..-.. .++.+.|..+|+...+.+ +.++..+...++...+.|+.+.|..+|+.+.
T Consensus 308 i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-- 381 (493)
T 2uy1_A 308 LFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE-- 381 (493)
T ss_dssp HHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--
T ss_pred HHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--
Confidence 99988 321 2234444332222222 336999999999998643 3344556667777788999999999999984
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012360 384 DKFISYKALLSACITYSEFDLGKKVANNMMK 414 (465)
Q Consensus 384 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (465)
.....|...+..-...|+.+.+..+++++.+
T Consensus 382 k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3466788888777888999999998988886
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-09 Score=105.37 Aligned_cols=159 Identities=13% Similarity=0.060 Sum_probs=122.6
Q ss_pred cCCHHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 012360 265 CGSLEEALVTFYKTDC---KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQL 340 (465)
Q Consensus 265 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 340 (465)
.|++++|.+.|++..+ .+...+..+...+...|++++|...+++..+. .| +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999988763 35678888999999999999999999999876 44 467888899999999999999999
Q ss_pred HHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CccchHHHHHHHHHhc---CChHHHHHHHHHHHHh
Q 012360 341 FRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-E-DKFISYKALLSACITY---SEFDLGKKVANNMMKL 415 (465)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 415 (465)
++++.+. .+.+...+..+..+|.+.|++++|.+.+++... . .+...+..+...+... |++++|.+.++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999853 244677889999999999999999999988654 3 3567788899999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 012360 416 GNQSHEAYVLLS 427 (465)
Q Consensus 416 ~p~~~~~~~~l~ 427 (465)
+|.+...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999888777666
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.12 E-value=5.4e-10 Score=89.54 Aligned_cols=159 Identities=11% Similarity=0.003 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHH
Q 012360 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363 (465)
Q Consensus 285 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 363 (465)
.+..+...+...|++++|...+++..+. .| +...+..+..++...|++++|+..++++... .|+...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKL 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHH
Confidence 3444556667777777777777776554 33 3556777777777788888888888777643 2333332222211
Q ss_pred -HHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHhhcCChHH
Q 012360 364 -LSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQS--HEAYVLLSNFYALEGHWTE 438 (465)
Q Consensus 364 -~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~ 438 (465)
+...+...+|...+++... .| +...+..+...+...|++++|+..|+++++..|+. +..+..++.++...|+.++
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 1122233345666666543 33 56778888888999999999999999999988765 4578899999999999999
Q ss_pred HHHHHHHHHH
Q 012360 439 VAEARRNMKE 448 (465)
Q Consensus 439 a~~~~~~~~~ 448 (465)
|...+++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988887654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-09 Score=107.40 Aligned_cols=151 Identities=9% Similarity=-0.056 Sum_probs=133.1
Q ss_pred HHcCChHHHHHHHHHHH--------HCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHH
Q 012360 294 ANYGLGNEALRVFYQME--------RKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364 (465)
Q Consensus 294 ~~~~~~~~a~~~~~~m~--------~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (465)
...|++++|.+.+++.. +. .| +...+..+..++...|++++|+..|+++.+. .+.+...+..+..++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHH
Confidence 77899999999999988 43 44 4567888899999999999999999999863 344678899999999
Q ss_pred HhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHH
Q 012360 365 SRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEA 442 (465)
Q Consensus 365 ~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 442 (465)
...|++++|.+.|++... .| +...|..+..++...|++++ ++.|+++++.+|+++..|..++.++.+.|++++|...
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998754 34 77889999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 012360 443 RRNMKEL 449 (465)
Q Consensus 443 ~~~~~~~ 449 (465)
+++..+.
T Consensus 557 ~~~al~l 563 (681)
T 2pzi_A 557 LDEVPPT 563 (681)
T ss_dssp HHTSCTT
T ss_pred HHhhccc
Confidence 9976543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.06 E-value=6.4e-10 Score=85.93 Aligned_cols=98 Identities=9% Similarity=0.018 Sum_probs=78.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 012360 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY 430 (465)
Q Consensus 353 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 430 (465)
+...+..+...+.+.|++++|...|+++.. .| ++..|..+..++...|++++|+..|+++++++|+++.+|..++.+|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 455667777778888888888888877644 33 6677888888888888888888888888888888888888888888
Q ss_pred hhcCChHHHHHHHHHHHHhc
Q 012360 431 ALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 431 ~~~g~~~~a~~~~~~~~~~~ 450 (465)
...|++++|...|++..+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 88888888888888776654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-09 Score=81.34 Aligned_cols=109 Identities=7% Similarity=-0.022 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHH
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSAC 396 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 396 (465)
..+......+.+.|++++|+..|+++.+. .+.+...|..+..+|.+.|++++|+..+++... +.+...|..++.++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 45666677777777777777777777642 234566677777777777777777777776543 23556677777777
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 012360 397 ITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429 (465)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 429 (465)
...|++++|++.|+++++++|+++.++..+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 777888888888888888888777766666554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.05 E-value=3e-09 Score=87.74 Aligned_cols=131 Identities=7% Similarity=0.003 Sum_probs=99.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHH
Q 012360 286 WTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364 (465)
Q Consensus 286 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (465)
...+...+...|++++|...|++..+. .| +...+..+..++...|++++|+..|+++.+. .+.+...+..+..+|
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 344788899999999999999999887 45 5678889999999999999999999999853 244677888888888
Q ss_pred HhcCC--HHHHHHHHHhCCCCC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc
Q 012360 365 SRAGL--LYQAEEFIKIMPAED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420 (465)
Q Consensus 365 ~~~g~--~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 420 (465)
...|+ ...+...++.+...+ ....+.....++...|++++|+..|++++++.|++.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 76654 445666777665322 223445566677788999999999999999999753
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-08 Score=84.26 Aligned_cols=175 Identities=9% Similarity=-0.073 Sum_probs=130.4
Q ss_pred hHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-CChhhHHHHHHHHHHcC----ChHHHHHHHHHH
Q 012360 235 YGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC-KDVVTWTTMIEGLANYG----LGNEALRVFYQM 309 (465)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m 309 (465)
+|...|++..+.| ++..+..+...|...+++++|...|++..+ .++..+..|...|.. + ++++|..+|++.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 3455555555543 455666666777777777777777766543 355666667777666 5 889999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCC---hhhHHHHHHHHHh----cCCHHHHHHHHH
Q 012360 310 ERKGIKPNEATFVSVLAACRH----SGLITEGCQLFRRMGGVYRVQPT---IEHFVCLVDLLSR----AGLLYQAEEFIK 378 (465)
Q Consensus 310 ~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~~ 378 (465)
.+.| +...+..|...|.. .+++++|+.+|++..+. .|+ +..+..|...|.. .+++++|..+|+
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7765 56677778888876 78999999999999854 332 6778888888888 789999999999
Q ss_pred hCCCC-CccchHHHHHHHHHhc-C-----ChHHHHHHHHHHHHhCCCC
Q 012360 379 IMPAE-DKFISYKALLSACITY-S-----EFDLGKKVANNMMKLGNQS 419 (465)
Q Consensus 379 ~~~~~-~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~p~~ 419 (465)
+.... +++..+..|...|... | ++++|+..|+++.+.+...
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 87654 5777888888888653 3 8999999999999987543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.04 E-value=4.3e-08 Score=85.61 Aligned_cols=161 Identities=9% Similarity=-0.024 Sum_probs=122.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC----hhhHH
Q 012360 288 TMIEGLANYGLGNEALRVFYQMERKGI-KPNEA----TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT----IEHFV 358 (465)
Q Consensus 288 ~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 358 (465)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|+..++++.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678888999999999999876421 22221 2334666777788999999999998853111222 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC-------CC--ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC------chhH
Q 012360 359 CLVDLLSRAGLLYQAEEFIKIMPA-------ED--KFISYKALLSACITYSEFDLGKKVANNMMKLGNQS------HEAY 423 (465)
Q Consensus 359 ~l~~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~ 423 (465)
.+...|...|++++|...++++.. .+ ...++..++..|.+.|++++|+..++++++..+.. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 899999999999999999887652 11 23478899999999999999999999999865322 5579
Q ss_pred HHHHHHHhhcCC-hHHHHHHHHHHHH
Q 012360 424 VLLSNFYALEGH-WTEVAEARRNMKE 448 (465)
Q Consensus 424 ~~l~~~~~~~g~-~~~a~~~~~~~~~ 448 (465)
..++.++.+.|+ +++|...+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999987754
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.6e-09 Score=94.08 Aligned_cols=178 Identities=11% Similarity=0.076 Sum_probs=113.1
Q ss_pred HHHHhcCCHHHHHHHHhcCCC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC--HHHHHHH
Q 012360 260 DMYSKCGSLEEALVTFYKTDC-----KD----VVTWTTMIEGLANYGLGNEALRVFYQMERK----GIKPN--EATFVSV 324 (465)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~--~~~~~~l 324 (465)
..|...|++++|...|.+... .+ ..+|+.+...|...|++++|...+++..+. | .|. ..++..+
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~l 122 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRA 122 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Confidence 344555666666555544321 11 235666777777778888888777775432 2 121 2466777
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CCc----cchHHHH
Q 012360 325 LAACRHSGLITEGCQLFRRMGGVYRVQP----TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA----EDK----FISYKAL 392 (465)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l 392 (465)
...|.. |++++|+..|++......-.. ...++..+...|.+.|++++|...|++... .++ ...+..+
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 778877 888888888888764211000 145677788888888898888888887643 111 1245666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchh-----HHHHHHHHhhcCChHHHHH
Q 012360 393 LSACITYSEFDLGKKVANNMMKLGNQSHEA-----YVLLSNFYALEGHWTEVAE 441 (465)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 441 (465)
+.++...|++++|+..|++++ ..|..... ...++.++ ..|+.+.+..
T Consensus 202 g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 667777789999999999988 77765432 33445544 5666666555
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3.7e-09 Score=101.73 Aligned_cols=148 Identities=12% Similarity=-0.038 Sum_probs=63.5
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 012360 297 GLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375 (465)
Q Consensus 297 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 375 (465)
|++++|...+++..+. .| +...+..+...+...|++++|...++++.+. .+.+...+..+..+|...|++++|.+
T Consensus 3 g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3444555555544433 22 2344444555555555555555555555431 12234444455555555555555555
Q ss_pred HHHhCCC-C-CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhc---CChHHHHHHHHHHHH
Q 012360 376 FIKIMPA-E-DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALE---GHWTEVAEARRNMKE 448 (465)
Q Consensus 376 ~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 448 (465)
.+++... . .+...+..+..++...|++++|++.++++++..|+++..+..++.++... |++++|.+.+++..+
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 5544322 1 23344455555555555555555555555555555555555555555555 555555555554433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-08 Score=85.28 Aligned_cols=184 Identities=13% Similarity=-0.038 Sum_probs=130.0
Q ss_pred HHHHHHHHHHhccchhhHhHHHHHHHHHHcCCC-C-ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-hh---hHHH
Q 012360 217 EEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT-Q-DAFVKTALIDMYSKCGSLEEALVTFYKTDC--KD-VV---TWTT 288 (465)
Q Consensus 217 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~---~~~~ 288 (465)
...+..+...+...|++++|...|+.+.+.... + ....+..+..+|.+.|++++|+..|++..+ |+ .. .+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 345556667788999999999999999886422 1 235778899999999999999999988652 32 22 4555
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcCCC
Q 012360 289 MIEGLAN------------------YGLGNEALRVFYQMERKGIKPNEA-TFVSVLAACRHSGLITEGCQLFRRMGGVYR 349 (465)
Q Consensus 289 l~~~~~~------------------~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 349 (465)
+..++.. .|++++|...|+++.+. .|+.. ........ ..+....
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHH-----
Confidence 5555554 57899999999999987 56543 22211110 0001111
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCc----cchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 350 VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDK----FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 350 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
......+...|.+.|++++|...|+.+.. .|+ ...+..++.++.+.|++++|++.++.+...+|++..
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 11223567788899999999999988754 333 246788889999999999999999999988887764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.01 E-value=6.8e-09 Score=85.94 Aligned_cols=130 Identities=10% Similarity=-0.064 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHH
Q 012360 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLL 364 (465)
Q Consensus 285 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (465)
.+..+...+...|++++|...|++.. .|+...+..+..++...|++++|+..++++... .+.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 45566677788888888888887663 567778888888888888888888888888753 244567778888888
Q ss_pred HhcCCHHHHHHHHHhCCC--CCcc----------------chHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc
Q 012360 365 SRAGLLYQAEEFIKIMPA--EDKF----------------ISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420 (465)
Q Consensus 365 ~~~g~~~~A~~~~~~~~~--~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 420 (465)
...|++++|.+.|++... +.+. ..+..+..++...|++++|.+.++++++..|.+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 888888888888877533 1122 5677788888888888888888888888888763
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.1e-09 Score=93.58 Aligned_cols=196 Identities=9% Similarity=-0.006 Sum_probs=148.3
Q ss_pred cchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHh-cCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 012360 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSK-CGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFY 307 (465)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 307 (465)
..|++++|..++++..+... .. +.+ .++++.|...|.+ ....|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence 46788888888888776421 11 112 5788888887654 4667888999999999998
Q ss_pred HHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC---CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 012360 308 QMERK----GIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVY---RVQP-TIEHFVCLVDLLSRAGLLYQAEEFIK 378 (465)
Q Consensus 308 ~m~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 378 (465)
+..+. |-.+. ..+|..+..+|...|++++|+..|++..+.. +... ...++..+...|.. |++++|...++
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 87653 21111 3478888899999999999999999876421 1111 24577888889988 99999999998
Q ss_pred hCCC----CC----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc------hhHHHHHHHHhhcCChHHHHHHHH
Q 012360 379 IMPA----ED----KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH------EAYVLLSNFYALEGHWTEVAEARR 444 (465)
Q Consensus 379 ~~~~----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~ 444 (465)
+... .+ ...++..+...+...|++++|+..|+++++..|.+. ..+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7643 11 145688899999999999999999999999765443 257778888889999999999999
Q ss_pred HHH
Q 012360 445 NMK 447 (465)
Q Consensus 445 ~~~ 447 (465)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 876
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.99 E-value=2.8e-07 Score=86.26 Aligned_cols=354 Identities=7% Similarity=-0.022 Sum_probs=215.8
Q ss_pred hcC-ChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCC-hHHH
Q 012360 61 DFS-DSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKE-MDEA 138 (465)
Q Consensus 61 ~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 138 (465)
+.| +++.|..+|+++... -|. ++.+.+..+|++.+.. .|+...|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 488899999988764 344 8999999999999885 4688899888887777663 4556
Q ss_pred HHHHHhh----CCCC-CchhHHHHHHHHH----hcCChHHHHHHHHHhhc-C--Ch-HHHHHHHHHHHHc----------
Q 012360 139 LRLFDEM----GSRR-NIVSLNILINGYI----DMELVDLAREVFDEIVD-K--DI-VLWRSMMHGCVKA---------- 195 (465)
Q Consensus 139 ~~~~~~~----~~~~-~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~-~--~~-~~~~~l~~~~~~~---------- 195 (465)
..+|+.. |..| +...|...+..+. ..++.+.+.++|++.+. | +. ..|..... +...
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFEN-FELELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHH-HHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHH-HHHHhccccHHHHH
Confidence 6667665 4333 5567777776654 35678889999998855 2 11 22332222 1111
Q ss_pred ----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc----h---hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 012360 196 ----KQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSL----S---NLQYGRLVHRFILQNNITQDAFVKTALIDMYSK 264 (465)
Q Consensus 196 ----g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 264 (465)
+.+..|..+++.+...-...+...|...+.--... . ..+.+..+|++++... +.+...|...+..+.+
T Consensus 147 ~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~ 225 (493)
T 2uy1_A 147 GDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIG 225 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 12233444444443310011223444433332111 1 1345677888887753 5567788888888889
Q ss_pred cCCHHHHHHHHhcCCC-C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHh
Q 012360 265 CGSLEEALVTFYKTDC-K-DVVTWTTMIEGLANYGLGNEALRVFYQMERKG---------IKP---NEATFVSVLAACRH 330 (465)
Q Consensus 265 ~~~~~~a~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---------~~p---~~~~~~~l~~~~~~ 330 (465)
.|+.+.|..+|++... | +...|. .|....+.++. ++.+.+.- ..+ ....|...+....+
T Consensus 226 ~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r 298 (493)
T 2uy1_A 226 IGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK 298 (493)
T ss_dssp TTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH
Confidence 9999999999976442 3 222222 23322222222 33332210 011 12345666666667
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHH
Q 012360 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG-LLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKK 407 (465)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~ 407 (465)
.++.+.|..+|+++ ... ..+...|...+..-...+ +.+.|..+|+.... -| ++..|...+....+.|+.+.|..
T Consensus 299 ~~~~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~ 375 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARA 375 (493)
T ss_dssp HHCHHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHh-hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 78899999999999 331 234445543333333333 69999999987643 22 34456667777788999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 408 VANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 408 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
+|+++ +.....|...+..-...|+.+.+..+++++.+
T Consensus 376 l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 376 LFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99997 34566788888888888999999998887764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.3e-09 Score=78.80 Aligned_cols=97 Identities=10% Similarity=0.109 Sum_probs=88.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 012360 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPA-E-DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431 (465)
Q Consensus 354 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 431 (465)
...+......|.+.|++++|.+.|++... . .+...|..+..++...|++++|+..++++++++|+++.+|..++.++.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 56677889999999999999999998754 3 477889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHhc
Q 012360 432 LEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 432 ~~g~~~~a~~~~~~~~~~~ 450 (465)
..|++++|.+.+++..+..
T Consensus 93 ~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHC
Confidence 9999999999999887653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.2e-08 Score=87.52 Aligned_cols=163 Identities=7% Similarity=-0.059 Sum_probs=119.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC--CCCC--hh
Q 012360 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-E----ATFVSVLAACRHSGLITEGCQLFRRMGGVYR--VQPT--IE 355 (465)
Q Consensus 285 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~~ 355 (465)
.+...+..+...|++++|.+.+.+..+...... . ..+..+...+...|++++|+..++++..... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344556677888889999888888776532211 1 1234455667788899999999998874211 1121 44
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCC----CCc-----cchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC------Cc
Q 012360 356 HFVCLVDLLSRAGLLYQAEEFIKIMPA----EDK-----FISYKALLSACITYSEFDLGKKVANNMMKLGNQ------SH 420 (465)
Q Consensus 356 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~ 420 (465)
+++.+...|...|++++|...+++... .++ ..++..++..|...|++++|+..++++++..+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788889999999999999999887641 221 257888999999999999999999999886422 14
Q ss_pred hhHHHHHHHHhhcCChHHH-HHHHHHHH
Q 012360 421 EAYVLLSNFYALEGHWTEV-AEARRNMK 447 (465)
Q Consensus 421 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 447 (465)
.+|..++.+|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5788999999999999999 77777654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-09 Score=83.91 Aligned_cols=100 Identities=11% Similarity=-0.046 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHH
Q 012360 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACI 397 (465)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 397 (465)
.+..+...+...|++++|+..|+++... .+.+...+..+..+|...|++++|...|++... +.++..+..+..++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 3444445555555555555555555431 122444444555555555555555555554322 223444555555555
Q ss_pred hcCChHHHHHHHHHHHHhCCCCch
Q 012360 398 TYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 398 ~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
..|++++|+..|+++++..|+++.
T Consensus 101 ~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred HcCCHHHHHHHHHHHHHHCcCCCc
Confidence 555555555555555555554443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.96 E-value=9.3e-09 Score=81.20 Aligned_cols=128 Identities=5% Similarity=-0.030 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHH
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSAC 396 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 396 (465)
..+..+...+...|++++|...|++.... .+.+...+..+..++...|++++|.+.+++... +.+...|..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34566667777788888888888887752 234567777788888888888888888877543 23566788888999
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH--HhhcCChHHHHHHHHHHHH
Q 012360 397 ITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNF--YALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~ 448 (465)
...|++++|+..++++++..|.+...+..+..+ +...|++++|...+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999998877555444 8888999999999987653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.8e-08 Score=81.81 Aligned_cols=119 Identities=11% Similarity=-0.037 Sum_probs=54.7
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 012360 258 LIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGL 333 (465)
Q Consensus 258 l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~ 333 (465)
+..+|...|++++|...|++.. +.+...+..+...+...|++++|...|++..+. .| +..++..+..++...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhH
Confidence 4455555555555555554433 223445555555555555555555555555554 23 23445555555443332
Q ss_pred --HHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012360 334 --ITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 334 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (465)
.+.+...++.... ..|....+..+..++...|++++|...|++..
T Consensus 138 ~~~~~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 184 (208)
T 3urz_A 138 QEKKKLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184 (208)
T ss_dssp HHHHHHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 2233333333321 11222223333444455555566665555543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.2e-07 Score=78.15 Aligned_cols=225 Identities=11% Similarity=0.016 Sum_probs=139.3
Q ss_pred hhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhccch--hhHhHHHHHHHHHHcCCCCChhHHHHHHHHH----Hhc---CC
Q 012360 198 PEEALELFKKMIDEGVTPD-EEVMVSVLSACSSLS--NLQYGRLVHRFILQNNITQDAFVKTALIDMY----SKC---GS 267 (465)
Q Consensus 198 ~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 267 (465)
.++|++.++.++.. .|+ ...++.--..+...+ ++++++..++.+...+ +-+..+|+.-..++ ... ++
T Consensus 49 s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 34566666666553 232 233444444444444 6666666666665543 22333343333322 333 56
Q ss_pred HHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HHH
Q 012360 268 LEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGN--EALRVFYQMERKGIKPNEATFVSVLAACRHSGL------ITE 336 (465)
Q Consensus 268 ~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~------~~~ 336 (465)
+++++.+++++. +.|..+|+.-.-.+.+.+.++ ++++.++++.+.. .-|...|+.-...+...+. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 667777666654 235556666666666677777 8888888888763 2255666666555666565 788
Q ss_pred HHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHhCCC-----CCccchHHHHHHHHHhcCChHHHHHHHH
Q 012360 337 GCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ-AEEFIKIMPA-----EDKFISYKALLSACITYSEFDLGKKVAN 410 (465)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 410 (465)
+++.++++... .+-|...|+.+...+.+.|+... +..+..++.. ..++..+..++..+.+.|+.++|+++++
T Consensus 205 El~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 205 ELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 88888888752 34567778777777878777444 4456665543 1255667778888888888888888888
Q ss_pred HHHH-hCCCCchhHHHHHH
Q 012360 411 NMMK-LGNQSHEAYVLLSN 428 (465)
Q Consensus 411 ~~~~-~~p~~~~~~~~l~~ 428 (465)
.+.+ .+|.....|...+.
T Consensus 283 ~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 283 LLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHTTCGGGHHHHHHHHH
T ss_pred HHHhccChHHHHHHHHHHh
Confidence 8886 67887776665544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-08 Score=81.55 Aligned_cols=156 Identities=7% Similarity=-0.108 Sum_probs=100.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHh
Q 012360 255 KTALIDMYSKCGSLEEALVTFYKTDC---KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA-CRH 330 (465)
Q Consensus 255 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~-~~~ 330 (465)
+......+...|++++|...|++... .+...+..+...+...|++++|...+++..+. .|+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 34455666777777777777777663 34556777777777777777777777776554 3333322222111 112
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCc---cchHHHHHHHHHhcCChHHHH
Q 012360 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDK---FISYKALLSACITYSEFDLGK 406 (465)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---~~~~~~l~~~~~~~~~~~~a~ 406 (465)
.+....|+..++++.+. .+.+...+..+..++...|++++|...|+++.. .|+ ...+..++..+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22333467777777642 233567777788888888888888888876543 332 446777888888888888888
Q ss_pred HHHHHHHH
Q 012360 407 KVANNMMK 414 (465)
Q Consensus 407 ~~~~~~~~ 414 (465)
..|++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.7e-07 Score=81.15 Aligned_cols=216 Identities=9% Similarity=-0.016 Sum_probs=169.4
Q ss_pred cchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC--CHHHHHHHHhcCCC---CChhhHHHHHHHH----HHc---
Q 012360 229 SLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG--SLEEALVTFYKTDC---KDVVTWTTMIEGL----ANY--- 296 (465)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~l~~~~----~~~--- 296 (465)
+....++|...+..++..+ +-+..+++.-..++...+ +++++++.++.+.. .+..+|+.-...+ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 45 AEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcccc
Confidence 3344568999999998876 445667788888888888 99999999988663 3555676655555 455
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCC-----
Q 012360 297 GLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLIT--EGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGL----- 369 (465)
Q Consensus 297 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 369 (465)
+++++++.+++++.+.. +-+...+..-...+.+.|.++ ++++.++++.+. .+-+...|+.-...+.+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhh
Confidence 78999999999999873 336778877777778888888 999999999963 34567777777777777776
Q ss_pred -HHHHHHHHHhCCC-C-CccchHHHHHHHHHhcCChH-HHHHHHHHHHHhC---CCCchhHHHHHHHHhhcCChHHHHHH
Q 012360 370 -LYQAEEFIKIMPA-E-DKFISYKALLSACITYSEFD-LGKKVANNMMKLG---NQSHEAYVLLSNFYALEGHWTEVAEA 442 (465)
Q Consensus 370 -~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~ 442 (465)
++++++.++.+.. . .|...|+.+...+.+.|+.. .+..+.+++.+.+ |.++.++..++.+|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 8889988887643 3 47888999888888888744 4667888887776 88889999999999999999999999
Q ss_pred HHHHHH
Q 012360 443 RRNMKE 448 (465)
Q Consensus 443 ~~~~~~ 448 (465)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999864
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=6.9e-08 Score=83.90 Aligned_cols=159 Identities=11% Similarity=-0.011 Sum_probs=86.0
Q ss_pred HHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhhHH-HHHHHHH
Q 012360 218 EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDC--KDVVTWT-TMIEGLA 294 (465)
Q Consensus 218 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~-~l~~~~~ 294 (465)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++++.. |+..... .....+.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence 334444444555556666666665555543 23455566666666666777777666666553 3222111 1122244
Q ss_pred HcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHH
Q 012360 295 NYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQA 373 (465)
Q Consensus 295 ~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 373 (465)
..++.++|...+++..+. .| +...+..+...+...|++++|+..|+++.+...-..+...+..++..+...|+.++|
T Consensus 197 ~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred hhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 555566666666666655 33 345566666666666677777666666664311111144555566666666665555
Q ss_pred HHHHHh
Q 012360 374 EEFIKI 379 (465)
Q Consensus 374 ~~~~~~ 379 (465)
...+++
T Consensus 275 ~~~~r~ 280 (287)
T 3qou_A 275 ASXYRR 280 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-08 Score=76.75 Aligned_cols=116 Identities=8% Similarity=-0.032 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHH
Q 012360 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSA 395 (465)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 395 (465)
...+..+...+...|++++|...++++.+. .+.+...+..+..++...|++++|.+.+++... +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 456666777777777777777777777642 233566677777777777777777777776543 2355677788888
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCC
Q 012360 396 CITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435 (465)
Q Consensus 396 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 435 (465)
+...|++++|++.++++++..|.+...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888889999999999888888888888888888877664
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-08 Score=76.40 Aligned_cols=118 Identities=7% Similarity=-0.106 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHH
Q 012360 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSA 395 (465)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 395 (465)
...+..+...+...|++++|...++++... .+.+...+..+...+...|++++|.+.+++... +.+...+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 456666777777888888888888887742 234566777788888888888888888876543 2356678888889
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChH
Q 012360 396 CITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWT 437 (465)
Q Consensus 396 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 437 (465)
+...|++++|...++++++..|.++..+..++.++.+.|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999998888753
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.90 E-value=2.2e-08 Score=74.60 Aligned_cols=115 Identities=15% Similarity=0.135 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHH
Q 012360 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSA 395 (465)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 395 (465)
...+..+...+...|++++|...++++... .+.+...+..+...+...|++++|..+++++.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 355666677777777888888777777642 234566677777777788888888877776543 2355677888888
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC
Q 012360 396 CITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434 (465)
Q Consensus 396 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 434 (465)
+...|++++|...++++.+..|.++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 889999999999999999999998888888888776654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-08 Score=91.18 Aligned_cols=126 Identities=10% Similarity=-0.012 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC----------------hhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT----------------IEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (465)
..+..+...+.+.|++++|+..|+++... .|+ ...+..+..+|.+.|++++|...++++..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666777777777777776642 232 46788888999999999999999887654
Q ss_pred --CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHH-HHHHHHHH
Q 012360 383 --EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEV-AEARRNMK 447 (465)
Q Consensus 383 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 447 (465)
+.+...|..+..++...|++++|+..|++++++.|.+..++..++.++.+.|++++| ...++.|.
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336778899999999999999999999999999999999999999999999999998 44555553
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.89 E-value=6.5e-08 Score=79.93 Aligned_cols=126 Identities=9% Similarity=-0.078 Sum_probs=106.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 012360 254 VKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL 333 (465)
Q Consensus 254 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 333 (465)
.+..+...+...|++++|...|++...++...+..+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 455677888899999999999999988888899999999999999999999999988763 3356788889999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCC----------------hhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012360 334 ITEGCQLFRRMGGVYRVQPT----------------IEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (465)
+++|+..|+++.+.. +.+ ...+..+..+|...|++++|.+.++....
T Consensus 87 ~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 87 YDLAIKDLKEALIQL--RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHHHTT--TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC--CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999998631 222 26788899999999999999999988654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.88 E-value=6.3e-09 Score=83.32 Aligned_cols=126 Identities=12% Similarity=0.105 Sum_probs=84.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHH-HHhcCCH-
Q 012360 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL-LSRAGLL- 370 (465)
Q Consensus 293 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 370 (465)
+...|++++|...+++..+.. +.+...+..+...+...|++++|+..|+++.+. .+.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 345677777887887776652 234567777777788888888888888877742 23355666667777 6677777
Q ss_pred -HHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 371 -YQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 371 -~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
++|...++++.. .| +...+..+...+...|++++|+..++++++..|+++.
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 777777776543 23 4566777777777778888888888888877777655
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.86 E-value=6.5e-09 Score=90.06 Aligned_cols=189 Identities=9% Similarity=-0.122 Sum_probs=115.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 012360 252 AFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAA 327 (465)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~ 327 (465)
...+..+...+...|++++|...|++.. +.+...|..+...|...|++++|...+++..+. .| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3455556666666677777766666543 235566777777777778888888887777765 34 45677777788
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHH
Q 012360 328 CRHSGLITEGCQLFRRMGGVYRVQPT-IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGK 406 (465)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 406 (465)
+...|++++|+..|+++.+. .|+ ...+...+....+..+...... .......++......+.. + ..|++++|+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHHH
Confidence 88888888888888877642 121 1111111211111111111111 122222334444333332 2 368889999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhhc-CChHHHHHHHHHHHH
Q 012360 407 KVANNMMKLGNQSHEAYVLLSNFYALE-GHWTEVAEARRNMKE 448 (465)
Q Consensus 407 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 448 (465)
+.++++.+..|++......+...+.+. +.+++|.++|++..+
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999988888877777777666665 678889988887754
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.86 E-value=9e-09 Score=79.01 Aligned_cols=99 Identities=10% Similarity=-0.019 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHh
Q 012360 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACIT 398 (465)
Q Consensus 321 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~ 398 (465)
+..+...+...|++++|+..|+++... .+.+...|..+..+|.+.|++++|...|++... +.++..+..+..++..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 334444555555555555555555431 122344444555555555555555555554322 2234444455555555
Q ss_pred cCChHHHHHHHHHHHHhCCCCch
Q 012360 399 YSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 399 ~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.|++++|+..|+++++..|+++.
T Consensus 99 ~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCGG
T ss_pred cCCHHHHHHHHHHHHHhCCCCcc
Confidence 55555555555555555554444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-07 Score=80.01 Aligned_cols=137 Identities=9% Similarity=-0.104 Sum_probs=92.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC--hhhHHHHHHHH
Q 012360 287 TTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT--IEHFVCLVDLL 364 (465)
Q Consensus 287 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 364 (465)
..+...+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 34556666777777777777766654 354434455556777788888888888755531 1 111 23566777888
Q ss_pred HhcCCHHHHHHHHHhCCCCC-----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 012360 365 SRAGLLYQAEEFIKIMPAED-----KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSN 428 (465)
Q Consensus 365 ~~~g~~~~A~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 428 (465)
.+.|++++|+..|++....+ ....+.....++.+.|+.++|..+|+++...+|. ...+..|..
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 88888888888888764322 2234566677778888888888888888888888 665555543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.9e-08 Score=75.35 Aligned_cols=92 Identities=10% Similarity=-0.052 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC
Q 012360 357 FVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 434 (465)
+..+...+.+.|++++|...|++... +.+...|..+..++...|++++|+..++++++.+|.++..+..++.++...|
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 34444445555555555555544322 1234445555555555555555555555555555555555555555555555
Q ss_pred ChHHHHHHHHHHHH
Q 012360 435 HWTEVAEARRNMKE 448 (465)
Q Consensus 435 ~~~~a~~~~~~~~~ 448 (465)
++++|...+++..+
T Consensus 87 ~~~~A~~~~~~al~ 100 (126)
T 3upv_A 87 EYASALETLDAART 100 (126)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.82 E-value=5.1e-08 Score=75.18 Aligned_cols=104 Identities=12% Similarity=0.050 Sum_probs=90.0
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHH
Q 012360 315 KPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKA 391 (465)
Q Consensus 315 ~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ 391 (465)
.|+ ...+..+...+.+.|++++|+..|+++... .+.+...|..+..+|...|++++|...|++... +.++..|..
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 454 357778888999999999999999999853 344688899999999999999999999998754 347888999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCc
Q 012360 392 LLSACITYSEFDLGKKVANNMMKLGNQSH 420 (465)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 420 (465)
+..++...|++++|+..|++++++.|+++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999998765
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.82 E-value=3e-08 Score=72.23 Aligned_cols=100 Identities=10% Similarity=0.036 Sum_probs=82.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCC--CchhHHHHHH
Q 012360 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQ--SHEAYVLLSN 428 (465)
Q Consensus 353 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 428 (465)
+...+..+...+...|++++|...+++... +.+...+..+...+...|++++|++.++++++..|. +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 455666777788888888888888877643 335667888888999999999999999999999999 8889999999
Q ss_pred HHhhc-CChHHHHHHHHHHHHhcCC
Q 012360 429 FYALE-GHWTEVAEARRNMKELQTR 452 (465)
Q Consensus 429 ~~~~~-g~~~~a~~~~~~~~~~~~~ 452 (465)
++... |++++|.+.+++.......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999 9999999999988765443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.81 E-value=5.6e-07 Score=78.45 Aligned_cols=202 Identities=7% Similarity=-0.082 Sum_probs=136.4
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChh---HHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 012360 205 FKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAF---VKTALIDMYSKCGSLEEALVTFYKTDCK 281 (465)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 281 (465)
+..+......|+..+...+...+.-.-+ .+.......+.. .+...+..+...|++++|...+++....
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPII---------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 3444433346776666666655542211 111111112222 2333467788899999999999875431
Q ss_pred ---Ch------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 012360 282 ---DV------VTWTTMIEGLANYGLGNEALRVFYQMERKGIK-PN----EATFVSVLAACRHSGLITEGCQLFRRMGGV 347 (465)
Q Consensus 282 ---~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 347 (465)
+. ..+..+...+...+++++|...+++..+.... ++ ..+++.+..+|...|++++|+..++++.+.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11 12334666677778999999999999874322 22 236888999999999999999999998731
Q ss_pred C----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----ccchHHHHHHHHHhcCC-hHHHHHHHHHHH
Q 012360 348 Y----RVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA----ED----KFISYKALLSACITYSE-FDLGKKVANNMM 413 (465)
Q Consensus 348 ~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~ 413 (465)
. +..+ ...++..+...|.+.|++++|.+.+++... .. -..+|..++.++.+.|+ +++|.+.+++++
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1 1112 244778899999999999999999887643 11 24578889999999995 699999999998
Q ss_pred Hh
Q 012360 414 KL 415 (465)
Q Consensus 414 ~~ 415 (465)
+.
T Consensus 265 ~i 266 (293)
T 3u3w_A 265 FF 266 (293)
T ss_dssp HH
T ss_pred HH
Confidence 74
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.2e-08 Score=77.38 Aligned_cols=109 Identities=11% Similarity=0.047 Sum_probs=91.2
Q ss_pred HHHHHhhcCCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 012360 339 QLFRRMGGVYRVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKL 415 (465)
Q Consensus 339 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 415 (465)
..++++.. ..| +...+..+...+.+.|++++|...|+.+.. +.+...|..+..++...|++++|+..|+++++.
T Consensus 8 ~~~~~al~---~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 8 GTIAMLNE---ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CSHHHHTT---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHc---CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34555553 234 566777888899999999999999988754 347778889999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 416 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
+|+++..+..++.+|...|++++|...+++..+..
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999887654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=2.6e-08 Score=73.90 Aligned_cols=95 Identities=12% Similarity=-0.081 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhh
Q 012360 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL 432 (465)
Q Consensus 355 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 432 (465)
..+..+...+.+.|++++|...|++... .| +...|..+..++...|++++|+..++++++++|+++..+..++.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3456677888999999999999988754 33 777888999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHh
Q 012360 433 EGHWTEVAEARRNMKEL 449 (465)
Q Consensus 433 ~g~~~~a~~~~~~~~~~ 449 (465)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999987654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.2e-07 Score=78.55 Aligned_cols=183 Identities=9% Similarity=-0.083 Sum_probs=129.6
Q ss_pred hcCCHHHHHHHHhcCCC---CChhhHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCC----------------
Q 012360 264 KCGSLEEALVTFYKTDC---KDVVTWTTM-------IEGLANYGLGNEALRVFYQMERKGIKPN---------------- 317 (465)
Q Consensus 264 ~~~~~~~a~~~~~~~~~---~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~m~~~g~~p~---------------- 317 (465)
..++...|.+.|.++.. .....|..+ ...+...++..+++..+.+-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 35666666666665442 233455554 3444444445555555554433 2222
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCc----cc
Q 012360 318 ------EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDK----FI 387 (465)
Q Consensus 318 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~ 387 (465)
......+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+.....++ ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 123344667788999999999999999853 35433666777789999999999999997765442 23
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhC--CC-CchhHHHHHHHHhhcCChHHHHHHHHHHHHhcC
Q 012360 388 SYKALLSACITYSEFDLGKKVANNMMKLG--NQ-SHEAYVLLSNFYALEGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 451 (465)
.+..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|...|+++.....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 67788999999999999999999998533 33 445788999999999999999999999987654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.3e-08 Score=76.76 Aligned_cols=111 Identities=9% Similarity=-0.015 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHH
Q 012360 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLS 394 (465)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 394 (465)
+...+..+...+...|++++|+..|+++.+. .+.+...+..+..+|.+.|++++|...+++... +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567888889999999999999999999853 244778889999999999999999999988754 336778999999
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 012360 395 ACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429 (465)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 429 (465)
++...|++++|+..|++++++.|++...+...+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 99999999999999999999999998865554433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.75 E-value=7.6e-08 Score=73.15 Aligned_cols=94 Identities=10% Similarity=-0.034 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 012360 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431 (465)
Q Consensus 354 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 431 (465)
...+..+...+...|++++|...|+.... +.+...|..++.++...|++++|+..++++++.+|.++..+..++.++.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 33444444444444444444444443322 1133344444555555555555555555555555555555555555555
Q ss_pred hcCChHHHHHHHHHHH
Q 012360 432 LEGHWTEVAEARRNMK 447 (465)
Q Consensus 432 ~~g~~~~a~~~~~~~~ 447 (465)
..|++++|...+++..
T Consensus 89 ~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 89 EMESYDEAIANLQRAY 104 (137)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 5555555555555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.74 E-value=3.5e-08 Score=73.92 Aligned_cols=93 Identities=8% Similarity=0.011 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch-------hHHHH
Q 012360 356 HFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE-------AYVLL 426 (465)
Q Consensus 356 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l 426 (465)
.+..+...+.+.|++++|++.|++... .| +...|..+..+|...|++++|++.+++++++.|.+.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 344455555555555555555554432 22 4445555666666666666666666666665554332 34555
Q ss_pred HHHHhhcCChHHHHHHHHHHHH
Q 012360 427 SNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 427 ~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
+.++...|++++|++.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5566666666666666665543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=6.8e-08 Score=78.84 Aligned_cols=95 Identities=7% Similarity=-0.080 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhh
Q 012360 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL 432 (465)
Q Consensus 355 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 432 (465)
..+..+..+|...|++++|...++.... +.+...+..+..++...|++++|+..|+++++..|.++.++..+..++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 5677788888888888888888887643 33667888899999999999999999999999999999999999999999
Q ss_pred cCChHHHH-HHHHHHHHh
Q 012360 433 EGHWTEVA-EARRNMKEL 449 (465)
Q Consensus 433 ~g~~~~a~-~~~~~~~~~ 449 (465)
.|+.+++. ..++.|...
T Consensus 169 ~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHC------------
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 99888877 555555443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.74 E-value=9.1e-07 Score=77.10 Aligned_cols=164 Identities=5% Similarity=-0.140 Sum_probs=119.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCh------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--H
Q 012360 253 FVKTALIDMYSKCGSLEEALVTFYKTDC---KDV------VTWTTMIEGLANYGLGNEALRVFYQMERKGI---KPN--E 318 (465)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~ 318 (465)
..+...+..+...|++++|.+.+.+..+ ... ..+..+...+...|++++|...+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445567778888999999888865331 111 2234455667788899999999998875421 122 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----c
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT-----IEHFVCLVDLLSRAGLLYQAEEFIKIMPA----ED----K 385 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~ 385 (465)
.+++.+...|...|++++|+..++++.+.....|+ ..++..+...|...|++++|.+.+++... .+ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888899999999999999999998722111122 25788899999999999999999987643 11 1
Q ss_pred cchHHHHHHHHHhcCChHHH-HHHHHHHHHhC
Q 012360 386 FISYKALLSACITYSEFDLG-KKVANNMMKLG 416 (465)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~~ 416 (465)
..+|..++.++...|++++| ...++++....
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 45688899999999999999 88899887743
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.73 E-value=6.9e-08 Score=73.98 Aligned_cols=98 Identities=9% Similarity=0.003 Sum_probs=82.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 012360 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY 430 (465)
Q Consensus 353 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 430 (465)
+...+..+...+.+.|++++|...|+.+.. .| +...|..+..++...|++++|+..|+++++.+|+++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 455666778888899999999999887643 33 6777888888889999999999999999999999999899999999
Q ss_pred hhcCChHHHHHHHHHHHHhc
Q 012360 431 ALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 431 ~~~g~~~~a~~~~~~~~~~~ 450 (465)
...|++++|...+++..+..
T Consensus 97 ~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999998876554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.3e-07 Score=69.46 Aligned_cols=109 Identities=13% Similarity=-0.019 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHH
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSAC 396 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 396 (465)
..+..+...+...|++++|...++++... .+.+...+..+...+...|++++|...+++... +.+...+..++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34445555555666666666666665532 122444555555555556666666655554432 12344555666666
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 012360 397 ITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429 (465)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 429 (465)
...|++++|...++++.+..|.++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 666666666666666666666666555554443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.71 E-value=9.1e-08 Score=71.56 Aligned_cols=111 Identities=8% Similarity=-0.072 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHH
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSAC 396 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~ 396 (465)
..+..+...+.+.|++++|+..|++..+. .+.+...+..+..++.+.|++++|...+++... .| +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45666777788888888888888888752 234577788888888888888888888877644 33 567788888999
Q ss_pred HhcCChHHHHHHHHHHHHhC------CCCchhHHHHHHHHh
Q 012360 397 ITYSEFDLGKKVANNMMKLG------NQSHEAYVLLSNFYA 431 (465)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 431 (465)
...|++++|+..++++++.. |.+..+...+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99999999999999999988 777776666665543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.70 E-value=9.6e-08 Score=76.34 Aligned_cols=121 Identities=11% Similarity=0.068 Sum_probs=93.9
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHH-HHhcCCh--H
Q 012360 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSA-CITYSEF--D 403 (465)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~-~~~~~~~--~ 403 (465)
...|++++|+..+++.... .+.+...+..+...|...|++++|...|++... +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 4567888888888888753 244677888888889999999999998887654 3356677777777 6788888 9
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcC
Q 012360 404 LGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 404 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 451 (465)
+|+..++++++..|.++..+..++.++...|++++|...++++.+...
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 999999999999998888888999999999999999999988776543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-07 Score=74.57 Aligned_cols=96 Identities=11% Similarity=-0.121 Sum_probs=59.2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHH
Q 012360 283 VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362 (465)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 362 (465)
...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..++++.+. .+.+...+..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3455566666666667777777666666552 224556666666666667777777766666642 1234556666666
Q ss_pred HHHhcCCHHHHHHHHHhCC
Q 012360 363 LLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 363 ~~~~~g~~~~A~~~~~~~~ 381 (465)
+|...|++++|.+.|++..
T Consensus 88 ~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHH
Confidence 6666677777766666553
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-07 Score=71.29 Aligned_cols=100 Identities=12% Similarity=0.022 Sum_probs=89.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 012360 351 QPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSN 428 (465)
Q Consensus 351 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 428 (465)
+.+...+..+...+...|++++|.+.+++... .| +...+..+...+...|++++|+..++++++..|.++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 34567788899999999999999999998654 33 67788999999999999999999999999999999999999999
Q ss_pred HHhhcCChHHHHHHHHHHHHhc
Q 012360 429 FYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 429 ~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
++.+.|++++|...+++..+..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999887653
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.3e-07 Score=70.54 Aligned_cols=112 Identities=9% Similarity=-0.080 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHH
Q 012360 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT----IEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYK 390 (465)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~ 390 (465)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|...+++... .| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 3455666666667777777777777777632 344 45666666677777777777777665433 22 455667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 012360 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431 (465)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 431 (465)
.+..++...|++++|...++++++..|.+...+..+.....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 77777778888888888888888888887776666655543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.5e-07 Score=77.06 Aligned_cols=129 Identities=7% Similarity=-0.029 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCC---CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CC-----c
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVY---RVQP-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA----ED-----K 385 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-----~ 385 (465)
..+..+...+...|++++|...+++..... +..+ ...++..+...+...|++++|.+.+++... .+ .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 344445555555555555555555543210 1111 233444555555555555555555544321 11 1
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHhC--CCCc----hhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 386 FISYKALLSACITYSEFDLGKKVANNMMKLG--NQSH----EAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
...+..+...+...|++++|+..++++++.. ..++ .++..++.++...|++++|...+++..
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 2235555666666666666666666666532 1111 124566666666677777666666554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.6e-07 Score=69.05 Aligned_cols=97 Identities=7% Similarity=0.012 Sum_probs=86.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 012360 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY 430 (465)
Q Consensus 353 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 430 (465)
....+..+...+...|++++|...+++... +.+...+..++..+...|++++|...++++++..|.++..+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 345677888999999999999999998754 336778889999999999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHHHh
Q 012360 431 ALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 431 ~~~g~~~~a~~~~~~~~~~ 449 (465)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999988654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.1e-07 Score=69.07 Aligned_cols=97 Identities=20% Similarity=0.225 Sum_probs=87.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 012360 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431 (465)
Q Consensus 354 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 431 (465)
...+..+...+...|++++|.+.++++.. +.+..++..++..+...|++++|+..++++.+..|.++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 56788889999999999999999988754 3366788899999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHhc
Q 012360 432 LEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 432 ~~g~~~~a~~~~~~~~~~~ 450 (465)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999887653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.63 E-value=6e-07 Score=70.60 Aligned_cols=129 Identities=8% Similarity=-0.091 Sum_probs=95.0
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHH
Q 012360 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363 (465)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 363 (465)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|+..+++.... .+.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 356667777888888888888888877752 235677778888888888999999888888753 24456778888888
Q ss_pred HHhcCCHHHHHHHHHhCCC-CC-ccchHH--HHHHHHHhcCChHHHHHHHHHHHHh
Q 012360 364 LSRAGLLYQAEEFIKIMPA-ED-KFISYK--ALLSACITYSEFDLGKKVANNMMKL 415 (465)
Q Consensus 364 ~~~~g~~~~A~~~~~~~~~-~~-~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~ 415 (465)
+...|++++|...+++... .| +...+. ..+..+...|++++|++.+.+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 8889999999988887643 23 334443 3334467788999999988887653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.2e-07 Score=75.93 Aligned_cols=153 Identities=10% Similarity=-0.032 Sum_probs=96.2
Q ss_pred hcCCHHHHHH---HHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHH
Q 012360 264 KCGSLEEALV---TFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER----KGIKPN-EATFVSVLAACRHSGLIT 335 (465)
Q Consensus 264 ~~~~~~~a~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~~~~~ 335 (465)
..|++++|.+ .+..-.......+..+...+...|++++|...+++..+ .+..|. ...+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455666665 44332222344566666667777777777777766554 121222 345667777788888888
Q ss_pred HHHHHHHHhhcCCCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CCc----cchHHHHHHHHHhcCCh
Q 012360 336 EGCQLFRRMGGVYRVQP-----TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA----EDK----FISYKALLSACITYSEF 402 (465)
Q Consensus 336 ~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~~~~ 402 (465)
+|...+++......-.+ ....+..+...+...|++++|...+++... .++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888887754211112 134566777788888888888888776532 111 23357778888889999
Q ss_pred HHHHHHHHHHHHhC
Q 012360 403 DLGKKVANNMMKLG 416 (465)
Q Consensus 403 ~~a~~~~~~~~~~~ 416 (465)
++|.+.++++++..
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998888754
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.62 E-value=2e-07 Score=70.79 Aligned_cols=112 Identities=7% Similarity=-0.130 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHH
Q 012360 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLS 394 (465)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 394 (465)
+...+..+...+...|++++|+..|+++... .+.+...+..+..++...|++++|...++.... +.+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4567777778888888888888888887753 234567777888888888888888888877643 335667888888
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCC-----CchhHHHHHHHH
Q 012360 395 ACITYSEFDLGKKVANNMMKLGNQ-----SHEAYVLLSNFY 430 (465)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~ 430 (465)
++...|++++|+..++++++..|+ +..+...+..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 888999999999999999988876 444444444433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.5e-07 Score=69.74 Aligned_cols=99 Identities=10% Similarity=0.040 Sum_probs=88.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCc----cchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHH
Q 012360 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDK----FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLL 426 (465)
Q Consensus 352 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 426 (465)
.+...+..+...+...|++++|.+.|++... .|+ ...|..+..++...|++++|+..++++++..|.++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 4567788899999999999999999998654 454 67788899999999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhc
Q 012360 427 SNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 427 ~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
+.++...|++++|...+++..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999887653
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.61 E-value=3.9e-07 Score=68.32 Aligned_cols=99 Identities=12% Similarity=0.007 Sum_probs=59.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-c---cchHHHHHH
Q 012360 323 SVLAACRHSGLITEGCQLFRRMGGVYRVQPTI---EHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-K---FISYKALLS 394 (465)
Q Consensus 323 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~---~~~~~~l~~ 394 (465)
.+...+...|++++|...|+++.+.. +.+. ..+..+..++...|++++|...++.+.. .| + ...+..++.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 44556666777777777777766421 1122 3555666666677777777766665533 22 2 344566666
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCchhH
Q 012360 395 ACITYSEFDLGKKVANNMMKLGNQSHEAY 423 (465)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 423 (465)
++...|++++|+..|+++++..|+++...
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 66667777777777777777666665533
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=2.4e-07 Score=69.46 Aligned_cols=99 Identities=9% Similarity=0.003 Sum_probs=88.4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 012360 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429 (465)
Q Consensus 352 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 429 (465)
.+...+..+...+...|++++|...+++... +.+...+..++..+...|++++|+..++++++..|+++..+..++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 3466778889999999999999999998653 33677888999999999999999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHHHHHHhc
Q 012360 430 YALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 430 ~~~~g~~~~a~~~~~~~~~~~ 450 (465)
+...|++++|...+++..+..
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999887653
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=3e-05 Score=67.87 Aligned_cols=228 Identities=13% Similarity=0.058 Sum_probs=128.5
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccch-hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-C-CHHHHH
Q 012360 196 KQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS-NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC-G-SLEEAL 272 (465)
Q Consensus 196 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~ 272 (465)
+..++|++++++++..+.. +..+++.--..+...+ .++++...++.+.... +-+..+|+.-..++... + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 3445566666666553211 2333333333333344 3666666666666544 33444555444444444 4 666777
Q ss_pred HHHhcCCCC---ChhhHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------H
Q 012360 273 VTFYKTDCK---DVVTWTTMIEGLANYGLGN--------EALRVFYQMERKGIKPNEATFVSVLAACRHSGL-------I 334 (465)
Q Consensus 273 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~-------~ 334 (465)
++++++.+. |..+|+--.-.+.+.+.++ ++++.++++.+.. .-|...|+.....+.+.+. +
T Consensus 146 ~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 146 EYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHH
Confidence 777666543 4445554444444444444 7888888888763 2366777777777766665 6
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCH--------------------HHHHHHHHhCCCC--------Ccc
Q 012360 335 TEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLL--------------------YQAEEFIKIMPAE--------DKF 386 (465)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~--------~~~ 386 (465)
+++++.++++.. ..+-|...|+.+-..+.+.|+. ....++...+... +.+
T Consensus 225 ~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 225 QDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 788888888774 2344677777777777766654 2333344444321 234
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHH-HhCCCCchhHHHHHH
Q 012360 387 ISYKALLSACITYSEFDLGKKVANNMM-KLGNQSHEAYVLLSN 428 (465)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~~ 428 (465)
..+..++..|...|+.++|.++++.+. +.+|.....|...+.
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 456667777777777777888887776 355666554444433
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.58 E-value=8.4e-08 Score=70.70 Aligned_cols=90 Identities=9% Similarity=0.045 Sum_probs=53.1
Q ss_pred cCCHHHHHHHHHHhhcCCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHH
Q 012360 331 SGLITEGCQLFRRMGGVYR--VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGK 406 (465)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~ 406 (465)
.|++++|+..|+++.+. + .+.+...+..+..+|...|++++|.+.|++... .| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46667777777777642 1 122345566666666666777777666666533 22 4555666666666666777777
Q ss_pred HHHHHHHHhCCCCch
Q 012360 407 KVANNMMKLGNQSHE 421 (465)
Q Consensus 407 ~~~~~~~~~~p~~~~ 421 (465)
..++++++..|+++.
T Consensus 82 ~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCcHH
Confidence 777666666666655
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.55 E-value=4e-07 Score=69.45 Aligned_cols=107 Identities=13% Similarity=0.036 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCC-CccchHHHHHHHHHh
Q 012360 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAE-DKFISYKALLSACIT 398 (465)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~ 398 (465)
.+......+.+.|++++|+..|+++.+- .|+...- +..... .+...|..+..++.+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~--------------------~a~~~~~~~a~a~~n~g~al~~ 69 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPE--------------------EAFDHAGFDAFCHAGLAEALAG 69 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTT--------------------SCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcch--------------------hhhhhccchHHHHHHHHHHHHH
Confidence 3445556666777777777777777632 2321000 000000 023378888888888
Q ss_pred cCChHHHHHHHHHHHHh-------CCCCchhH----HHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 399 YSEFDLGKKVANNMMKL-------GNQSHEAY----VLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 399 ~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
.|++++|+..+++++++ +|++...| +..+.++...|++++|+..|++..+.
T Consensus 70 Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 70 LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88888888888888888 89888888 89999999999999999988877653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.53 E-value=3.4e-07 Score=85.18 Aligned_cols=125 Identities=13% Similarity=0.032 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC----------------hhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT----------------IEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (465)
..+..+...+.+.|++++|+..|+++.+. .|+ ...|..+..+|.+.|++++|+..++++..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSW---LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34555566666666666666666666532 122 46788888889999999999998887654
Q ss_pred --CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHH-HHHHH
Q 012360 383 --EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAE-ARRNM 446 (465)
Q Consensus 383 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~ 446 (465)
+.+...|..+..+|...|++++|+..|++++++.|++..++..++.++.+.|+++++.+ .+++|
T Consensus 346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33677888899999999999999999999999999999999999999999999988764 44544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.51 E-value=5.3e-07 Score=67.55 Aligned_cols=109 Identities=4% Similarity=-0.039 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-c-------cchHH
Q 012360 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-K-------FISYK 390 (465)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~-------~~~~~ 390 (465)
.+..+...+...|++++|...++++... .+.+...+..+...+...|++++|...+++... .| + ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4445555566666666666666666532 223445555566666666666666666655432 11 1 45667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 012360 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431 (465)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 431 (465)
.++..+...|++++|.+.++++.+..| ++.....+..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 777788888888888888888888877 4555555555443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.6e-07 Score=87.73 Aligned_cols=119 Identities=5% Similarity=-0.045 Sum_probs=92.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCC
Q 012360 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSE 401 (465)
Q Consensus 324 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 401 (465)
+...+.+.|++++|++.++++.+. .+.+...+..+..+|.+.|++++|.+.+++... +.+...|..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 334556778888888888888753 233577788888888888888888888877643 3356778889999999999
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHH--HhhcCChHHHHHHHH
Q 012360 402 FDLGKKVANNMMKLGNQSHEAYVLLSNF--YALEGHWTEVAEARR 444 (465)
Q Consensus 402 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 444 (465)
+++|++.++++++..|++...+..++.+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999888888888 888899999999888
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.50 E-value=3.9e-07 Score=68.32 Aligned_cols=97 Identities=8% Similarity=0.069 Sum_probs=85.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC-------chhHH
Q 012360 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS-------HEAYV 424 (465)
Q Consensus 354 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~ 424 (465)
...+..+...+...|++++|...+++... +.+...+..++..+...|++++|+..++++++..|.+ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 45677888999999999999999988654 3366788899999999999999999999999988766 77899
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 425 LLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 425 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
.++.++...|++++|...+++..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999999999999887754
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.49 E-value=4.2e-07 Score=65.94 Aligned_cols=100 Identities=12% Similarity=-0.024 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CC--ccchHHHHHH
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--ED--KFISYKALLS 394 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~~l~~ 394 (465)
..+..+...+...|++++|...++++.+. .+.+...+..+..++...|++++|.+.+++... +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 44555566666666677776666666642 233455666666667777777777776665432 22 4556777777
Q ss_pred HHHhc-CChHHHHHHHHHHHHhCCCCc
Q 012360 395 ACITY-SEFDLGKKVANNMMKLGNQSH 420 (465)
Q Consensus 395 ~~~~~-~~~~~a~~~~~~~~~~~p~~~ 420 (465)
++... |++++|++.++++++..|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 77778 888888888888888777654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.49 E-value=5.1e-07 Score=70.85 Aligned_cols=103 Identities=12% Similarity=-0.028 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC----------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012360 318 EATFVSVLAACRHSGLITEGCQLFRRMGGVYR----------------VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (465)
...+......+.+.|++++|+..|.+...... .+.+...|..+..+|.+.|++++|...++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34566777888888888888888888774200 11123455566666666666666666666543
Q ss_pred C--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc
Q 012360 382 A--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420 (465)
Q Consensus 382 ~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 420 (465)
. +.+...|..++.++...|++++|+..|++++++.|+++
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 3 22455566666666666666666666666666666665
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=7.1e-05 Score=65.22 Aligned_cols=169 Identities=11% Similarity=-0.005 Sum_probs=92.2
Q ss_pred HHcCChh-HHHHHHHHHHHcCCCCCHH-HHHHHHHHhccchh----------hHhHHHHHHHHHHcCCCCChhHHHHHHH
Q 012360 193 VKAKQPE-EALELFKKMIDEGVTPDEE-VMVSVLSACSSLSN----------LQYGRLVHRFILQNNITQDAFVKTALID 260 (465)
Q Consensus 193 ~~~g~~~-~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 260 (465)
.+.|.++ +|+++++.++.. .|+.. .++.--..+...+. ++++..+++.+.... +-+..+|+.-..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3455544 678888888774 44433 33322222222222 566677777776654 345566665555
Q ss_pred HHHhcC--CHHHHHHHHhcCCC---CChhhHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---
Q 012360 261 MYSKCG--SLEEALVTFYKTDC---KDVVTWTTMIEGLANYGL-GNEALRVFYQMERKGIKPNEATFVSVLAACRHS--- 331 (465)
Q Consensus 261 ~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~--- 331 (465)
++...+ .+++++.+++++.+ .|..+|+--.-.+...|. ++++++.+.++.+.. +-|...|+.....+...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 555655 36777777766552 355566665555666666 477777777777653 22445554444443333
Q ss_pred -----------CCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhc
Q 012360 332 -----------GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA 367 (465)
Q Consensus 332 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 367 (465)
+.++++++.+.++... .+-|...|+.+-..+.+.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSS
T ss_pred cccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 3456666666666632 233455555444444433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.2e-06 Score=65.39 Aligned_cols=97 Identities=5% Similarity=-0.061 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-c-------cchHH
Q 012360 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-K-------FISYK 390 (465)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~-------~~~~~ 390 (465)
.+..+...+.+.|++++|+..|+++.+. .+.+...|..+..+|...|++++|++.+++... .| + ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 4445556666666666666666666532 123455566666666666666666666655432 11 1 12566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 012360 391 ALLSACITYSEFDLGKKVANNMMKLGNQ 418 (465)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 418 (465)
.++.++...|++++|++.|+++++..|+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 6778888889999999999999887775
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=0.00042 Score=60.68 Aligned_cols=66 Identities=9% Similarity=-0.073 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhccchh-------hHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 012360 200 EALELFKKMIDEGVTPDEEVMVSVLSACSSLSN-------LQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267 (465)
Q Consensus 200 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 267 (465)
++++.++++.+..+. |...|+.....+.+.+. ++++.+.++...... +-+...++.+-..+.+.|+
T Consensus 185 eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 185 SELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 566666666655332 44555544444444443 455566665555543 3345555555444444443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.9e-06 Score=64.45 Aligned_cols=93 Identities=11% Similarity=-0.016 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CCc-c---chHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC---chhHHHHHH
Q 012360 357 FVCLVDLLSRAGLLYQAEEFIKIMPA-EDK-F---ISYKALLSACITYSEFDLGKKVANNMMKLGNQS---HEAYVLLSN 428 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 428 (465)
+..+...+...|++++|.+.|+.+.. .|+ . ..+..++.++...|++++|+..++++++..|++ +.++..++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34456667778888888887776643 332 2 366677777778888888888888888877777 566777888
Q ss_pred HHhhcCChHHHHHHHHHHHHh
Q 012360 429 FYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 429 ~~~~~g~~~~a~~~~~~~~~~ 449 (465)
++...|++++|...++++.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888777654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.3e-06 Score=77.69 Aligned_cols=127 Identities=8% Similarity=-0.112 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 012360 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN----------------EATFVSVLAACRHSGLITEGCQLFRRMGGV 347 (465)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 347 (465)
..+..+...+.+.|++++|...|++..+. .|+ ...+..+..++.+.|++++|+..++++.+.
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555555666666666666666666554 222 366777777888888888888888888752
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 012360 348 YRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLG-KKVANNMMK 414 (465)
Q Consensus 348 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 414 (465)
.+.+...+..+..+|...|++++|...|+++.. .| +...+..+..++...|++++| ...+++|.+
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234667777788888888888888888877643 33 556777777778788888777 445666654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=4.8e-07 Score=66.94 Aligned_cols=98 Identities=8% Similarity=-0.129 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHh
Q 012360 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACIT 398 (465)
Q Consensus 321 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~ 398 (465)
+..+...+.+.|++++|+..|+++.+. .+.+...+..+..++...|++++|+..|++... .| +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344556666777777777777777742 233566677777777777777777777776543 33 55667777788888
Q ss_pred cCChHHHHHHHHHHHHhCCCCc
Q 012360 399 YSEFDLGKKVANNMMKLGNQSH 420 (465)
Q Consensus 399 ~~~~~~a~~~~~~~~~~~p~~~ 420 (465)
.|++++|+..++++++.+|.+.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8888888888888888777654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-07 Score=77.04 Aligned_cols=95 Identities=12% Similarity=-0.013 Sum_probs=74.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-c----------------cchHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 012360 356 HFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-K----------------FISYKALLSACITYSEFDLGKKVANNMMKLGN 417 (465)
Q Consensus 356 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 417 (465)
.+..+...+...|++++|...|++... .| + ...|..+..++...|++++|+..++++++..|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 344455555555666666655554321 11 1 26788899999999999999999999999999
Q ss_pred CCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 418 QSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 418 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
.++.++..++.+|...|++++|...+++..+..
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999887653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.6e-07 Score=83.60 Aligned_cols=147 Identities=9% Similarity=-0.054 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHH
Q 012360 284 VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL 363 (465)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 363 (465)
..+..+...+.+.|++++|...|++..+. .|+... +...++.+++...+ . ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHH
Confidence 34556666667777777777777776655 444331 12223333332211 1 1367778888
Q ss_pred HHhcCCHHHHHHHHHhCCC-C-CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH-hhcCChHHHH
Q 012360 364 LSRAGLLYQAEEFIKIMPA-E-DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY-ALEGHWTEVA 440 (465)
Q Consensus 364 ~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~ 440 (465)
|.+.|++++|...+++... . .+...|..+..+|...|++++|+..|++++++.|++..++..+.... ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888877643 3 35677888888888888888888888888888888888787777773 3456677777
Q ss_pred HHHHHHHHhc
Q 012360 441 EARRNMKELQ 450 (465)
Q Consensus 441 ~~~~~~~~~~ 450 (465)
..+++|....
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8888775543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.4e-07 Score=71.22 Aligned_cols=60 Identities=8% Similarity=0.113 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
.|..+..++.+.|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 344444444455555555555555555555554445555555555555555555444443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.1e-07 Score=68.45 Aligned_cols=84 Identities=19% Similarity=0.073 Sum_probs=63.6
Q ss_pred hcCCHHHHHHHHHhCCCC----C-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHH
Q 012360 366 RAGLLYQAEEFIKIMPAE----D-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVA 440 (465)
Q Consensus 366 ~~g~~~~A~~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 440 (465)
..|++++|+..|++.... | +...+..++.++...|++++|+..++++++..|+++.++..++.++...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 357788888888776543 3 45667888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHh
Q 012360 441 EARRNMKEL 449 (465)
Q Consensus 441 ~~~~~~~~~ 449 (465)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888877654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.2e-06 Score=68.29 Aligned_cols=130 Identities=12% Similarity=0.028 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----ccc
Q 012360 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT----IEHFVCLVDLLSRAGLLYQAEEFIKIMPA----ED----KFI 387 (465)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~ 387 (465)
++..+...+...|++++|+..+++..+...-.++ ..++..+...+...|++++|.+.+++... .+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555556666666666666666665532100111 13556667777777777777777765432 11 134
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhCC------CCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 388 SYKALLSACITYSEFDLGKKVANNMMKLGN------QSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
++..+...+...|++++|.+.++++++..+ .....+..++..+...|++++|.+.+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 567778888888999999999988887532 12346788899999999999999999877654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.44 E-value=8.6e-07 Score=76.65 Aligned_cols=112 Identities=6% Similarity=-0.153 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHH
Q 012360 317 NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLS 394 (465)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~ 394 (465)
+...+..+...+...|++++|+..|+++... .+.+...+..+..+|.+.|++++|...+++... .| +...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567778888999999999999999999853 234678888999999999999999999988655 33 6677888999
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 012360 395 ACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY 430 (465)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 430 (465)
++...|++++|+..|+++++.+|+++..+...+...
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 116 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA 116 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHH
Confidence 999999999999999999998887754444333333
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1e-06 Score=79.28 Aligned_cols=89 Identities=4% Similarity=-0.099 Sum_probs=77.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 012360 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY 430 (465)
Q Consensus 353 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 430 (465)
+...|..+..+|.+.|++++|.+.++++.. .| +...|..+..+|...|++++|+..|++++++.|++..++..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 456788888999999999999999987654 33 6678889999999999999999999999999999999999999999
Q ss_pred hhcCChHHHHH
Q 012360 431 ALEGHWTEVAE 441 (465)
Q Consensus 431 ~~~g~~~~a~~ 441 (465)
...++.+++.+
T Consensus 352 ~~~~~~~~a~k 362 (370)
T 1ihg_A 352 QKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988888765
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=5.3e-05 Score=66.04 Aligned_cols=217 Identities=9% Similarity=-0.046 Sum_probs=151.3
Q ss_pred chhh-HhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC----------HHHHHHHHhcCC---CCChhhHHHHHHHHHH
Q 012360 230 LSNL-QYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS----------LEEALVTFYKTD---CKDVVTWTTMIEGLAN 295 (465)
Q Consensus 230 ~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~---~~~~~~~~~l~~~~~~ 295 (465)
.|.+ ++|...+..+...+ +-+..+++.--.++...+. +++++.+++.+. +.+..+|+.-.-.+..
T Consensus 42 ~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 42 AGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 3443 47888888888765 3334455543333333332 577888887765 3467788877777777
Q ss_pred cC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhc-----
Q 012360 296 YG--LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGL-ITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA----- 367 (465)
Q Consensus 296 ~~--~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 367 (465)
.+ .+++++.++.++.+.. +-|...|+.-..++...|. ++++++.++++.+. .+-|...|+.....+.+.
T Consensus 121 l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 121 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC-
T ss_pred cCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhccc
Confidence 77 4899999999999873 3366777777777777787 58999999999863 345677777766666655
Q ss_pred ---------CCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhc-----------CChHHHHHHHHHHHHhCCCCchhHHH
Q 012360 368 ---------GLLYQAEEFIKIMPA-ED-KFISYKALLSACITY-----------SEFDLGKKVANNMMKLGNQSHEAYVL 425 (465)
Q Consensus 368 ---------g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~~~~~ 425 (465)
+.++++.+.+..... .| |...|+-+-..+.+. +.++++++.++++++..|++...+..
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~ 277 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLT 277 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHH
Confidence 457788888877643 34 777787665555544 45789999999999999998665544
Q ss_pred HHHH---HhhcCChHHHHHHHHHHHHhc
Q 012360 426 LSNF---YALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 426 l~~~---~~~~g~~~~a~~~~~~~~~~~ 450 (465)
++.. ....|..+++...+.++.+.+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 278 IILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 4432 224678888999999887643
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=4.9e-06 Score=76.96 Aligned_cols=163 Identities=4% Similarity=-0.143 Sum_probs=106.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhhcCC---CCC-CChhh
Q 012360 286 WTTMIEGLANYGLGNEALRVFYQMERKG-IKPNEA----TFVSVLAACRHSGLITEGCQLFRRMGGVY---RVQ-PTIEH 356 (465)
Q Consensus 286 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~-~~~~~ 356 (465)
+..++..|...|++++|.+.+..+.+.- ..++.. ..+.+...+...|+++.|..+++...... +.. ....+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556777777777777777777654421 011111 22223334445677888888777764310 111 22456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-------CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhC---CCC----ch
Q 012360 357 FVCLVDLLSRAGLLYQAEEFIKIMPA-------ED-KFISYKALLSACITYSEFDLGKKVANNMMKLG---NQS----HE 421 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~----~~ 421 (465)
+..+...|...|++++|..+++.+.. ++ ...++..++..|...|++++|..+++++.... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 67788888888888888888776522 11 23467788888888999999999998887743 322 23
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 422 AYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 422 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 567778888888999998887776643
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.41 E-value=4.8e-07 Score=69.02 Aligned_cols=111 Identities=5% Similarity=-0.175 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-------------HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 012360 285 TWTTMIEGLANYGLGNEALRVFYQMERKGIKPNE-------------ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQ 351 (465)
Q Consensus 285 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 351 (465)
.+......+.+.|++++|+..|++..+. .|+. ..|..+..++.+.|++++|+..+++..+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~----- 85 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH----- 85 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence 4556677788999999999999999886 4441 1444444444444555555444444432
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ccchH----HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHH
Q 012360 352 PTIEHFVCLVDLLSRAGLLYQAEEFIKIM-PAED-KFISY----KALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVL 425 (465)
Q Consensus 352 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 425 (465)
+|++. ..+| +...| .....++...|++++|+..|++++++.|.+...+..
T Consensus 86 ------------------------l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 86 ------------------------YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp ------------------------HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred ------------------------hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 01111 1133 45567 888999999999999999999999999988874443
Q ss_pred H
Q 012360 426 L 426 (465)
Q Consensus 426 l 426 (465)
+
T Consensus 142 ~ 142 (159)
T 2hr2_A 142 K 142 (159)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=3.7e-05 Score=73.19 Aligned_cols=168 Identities=9% Similarity=-0.052 Sum_probs=126.5
Q ss_pred HHHHHHHHhcCCC---CChhhHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--
Q 012360 268 LEEALVTFYKTDC---KDVVTWTTMIEGLANYGL----------GNEALRVFYQMERKGIKPNEATFVSVLAACRHSG-- 332 (465)
Q Consensus 268 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~-- 332 (465)
.++|++.++++.. .+..+|+.-...+...++ ++++++.++++.+.. +-+..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 3455666665542 244456655555555555 788999999888763 225667777777778888
Q ss_pred CHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhc----------
Q 012360 333 LITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG-LLYQAEEFIKIMPA-ED-KFISYKALLSACITY---------- 399 (465)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~---------- 399 (465)
+++++++.++++.+. .+-+...|+.-...+.+.| .++++.+.++++.. .| +...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 669999999999863 3456777877777788888 88899998888765 33 667787777776653
Q ss_pred ----CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHH
Q 012360 400 ----SEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTE 438 (465)
Q Consensus 400 ----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 438 (465)
+.++++++.+++++..+|.+..+|..+...+.+.+++++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988665
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.30 E-value=3.4e-06 Score=59.84 Aligned_cols=64 Identities=9% Similarity=0.058 Sum_probs=49.2
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 385 KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
+...+..+...+...|++++|+..|+++++.+|+++.+|..++.+|...|++++|...+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5556777777777788888888888888888887777788888888888888888877776654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.2e-06 Score=76.20 Aligned_cols=153 Identities=10% Similarity=-0.034 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 012360 252 AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHS 331 (465)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 331 (465)
...+..+...+.+.|++++|...|++....+.... .+...++.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 44577788888999999999999987553221111 1122233333332221 13677888899999
Q ss_pred CCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHH-HhcCChHHHHHH
Q 012360 332 GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSAC-ITYSEFDLGKKV 408 (465)
Q Consensus 332 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~-~~~~~~~~a~~~ 408 (465)
|++++|+..++++.+. .+.+...+..+..+|...|++++|...|++... .| +...+..+.... ...+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999853 244678889999999999999999999998865 34 555566665553 345678888999
Q ss_pred HHHHHHhCCCCch
Q 012360 409 ANNMMKLGNQSHE 421 (465)
Q Consensus 409 ~~~~~~~~p~~~~ 421 (465)
|+++.+..|.++.
T Consensus 322 ~~~~l~~~p~~~~ 334 (338)
T 2if4_A 322 YKGIFKGKDEGGA 334 (338)
T ss_dssp -------------
T ss_pred HHHhhCCCCCCCC
Confidence 9999998887653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.2e-06 Score=78.44 Aligned_cols=125 Identities=11% Similarity=0.026 Sum_probs=97.3
Q ss_pred HHHhcCCHHHHHHHHHHhhcCC--CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCc-cchHH
Q 012360 327 ACRHSGLITEGCQLFRRMGGVY--RVQP----TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA---------EDK-FISYK 390 (465)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~-~~~~~ 390 (465)
.+...|++++|+.++++..+.. -+.| ...+++.|..+|...|++++|..++++... .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3557899999998888775321 1122 356788899999999999999998876532 232 34689
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH-----hCCCCch---hHHHHHHHHhhcCChHHHHHHHHHHHHhcC
Q 012360 391 ALLSACITYSEFDLGKKVANNMMK-----LGNQSHE---AYVLLSNFYALEGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 451 (465)
.|...|...|++++|+.+++++++ +||+++. ....+..++...|++++|...++++++...
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999987 6788766 356788888899999999999999987543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=2e-07 Score=67.72 Aligned_cols=93 Identities=12% Similarity=0.053 Sum_probs=73.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC------chhHH
Q 012360 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQS------HEAYV 424 (465)
Q Consensus 353 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 424 (465)
+...+..+...+...|++++|.+.|++... +.+...|..+..++...|++++|++.++++++..|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 345667777788888888888888877543 3356778888889999999999999999999999988 66788
Q ss_pred HHHHHHhhcCChHHHHHHHHH
Q 012360 425 LLSNFYALEGHWTEVAEARRN 445 (465)
Q Consensus 425 ~l~~~~~~~g~~~~a~~~~~~ 445 (465)
.++.++...|++++|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888887777665543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.8e-06 Score=65.47 Aligned_cols=132 Identities=10% Similarity=-0.020 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC----Chh
Q 012360 285 TWTTMIEGLANYGLGNEALRVFYQMERKGI-KPN----EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP----TIE 355 (465)
Q Consensus 285 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~ 355 (465)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++......-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 445555666666666766666666543210 011 13566677777778888888888777653211111 144
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----ccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 356 HFVCLVDLLSRAGLLYQAEEFIKIMPA----ED----KFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 356 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
.+..+...+...|++++|.+.+++... .+ ...++..+...+...|++++|.+.++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 566777778888888888887776532 11 23457778888889999999999999988754
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.24 E-value=4e-06 Score=78.29 Aligned_cols=115 Identities=9% Similarity=-0.048 Sum_probs=63.9
Q ss_pred HHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 012360 260 DMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLIT 335 (465)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~ 335 (465)
..+.+.|++++|.+.|++.. +.+...|..+..+|.+.|++++|...+++..+. .| +...+..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 34455666666666666543 234556666666666666666666666666665 33 3455666666666666666
Q ss_pred HHHHHHHHhhcCCCCCCChhhHHHHHHH--HHhcCCHHHHHHHHH
Q 012360 336 EGCQLFRRMGGVYRVQPTIEHFVCLVDL--LSRAGLLYQAEEFIK 378 (465)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 378 (465)
+|++.++++.+. .+.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666666542 11223344444444 556666666666665
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.22 E-value=7.9e-05 Score=68.74 Aligned_cols=93 Identities=4% Similarity=-0.112 Sum_probs=50.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhc--------C-ChHHHHHHHHHHHHcCChhHHHHHHHHHHHc--CC-CC-C--H
Q 012360 153 SLNILINGYIDMELVDLAREVFDEIVD--------K-DIVLWRSMMHGCVKAKQPEEALELFKKMIDE--GV-TP-D--E 217 (465)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-~~-~--~ 217 (465)
++..+...+...|++++|..+++.... + ...++..++..|...|++++|...+++.... .+ .| . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 344455555555555555555554411 0 2345666667777777777777777665531 11 11 1 1
Q ss_pred HHHHHHHHHhccchhhHhHHHHHHHHHH
Q 012360 218 EVMVSVLSACSSLSNLQYGRLVHRFILQ 245 (465)
Q Consensus 218 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (465)
..+..+...+...++++.|...+.+..+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2344444556666777777666655543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.20 E-value=5.3e-06 Score=57.45 Aligned_cols=81 Identities=17% Similarity=0.148 Sum_probs=60.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 012360 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYA 431 (465)
Q Consensus 354 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 431 (465)
...+..+...+...|++++|...+++... +.+...+..+..++...|++++|+..++++++..|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 44566666777777777777777766533 2355667778888888888899999999988888888888888888876
Q ss_pred hcC
Q 012360 432 LEG 434 (465)
Q Consensus 432 ~~g 434 (465)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.18 E-value=4.7e-06 Score=60.89 Aligned_cols=80 Identities=6% Similarity=-0.079 Sum_probs=48.2
Q ss_pred HHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CccchHHHHHHHHHhcCChHHHHHHHHHHH
Q 012360 336 EGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-E-DKFISYKALLSACITYSEFDLGKKVANNMM 413 (465)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 413 (465)
.|+..|+++.+. .+.+...+..+...|...|++++|...+++... . .+...|..+..++...|++++|+..|++++
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455666666542 233455666666666666666666666665433 2 244556666666666666666666666666
Q ss_pred HhCC
Q 012360 414 KLGN 417 (465)
Q Consensus 414 ~~~p 417 (465)
+..|
T Consensus 81 ~~~~ 84 (115)
T 2kat_A 81 AAAQ 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 6654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.11 E-value=9.2e-06 Score=73.03 Aligned_cols=114 Identities=4% Similarity=-0.039 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHh
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACIT 398 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 398 (465)
..+..+...+.+.|++++|+..|+++.+. .+... .....+++.+ ....+..+|..+..++.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~~----------~~~~~~~~~~-----~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGSR----------AAAEDADGAK-----LQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHHH----------HHSCHHHHGG-----GHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcCc----------cccChHHHHH-----HHHHHHHHHHHHHHHHHh
Confidence 45666667777777777777777777631 11100 0001111100 001245678899999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 399 YSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 399 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
.|++++|+..++++++..|+++.++..++.+|...|++++|...+++..+..
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999887653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.11 E-value=1.2e-05 Score=74.72 Aligned_cols=116 Identities=7% Similarity=0.016 Sum_probs=94.4
Q ss_pred CCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-c---------------cchHHHHHH
Q 012360 332 GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-K---------------FISYKALLS 394 (465)
Q Consensus 332 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~---------------~~~~~~l~~ 394 (465)
+++++|...|+..... .+.....+..+...+.+.|++++|...|++... .| + ...|..+..
T Consensus 248 ~~~~~A~~~~~~~~~~--~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKE--KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEECCCCGGGSCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 4455555555443321 112355778889999999999999999998754 23 2 478889999
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 395 ACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...|++..+.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999988765
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=2.2e-06 Score=65.27 Aligned_cols=48 Identities=8% Similarity=0.047 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC-----------ChHHHHHHHHHHHHh
Q 012360 402 FDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG-----------HWTEVAEARRNMKEL 449 (465)
Q Consensus 402 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~ 449 (465)
+++|+..|+++++++|+...+|+.++.+|...| ++++|...|++..+.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 568888888888888888888888888888764 788888888877655
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=3.7e-05 Score=58.13 Aligned_cols=110 Identities=9% Similarity=-0.056 Sum_probs=56.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHh----cCCHHHH
Q 012360 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR----AGLLYQA 373 (465)
Q Consensus 298 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 373 (465)
++++|..+|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|...|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 4555666666655554 22222 444454555555566666655542 234444455555554 4555555
Q ss_pred HHHHHhCCCCCccchHHHHHHHHHh----cCChHHHHHHHHHHHHhC
Q 012360 374 EEFIKIMPAEDKFISYKALLSACIT----YSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 416 (465)
.++|++.....++..+..|...|.. .+++++|++.|+++.+.+
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555554444444455555555554 455555555555555543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.04 E-value=3e-05 Score=53.70 Aligned_cols=72 Identities=10% Similarity=0.001 Sum_probs=59.2
Q ss_pred CccchHHHHHHHHHhcCC---hHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCC
Q 012360 384 DKFISYKALLSACITYSE---FDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTRKKPG 456 (465)
Q Consensus 384 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 456 (465)
+++..+..+..++...++ .++|..+++++++.+|+++.....++..+.+.|++++|...|+++.+.... +|+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 356677777777765444 789999999999999999999999999999999999999999998876554 443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=8.2e-05 Score=56.19 Aligned_cols=113 Identities=5% Similarity=-0.077 Sum_probs=93.0
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHh----cCChHHHH
Q 012360 331 SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACIT----YSEFDLGK 406 (465)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 406 (465)
.+++++|+.+|++..+. + .|... |...|...+.+++|.++|++.....++..+..|...|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 35788999999998864 4 33333 777788888899999999988777888888999998887 78999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhh----cCChHHHHHHHHHHHHhcC
Q 012360 407 KVANNMMKLGNQSHEAYVLLSNFYAL----EGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 407 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 451 (465)
+.|+++.+.+ ++..+..|+..|.. .+++++|..++++..+.|.
T Consensus 82 ~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999998874 56678899999998 8999999999998877654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.95 E-value=3.8e-07 Score=81.06 Aligned_cols=261 Identities=13% Similarity=0.053 Sum_probs=144.9
Q ss_pred cchhhhHHHHHHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcc
Q 012360 17 DIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACAR 96 (465)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 96 (465)
.+.+|+.|..+..+.+++.+|++.|=+ ..|...|..++.+..+.|++++-+..+...++..- ++..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 455667777777777766666654432 34556666777777777777777776665554422 22333456666776
Q ss_pred hhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 012360 97 LEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDE 176 (465)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 176 (465)
.+++.+..+++. .|+..-...+.+-|...|.++.|.-+|..+. -|.-|...+.+.|++..|.+.-++
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is------N~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------NFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC------CCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc------cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666665544432 3444444556666666666666666665551 112222223333443333222111
Q ss_pred hhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHH
Q 012360 177 IVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKT 256 (465)
Q Consensus 177 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 256 (465)
..++.||-.+-.+|...+.+.-|.-.--.+.- .|| ....++..|-..|.+++-+.+++.-.... .....+|+
T Consensus 196 --Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFT 267 (624)
T 3lvg_A 196 --ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFT 267 (624)
T ss_dssp --CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHH
T ss_pred --cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHH
Confidence 12556777777777777777665443333221 111 12234555677777777777777665432 34566777
Q ss_pred HHHHHHHhcCCHHHHHHHHhc----CCCC-------ChhhHHHHHHHHHHcCChHHHH
Q 012360 257 ALIDMYSKCGSLEEALVTFYK----TDCK-------DVVTWTTMIEGLANYGLGNEAL 303 (465)
Q Consensus 257 ~l~~~~~~~~~~~~a~~~~~~----~~~~-------~~~~~~~l~~~~~~~~~~~~a~ 303 (465)
.|.-.|++- ++++..+.++- +.-| ....|..++-.|.+..+++.|.
T Consensus 268 ELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 268 ELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 777666654 44444444432 2212 4456777777787777777664
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=3.1e-05 Score=55.79 Aligned_cols=66 Identities=9% Similarity=0.040 Sum_probs=60.3
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 385 KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
+...|..+...+...|++++|++.++++++..|.++..+..++.++.+.|++++|...+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 345678888999999999999999999999999999999999999999999999999999887543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.92 E-value=2.3e-05 Score=57.06 Aligned_cols=64 Identities=11% Similarity=0.050 Sum_probs=41.1
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 385 KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
+...+..+...+...|++++|+..++++++..|.++..+..++.++...|++++|...+++..+
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666666666666666666666666666666665543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.87 E-value=6.7e-05 Score=51.65 Aligned_cols=66 Identities=21% Similarity=0.264 Sum_probs=60.5
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 385 KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
+...+..+...+...|++++|+..++++++..|.++..+..++.++...|++++|...+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 455778888999999999999999999999999999999999999999999999999999887653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=1.8e-05 Score=60.25 Aligned_cols=50 Identities=12% Similarity=0.081 Sum_probs=33.4
Q ss_pred HHHHHHHhCCC-CC-ccchHHHHHHHHHhc-----------CChHHHHHHHHHHHHhCCCCch
Q 012360 372 QAEEFIKIMPA-ED-KFISYKALLSACITY-----------SEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 372 ~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
+|+..|++... +| +...|..+..+|... |++++|++.|+++++++|++..
T Consensus 64 eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 64 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 55555544432 22 344455555555544 5899999999999999999865
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00025 Score=67.43 Aligned_cols=149 Identities=11% Similarity=0.002 Sum_probs=120.7
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC----------HHHHHHHHHHhhcCCCCCCChhhHHHHHHHHH
Q 012360 297 GLGNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGL----------ITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLS 365 (465)
Q Consensus 297 ~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 365 (465)
...++|++.++++.+. .|+ ...|+.--.++...|+ +++++..++++.+. .+.+..+|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3456789999999987 554 4566665566666666 89999999999963 3557778888788888
Q ss_pred hcC--CHHHHHHHHHhCCC--CCccchHHHHHHHHHhcC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhc-------
Q 012360 366 RAG--LLYQAEEFIKIMPA--EDKFISYKALLSACITYS-EFDLGKKVANNMMKLGNQSHEAYVLLSNFYALE------- 433 (465)
Q Consensus 366 ~~g--~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 433 (465)
+.| +++++.+.++++.. ..+..+|+.-...+.+.| .++++++.++++++.+|.+..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 67999999998865 347788888888888888 899999999999999999999999999998874
Q ss_pred -------CChHHHHHHHHHHHHh
Q 012360 434 -------GHWTEVAEARRNMKEL 449 (465)
Q Consensus 434 -------g~~~~a~~~~~~~~~~ 449 (465)
+.++++.+++++....
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhh
Confidence 5578888888877654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.77 E-value=3.5e-05 Score=54.30 Aligned_cols=80 Identities=10% Similarity=0.010 Sum_probs=58.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CC-ccc-hHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCh
Q 012360 360 LVDLLSRAGLLYQAEEFIKIMPA-ED-KFI-SYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHW 436 (465)
Q Consensus 360 l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 436 (465)
....+.+.|++++|.+.++++.. .| +.. .+..+..++...|++++|++.|+++++.+|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 45567778888888888877643 33 456 77888888888999999999999999999888876532 455
Q ss_pred HHHHHHHHHHH
Q 012360 437 TEVAEARRNMK 447 (465)
Q Consensus 437 ~~a~~~~~~~~ 447 (465)
.++...+++..
T Consensus 78 ~~a~~~~~~~~ 88 (99)
T 2kc7_A 78 MDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHHHHHHh
Confidence 55666665443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00022 Score=66.22 Aligned_cols=118 Identities=12% Similarity=0.014 Sum_probs=71.7
Q ss_pred HHHhCCChHHHHHHHHhh---------CCCCC-chhHHHHHHHHHhcCChHHHHHHHHHhhc----------C-ChHHHH
Q 012360 128 MYAKCKEMDEALRLFDEM---------GSRRN-IVSLNILINGYIDMELVDLAREVFDEIVD----------K-DIVLWR 186 (465)
Q Consensus 128 ~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~-~~~~~~ 186 (465)
.+...|++++|+.++++. ...|+ ..+++.|...|...|++++|+.++++... | ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678888888777665 11222 23567777777777777777777766522 1 234577
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHH-----cCCC-CC-HHHHHHHHHHhccchhhHhHHHHHHHHHH
Q 012360 187 SMMHGCVKAKQPEEALELFKKMID-----EGVT-PD-EEVMVSVLSACSSLSNLQYGRLVHRFILQ 245 (465)
Q Consensus 187 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (465)
.|...|...|++++|..++++.++ .|.. |+ ..+...+-.++...+.+++|...+..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777776653 1221 11 12333444455566666777766666654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00022 Score=49.98 Aligned_cols=61 Identities=16% Similarity=0.330 Sum_probs=55.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCch-hHHHHHHHHhhcCChHHHHHHHHHHHHhcC
Q 012360 391 ALLSACITYSEFDLGKKVANNMMKLGNQSHE-AYVLLSNFYALEGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 451 (465)
..+..+...|++++|+..++++++..|.++. .+..++.++...|++++|...+++..+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3566778899999999999999999999999 999999999999999999999998876643
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00015 Score=51.13 Aligned_cols=65 Identities=9% Similarity=-0.055 Sum_probs=44.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 012360 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-E-DKFISYKALLSACITYSEFDLGKKVANNMMKLGN 417 (465)
Q Consensus 353 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 417 (465)
+...+..+..+|...|++++|.+.|++... . .+...|..+..+|...|++++|++.+++++++.|
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 455666677777777777777777766543 2 2556677777777777777777777777777654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0002 Score=65.38 Aligned_cols=82 Identities=10% Similarity=0.075 Sum_probs=61.6
Q ss_pred cCCHHHHHHHHHhCCC---------CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHH-----hCCCCch---hHHHHHH
Q 012360 367 AGLLYQAEEFIKIMPA---------ED-KFISYKALLSACITYSEFDLGKKVANNMMK-----LGNQSHE---AYVLLSN 428 (465)
Q Consensus 367 ~g~~~~A~~~~~~~~~---------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~ 428 (465)
.|++++|..++++... .| -..+++.++.+|...|++++|+.+++++++ .||+++. .++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4566777776654321 22 224688888899999999999999999887 4566555 6888999
Q ss_pred HHhhcCChHHHHHHHHHHHH
Q 012360 429 FYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 429 ~~~~~g~~~~a~~~~~~~~~ 448 (465)
.|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999987754
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00037 Score=63.69 Aligned_cols=88 Identities=10% Similarity=0.121 Sum_probs=61.1
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC------CC----ccchHHHHHHHHHhcCChHHHHHHHHHHHH-----hCCCCch---h
Q 012360 361 VDLLSRAGLLYQAEEFIKIMPA------ED----KFISYKALLSACITYSEFDLGKKVANNMMK-----LGNQSHE---A 422 (465)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~~------~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~ 422 (465)
+..+.+.|++++|..++++... .+ -..+++.++..|...|++++|+.+++++++ .+|+++. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3445566777777777665422 11 124577788888888888888888888876 4455544 5
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 423 YVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 423 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
++.|+..|..+|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77888888888888888888887653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0023 Score=56.04 Aligned_cols=139 Identities=8% Similarity=-0.079 Sum_probs=77.1
Q ss_pred CChhhHHHHHHHHH--HcC---ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh---cC-----CHHHHHHHHHHhhc
Q 012360 281 KDVVTWTTMIEGLA--NYG---LGNEALRVFYQMERKGIKPN-EATFVSVLAACRH---SG-----LITEGCQLFRRMGG 346 (465)
Q Consensus 281 ~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~---~~-----~~~~a~~~~~~~~~ 346 (465)
.+...|...+.+.. ..+ ...+|..+|++..+. .|+ ...+..+..+|.. .+ ........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 45666666665533 222 346788888888877 665 3444444444321 00 01111112222111
Q ss_pred CCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 347 VYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 347 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
....+.+..++..+...+...|++++|...++++.. +|+...|..+...+.-.|++++|.+.++++..++|..++
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 112244566666666556666777777777766543 455555556666666777777777777777777776653
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00093 Score=60.94 Aligned_cols=93 Identities=8% Similarity=-0.059 Sum_probs=71.3
Q ss_pred hcCCHHHHHHHHHHhhcCC--CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCc-cchHHHHH
Q 012360 330 HSGLITEGCQLFRRMGGVY--RVQP----TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA---------EDK-FISYKALL 393 (465)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~-~~~~~~l~ 393 (465)
..|++++|+.++++..+.. -+.| ...+++.|..+|...|++++|+.++++... .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578888888888765321 1222 256788899999999999999998887532 332 34589999
Q ss_pred HHHHhcCChHHHHHHHHHHHH-----hCCCCchh
Q 012360 394 SACITYSEFDLGKKVANNMMK-----LGNQSHEA 422 (465)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~ 422 (465)
..|...|++++|+.+++++++ +||+++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999987 67888763
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0016 Score=59.41 Aligned_cols=99 Identities=10% Similarity=0.008 Sum_probs=76.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCC--CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCc-cch
Q 012360 325 LAACRHSGLITEGCQLFRRMGGVY--RVQP----TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA---------EDK-FIS 388 (465)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~-~~~ 388 (465)
+..+...|++++|+.++++..+.. -+.| ...+++.|..+|...|++++|+.+++++.. .|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455667889999999999886431 1222 256788899999999999999999886532 232 345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH-----hCCCCchhH
Q 012360 389 YKALLSACITYSEFDLGKKVANNMMK-----LGNQSHEAY 423 (465)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~ 423 (465)
++.|...|...|++++|+.+++++++ +||+++.+-
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 88999999999999999999999987 678888743
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0017 Score=45.99 Aligned_cols=73 Identities=16% Similarity=0.132 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHH
Q 012360 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPA---------EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424 (465)
Q Consensus 354 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 424 (465)
..-+..|...+.+.|+++.|...++.... .+....+..+..++.+.|+++.|+..++++.+..|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 33444555666666666666666554321 124566888999999999999999999999999999987654
Q ss_pred HH
Q 012360 425 LL 426 (465)
Q Consensus 425 ~l 426 (465)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 44
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0017 Score=54.51 Aligned_cols=87 Identities=7% Similarity=0.037 Sum_probs=57.9
Q ss_pred HHHHHHHHhCCC-CC---ccchHHHHHHHHHh-----cCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHhhc-CChHHH
Q 012360 371 YQAEEFIKIMPA-ED---KFISYKALLSACIT-----YSEFDLGKKVANNMMKLGNQS-HEAYVLLSNFYALE-GHWTEV 439 (465)
Q Consensus 371 ~~A~~~~~~~~~-~~---~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~a 439 (465)
..|...+++..+ .| +...|..++..|.. -|+.++|.++|+++++++|+. ..++..++..+++. |++++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 344444444432 33 24456666666666 378888888888888888764 77777888877774 778888
Q ss_pred HHHHHHHHHhcCCCCCCC
Q 012360 440 AEARRNMKELQTRKKPGN 457 (465)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~ 457 (465)
.+++++.........|+.
T Consensus 260 ~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 260 DEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHcCCCCCCCCh
Confidence 888887777666654553
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0023 Score=44.04 Aligned_cols=71 Identities=6% Similarity=-0.049 Sum_probs=52.2
Q ss_pred CCChhhHHHHHHHHHhcCC---HHHHHHHHHhCCC-C-CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 351 QPTIEHFVCLVDLLSRAGL---LYQAEEFIKIMPA-E-DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 351 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
+.+...+..+..++...++ .++|..++++... . .++..+..++..+...|++++|+..|+++.+..|+++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 4566677777777765444 6788888877644 3 36677777888888889999999999998888877443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.013 Score=51.44 Aligned_cols=72 Identities=8% Similarity=0.042 Sum_probs=50.5
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhH
Q 012360 281 KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHF 357 (465)
Q Consensus 281 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 357 (465)
.++..|.++...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.++++. .+.|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al---rL~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF---NLRPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHSCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCcChH
Confidence 456667666666666678888888888777763 666666666677777788888888887777 335665554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.17 Score=48.23 Aligned_cols=114 Identities=10% Similarity=-0.029 Sum_probs=72.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHH
Q 012360 297 GLGNEALRVFYQMERKGIKPNEATF----VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372 (465)
Q Consensus 297 ~~~~~a~~~~~~m~~~g~~p~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 372 (465)
.+.+.|...+....+.+ ..+.... ..+.......+...++...+...... .++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 47899999998886543 2233322 23333334445356677777765532 2444344445555567899999
Q ss_pred HHHHHHhCCCCC-ccch-HHHHHHHHHhcCChHHHHHHHHHHHH
Q 012360 373 AEEFIKIMPAED-KFIS-YKALLSACITYSEFDLGKKVANNMMK 414 (465)
Q Consensus 373 A~~~~~~~~~~~-~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (465)
|...|+.|...+ +..- .-=+.+++...|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999997643 2221 12244566788999999999999875
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0014 Score=49.21 Aligned_cols=88 Identities=8% Similarity=-0.027 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHhCCC-C-C--ccchHHHHHHHHHhcCChHH
Q 012360 332 GLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAG---LLYQAEEFIKIMPA-E-D--KFISYKALLSACITYSEFDL 404 (465)
Q Consensus 332 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~-~--~~~~~~~l~~~~~~~~~~~~ 404 (465)
+....+.+.|.+..+. + +++..+...+..++++.+ +.+++..+++.+.. . | +...+..+.-++.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 3456677777776653 3 478888888888999988 56688888887654 2 3 35566777788899999999
Q ss_pred HHHHHHHHHHhCCCCch
Q 012360 405 GKKVANNMMKLGNQSHE 421 (465)
Q Consensus 405 a~~~~~~~~~~~p~~~~ 421 (465)
|.+.++.+++..|++..
T Consensus 90 A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhcCCCCHH
Confidence 99999999999998865
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.17 Score=50.70 Aligned_cols=127 Identities=15% Similarity=0.157 Sum_probs=76.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHH
Q 012360 123 NALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEAL 202 (465)
Q Consensus 123 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 202 (465)
..++..+.+.|..+.|.++.+.- ..-.......|++++|.++.+.+ .+...|..+...+.+.|+++.|.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~---------~~~f~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~ 701 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ---------DQKFELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAI 701 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH---------HHHHHHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc---------chheehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHH
Confidence 55666667777777777664321 11133456678888887776555 34567888888888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 012360 203 ELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF 275 (465)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 275 (465)
+.|..+.+ |..+...+...++.+....+.+.....|. ++....+|.+.|++++|.+++
T Consensus 702 ~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 702 EAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 88887643 33344444445565555555444444331 222334455566666665544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.073 Score=53.28 Aligned_cols=99 Identities=10% Similarity=-0.025 Sum_probs=49.9
Q ss_pred HHHccCChHHHHH-HhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhH
Q 012360 27 FYGRMALFTDARV-LFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKT 105 (465)
Q Consensus 27 ~~~~~~~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 105 (465)
.....+++++|.+ ++..++.+ .....++..+.+.|.++.|+++.+.-. .-+......|+++.|.+
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~~~--~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVEGK--DSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARD 673 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCCCH--HHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHH
T ss_pred HHHHhCCHHHHHHHHHhcCCch--HHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHH
Confidence 3344666777766 55443301 122555566666666666665542110 00122334556665555
Q ss_pred HHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh
Q 012360 106 VHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145 (465)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 145 (465)
+.+.+ .+...|..+...+.+.|+++.|.+.|.++
T Consensus 674 ~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 674 LLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 53321 23445566666666666666666665555
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0072 Score=45.40 Aligned_cols=78 Identities=13% Similarity=0.016 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhcCCCCCC--ChhhHHHHHHHHHhcCCHHHHHH
Q 012360 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSG---LITEGCQLFRRMGGVYRVQP--TIEHFVCLVDLLSRAGLLYQAEE 375 (465)
Q Consensus 301 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 375 (465)
.+.+.|.+..+.| .++..+...+..++++.+ +.++++.+++...+. . .| ....+..|.-++.+.|++++|.+
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3444444444433 244444445555555554 344555555555542 1 12 23344444555555555555555
Q ss_pred HHHhCC
Q 012360 376 FIKIMP 381 (465)
Q Consensus 376 ~~~~~~ 381 (465)
.++.+.
T Consensus 93 y~~~lL 98 (152)
T 1pc2_A 93 YVRGLL 98 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.035 Score=42.86 Aligned_cols=105 Identities=12% Similarity=0.031 Sum_probs=69.8
Q ss_pred HHHHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhh
Q 012360 25 IHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGK 104 (465)
Q Consensus 25 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 104 (465)
.......|+++.|.++.+.+ .+...|..|.....++|+++-|.+.|.+... +..+.-.|...|+.+...
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 45566788888888887766 4566888888888888888888888887543 334444455566666555
Q ss_pred HHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhC
Q 012360 105 TVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMG 146 (465)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 146 (465)
++-+.....| -++.....+.-.|+++++.++|.+.+
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 5544444433 13444555566677777777776653
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0092 Score=42.06 Aligned_cols=62 Identities=11% Similarity=0.015 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhC-------CCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 388 SYKALLSACITYSEFDLGKKVANNMMKLG-------NQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
-...++..+...|+++.|+..|+++++.. +..+.++..|+.++.+.|++++|..++++..+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 35578888999999999999999999853 344567999999999999999999999988764
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.57 E-value=0.42 Score=47.51 Aligned_cols=25 Identities=8% Similarity=-0.003 Sum_probs=13.6
Q ss_pred HHHHHHHhcchhhhhhhhHHHHHHH
Q 012360 87 LVILFSACARLEKLHYGKTVHCYAT 111 (465)
Q Consensus 87 ~~~l~~~~~~~~~~~~a~~~~~~~~ 111 (465)
|..++++..+.++.+.+.++|..+.
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444555555555555555555554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.31 Score=37.60 Aligned_cols=100 Identities=8% Similarity=0.062 Sum_probs=54.2
Q ss_pred HHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHH
Q 012360 161 YIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVH 240 (465)
Q Consensus 161 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 240 (465)
..+.|+++.|.++.+.+ .+...|..|.......|+++-|...|....+ +..+.-.|...|+.++-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34556666666655544 3556677777777777777777777766542 333333444455555544444
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhc
Q 012360 241 RFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYK 277 (465)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 277 (465)
+.....| -++....++...|+++++.++|.+
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444333 122333444445666666555543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.00084 Score=60.24 Aligned_cols=234 Identities=12% Similarity=0.042 Sum_probs=155.8
Q ss_pred CcchhhhHHHHHHHccCChHHHHHHhccCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 012360 16 SDIYVGNSLIHFYGRMALFTDARVLFDKMPF--RDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSA 93 (465)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 93 (465)
-|+..|..++....+.|.+++-+..+.-.++ ++...=+.|+-+|++.++..+-.+++. .|+..-...+.+-
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDr 153 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDR 153 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHH
Confidence 4788999999999999999999999887763 356667899999999999876554442 4777777888888
Q ss_pred hcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHH
Q 012360 94 CARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREV 173 (465)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 173 (465)
|...|.++.|.-+|..+ .-|..|..++.+.|++..|.+.-++ ..++.||-.+..+|...+.+.-|.-.
T Consensus 154 cf~e~lYeAAKilys~i---------sN~akLAstLV~L~~yq~AVdaArK---Ans~ktWKeV~~ACvd~~EfrLAqic 221 (624)
T 3lvg_A 154 CYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK---ANSTRTWKEVCFACVDGKEFRLAQMC 221 (624)
T ss_dssp HHHSCCSTTSSTTGGGS---------CCCTTTSSSSSSCSGGGSSTTTTTT---CCSSCSHHHHTHHHHHSCTTTTTTHH
T ss_pred HHHccCHHHHHHHHHhC---------ccHHHHHHHHHHHHHHHHHHHHHHh---cCChhHHHHHHHHHhCchHHHHHHHh
Confidence 88889988888776543 2344566666777887777666544 34677888888888888877766543
Q ss_pred HHHh-hcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHc-CCCC-
Q 012360 174 FDEI-VDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQN-NITQ- 250 (465)
Q Consensus 174 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~- 250 (465)
--.+ +.++ -...++..|-..|.+++-+.+++..... -+.....|+-|.-.|++- ++++..+.++....+ +++-
T Consensus 222 GLniIvhad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKv 297 (624)
T 3lvg_A 222 GLHIVVHAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKV 297 (624)
T ss_dssp HHHHHCCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTT
T ss_pred cchhcccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHH
Confidence 2222 2221 1223455677788888888887776632 234566677666666554 334444333332221 2211
Q ss_pred -----ChhHHHHHHHHHHhcCCHHHHH
Q 012360 251 -----DAFVKTALIDMYSKCGSLEEAL 272 (465)
Q Consensus 251 -----~~~~~~~l~~~~~~~~~~~~a~ 272 (465)
....|..++-.|..-.+++.|.
T Consensus 298 iracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 298 LRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 2345667777777777777664
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.27 Score=35.63 Aligned_cols=141 Identities=11% Similarity=0.069 Sum_probs=96.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHH
Q 012360 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372 (465)
Q Consensus 293 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 372 (465)
+.-.|..++..++..+.... .+..-|+.+|--....-+-+-..+.++.+-+-+.+.+ +|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~--------------C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHh--------------hhcHHH
Confidence 34467788888888877654 2556677777666666677777777777765433322 333333
Q ss_pred HHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCC
Q 012360 373 AEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTR 452 (465)
Q Consensus 373 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 452 (465)
....+-.+. .+....+..+..+...|+-|.-.+++.......|.++.....++.+|.+.|+..+|.+++++.=+.|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 333333332 234456667777788888888888888877777778888889999999999999999999888777763
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.53 Score=39.65 Aligned_cols=90 Identities=14% Similarity=0.061 Sum_probs=60.5
Q ss_pred hHHHHHHHHHhhc--CC---hHHHHHHHHHHHHc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc-chhhHh
Q 012360 167 VDLAREVFDEIVD--KD---IVLWRSMMHGCVKA-----KQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS-LSNLQY 235 (465)
Q Consensus 167 ~~~a~~~~~~~~~--~~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~ 235 (465)
...|...+++..+ |+ ...|..+...|.+. |+.++|.+.|++.++.+..-+..++......++. .|+.+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 4556666666633 33 45778888888874 8888888888888885332235666666777776 488888
Q ss_pred HHHHHHHHHHcCCC--CChhHHH
Q 012360 236 GRLVHRFILQNNIT--QDAFVKT 256 (465)
Q Consensus 236 a~~~~~~~~~~~~~--~~~~~~~ 256 (465)
+...+++....... |+....+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHH
Confidence 88888888886655 5544333
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.074 Score=39.42 Aligned_cols=111 Identities=9% Similarity=0.056 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHhhcCCCCCCChh-hHHHHHH------HHHhcCCHHHHHHHHHhCCC-
Q 012360 317 NEATFVSVLAACRHSGLI------TEGCQLFRRMGGVYRVQPTIE-HFVCLVD------LLSRAGLLYQAEEFIKIMPA- 382 (465)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~- 382 (465)
|..++-..+....+.|++ ++.+++|+++.. .++|+.. .+...+. .+...++.++|.++|+.+..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344555555555555665 666667776664 4555421 1111111 12334677777777776632
Q ss_pred -CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 012360 383 -EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429 (465)
Q Consensus 383 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 429 (465)
+.=...|-.....-.+.|+.+.|.+++.+++..+|.+...+...+.-
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~n 137 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRN 137 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHh
Confidence 11244566666666788888888888888888888877655544443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.1 Score=37.65 Aligned_cols=87 Identities=8% Similarity=-0.031 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHH---HHHHHHhCCCC--C--ccchHHHHHHHHHhcCChHHH
Q 012360 333 LITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ---AEEFIKIMPAE--D--KFISYKALLSACITYSEFDLG 405 (465)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a 405 (465)
....+.+.|.+.... + .++..+-..+..++.+..+... ++.+++.+... | .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344444555544432 2 2666666666677777666555 66666665543 2 233455566778889999999
Q ss_pred HHHHHHHHHhCCCCch
Q 012360 406 KKVANNMMKLGNQSHE 421 (465)
Q Consensus 406 ~~~~~~~~~~~p~~~~ 421 (465)
.+.++.+++..|.+..
T Consensus 94 ~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhCCCCHH
Confidence 9999999999998866
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.057 Score=40.02 Aligned_cols=102 Identities=8% Similarity=-0.027 Sum_probs=72.5
Q ss_pred CCChhhHHHHHHHHHhcCCH------HHHHHHHHhCCC--CCc-cchHHHHHH------HHHhcCChHHHHHHHHHHHHh
Q 012360 351 QPTIEHFVCLVDLLSRAGLL------YQAEEFIKIMPA--EDK-FISYKALLS------ACITYSEFDLGKKVANNMMKL 415 (465)
Q Consensus 351 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~--~~~-~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~ 415 (465)
+.|.++|-..+....+.|++ ++.+++|++... +|+ ...|...+. .+...+|.++|.++|+.+++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34667777777777777887 777777776533 232 112222111 123458999999999999987
Q ss_pred CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCC
Q 012360 416 GNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTR 452 (465)
Q Consensus 416 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 452 (465)
...-+.+|...+..-.++|+...|++++.+....+.+
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 6555778888999999999999999999987765543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.029 Score=40.46 Aligned_cols=84 Identities=10% Similarity=-0.020 Sum_probs=63.2
Q ss_pred cCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHH---HHHHHHHHHHhC-C-CCchhHHHHHHHHhhcCChHHH
Q 012360 367 AGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDL---GKKVANNMMKLG-N-QSHEAYVLLSNFYALEGHWTEV 439 (465)
Q Consensus 367 ~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a 439 (465)
......+.+.+.+... .++..+-..+.+++.+..+... ++.+++...+.+ | ......+.|+.++.+.|+|++|
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3344455555544322 4566777778889988887666 899999988877 5 4566789999999999999999
Q ss_pred HHHHHHHHHhc
Q 012360 440 AEARRNMKELQ 450 (465)
Q Consensus 440 ~~~~~~~~~~~ 450 (465)
+++++.+.+..
T Consensus 94 ~~~~~~lL~~e 104 (126)
T 1nzn_A 94 LKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999887653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.09 Score=51.11 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=51.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 393 LSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
...+...|+++.|+++.++++...|.+..+|..|+.+|...|+|+.|+-.++-+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4556788999999999999999999999999999999999999999999999874
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.057 Score=48.56 Aligned_cols=68 Identities=16% Similarity=0.070 Sum_probs=57.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH-----HhcCCCCCC
Q 012360 389 YKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK-----ELQTRKKPG 456 (465)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~ 456 (465)
...++..+...|++++++..+..++...|-+...+..++.++.+.|+..+|++.|+++. +.|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 44566777889999999999999999999999899999999999999999999988765 468877664
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.16 E-value=1.9 Score=39.46 Aligned_cols=246 Identities=10% Similarity=0.031 Sum_probs=137.4
Q ss_pred CChHHHHHHhccCC-----CC----CcccHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCchhhHHHHHHHhcc----h
Q 012360 32 ALFTDARVLFDKMP-----FR----DVGSWNTLMSIYNDFSDSGEVLILFKQLIFE-GIVADKITLVILFSACAR----L 97 (465)
Q Consensus 32 ~~~~~A~~~~~~~~-----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~----~ 97 (465)
|+++.|++.+-.+. .. .......++..|...|+++...+.+..+... |..+.. ...+++.+.. .
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 66777877664432 11 2334667888899999999988887766543 322222 2334433321 1
Q ss_pred hhhhhhhHHHHHHHHh------C-Ccc---chhhHHHHHHHHHhCCChHHHHHHHHhh-----CCCCC---chhHHHHHH
Q 012360 98 EKLHYGKTVHCYATKV------G-LEY---MLNMENALLLMYAKCKEMDEALRLFDEM-----GSRRN---IVSLNILIN 159 (465)
Q Consensus 98 ~~~~~a~~~~~~~~~~------~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~---~~~~~~l~~ 159 (465)
...+. +........ | +-. .......|...+...|++.+|..++..+ +..+. ...+..-++
T Consensus 108 ~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 11111 111111111 1 111 1233456788899999999999999988 22221 235666778
Q ss_pred HHHhcCChHHHHHHHHHhhc------CC----hHHHHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCCHHHHHHH----H
Q 012360 160 GYIDMELVDLAREVFDEIVD------KD----IVLWRSMMHGCVKAKQPEEALELFKKMIDE-GVTPDEEVMVSV----L 224 (465)
Q Consensus 160 ~~~~~~~~~~a~~~~~~~~~------~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l----l 224 (465)
.|...+++..|..+++++.. ++ ...+...+..+...+++.+|...|.+..+. ....|...+..+ +
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v 265 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIV 265 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 88999999999988887622 11 234666777788889999988888777542 111122222111 1
Q ss_pred HHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhc--CCHHHHHHHHhcCCCC
Q 012360 225 SACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKC--GSLEEALVTFYKTDCK 281 (465)
Q Consensus 225 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~ 281 (465)
....-.+..+.-..++........-++...+..++.+|... .+++...+.|.....+
T Consensus 266 ~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 266 YFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNE 324 (445)
T ss_dssp HHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTT
T ss_pred HHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcc
Confidence 11111111111222222222222234566778888888764 4677888888765544
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=95.05 E-value=1.5 Score=37.82 Aligned_cols=167 Identities=11% Similarity=0.065 Sum_probs=85.4
Q ss_pred hhhHHHHHHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHH----HHHHHcCCCCchhhHHHHHHHhc
Q 012360 20 VGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILF----KQLIFEGIVADKITLVILFSACA 95 (465)
Q Consensus 20 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~~~~~~~~~~~~l~~~~~ 95 (465)
+|.++..-|.+.+++++|++++-. -...+.+.|+...|-++- +-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344444445555555555544322 233455666666555444 44455677777777777777665
Q ss_pred chhhhh-----hhhHHHHHHHHhC--CccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChH
Q 012360 96 RLEKLH-----YGKTVHCYATKVG--LEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVD 168 (465)
Q Consensus 96 ~~~~~~-----~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 168 (465)
....-+ -..+.+.+..+.| ..-+......+...|.+.+++.+|...|= .+..++...+..++.-+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCc
Confidence 543211 1222223333333 22345566677777777888888777763 343444456655554444433311
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 012360 169 LAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMI 209 (465)
Q Consensus 169 ~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 209 (465)
++ +...-. .+--|...++...|..+++...
T Consensus 185 e~----------dlfiaR-aVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 185 TA----------PLYCAR-AVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp GH----------HHHHHH-HHHHHHHTTCHHHHHHHHHHHH
T ss_pred cH----------HHHHHH-HHHHHHHhCCHHHHHHHHHHHH
Confidence 11 111112 2233555667777766665544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.74 Score=33.45 Aligned_cols=139 Identities=9% Similarity=-0.019 Sum_probs=90.3
Q ss_pred chhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 012360 96 RLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175 (465)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 175 (465)
..|..++..++..+..+.. +..-+|.+|.-....-+=+-..++++.+|.--|.. .+|++......+-
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis----------~C~NlKrVi~C~~ 85 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD----------KCQNLKSVVECGV 85 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG----------GCSCTHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcH----------hhhcHHHHHHHHH
Confidence 3466777777777666542 34445555555555566666677777764333332 2344444444443
Q ss_pred HhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCC
Q 012360 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT 249 (465)
Q Consensus 176 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 249 (465)
.+.. +....+..++.....|+-++-.+++..+.. +.+|+......+..+|.+.|+..++.+++.+.-+.|++
T Consensus 86 ~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 86 INNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred Hhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3322 334456667788888888888888888654 35677888888888899999999999999888888754
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.18 E-value=0.52 Score=34.66 Aligned_cols=71 Identities=10% Similarity=0.132 Sum_probs=48.3
Q ss_pred CCChhhHHHHHHHHHhcCCHH---HHHHHHHhCCC-CC--ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 351 QPTIEHFVCLVDLLSRAGLLY---QAEEFIKIMPA-ED--KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 351 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.|+..+-..+..++.+..+.+ +++.+++.+.. .| .....-.+.-++.+.|++++|.++.+.+++..|.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 567777777777777777644 45556665532 22 2334555666777888888888888888888888765
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=94.17 E-value=2.4 Score=36.27 Aligned_cols=26 Identities=19% Similarity=0.017 Sum_probs=13.5
Q ss_pred chhhHHHHHHHHHhCCChHHHHHHHH
Q 012360 118 MLNMENALLLMYAKCKEMDEALRLFD 143 (465)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 143 (465)
+...+..+...|.+.|++.+|+..|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 34445555555555555555555443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.82 E-value=6 Score=39.59 Aligned_cols=119 Identities=10% Similarity=0.018 Sum_probs=53.1
Q ss_pred HHHHhcCCHHHHHHHHhcCCC-C--ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCC
Q 012360 260 DMYSKCGSLEEALVTFYKTDC-K--DVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV---SVLAACRHSGL 333 (465)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~---~l~~~~~~~~~ 333 (465)
..+...|+.+....++..+.+ . ++.-..++.-++...|+.+.+..+.+.+.... .|. .-|. .+.-+|+..|+
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCC
T ss_pred hhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCC
Confidence 334445555554444443221 1 12222233333445566666666666655431 111 1221 23344556666
Q ss_pred HHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012360 334 ITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (465)
.....+++..+... ...++.....+.-++...|+.+.+.++++.+..
T Consensus 576 ~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~ 622 (963)
T 4ady_A 576 NSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK 622 (963)
T ss_dssp HHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG
T ss_pred HHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh
Confidence 65555566666542 112222222333334445555555555554443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.29 E-value=0.36 Score=36.62 Aligned_cols=116 Identities=9% Similarity=-0.032 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHhCCC-----CCccc
Q 012360 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI-------EHFVCLVDLLSRAGLLYQAEEFIKIMPA-----EDKFI 387 (465)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~ 387 (465)
++..-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++.+|...|++... .....
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34445566667777777777777654332223331 2445566677777777777777665321 00000
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 388 SYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
+...+. ....... -. ..+.+...-+.++.+|...|++++|+.+++.+.
T Consensus 102 ~~~~~~----~~ss~p~-------s~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 102 VRPSTG----NSASTPQ-------SQ-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred cccccc----ccCCCcc-------cc-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 000000 0000000 00 012334567789999999999999999998653
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.36 Score=36.62 Aligned_cols=94 Identities=12% Similarity=0.031 Sum_probs=46.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC-CCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC-----------
Q 012360 289 MIEGLANYGLGNEALRVFYQMERKG-IKPN-------EATFVSVLAACRHSGLITEGCQLFRRMGGVYR----------- 349 (465)
Q Consensus 289 l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------- 349 (465)
-+..+...+.++.|+-+...+.... ..|+ ..++..+.+++...+++.+|...|+++.+...
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3444555555666555544432210 0122 12445555666666777777666666432111
Q ss_pred ------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012360 350 ------------VQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 350 ------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (465)
...+.+.-..+..+|.+.|++++|+.+++.++.
T Consensus 106 ~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 106 TGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 111223333455566666666666666666654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.07 E-value=0.34 Score=35.10 Aligned_cols=71 Identities=10% Similarity=0.132 Sum_probs=39.8
Q ss_pred CCChhhHHHHHHHHHhcCCHH---HHHHHHHhCCC-CC--ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 351 QPTIEHFVCLVDLLSRAGLLY---QAEEFIKIMPA-ED--KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 351 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
.|+..+--.+..++.+..+.+ +++.+++.+.. .| ....+-.+.-++.+.|++++|.+..+.+++..|.+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 355555555666666655442 34555554432 22 2334445555666667777777777777666666654
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=93.03 E-value=6.5 Score=37.57 Aligned_cols=227 Identities=12% Similarity=-0.058 Sum_probs=119.5
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHH----HHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 012360 196 KQPEEALELFKKMIDEGVTPDEEV----MVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEA 271 (465)
Q Consensus 196 g~~~~a~~~~~~~~~~~~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 271 (465)
.+.+.|...+....+.. ..+... ...+.......+...++...+...... ..+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 37889999998886543 223222 223333444555344555555554433 23333444455555678999999
Q ss_pred HHHHhcCCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 012360 272 LVTFYKTDCKD---VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVY 348 (465)
Q Consensus 272 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 348 (465)
...|+.+.... ....--+..++...|+.++|..+|..+... . .-|..+.. .+.|..... ...
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~-~fYg~lAa--~~Lg~~~~~-------~~~- 369 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R-GFYPMVAA--QRIGEEYEL-------KID- 369 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C-SHHHHHHH--HHTTCCCCC-------CCC-
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C-ChHHHHHH--HHcCCCCCC-------CCC-
Confidence 99999987532 223344566777889999999999998742 1 12333321 222321000 000
Q ss_pred CCCCC-h-----hhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHHhC---CCC
Q 012360 349 RVQPT-I-----EHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLG---NQS 419 (465)
Q Consensus 349 ~~~~~-~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~ 419 (465)
...+. . .....-+..+...|....|...+..+....+......+.......|.++.++....+....+ ..-
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~ 449 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERF 449 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHS
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhC
Confidence 00010 0 01112345577788888888877766543333333444444556777777765554322211 001
Q ss_pred chhHHHHHHHHhhcCChHHHH
Q 012360 420 HEAYVLLSNFYALEGHWTEVA 440 (465)
Q Consensus 420 ~~~~~~l~~~~~~~g~~~~a~ 440 (465)
+..|..++....+.-.++.++
T Consensus 450 P~~y~~~i~~~a~~~gv~~~l 470 (618)
T 1qsa_A 450 PLAYNDLFKRYTSGKEIPQSY 470 (618)
T ss_dssp CCTTHHHHHHHHTTSSSCHHH
T ss_pred CcchHHHHHHHHHHcCCCHHH
Confidence 223445555555554455433
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=92.67 E-value=4.5 Score=34.89 Aligned_cols=163 Identities=9% Similarity=0.032 Sum_probs=90.7
Q ss_pred HHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHH----HHHHHHcCCCCCHHHHHHHHHHhccchh
Q 012360 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALEL----FKKMIDEGVTPDEEVMVSVLSACSSLSN 232 (465)
Q Consensus 157 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 232 (465)
+..-|.+.+++++|.+++-.- ...+.+.|+...+-++ ++.+.+.++++|......++..+.....
T Consensus 41 i~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~ 109 (336)
T 3lpz_A 41 VAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQP 109 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCT
T ss_pred HHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 344456666666666654332 2334555665554444 3555567778887777777766654332
Q ss_pred h-----HhHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHH
Q 012360 233 L-----QYGRLVHRFILQNN--ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRV 305 (465)
Q Consensus 233 ~-----~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 305 (465)
- .-.....++-.+.| ..-++.....+...|.+.+++.+|...|--...+++..+..++.-+...+...++
T Consensus 110 ~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~--- 186 (336)
T 3lpz_A 110 GEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA--- 186 (336)
T ss_dssp TCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH---
T ss_pred CCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH---
Confidence 1 11222333333333 3456778888999999999999999888543333335554444433333221111
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 012360 306 FYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMG 345 (465)
Q Consensus 306 ~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 345 (465)
+... ...+--|.-.++...|..+++...
T Consensus 187 -----------dlfi-aRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 187 -----------PLYC-ARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp -----------HHHH-HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----------HHHH-HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1111 223334556678888877766654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.29 E-value=12 Score=38.96 Aligned_cols=116 Identities=13% Similarity=0.075 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCC----C----------------------hhhHHHHHHHHHHcCChHHHHHH
Q 012360 252 AFVKTALIDMYSKCGSLEEALVTFYKTDCK----D----------------------VVTWTTMIEGLANYGLGNEALRV 305 (465)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~----------------------~~~~~~l~~~~~~~~~~~~a~~~ 305 (465)
+...-.+..++...|++++|.+.|++.... + ..-|..++..+-+.+.++.+.++
T Consensus 842 ~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~f 921 (1139)
T 4fhn_B 842 PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF 921 (1139)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 333344566667777777777777654310 0 01244455555566666666655
Q ss_pred HHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCH
Q 012360 306 FYQMERKGIKPNE----ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLL 370 (465)
Q Consensus 306 ~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 370 (465)
-....+....-+. ..|..+.+.+...|++++|...+-.+... .--......|+..++..|..
T Consensus 922 a~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 922 SLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---PLKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---SSCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHhCCCh
Confidence 5554432111111 13455566666666666666666555422 12234455555555554443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.34 E-value=2.1 Score=41.76 Aligned_cols=123 Identities=12% Similarity=-0.047 Sum_probs=73.9
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHHcCCCCchhh-H-HHHHHHhcchhh-hhhhhHHHHHHHHh------CCcc-c----
Q 012360 54 TLMSIYNDFSD-SGEVLILFKQLIFEGIVADKIT-L-VILFSACARLEK-LHYGKTVHCYATKV------GLEY-M---- 118 (465)
Q Consensus 54 ~l~~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~-~-~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~---- 118 (465)
.++..+...++ .+.|..+|+++.... |.... + ..++..+...++ --+|.+++.+.++. ..++ +
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 34444445566 577999999998763 43333 2 223333333222 22344444444321 1111 1
Q ss_pred ------hhhHHHHHHHHHhCCChHHHHHHHHhh-CCCC-CchhHHHHHHHHHhcCChHHHHHHHHHhh
Q 012360 119 ------LNMENALLLMYAKCKEMDEALRLFDEM-GSRR-NIVSLNILINGYIDMELVDLAREVFDEIV 178 (465)
Q Consensus 119 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 178 (465)
......=.+.+...|+++-|+++-++. ...| +-.+|..|..+|...|+++.|+-.++.++
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 112222245566789999999998887 4455 45689999999999999999998888884
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=91.20 E-value=2.4 Score=28.67 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=60.7
Q ss_pred hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012360 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311 (465)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 311 (465)
..++|..|-+.+...+. ...+-..-+..+...|+|++|..+.+...-||...|.+|.. .+.|-.+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777777776653 22222233456778999999999999999999999887755 467888888888878877
Q ss_pred CCCCCCHHHH
Q 012360 312 KGIKPNEATF 321 (465)
Q Consensus 312 ~g~~p~~~~~ 321 (465)
+| .|....|
T Consensus 97 sg-~p~~q~F 105 (115)
T 2uwj_G 97 SS-DPALADF 105 (115)
T ss_dssp CS-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 76 4544444
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=90.93 E-value=2.6 Score=28.57 Aligned_cols=85 Identities=18% Similarity=0.240 Sum_probs=59.5
Q ss_pred hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012360 232 NLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMER 311 (465)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 311 (465)
..++|..|-+.+...+. ...+-..-+..+...|+|++|..+.+...-||...|.+|... +.|-.+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45777777777776653 222222334567788999999999999999999988877654 56777888888777777
Q ss_pred CCCCCCHHHH
Q 012360 312 KGIKPNEATF 321 (465)
Q Consensus 312 ~g~~p~~~~~ 321 (465)
+| .|....|
T Consensus 98 sg-~p~~q~F 106 (116)
T 2p58_C 98 SQ-DPRIQTF 106 (116)
T ss_dssp CC-CHHHHHH
T ss_pred CC-CHHHHHH
Confidence 65 4544444
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.57 E-value=0.87 Score=30.77 Aligned_cols=53 Identities=11% Similarity=0.098 Sum_probs=30.5
Q ss_pred HHHHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 012360 25 IHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEG 79 (465)
Q Consensus 25 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 79 (465)
+..+...|++++|..+.+....||...|-+|.. .+.|-.+++..-+.++..+|
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 445555666666666666666666666655544 35555555555555555544
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=90.05 E-value=0.94 Score=30.66 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=22.9
Q ss_pred HHHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 012360 26 HFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFE 78 (465)
Q Consensus 26 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 78 (465)
..+...|++++|..+.+....||...|-+|.. .+.|-.+++..-+.++..+
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 33444455555555555555455444444433 2334444444444444333
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.98 E-value=1.4 Score=30.01 Aligned_cols=61 Identities=13% Similarity=0.213 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHH
Q 012360 300 NEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362 (465)
Q Consensus 300 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 362 (465)
=+..+-++.+....+-|++......+++|.+.+++..|.++++-++.+ ..+...+|..+++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 345566666666777888888888888888888888888888888764 3333455666554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.49 E-value=3 Score=30.71 Aligned_cols=66 Identities=15% Similarity=0.085 Sum_probs=37.0
Q ss_pred CCccchHHHHHHHHHhcCC---hHHHHHHHHHHHHhCCC-CchhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 383 EDKFISYKALLSACITYSE---FDLGKKVANNMMKLGNQ-SHEAYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 383 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
.++..+--.+.+++.+..+ ..+++.+++.....+|. .....+.|+.++.+.|++++|+++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444455555555443 33566666666665553 333555666666666666666666665544
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.36 E-value=3.1 Score=28.40 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHH
Q 012360 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK 112 (465)
Q Consensus 67 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (465)
+..+-++.+...++.|++......+++|-+.+++..|.++++-+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444445555555555555555555555555555555443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=88.78 E-value=1.3 Score=36.70 Aligned_cols=58 Identities=16% Similarity=0.089 Sum_probs=35.2
Q ss_pred HHhcCCHHHHHHHHH-hCCCCC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 364 LSRAGLLYQAEEFIK-IMPAED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 364 ~~~~g~~~~A~~~~~-~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
+.+.|.+++|++... .++.+| |...-..++..+|-.|++++|.+-++-..+++|....
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 445666666666443 344445 4445555666666677777777777777776665433
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.78 E-value=2.2 Score=30.98 Aligned_cols=62 Identities=15% Similarity=0.080 Sum_probs=28.9
Q ss_pred cchHHHHHHHHHhcCC---hHHHHHHHHHHHHhCC-CCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 012360 386 FISYKALLSACITYSE---FDLGKKVANNMMKLGN-QSHEAYVLLSNFYALEGHWTEVAEARRNMK 447 (465)
Q Consensus 386 ~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 447 (465)
+.+--.+.+++.+..+ ..+++.++++..+.+| .....+..|+.++.+.|++++|+++.+.+.
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333334444444332 2345555555555444 223344555555555555555555555443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.39 E-value=2.1 Score=38.28 Aligned_cols=55 Identities=11% Similarity=0.049 Sum_probs=37.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHhh-CC-CCCchhHHHHHHHHHhcCChHHHHHHHHHh
Q 012360 123 NALLLMYAKCKEMDEALRLFDEM-GS-RRNIVSLNILINGYIDMELVDLAREVFDEI 177 (465)
Q Consensus 123 ~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 177 (465)
..++..+...|++++|...+..+ .. +-+...|..++.++.+.|+..+|++.|+..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44566667777777777766666 22 335567777777777777777777777665
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.30 E-value=13 Score=38.87 Aligned_cols=60 Identities=8% Similarity=-0.066 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCC-CCch----hHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 389 YKALLSACITYSEFDLGKKVANNMMKLGN-QSHE----AYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
|..++..+-+.+.++.++++.+.+++..+ ++.. .|..+...+...|++++|-..+-.+.+
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 55566666666666667666666666442 2221 455666666667777776666554443
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=87.72 E-value=9.1 Score=30.38 Aligned_cols=20 Identities=5% Similarity=-0.145 Sum_probs=8.4
Q ss_pred CCCCcccHHHHHHHHHhcCC
Q 012360 45 PFRDVGSWNTLMSIYNDFSD 64 (465)
Q Consensus 45 ~~~~~~~~~~l~~~~~~~~~ 64 (465)
..++...-...+..+.+.|.
T Consensus 29 ~~~~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 29 QDDSYYVRRAAAYALGKIGD 48 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHHhCC
Confidence 33343333344444444444
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=87.44 E-value=6.1 Score=32.76 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=74.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCh----hhHHHHHHHHH
Q 012360 291 EGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTI----EHFVCLVDLLS 365 (465)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~ 365 (465)
....+.|++++++.....-++. .| |...-..+++.+|-.|++++|.+-++...+ ..|+. ..|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a-- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA-- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH--
Confidence 3456778888998888887777 44 556667788889999999999988888773 24443 334444432
Q ss_pred hcCCHHHHH-HHHHhCCCCC----ccchH-HHHHHHHH--hcCChHHHHHHHHHHHHhCCCCch
Q 012360 366 RAGLLYQAE-EFIKIMPAED----KFISY-KALLSACI--TYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 366 ~~g~~~~A~-~~~~~~~~~~----~~~~~-~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
+..+ ++|.--. .| .+.-| ..++.+.. ..|+.++|.++-.++.+.-|..+.
T Consensus 78 -----E~~R~~vfaG~~-~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 -----AQARKDFAQGAA-TAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp -----HHHHHHHTTSCC-CEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred -----HHHHHHHHcCCC-CCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1111 1222111 11 22223 34444443 468999999999999888776655
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.95 E-value=14 Score=31.66 Aligned_cols=164 Identities=12% Similarity=0.045 Sum_probs=92.0
Q ss_pred HHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHH----HHHHHHcCCCCCHHHHHHHHHHhccch-
Q 012360 157 LINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALEL----FKKMIDEGVTPDEEVMVSVLSACSSLS- 231 (465)
Q Consensus 157 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----~~~~~~~~~~~~~~~~~~ll~~~~~~~- 231 (465)
+..-|.+.+++++|.+++..- ...+.+.|+...|-++ ++...+.+.+++......++..+..-.
T Consensus 39 l~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~ 107 (312)
T 2wpv_A 39 IANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDP 107 (312)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 344455556666666554332 2335556666655543 555566778888887777777665422
Q ss_pred ----hhHhHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHc---CChHHH
Q 012360 232 ----NLQYGRLVHRFILQNN--ITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANY---GLGNEA 302 (465)
Q Consensus 232 ----~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a 302 (465)
+..-.....++..+.| ...++.....+...|.+.|++.+|...|-.....+...+..++.-+... |...++
T Consensus 108 ~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~ 187 (312)
T 2wpv_A 108 SEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTV 187 (312)
T ss_dssp TCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred CCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchH
Confidence 1222333344444433 2346778889999999999999998877633322344444444333322 222221
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 012360 303 LRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346 (465)
Q Consensus 303 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 346 (465)
- .. ....+-.|.-.|+...|..+++...+
T Consensus 188 d--------------lf-~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 188 A--------------EF-FSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp H--------------HH-HHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred H--------------HH-HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1 11 12223335567888888888887653
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.88 E-value=3.6 Score=29.76 Aligned_cols=60 Identities=13% Similarity=0.236 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHH
Q 012360 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362 (465)
Q Consensus 301 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 362 (465)
+..+-++.+....+-|++......+++|.+.+++..|.++|+-++.+ ..+....|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 45556666666778889999999999999999999999999988864 3344556766654
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.30 E-value=7.1 Score=28.31 Aligned_cols=42 Identities=12% Similarity=0.099 Sum_probs=23.2
Q ss_pred hHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh
Q 012360 104 KTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM 145 (465)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 145 (465)
.+-++.+....+.|++.+..+.+++|.+.+|+..|.++|+-+
T Consensus 73 rrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~v 114 (152)
T 2y69_E 73 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVV 114 (152)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333444444445555555566666666666666666666555
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.66 E-value=9.9 Score=29.90 Aligned_cols=50 Identities=12% Similarity=-0.025 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHhCCC----CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 012360 367 AGLLYQAEEFIKIMPA----EDKFISYKALLSACITYSEFDLGKKVANNMMKLG 416 (465)
Q Consensus 367 ~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (465)
++...++.++|..|.. ..-...|......+-..|++++|.++|+..++.+
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3446677777776643 2244556777777777888888888888888765
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.82 E-value=6.5 Score=35.69 Aligned_cols=61 Identities=7% Similarity=-0.022 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 012360 320 TFVSVLAACRHSGLITEGCQLFRRMGGVY-RVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIM 380 (465)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 380 (465)
+...+...|.+.|+++.|.+.+.++.... +...-...+..+++.+...+++..+...++++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45556666666777777777776665421 11222445555666666666666666666554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=81.17 E-value=29 Score=30.85 Aligned_cols=282 Identities=13% Similarity=0.056 Sum_probs=140.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhh----CCCC---CchhHHHHHHHHHhc-CChHHHHHHHHHhhc----C-ChH----H
Q 012360 122 ENALLLMYAKCKEMDEALRLFDEM----GSRR---NIVSLNILINGYIDM-ELVDLAREVFDEIVD----K-DIV----L 184 (465)
Q Consensus 122 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~----~-~~~----~ 184 (465)
...|...|.+.|+.++..+++... +.-| .......+++.+... +..+.-.++..+..+ . -.. .
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777777777766 1111 122344556655543 333333444444322 1 111 1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHhccchhhHhHHHHHHHHHHc--CCCCChhHHH-
Q 012360 185 WRSMMHGCVKAKQPEEALELFKKMIDEGVTPD-----EEVMVSVLSACSSLSNLQYGRLVHRFILQN--NITQDAFVKT- 256 (465)
Q Consensus 185 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~- 256 (465)
-.-++..|...|++.+|.+++.++.+.--..| ...+..-+..|...+++.++...+...... .+.+++.+..
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 23578889999999999999988886422222 223445556677888999998888877553 2223333222
Q ss_pred ---HHHHHHH-hcCCHHHHHHHHhcCC----CC------ChhhHHHHHHHHHHcCChHHHHHHHH-HHHHCCCCCCHHHH
Q 012360 257 ---ALIDMYS-KCGSLEEALVTFYKTD----CK------DVVTWTTMIEGLANYGLGNEALRVFY-QMERKGIKPNEATF 321 (465)
Q Consensus 257 ---~l~~~~~-~~~~~~~a~~~~~~~~----~~------~~~~~~~l~~~~~~~~~~~~a~~~~~-~m~~~g~~p~~~~~ 321 (465)
.-...+. ..+++..|...|-+.. +. +...|..+... .. ++..+...++. .....-..|....+
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL-l~-~~r~el~~~l~~~~~~~~~~pei~~l 259 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI-ML-GQSDDVNQLVSGKLAITYSGRDIDAM 259 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-HT-TCGGGHHHHHHSHHHHTTCSHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH-Hc-CCHHHHHHHhccccccccCCccHHHH
Confidence 2233345 6788888877664321 11 11123222222 22 22222222221 11111123444455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCC
Q 012360 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSE 401 (465)
Q Consensus 322 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 401 (465)
..++.+| ..+++.....+++.... .+..|......+-..+. .-...+. ..+...-...++..+...+.- .
T Consensus 260 ~~L~~a~-~~~dl~~f~~iL~~~~~--~l~~D~~l~~h~~~L~~--~Ir~~~L---~~i~~pYsrIsl~~iA~~l~l--s 329 (394)
T 3txn_A 260 KSVAEAS-HKRSLADFQAALKEYKK--ELAEDVIVQAHLGTLYD--TMLEQNL---CRIIEPYSRVQVAHVAESIQL--P 329 (394)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHSTT--TTTTSHHHHHHHHHHHH--HHHHHHH---HHHHTTCSEEEHHHHHHHHTC--C
T ss_pred HHHHHHH-HhCCHHHHHHHHHHHHH--HHhcChHHHHHHHHHHH--HHHHHHH---HHHhHhhceeeHHHHHHHHCc--C
Confidence 5555554 44677777777666653 23334332111110000 0001111 111111244556666655533 5
Q ss_pred hHHHHHHHHHHHHh
Q 012360 402 FDLGKKVANNMMKL 415 (465)
Q Consensus 402 ~~~a~~~~~~~~~~ 415 (465)
.++++..+-+|+..
T Consensus 330 ~~evE~~L~~lI~d 343 (394)
T 3txn_A 330 MPQVEKKLSQMILD 343 (394)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
Confidence 67777777777763
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=80.64 E-value=19 Score=28.39 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=25.6
Q ss_pred CCcchhhhHHHHHHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCC
Q 012360 15 DSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSD 64 (465)
Q Consensus 15 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 64 (465)
.++..+-...+..+.+.|..+..-.+.+.+..++...-...+.++.+.++
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 44555555555666665554444444444444454444445555555554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 465 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.69 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.67 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.32 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.27 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.26 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.24 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.24 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.22 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.21 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.2 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.19 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.09 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.9 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.89 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.85 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.82 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.82 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.81 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.8 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.75 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.73 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.71 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.66 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.66 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.63 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.6 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.45 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.45 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.44 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.44 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.43 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.43 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.43 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.4 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.38 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.32 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.32 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.31 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.27 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.19 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.17 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.02 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.01 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.01 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.98 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.86 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.81 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.74 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.64 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.58 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.54 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.51 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.31 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.52 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.39 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.12 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.75 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.87 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.83 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.17 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.28 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.19 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=5.3e-24 Score=193.19 Aligned_cols=372 Identities=10% Similarity=0.027 Sum_probs=273.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCCh
Q 012360 56 MSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEM 135 (465)
Q Consensus 56 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 135 (465)
...+.+.|++++|.+.|+++.+.. +-+...+..+...+...|++++|...++.+++.. +.+..++..+..++.+.|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 344556677777777777776542 2234556666666777777777777777776654 33455666677777777777
Q ss_pred HHHHHHHHhh--CCCCCchhHHHHHHHHHhcCChHHHHHHHHHh---hcCChHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 012360 136 DEALRLFDEM--GSRRNIVSLNILINGYIDMELVDLAREVFDEI---VDKDIVLWRSMMHGCVKAKQPEEALELFKKMID 210 (465)
Q Consensus 136 ~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 210 (465)
++|...+... ..+.+...+..........+....+....... ..................+....+...+.....
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhc
Confidence 7777777766 22233333444444444445444444444333 223444555556666677777777777777666
Q ss_pred cCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHH
Q 012360 211 EGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWT 287 (465)
Q Consensus 211 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~ 287 (465)
.. +.+...+..+...+...|+++.|...++...+.. +.+...+..+..++...|++++|...+++.. ..+...+.
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 241 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHH
Confidence 43 2245566666777778888888888888877754 3456677788888888888888888887644 34566778
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHh
Q 012360 288 TMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR 366 (465)
Q Consensus 288 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 366 (465)
.+...+.+.|++++|...|++..+. .| +..++..+..++...|++++|++.++.... ..+.+...+..+...+..
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHH
Confidence 8888899999999999999998886 45 467888899999999999999999999885 445677888899999999
Q ss_pred cCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCC
Q 012360 367 AGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435 (465)
Q Consensus 367 ~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 435 (465)
.|++++|.+.+++... .| +..++..++.++...|++++|++.|+++++++|+++.+|..++.+|.+.|+
T Consensus 318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999998654 44 567788999999999999999999999999999999999999999998885
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=3.4e-22 Score=181.10 Aligned_cols=353 Identities=11% Similarity=0.040 Sum_probs=289.6
Q ss_pred HHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-CCCC-CchhHHHHHHHHHhcCChH
Q 012360 91 FSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-GSRR-NIVSLNILINGYIDMELVD 168 (465)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~ 168 (465)
...+.+.|++++|.+.++++.+.. +-+...+..+..++.+.|++++|...|++. ...| +..+|..+...+.+.|+++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 445667899999999999999874 445778888999999999999999999987 3344 5678999999999999999
Q ss_pred HHHHHHHHhhcC---ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHH
Q 012360 169 LAREVFDEIVDK---DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ 245 (465)
Q Consensus 169 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (465)
+|.+.+...... +..............+....+............. ...............+....+...+.....
T Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHHhhc
Confidence 999999888542 4455556666666777777777777666655433 334444455556667777777777777766
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 012360 246 NNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFV 322 (465)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 322 (465)
.. +.+...+..+...+...|++++|...+++.. +.+...+..+...+...|++++|...+.+....+ ..+...+.
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 241 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHH
Confidence 54 4456788888999999999999999998754 3456788899999999999999999999988764 44567788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcC
Q 012360 323 SVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYS 400 (465)
Q Consensus 323 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 400 (465)
.+...+.+.|++++|+..|+++.+. .+.+...+..+...+...|++++|.+.++.... +.+...+..+...+...|
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 319 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCC
Confidence 8899999999999999999999853 344677889999999999999999999987644 346677888999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 401 EFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 401 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
++++|++.++++++..|+++.++..++.+|.+.|++++|...+++..+.
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999987654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.1e-15 Score=134.16 Aligned_cols=239 Identities=11% Similarity=-0.015 Sum_probs=137.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 012360 188 MMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGS 267 (465)
Q Consensus 188 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 267 (465)
....+.+.|++++|+..|+++++.. +-+..++..+..++...|+++.|...+.+..+.. +-+...+..+..+|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 4556778888888888888887753 2245677777777888888888888888877654 3345666777777777777
Q ss_pred HHHHHHHHhcCCC--CCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 012360 268 LEEALVTFYKTDC--KDV-VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRM 344 (465)
Q Consensus 268 ~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 344 (465)
+++|.+.++.... |+. ..+........ ..+.......+..+...+.+.+|...+.++
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 7777777765431 110 00000000000 000000011112223334455555555555
Q ss_pred hcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchh
Q 012360 345 GGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-E-DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEA 422 (465)
Q Consensus 345 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 422 (465)
.......++...+..+...+...|++++|...+++... . .+...|..++..+...|++++|++.++++++..|+++.+
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 242 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 242 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHH
Confidence 43222223444555566666666666666666665432 2 244556666666666666666666666666666666666
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 423 YVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 423 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
+..++.+|.+.|++++|+..|++..+
T Consensus 243 ~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 243 RYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666666666666666666554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=4e-15 Score=130.61 Aligned_cols=269 Identities=11% Similarity=0.008 Sum_probs=198.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhc--C-ChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc
Q 012360 153 SLNILINGYIDMELVDLAREVFDEIVD--K-DIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS 229 (465)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 229 (465)
..-.....+.+.|++++|...|++..+ | +..+|..+..++...|++++|...|++..+... -+...+..+...+..
T Consensus 21 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 21 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTN 99 (323)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccc
Confidence 344567788899999999999999855 3 567899999999999999999999999988642 356777888888999
Q ss_pred chhhHhHHHHHHHHHHcCCCCChhH-HHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 012360 230 LSNLQYGRLVHRFILQNNITQDAFV-KTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQ 308 (465)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 308 (465)
.|++++|...++...... |+... ......... ..+.......+..+...+.+.+|...+.+
T Consensus 100 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp TTCHHHHHHHHHHHHHTS--TTTGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHhc--cchHHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 999999999999988753 22111 000000000 00111111122333445667788888888
Q ss_pred HHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-c
Q 012360 309 MERKGI-KPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-K 385 (465)
Q Consensus 309 m~~~g~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~ 385 (465)
..+... .++...+..+...+...|++++|+..+++.... .+-+...+..+..+|...|++++|.+.|++... .| +
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 239 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhcc
Confidence 776521 235667888889999999999999999999853 234677888999999999999999999988654 34 6
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch-----------hHHHHHHHHhhcCChHHHHHH
Q 012360 386 FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE-----------AYVLLSNFYALEGHWTEVAEA 442 (465)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----------~~~~l~~~~~~~g~~~~a~~~ 442 (465)
..+|..++.+|.+.|++++|++.|++++++.|++.. .|..+..++...|+.+.+...
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 778999999999999999999999999998877655 346677788888887765543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=4e-10 Score=99.39 Aligned_cols=88 Identities=14% Similarity=0.126 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC-C-----ccchHHHHHHHHHhcCChHHHHHHHHHHHHh------CCCCchhHHHH
Q 012360 359 CLVDLLSRAGLLYQAEEFIKIMPAE-D-----KFISYKALLSACITYSEFDLGKKVANNMMKL------GNQSHEAYVLL 426 (465)
Q Consensus 359 ~l~~~~~~~g~~~~A~~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~p~~~~~~~~l 426 (465)
.+...+...|++++|...++..... + ....+..+...+...|++++|...+++++.. .|....++..+
T Consensus 218 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 297 (366)
T d1hz4a_ 218 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 297 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHH
Confidence 3344444555555555555443321 1 1112333444455555555555555554431 12223344455
Q ss_pred HHHHhhcCChHHHHHHHHHH
Q 012360 427 SNFYALEGHWTEVAEARRNM 446 (465)
Q Consensus 427 ~~~~~~~g~~~~a~~~~~~~ 446 (465)
+.+|.+.|++++|.+.+++.
T Consensus 298 a~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 298 NQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 55555555555555555443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.4e-10 Score=100.12 Aligned_cols=225 Identities=9% Similarity=-0.029 Sum_probs=162.2
Q ss_pred HHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHhcCC---CCChhhHHHHHHHH
Q 012360 218 EVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCG-SLEEALVTFYKTD---CKDVVTWTTMIEGL 293 (465)
Q Consensus 218 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~---~~~~~~~~~l~~~~ 293 (465)
..++.+-..+.+.+.+++|...++.+++.+ |-+...|+....++...| ++++|+..+++.. +.+..+|..+...+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence 455556566777888899999999988875 445667788888877766 5888888888754 34677888888888
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCC---
Q 012360 294 ANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGL--- 369 (465)
Q Consensus 294 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 369 (465)
.+.|++++|+..+.++.+. .| +...|..+...+...|++++|+..++++.+. .+.+...|+.+..++.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccch
Confidence 8889999999999888876 44 5678888888888889999999999988853 23356677777777766665
Q ss_pred ---HHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHhhc--CChHHHH
Q 012360 370 ---LYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSH--EAYVLLSNFYALE--GHWTEVA 440 (465)
Q Consensus 370 ---~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~--g~~~~a~ 440 (465)
+++|.+.+..+.. .| +...|..+...+.. ...+++.+.++.+.++.|... ..+..++..|... +..+.+.
T Consensus 199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~ 277 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 277 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 4677777766533 34 56667766665543 446778888888888776543 3455666666543 6667777
Q ss_pred HHHHHHHH
Q 012360 441 EARRNMKE 448 (465)
Q Consensus 441 ~~~~~~~~ 448 (465)
..+++..+
T Consensus 278 ~~~~ka~~ 285 (315)
T d2h6fa1 278 DILNKALE 285 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.26 E-value=4.3e-11 Score=104.81 Aligned_cols=231 Identities=7% Similarity=-0.091 Sum_probs=164.2
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc--cchhhHhHHHHHHHHHHcCCCCChhHH-HHHHHHHHhcCCHH
Q 012360 193 VKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACS--SLSNLQYGRLVHRFILQNNITQDAFVK-TALIDMYSKCGSLE 269 (465)
Q Consensus 193 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~ 269 (465)
...|++++|+.+++...+.. +-+...+..+..++. ..++++.+...+..+.+.. +.+...+ ......+...+.++
T Consensus 84 ~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 84 ESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccH
Confidence 34455777888888877753 224444544444443 3445788888888887764 3334443 44556777788999
Q ss_pred HHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 012360 270 EALVTFYKTDC---KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGG 346 (465)
Q Consensus 270 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 346 (465)
+|+..++.... .+...|+.+...+...|++++|...+....+. .|+. ..+...+...+..+++...+.....
T Consensus 162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHH
Confidence 99999988764 35667888888899999888876655544432 2221 2233445566777788888888764
Q ss_pred CCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHH
Q 012360 347 VYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424 (465)
Q Consensus 347 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 424 (465)
. .+++...+..++..+...|+.++|...+.+... .| +..+|..++..+...|++++|++.++++++++|.....|.
T Consensus 237 ~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~ 314 (334)
T d1dcea1 237 G--RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 314 (334)
T ss_dssp S--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred h--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHH
Confidence 3 345555666777888889999999998887654 44 5677888999999999999999999999999999988888
Q ss_pred HHHHHHhh
Q 012360 425 LLSNFYAL 432 (465)
Q Consensus 425 ~l~~~~~~ 432 (465)
.|...+..
T Consensus 315 ~L~~~~~~ 322 (334)
T d1dcea1 315 DLRSKFLL 322 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhH
Confidence 88777764
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=1.8e-09 Score=95.10 Aligned_cols=287 Identities=11% Similarity=-0.032 Sum_probs=164.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHhh-CCCCCc------hhHHHHHHHHHhcCChHHHHHHHHHhhcC---------ChHHHH
Q 012360 123 NALLLMYAKCKEMDEALRLFDEM-GSRRNI------VSLNILINGYIDMELVDLAREVFDEIVDK---------DIVLWR 186 (465)
Q Consensus 123 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~ 186 (465)
......+...|++++|++++++. ...|+. .++..+...+...|++++|.+.|++.... ....+.
T Consensus 16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 16 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 33455566777777777777765 223321 23444555566666666666666554221 112333
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHc----CCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 012360 187 SMMHGCVKAKQPEEALELFKKMIDE----GVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262 (465)
Q Consensus 187 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (465)
.+...+...|++..+...+...... +..+.. .....+..+...+
T Consensus 96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~--------------------------------~~~~~~~~la~~~ 143 (366)
T d1hz4a_ 96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP--------------------------------MHEFLVRIRAQLL 143 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST--------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhh--------------------------------HHHHHHHHHHHHH
Confidence 4444555555555555555544321 011000 0011233344455
Q ss_pred HhcCCHHHHHHHHhcCCC--------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHH
Q 012360 263 SKCGSLEEALVTFYKTDC--------KDVVTWTTMIEGLANYGLGNEALRVFYQMERK----GIKPN--EATFVSVLAAC 328 (465)
Q Consensus 263 ~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~--~~~~~~l~~~~ 328 (465)
...|+++.+...+..... .....+..+...+...++...+...+.+.... +..+. ...+..+...+
T Consensus 144 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (366)
T d1hz4a_ 144 WAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 223 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 555555555555543221 11223444455566667777777766654431 11111 22455566777
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-------CC-ccchHHHHHHHHHh
Q 012360 329 RHSGLITEGCQLFRRMGGVYRVQP--TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-------ED-KFISYKALLSACIT 398 (465)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~-~~~~~~~l~~~~~~ 398 (465)
...|+++.|...+++........+ ....+..+..++...|++++|...++.+.. .| ...++..+...+..
T Consensus 224 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 303 (366)
T d1hz4a_ 224 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 303 (366)
T ss_dssp HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHH
Confidence 888999999999998875321111 233455678889999999999998887632 12 34567888889999
Q ss_pred cCChHHHHHHHHHHHHhCCC---------CchhHHHHHHHHhhcCChHHHHH
Q 012360 399 YSEFDLGKKVANNMMKLGNQ---------SHEAYVLLSNFYALEGHWTEVAE 441 (465)
Q Consensus 399 ~~~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~a~~ 441 (465)
.|++++|.+.+++++++.+. ....+..++..+...++.+++..
T Consensus 304 ~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 304 AGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 99999999999999886532 12234556666777788777654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=8.2e-10 Score=92.63 Aligned_cols=200 Identities=9% Similarity=-0.102 Sum_probs=110.0
Q ss_pred HHHHHHHHhccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHH
Q 012360 219 VMVSVLSACSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLAN 295 (465)
Q Consensus 219 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~ 295 (465)
++..+..+|.+.|++++|...|++.++.. +-++.++..+..+|...|++++|+..|+++. +.+..++..+..++..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 33344445555566666666666555543 3345566666666666666666666666544 2244566667777777
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 012360 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEE 375 (465)
Q Consensus 296 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 375 (465)
.|++++|...|++..+.. +.+......+..++.+.+..+.+..+....... .+....+. ++..+...........
T Consensus 118 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---DKEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---CCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---chhhhhhh-HHHHHHHHHHHHHHHH
Confidence 788888888887777652 223334334444455555555555554444421 12222221 2222222222222121
Q ss_pred HH-HhCCC----CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHH
Q 012360 376 FI-KIMPA----ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424 (465)
Q Consensus 376 ~~-~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 424 (465)
.. ..... .| ...+|..++..+...|++++|++.|+++++.+|++...|.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 11 11111 11 2345667888888889999999999998888888765443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=2e-10 Score=96.48 Aligned_cols=216 Identities=11% Similarity=-0.043 Sum_probs=152.2
Q ss_pred chhhHhHHHHHHHHHHcCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHH
Q 012360 230 LSNLQYGRLVHRFILQNNITQ---DAFVKTALIDMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEAL 303 (465)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 303 (465)
..+.+.+...++++....... ...++..+..+|.+.|++++|...|++.. +.++.+|..+..++...|++++|+
T Consensus 12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhh
Confidence 345566666666766542211 23467778899999999999999998865 457789999999999999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012360 304 RVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 304 ~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (465)
..|++..+. .|+ ..++..+..++...|++++|...|++..+. .+.+......+...+.+.+..+.+..+......
T Consensus 92 ~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 92 EAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 999999987 454 567888999999999999999999999853 233444444455555666665555554443322
Q ss_pred -CCccchHHHHHHHHH----hcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 383 -EDKFISYKALLSACI----TYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 383 -~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
.+....+. ++..+. ..+..+.+...+.......|....+|..++..|...|++++|...+++..+..
T Consensus 168 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 168 SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cchhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 12222222 222222 22334555555555555667777789999999999999999999999876543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.21 E-value=2.7e-09 Score=91.85 Aligned_cols=219 Identities=8% Similarity=-0.002 Sum_probs=111.1
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhccch--------------hhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 012360 199 EEALELFKKMIDEGVTPDEEVMVSVLSACSSLS--------------NLQYGRLVHRFILQNNITQDAFVKTALIDMYSK 264 (465)
Q Consensus 199 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 264 (465)
+.+..+|++++.. ++.+...|...+.-+...+ ..+.+..++++.++...+.+...+...+..+..
T Consensus 33 ~Rv~~vyerAl~~-~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 4466667666654 2233444443333332222 234555666665554334444455555566666
Q ss_pred cCCHHHHHHHHhcCCC--C-C-hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHH
Q 012360 265 CGSLEEALVTFYKTDC--K-D-VVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAA-CRHSGLITEGCQ 339 (465)
Q Consensus 265 ~~~~~~a~~~~~~~~~--~-~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~~~~~~a~~ 339 (465)
.|+.+.|..+|+++.. | + ...|...+....+.++.+.|.++|+++.+.+. .+...|...... +...|+.+.|..
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~ 190 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHH
Confidence 6666666666655332 1 2 22455555556666666666666666555421 122222222221 223455666666
Q ss_pred HHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC----CC--ccchHHHHHHHHHhcCChHHHHHHHHHHH
Q 012360 340 LFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA----ED--KFISYKALLSACITYSEFDLGKKVANNMM 413 (465)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 413 (465)
+|+.+.. ..+.+...+...++.+.+.|+++.|+.+|++... +| ....|...+..-...|+.+.+..+++++.
T Consensus 191 i~e~~l~--~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 191 IFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHH--HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHH--hhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666654 2233455555666666666666666666655321 11 12245555555555666666666666666
Q ss_pred HhCCCCch
Q 012360 414 KLGNQSHE 421 (465)
Q Consensus 414 ~~~p~~~~ 421 (465)
+..|....
T Consensus 269 ~~~~~~~~ 276 (308)
T d2onda1 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHCccccc
Confidence 65555443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=1.3e-09 Score=94.03 Aligned_cols=225 Identities=12% Similarity=0.053 Sum_probs=168.5
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhccch-hhHhHHHHHHHHHHcCCCCChhHHHHHH
Q 012360 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTP-DEEVMVSVLSACSSLS-NLQYGRLVHRFILQNNITQDAFVKTALI 259 (465)
Q Consensus 182 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 259 (465)
...++.+...+.+.+.+++|++.++++++. .| +...|+....++...| ++++|...++...+.. +-+..+|..+.
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~ 119 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHh
Confidence 456777888889999999999999999996 44 4556677777777665 5899999999998875 45688999999
Q ss_pred HHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC--
Q 012360 260 DMYSKCGSLEEALVTFYKTD---CKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGL-- 333 (465)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~-- 333 (465)
.++.+.|++++|+..++++. +.+...|..+...+...|++++|+..++++.+. .| +...|+.+...+.+.+.
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccc
Confidence 99999999999999999876 346789999999999999999999999999987 44 56677777666665554
Q ss_pred ----HHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC---ccchHHHHHHHHHh--cCChH
Q 012360 334 ----ITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED---KFISYKALLSACIT--YSEFD 403 (465)
Q Consensus 334 ----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~---~~~~~~~l~~~~~~--~~~~~ 403 (465)
+++|+..+.++.+. .+.+...|..+...+... ..+++.+.++.... .| +...+..++..|.. .++.+
T Consensus 198 ~~~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~ 274 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 274 (315)
T ss_dssp SHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hhhhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHH
Confidence 67899999888853 234677777776665544 45666666655422 22 34445556666543 35566
Q ss_pred HHHHHHHHHHH
Q 012360 404 LGKKVANNMMK 414 (465)
Q Consensus 404 ~a~~~~~~~~~ 414 (465)
.+...++++.+
T Consensus 275 ~~~~~~~ka~~ 285 (315)
T d2h6fa1 275 NKEDILNKALE 285 (315)
T ss_dssp SHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66677766655
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.19 E-value=3.6e-09 Score=91.01 Aligned_cols=213 Identities=8% Similarity=-0.013 Sum_probs=148.8
Q ss_pred HhHHHHHHHHHHcCCCCChhHHHHHHHHHHh--------------cCCHHHHHHHHhcCC----CCChhhHHHHHHHHHH
Q 012360 234 QYGRLVHRFILQNNITQDAFVKTALIDMYSK--------------CGSLEEALVTFYKTD----CKDVVTWTTMIEGLAN 295 (465)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~ 295 (465)
+.+..+|++++..- +.++..|...+..+.. .+..++|..+|++.. +.+...|...+..+..
T Consensus 33 ~Rv~~vyerAl~~~-~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 44455566655542 3344455444443322 234567778887643 2355677888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHH-HHhcCCHHHHH
Q 012360 296 YGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDL-LSRAGLLYQAE 374 (465)
Q Consensus 296 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~ 374 (465)
.|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++|+++.+. .+.+...|...... +...|+.+.|.
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~ 189 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHH
Confidence 8999999999999887632223456788888888889999999999998853 23344445444433 34467889999
Q ss_pred HHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch----hHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012360 375 EFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE----AYVLLSNFYALEGHWTEVAEARRNMKE 448 (465)
Q Consensus 375 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~ 448 (465)
.+|+.+.. +.++..|...+..+...|+++.|..+|+++++..|.++. .|...+..-...|+.+.+..+.+++.+
T Consensus 190 ~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99887754 335677888888888999999999999999887765443 677777777888999999999888765
Q ss_pred h
Q 012360 449 L 449 (465)
Q Consensus 449 ~ 449 (465)
.
T Consensus 270 ~ 270 (308)
T d2onda1 270 A 270 (308)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.09 E-value=5e-11 Score=104.43 Aligned_cols=246 Identities=11% Similarity=-0.055 Sum_probs=178.4
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHHH-HHH---HHHH-------hccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 012360 194 KAKQPEEALELFKKMIDEGVTPDEEV-MVS---VLSA-------CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMY 262 (465)
Q Consensus 194 ~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~---ll~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (465)
..+..++|++++++.++. .|+..+ |+. ++.. +...|++++|...++...+.. +.+...+..+..++
T Consensus 41 ~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~ 117 (334)
T d1dcea1 41 AGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (334)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHH
Confidence 334457888889888874 455433 322 1222 234566888999999988765 44666777777777
Q ss_pred HhcC--CHHHHHHHHhcCC---CCChhhHHH-HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 012360 263 SKCG--SLEEALVTFYKTD---CKDVVTWTT-MIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITE 336 (465)
Q Consensus 263 ~~~~--~~~~a~~~~~~~~---~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~ 336 (465)
...+ ++++|...++++. +++...+.. ....+...+.+++|...++++.+.. +-+...|..+..++...|++++
T Consensus 118 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~ 196 (334)
T d1dcea1 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPD 196 (334)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHH
Confidence 6655 5889999998865 334555543 4466777899999999999988773 2256788888999999999988
Q ss_pred HHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC--CCCccchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012360 337 GCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMP--AEDKFISYKALLSACITYSEFDLGKKVANNMMK 414 (465)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (465)
|...++..... .|. ...+...+...+..+++...+.... ..++...+..++..+...|++++|+..+.+..+
T Consensus 197 A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 270 (334)
T d1dcea1 197 SGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEP 270 (334)
T ss_dssp SSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 86665554421 121 1223444566677777877776542 234555666777788888999999999999999
Q ss_pred hCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 415 LGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 415 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
.+|.+..++..++.++...|++++|..++++..+.
T Consensus 271 ~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 271 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988765
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.90 E-value=2.7e-09 Score=85.49 Aligned_cols=117 Identities=7% Similarity=-0.140 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHH
Q 012360 316 PNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALL 393 (465)
Q Consensus 316 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~ 393 (465)
|+...+......+.+.|++++|+..|+++... .+.+...|..+..+|.+.|++++|...|+.... .| +..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 66666777778888888888888888887752 244677777888888888888888888877654 34 566777788
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC
Q 012360 394 SACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434 (465)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 434 (465)
.+|...|++++|+..|++++++.|++...+...+..+...+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~ 120 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 88888888888888888888877765554444444444433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=8.5e-09 Score=74.08 Aligned_cols=103 Identities=14% Similarity=-0.015 Sum_probs=58.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCCh
Q 012360 325 LAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEF 402 (465)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 402 (465)
...+...|++++|+..|+++.+. .+.+...|..+..+|...|++++|+..++.... +.++..|..++.++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 34455566666666666666532 233455555666666666666666666555432 23455566666666666666
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHH
Q 012360 403 DLGKKVANNMMKLGNQSHEAYVLLSNF 429 (465)
Q Consensus 403 ~~a~~~~~~~~~~~p~~~~~~~~l~~~ 429 (465)
++|+..|+++++..|+++.++..+..+
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 666666666666666666555554443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=9.7e-09 Score=73.78 Aligned_cols=92 Identities=8% Similarity=-0.010 Sum_probs=83.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCC
Q 012360 358 VCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGH 435 (465)
Q Consensus 358 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 435 (465)
..-...+.+.|++++|...|++... +.++..|..+..++...|++++|+..++++++.+|+++..|..++.++...|+
T Consensus 7 ~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 7 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 3456778999999999999998754 34778899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHh
Q 012360 436 WTEVAEARRNMKEL 449 (465)
Q Consensus 436 ~~~a~~~~~~~~~~ 449 (465)
+++|...+++..+.
T Consensus 87 ~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988754
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=3.9e-08 Score=77.57 Aligned_cols=125 Identities=10% Similarity=-0.065 Sum_probs=98.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCC
Q 012360 290 IEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGL 369 (465)
Q Consensus 290 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 369 (465)
...+...|+++.|++.|.++ ..|+..++..+..+|...|++++|+..|++..+. -+.+...|..+..+|.+.|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhcc
Confidence 55677889999999988764 2567778888899999999999999999999853 24467788889999999999
Q ss_pred HHHHHHHHHhCCC----CCc--------------cchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc
Q 012360 370 LYQAEEFIKIMPA----EDK--------------FISYKALLSACITYSEFDLGKKVANNMMKLGNQSH 420 (465)
Q Consensus 370 ~~~A~~~~~~~~~----~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 420 (465)
+++|.+.|++... .+. ..++..+..++...|++++|.+.++++++..|...
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~ 154 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 154 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcc
Confidence 9999988877521 110 13455677788889999999999999988888753
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.82 E-value=6.5e-09 Score=74.02 Aligned_cols=90 Identities=11% Similarity=-0.077 Sum_probs=81.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC
Q 012360 357 FVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 434 (465)
...+...+.+.|++++|...|+++.. .| ++..|..++.++.+.|++++|+..++++++.+|+++.++..++..|...|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 44567788999999999999998754 44 67889999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHH
Q 012360 435 HWTEVAEARRNM 446 (465)
Q Consensus 435 ~~~~a~~~~~~~ 446 (465)
++++|.+.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999875
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=2.8e-08 Score=75.91 Aligned_cols=120 Identities=5% Similarity=-0.037 Sum_probs=97.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHh
Q 012360 321 FVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACIT 398 (465)
Q Consensus 321 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~ 398 (465)
+......|.+.|++++|+..|+++.+. .+.+...|..+..+|...|++++|...|++... +| +..+|..++.++..
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 334466788999999999999999863 245688888999999999999999999998754 44 66789999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHH--hhcCChHHHHHH
Q 012360 399 YSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY--ALEGHWTEVAEA 442 (465)
Q Consensus 399 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~ 442 (465)
.|++++|+..+++++++.|+++.++..+..+. ...+.+++|...
T Consensus 91 ~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999877776554 344556666554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.80 E-value=9.8e-09 Score=82.15 Aligned_cols=97 Identities=7% Similarity=-0.122 Sum_probs=80.2
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-ChhhHHH
Q 012360 281 KDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQP-TIEHFVC 359 (465)
Q Consensus 281 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 359 (465)
|+...+......+.+.|++++|+..|.+..+.. +.+...|..+..+|.+.|++++|+..|+++.+ +.| +...|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHHH
Confidence 455666677888999999999999999888763 33567888889999999999999999999984 344 5778888
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC
Q 012360 360 LVDLLSRAGLLYQAEEFIKIMP 381 (465)
Q Consensus 360 l~~~~~~~g~~~~A~~~~~~~~ 381 (465)
+..+|...|++++|...|+++.
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=2.2e-07 Score=73.14 Aligned_cols=123 Identities=11% Similarity=-0.035 Sum_probs=101.1
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 012360 259 IDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGC 338 (465)
Q Consensus 259 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 338 (465)
...+...|+++.|++.|.++.++++.+|..+...|...|++++|++.|++.++.. +-+...|..+..++.+.|++++|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 4567788999999999999998999999999999999999999999999998873 234678889999999999999999
Q ss_pred HHHHHhhcCCC-----------CC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012360 339 QLFRRMGGVYR-----------VQ--P-TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA 382 (465)
Q Consensus 339 ~~~~~~~~~~~-----------~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (465)
..|++...... .. + ...++..+..++.+.|++++|.+.++....
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999864211 00 0 124566788889999999999999987643
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=4.4e-08 Score=74.77 Aligned_cols=94 Identities=11% Similarity=0.042 Sum_probs=84.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC
Q 012360 357 FVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEG 434 (465)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 434 (465)
+......|.+.|++++|...|+++.. +.+...|..++.++...|++++|+..|+++++.+|.+..+|..++.++...|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 34456778899999999999998754 3477889999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhc
Q 012360 435 HWTEVAEARRNMKELQ 450 (465)
Q Consensus 435 ~~~~a~~~~~~~~~~~ 450 (465)
++++|...+++.....
T Consensus 93 ~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 93 KFRAALRDYETVVKVK 108 (159)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHcC
Confidence 9999999999887654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.71 E-value=9.8e-07 Score=74.62 Aligned_cols=20 Identities=25% Similarity=0.185 Sum_probs=12.9
Q ss_pred HHHHHhCCChHHHHHHHHhh
Q 012360 126 LLMYAKCKEMDEALRLFDEM 145 (465)
Q Consensus 126 ~~~~~~~g~~~~A~~~~~~~ 145 (465)
...|...|++++|.+.|.+.
T Consensus 44 a~~y~~~~~~~~A~~~y~kA 63 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKA 63 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHH
Confidence 45566667777777766655
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=1.8e-07 Score=72.04 Aligned_cols=85 Identities=11% Similarity=-0.014 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhh
Q 012360 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL 432 (465)
Q Consensus 355 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 432 (465)
.+|+.+..+|.+.|++++|...++.... .| ++..|..++.++...|++++|+..|+++++++|+++.+...+..+..+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3567788889999999999999988654 44 778899999999999999999999999999999999988888888776
Q ss_pred cCChHHH
Q 012360 433 EGHWTEV 439 (465)
Q Consensus 433 ~g~~~~a 439 (465)
.+...+.
T Consensus 143 ~~~~~~~ 149 (170)
T d1p5qa1 143 IRRQLAR 149 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.66 E-value=1.1e-06 Score=74.41 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 012360 184 LWRSMMHGCVKAKQPEEALELFKKMIDE 211 (465)
Q Consensus 184 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 211 (465)
++..+...+...|++++|+..|++....
T Consensus 160 ~~~~la~~~~~~g~y~~A~~~~~~~~~~ 187 (290)
T d1qqea_ 160 CFIKCADLKALDGQYIEASDIYSKLIKS 187 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcChHHHHHHHHHHHHHh
Confidence 4555666666667777777766666553
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.63 E-value=1.4e-05 Score=66.22 Aligned_cols=224 Identities=10% Similarity=-0.079 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc----chhhHhHHHHHHHHHHcCCCCChhHHHH
Q 012360 182 IVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS----LSNLQYGRLVHRFILQNNITQDAFVKTA 257 (465)
Q Consensus 182 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 257 (465)
+..+..|...+...+++++|++.|++..+.| +...+..|-..|.. ..+...+...+......+
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---------- 68 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---------- 68 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc----------
Confidence 4455555666666777777777777776654 33333333333332 334555555555544443
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----
Q 012360 258 LIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLAN----YGLGNEALRVFYQMERKGIKPNEATFVSVLAACR---- 329 (465)
Q Consensus 258 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~---- 329 (465)
++.....+...+.. ..+.+.|...++...+.|.. .....+...+.
T Consensus 69 ------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~ 121 (265)
T d1ouva_ 69 ------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKV 121 (265)
T ss_dssp ------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSS
T ss_pred ------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCc
Confidence 11222222222221 24555666666666555421 11122222222
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhCCCCCccchHHHHHHHHHh----cCC
Q 012360 330 HSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR----AGLLYQAEEFIKIMPAEDKFISYKALLSACIT----YSE 401 (465)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 401 (465)
.......+...+..... ..+...+..|...|.. ..+...+..+++.....++......+...+.. ..+
T Consensus 122 ~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d 197 (265)
T d1ouva_ 122 VTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKN 197 (265)
T ss_dssp SCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCC
T ss_pred ccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccc
Confidence 23345555565555543 2344555556665654 34555666666665555566666666666654 457
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhh----cCChHHHHHHHHHHHHhcC
Q 012360 402 FDLGKKVANNMMKLGNQSHEAYVLLSNFYAL----EGHWTEVAEARRNMKELQT 451 (465)
Q Consensus 402 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 451 (465)
+++|+..|+++.+.+ ++..+..|+.+|.+ ..++++|.++|++..+.|.
T Consensus 198 ~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 198 FKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 888888888887775 34457777777765 3477788888887766654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=1.4e-07 Score=67.63 Aligned_cols=104 Identities=12% Similarity=-0.009 Sum_probs=81.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHhCCC-CCc---cchHHHHHH
Q 012360 322 VSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGL---LYQAEEFIKIMPA-EDK---FISYKALLS 394 (465)
Q Consensus 322 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~~---~~~~~~l~~ 394 (465)
..+++.+...+++++|.+.|++.... -+.+..++..+..++.+.++ +++|+.+++++.. .|+ ..+|..++.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 45677788889999999999999853 34577888888888887554 4568999988765 332 236788999
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 012360 395 ACITYSEFDLGKKVANNMMKLGNQSHEAYVLLS 427 (465)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 427 (465)
+|.+.|++++|++.|+++++.+|++..+.....
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~ 113 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 113 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 999999999999999999999999987555443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.45 E-value=8.1e-07 Score=66.87 Aligned_cols=74 Identities=8% Similarity=-0.033 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 012360 356 HFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNF 429 (465)
Q Consensus 356 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 429 (465)
+|..+..+|.+.|++++|++.++.+.. .| +..+|..++.++...|++++|+..|+++++++|++..+...+..+
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 144 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 144 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 444555566666666666666655432 22 455566666666666666666666666666666666554444443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.45 E-value=1.3e-06 Score=66.89 Aligned_cols=93 Identities=14% Similarity=0.020 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhh
Q 012360 355 EHFVCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL 432 (465)
Q Consensus 355 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 432 (465)
.+|..+..+|.+.|++++|+..++.... +.+..+|..++.++...|++++|+..|+++++++|+++.+...+..+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3566678889999999999999988654 44778899999999999999999999999999999999988888888777
Q ss_pred cCChHH-HHHHHHHHH
Q 012360 433 EGHWTE-VAEARRNMK 447 (465)
Q Consensus 433 ~g~~~~-a~~~~~~~~ 447 (465)
.+...+ ..+.+..|-
T Consensus 145 ~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 145 AKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 665544 455555554
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=1.5e-07 Score=67.48 Aligned_cols=93 Identities=9% Similarity=0.021 Sum_probs=78.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC--CCccchHHHHHHHHHhcC---ChHHHHHHHHHHHHhCCCC--chhHHHHHHHH
Q 012360 358 VCLVDLLSRAGLLYQAEEFIKIMPA--EDKFISYKALLSACITYS---EFDLGKKVANNMMKLGNQS--HEAYVLLSNFY 430 (465)
Q Consensus 358 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~ 430 (465)
..+++.+...+++++|.+.|++... ++++.++..++.++.+.+ ++++|+.+++++++.+|.+ ..++..++.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 4678889999999999999998765 447788899999998754 5567999999999988755 34789999999
Q ss_pred hhcCChHHHHHHHHHHHHhc
Q 012360 431 ALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 431 ~~~g~~~~a~~~~~~~~~~~ 450 (465)
.+.|++++|+++|+++.+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhHHHHHHHHHHHHhC
Confidence 99999999999999987754
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.44 E-value=0.00016 Score=59.68 Aligned_cols=230 Identities=8% Similarity=-0.100 Sum_probs=138.4
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHhhcC-ChHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012360 150 NIVSLNILINGYIDMELVDLAREVFDEIVDK-DIVLWRSMMHGCVK----AKQPEEALELFKKMIDEGVTPDEEVMVSVL 224 (465)
Q Consensus 150 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 224 (465)
|+..+..|...+.+.+++++|.+.|++..+. +...+..|...|.. ..+...|...+....+.+.. .....+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~---~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS---NGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc---chhhccc
Confidence 4556777888888999999999999998554 66777777777776 56888999999888876532 2222222
Q ss_pred HH----hccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChH
Q 012360 225 SA----CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGLANYGLGN 300 (465)
Q Consensus 225 ~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 300 (465)
.. .....+.+.|...++...+.|.. .....+...+.... .......
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~---------------------------~~~~~~~ 127 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGK---------------------------VVTRDFK 127 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCS---------------------------SSCCCHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCC---------------------------cccchhH
Confidence 22 23355677788888877776532 12222222222110 0112233
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHh----cCCHHH
Q 012360 301 EALRVFYQMERKGIKPNEATFVSVLAACRH----SGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR----AGLLYQ 372 (465)
Q Consensus 301 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 372 (465)
.+...+...... .+...+..+...+.. ..+...+..+++...+. .+......+...|.. ..++++
T Consensus 128 ~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~~~ 200 (265)
T d1ouva_ 128 KAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKE 200 (265)
T ss_dssp HHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccccc----cccccccchhhhcccCcccccchhh
Confidence 344444443332 233444444444443 34455566666655532 234444555555544 456778
Q ss_pred HHHHHHhCCCCCccchHHHHHHHHHh----cCChHHHHHHHHHHHHhCCCC
Q 012360 373 AEEFIKIMPAEDKFISYKALLSACIT----YSEFDLGKKVANNMMKLGNQS 419 (465)
Q Consensus 373 A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~ 419 (465)
|..+|.......++..+..|...|.. ..+.++|.+.|+++.+.++.+
T Consensus 201 A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 201 ALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred hhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence 88888777656666777777777764 347888999998888877543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=3.7e-07 Score=66.45 Aligned_cols=87 Identities=10% Similarity=0.162 Sum_probs=39.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-C-CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch-------hHHHHHHHH
Q 012360 360 LVDLLSRAGLLYQAEEFIKIMPA-E-DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE-------AYVLLSNFY 430 (465)
Q Consensus 360 l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l~~~~ 430 (465)
+...+.+.|++++|++.|++... . .+..++..+..+|...|++++|+..+++++++.|.++. +|..++..+
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~ 89 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444322 1 23344444555555555555555555555554444332 223333344
Q ss_pred hhcCChHHHHHHHHHH
Q 012360 431 ALEGHWTEVAEARRNM 446 (465)
Q Consensus 431 ~~~g~~~~a~~~~~~~ 446 (465)
...+++++|...+++.
T Consensus 90 ~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 90 FKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHH
Confidence 4444555555555443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=8.8e-07 Score=68.04 Aligned_cols=112 Identities=6% Similarity=0.074 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhc
Q 012360 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITY 399 (465)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 399 (465)
.+......+.+.|++++|+..|.++.......+.... .-......+ ...+|..+..+|.+.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~---------------~~~~~~~~~----~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN---------------EEAQKAQAL----RLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS---------------HHHHHHHHH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccch---------------HHHhhhchh----HHHHHHHHHHHHHhh
Confidence 3444556677778888888888777643111111000 000000000 123577788899999
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 400 SEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 400 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
|++++|+..++++++++|+++.++..++.+|...|++++|...|++..+..
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999987754
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.43 E-value=0.00014 Score=61.45 Aligned_cols=137 Identities=8% Similarity=-0.016 Sum_probs=75.2
Q ss_pred CCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHH
Q 012360 81 VADKITLVILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILING 160 (465)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 160 (465)
.|+..--..+...|.+.|.++.|..++..+. -|..++..+.+.++++.|.+++.+.. +..+|..+...
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~---~~~~~k~~~~~ 78 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN---STRTWKEVCFA 78 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT---CHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 3555555566777777788888877776443 24567777778888888877777653 45577777777
Q ss_pred HHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccch
Q 012360 161 YIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLS 231 (465)
Q Consensus 161 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 231 (465)
+.+......+.-. ......+......++..|-..|.+++...+++..... -+++...++.++..|++.+
T Consensus 79 l~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 79 CVDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HHhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 7766655443221 1112224444456777777777777777777766543 2445556666777666653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.40 E-value=9.7e-07 Score=67.82 Aligned_cols=86 Identities=5% Similarity=-0.096 Sum_probs=66.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 012360 353 TIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-E-DKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFY 430 (465)
Q Consensus 353 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 430 (465)
....+..+..++.+.|++++|+..++.+.. . .++..|..++.++...|++++|+..|++++++.|++..+...+..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 445667778888888999999988887644 3 36677888888888999999999999999999998888777777666
Q ss_pred hhcCChHH
Q 012360 431 ALEGHWTE 438 (465)
Q Consensus 431 ~~~g~~~~ 438 (465)
.+.....+
T Consensus 156 ~~l~~~~~ 163 (169)
T d1ihga1 156 QKIKAQKD 163 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54443333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=3.3e-08 Score=90.76 Aligned_cols=110 Identities=9% Similarity=-0.100 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHH
Q 012360 319 ATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSAC 396 (465)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~ 396 (465)
..+..+...+.+.|+.+.|...+.+.... .| ..++..+...+...|++++|...|++... .| +...|+.++..+
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILA 196 (497)
T ss_dssp ----------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 34444555555555555555555444321 11 23444555555566666666665555432 22 445566666666
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhh
Q 012360 397 ITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL 432 (465)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 432 (465)
...|+..+|+..|.+++...|+.+.++..|+..+.+
T Consensus 197 ~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 666666666666666666555555555555555543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.32 E-value=0.00061 Score=57.45 Aligned_cols=152 Identities=11% Similarity=0.114 Sum_probs=95.1
Q ss_pred HHHHhccCCcchhhhHHHHHHHccCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhhH
Q 012360 8 HVTKTALDSDIYVGNSLIHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYNDFSDSGEVLILFKQLIFEGIVADKITL 87 (465)
Q Consensus 8 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 87 (465)
++...=-.||..--..+.+.|.+.|.++.|..+|..+ .-|..++..+.+.++++.|.+++.+. -+..+|
T Consensus 4 ~~e~fl~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~-----~d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~ 72 (336)
T d1b89a_ 4 ELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 72 (336)
T ss_dssp HHTTTTTCC----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHH
T ss_pred hHHHHHcCCCcCCHHHHHHHHHHCCCHHHHHHHHHhC-----CCHHHHHHHHHhhccHHHHHHHHHHc------CCHHHH
Confidence 3444434567667777888888999999999999865 56788889999999999998887654 245678
Q ss_pred HHHHHHhcchhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh-C-CCCCchhHHHHHHHHHhcC
Q 012360 88 VILFSACARLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM-G-SRRNIVSLNILINGYIDME 165 (465)
Q Consensus 88 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~ 165 (465)
..+...|........+ .+.......+......++..|-..|.+++...+++.. + ..++...++.++..|++.+
T Consensus 73 k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 73 KEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC
Confidence 8888888766554432 2222233344555567889999999999999999976 3 3556667888888888865
Q ss_pred ChHHHHHHHHH
Q 012360 166 LVDLAREVFDE 176 (465)
Q Consensus 166 ~~~~a~~~~~~ 176 (465)
. ++..+.++.
T Consensus 148 ~-~kl~e~l~~ 157 (336)
T d1b89a_ 148 P-QKMREHLEL 157 (336)
T ss_dssp H-HHHHHHHHH
T ss_pred h-HHHHHHHHh
Confidence 4 344444443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.32 E-value=3.2e-06 Score=65.11 Aligned_cols=122 Identities=16% Similarity=0.098 Sum_probs=86.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCCh
Q 012360 323 SVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEF 402 (465)
Q Consensus 323 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 402 (465)
.........|++++|.+.|.+...-+.-.+-... ..+.+ +...-..+. ......+..++..+...|++
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~---------~~~~w--~~~~r~~l~-~~~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL---------RDFQF--VEPFATALV-EDKVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG---------TTSTT--HHHHHHHHH-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccccccC---------cchHH--HHHHHHHHH-HHHHHHHHHHHHHHHHCCCc
Confidence 3445677889999999999998853211110000 00000 000000010 11234677889999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH-----HhcCCCCCC
Q 012360 403 DLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMK-----ELQTRKKPG 456 (465)
Q Consensus 403 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~ 456 (465)
++|+..++++++.+|.+...|..++.+|.+.|++++|++.|+++. +.|+.|.+.
T Consensus 84 ~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 84 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 999999999999999999999999999999999999999999874 468888763
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.31 E-value=2.9e-06 Score=63.74 Aligned_cols=110 Identities=11% Similarity=0.002 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHH
Q 012360 320 TFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT---IEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSAC 396 (465)
Q Consensus 320 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 396 (465)
.+..-...+.+.|++.+|+..|+++.......+. ....... .. ....+|..+..+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~-----------------~~----~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK-----------------KN----IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHH-----------------HH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhh-----------------hh----HHHHHHhhHHHHH
Confidence 3445556677788888888888877642111111 0000000 00 0123677899999
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 397 ITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
.+.|++++|++.++++++.+|.+..+|..++.++...|++++|...|++..+..
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999887664
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.27 E-value=1.6e-06 Score=66.50 Aligned_cols=66 Identities=5% Similarity=0.040 Sum_probs=60.9
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 385 KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
....|..+..++.+.|++++|+..++++++++|.++.+|..++.++...|++++|...+++..+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 445678888999999999999999999999999999999999999999999999999999887753
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.19 E-value=3.6e-06 Score=64.41 Aligned_cols=63 Identities=8% Similarity=0.132 Sum_probs=58.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 387 ISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
.+|..+..+|.+.|++++|+..++++++++|.+..+|..++.++...|++++|...++++.+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356778889999999999999999999999999999999999999999999999999988764
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.17 E-value=6.3e-06 Score=57.98 Aligned_cols=88 Identities=11% Similarity=-0.051 Sum_probs=53.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHh
Q 012360 288 TMIEGLANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR 366 (465)
Q Consensus 288 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 366 (465)
.+...+.+.|++++|...|++..+. .| +...|..+..++.+.|++++|+..|+++.+. .+.+...+..+...|..
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHH
Confidence 3445556666666666666666655 33 3556666666666666666666666666632 23345566666666666
Q ss_pred cCCHHHHHHHHHh
Q 012360 367 AGLLYQAEEFIKI 379 (465)
Q Consensus 367 ~g~~~~A~~~~~~ 379 (465)
.|++++|.+.+++
T Consensus 97 ~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 97 EHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 6666666666654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=1.7e-05 Score=57.31 Aligned_cols=93 Identities=4% Similarity=-0.006 Sum_probs=51.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-cc-------chHHHHHH
Q 012360 324 VLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KF-------ISYKALLS 394 (465)
Q Consensus 324 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~-------~~~~~l~~ 394 (465)
+...+...|++++|+..|.++.+. .+.+...+..+..+|.+.|++++|...++++.. .| +. .+|..+..
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 444455555555555555555532 122344555555555555555555555554332 11 11 24455666
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCC
Q 012360 395 ACITYSEFDLGKKVANNMMKLGNQ 418 (465)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~~p~ 418 (465)
.+...+++++|++.|++.+...|.
T Consensus 88 ~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCC
Confidence 677777888888888888776654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=8.6e-06 Score=55.21 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=57.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCC----C----C-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHH
Q 012360 354 IEHFVCLVDLLSRAGLLYQAEEFIKIMPA----E----D-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYV 424 (465)
Q Consensus 354 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 424 (465)
...+..+...+.+.|++++|...|++... . + ...++..+..++.+.|++++|+..++++++++|+++.++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 33445666677777777777777765422 1 1 2356888999999999999999999999999999998888
Q ss_pred HHHHH
Q 012360 425 LLSNF 429 (465)
Q Consensus 425 ~l~~~ 429 (465)
.+...
T Consensus 85 Nl~~~ 89 (95)
T d1tjca_ 85 NLKYF 89 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.01 E-value=3.2e-06 Score=62.70 Aligned_cols=126 Identities=10% Similarity=0.005 Sum_probs=67.9
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHhhcCCCCCCChhhHHHHHH
Q 012360 294 ANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHS----------GLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362 (465)
Q Consensus 294 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 362 (465)
-+.+.+++|...|+...+. .| +...+..+..++... +.+++|+..|+++.+. -+.+...|..+..
T Consensus 8 ~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHHhhHHH
Confidence 3445566666666666655 33 344555555555433 2234455555555431 1223444444444
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHH
Q 012360 363 LLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEA 442 (465)
Q Consensus 363 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 442 (465)
+|...|+.. ++. ....+.+++|.+.|+++++++|++...+..|.... .|..+
T Consensus 84 ~y~~~g~~~------------~~~---------~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka~~~ 135 (145)
T d1zu2a1 84 AYTSFAFLT------------PDE---------TEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KAPQL 135 (145)
T ss_dssp HHHHHHHHC------------CCH---------HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------THHHH
T ss_pred HHHHcccch------------hhH---------HHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-------HHHHH
Confidence 444333211 000 00123468899999999999999988666666554 45555
Q ss_pred HHHHHHhcC
Q 012360 443 RRNMKELQT 451 (465)
Q Consensus 443 ~~~~~~~~~ 451 (465)
+.++.+.|+
T Consensus 136 ~~e~~k~~~ 144 (145)
T d1zu2a1 136 HAEAYKQGL 144 (145)
T ss_dssp HHHHHHSSS
T ss_pred HHHHHHHhc
Confidence 555555443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=2e-06 Score=78.62 Aligned_cols=166 Identities=9% Similarity=-0.052 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHH--hccchhhHhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 012360 198 PEEALELFKKMIDEGVTPDEEVMVSVLSA--CSSLSNLQYGRLVHRFILQNNITQDAFVKTALIDMYSKCGSLEEALVTF 275 (465)
Q Consensus 198 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 275 (465)
+..+.+.++...+....++.......+.. ....+.++.+...+....+.. +++...+..+...+.+.|+.++|...+
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~ 143 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQ 143 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------C
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHH
Confidence 34555666665554333333222222111 122344444444444333322 234556667777778888888887776
Q ss_pred hcCCCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC
Q 012360 276 YKTDCKDV-VTWTTMIEGLANYGLGNEALRVFYQMERKGIKPN-EATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT 353 (465)
Q Consensus 276 ~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 353 (465)
.....++. .++..+...+...+++++|...|.+..+. .|+ ...|+.+...+...|+..+|...|.+.... .+|-
T Consensus 144 ~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~--~~~~ 219 (497)
T d1ya0a1 144 SSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV--KFPF 219 (497)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SBCC
T ss_pred HHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCC
Confidence 65444332 36667788888899999999999988876 554 478889999999999999999999988853 3567
Q ss_pred hhhHHHHHHHHHhcC
Q 012360 354 IEHFVCLVDLLSRAG 368 (465)
Q Consensus 354 ~~~~~~l~~~~~~~g 368 (465)
...+..|...+.+..
T Consensus 220 ~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 220 PAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 777888877776543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.86 E-value=6.3e-06 Score=61.04 Aligned_cols=97 Identities=7% Similarity=-0.051 Sum_probs=65.1
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHH
Q 012360 329 RHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKV 408 (465)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 408 (465)
-+.+.+++|+..|+.+.+. .|.+...+..+..++...+++..+.+ ..+.+++|+..
T Consensus 8 ~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e----------------------~~~~~~~Ai~~ 63 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISD----------------------AKQMIQEAITK 63 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHH----------------------HHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhH----------------------HHHHHHHHHHH
Confidence 3445556666666666532 23345555555555554444433332 23456889999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHhhcCC-----------hHHHHHHHHHHHHh
Q 012360 409 ANNMMKLGNQSHEAYVLLSNFYALEGH-----------WTEVAEARRNMKEL 449 (465)
Q Consensus 409 ~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~a~~~~~~~~~~ 449 (465)
|+++++++|+++.+|..++.+|...|+ +++|.+.|++..+.
T Consensus 64 ~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 64 FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 999999999999999999999988764 57788888877654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.81 E-value=4.7e-05 Score=57.11 Aligned_cols=63 Identities=16% Similarity=0.044 Sum_probs=48.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHhCCC-----------CchhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 387 ISYKALLSACITYSEFDLGKKVANNMMKLGNQ-----------SHEAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
.+|+.+..+|...|++++|.+.++++++..|. ...++..++.+|...|++++|...|++..+.
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35777888888888888888888888875321 1225778899999999999999999887653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.74 E-value=4.9e-05 Score=62.30 Aligned_cols=126 Identities=10% Similarity=0.050 Sum_probs=88.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHhcCCH
Q 012360 293 LANYGLGNEALRVFYQMERKGIKP-NEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPT-IEHFVCLVDLLSRAGLL 370 (465)
Q Consensus 293 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 370 (465)
..+.|++++|+..+++.++. .| |...+..+...++..|++++|...++...+. .|+ ...+..+...+...+..
T Consensus 6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~ 80 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQAR 80 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhcccc
Confidence 34678999999999999887 55 5678889999999999999999999999853 453 44555555555544444
Q ss_pred HHHHHHHHhC--CCCC-ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhH
Q 012360 371 YQAEEFIKIM--PAED-KFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAY 423 (465)
Q Consensus 371 ~~A~~~~~~~--~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 423 (465)
+++..-.... ..+| +...+......+...|+.++|.+.++++.+..|..+..+
T Consensus 81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 4443322221 1122 223344455667788999999999999999998877644
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.64 E-value=5e-05 Score=56.96 Aligned_cols=95 Identities=9% Similarity=-0.071 Sum_probs=64.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCC----------hhhHHHHHHHHHhcCCHHHHHHHHHhCCC--------CC--
Q 012360 325 LAACRHSGLITEGCQLFRRMGGVYRVQPT----------IEHFVCLVDLLSRAGLLYQAEEFIKIMPA--------ED-- 384 (465)
Q Consensus 325 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~-- 384 (465)
...+...|++++|+..|++..+...-.|+ ...|+.+..+|...|++++|.+.+++... .+
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 34455667777777777777642111121 34567778888888888888877765431 11
Q ss_pred ---ccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 012360 385 ---KFISYKALLSACITYSEFDLGKKVANNMMKLGNQS 419 (465)
Q Consensus 385 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 419 (465)
....+..+..+|...|++++|++.|++++++.|..
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 12356778899999999999999999999876543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=0.00011 Score=49.52 Aligned_cols=62 Identities=11% Similarity=0.042 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCC-------chhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 389 YKALLSACITYSEFDLGKKVANNMMKLGNQS-------HEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
+-.++..+.+.|++++|+..|+++++..|.+ ..++..|+.++.+.|++++|...++++.+..
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 4467888999999999999999999875443 3468999999999999999999999987764
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.54 E-value=0.0019 Score=49.07 Aligned_cols=121 Identities=10% Similarity=0.054 Sum_probs=75.0
Q ss_pred HHHHHHhCCChHHHHHHHHhh-CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHH
Q 012360 125 LLLMYAKCKEMDEALRLFDEM-GSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALE 203 (465)
Q Consensus 125 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 203 (465)
........|++++|.+.|.+. ..-+.... ......+-+...-..+.......+..+...+.+.|++++|+.
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l--------~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~ 88 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVL--------DDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA 88 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTT--------GGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCccccc--------ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence 334566778888888887776 21111100 000000111111122223344567777888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHH-----cCCCCChhH
Q 012360 204 LFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQ-----NNITQDAFV 254 (465)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 254 (465)
.++++++.. +-+...|..++.++...|+.++|...|+++.. .|+.|+..+
T Consensus 89 ~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 89 ELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 888888763 34677788888888888888888888887643 577777654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.51 E-value=2.9e-05 Score=63.70 Aligned_cols=121 Identities=14% Similarity=0.074 Sum_probs=85.9
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-ccchHHHHHHHHHhcCChHHH
Q 012360 328 CRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPA-ED-KFISYKALLSACITYSEFDLG 405 (465)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a 405 (465)
..+.|++++|+..+++..+ ..+.+...+..+...|+..|++++|.+.++.... .| +...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 4567999999999999996 3355789999999999999999999999998754 44 344555555555444444433
Q ss_pred HHHHHHHHHhC-CCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012360 406 KKVANNMMKLG-NQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQ 450 (465)
Q Consensus 406 ~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 450 (465)
..-........ |++...+...+..+...|+.++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 32222211122 4444455666788999999999999999887653
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.31 E-value=0.044 Score=48.39 Aligned_cols=325 Identities=11% Similarity=0.000 Sum_probs=159.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHHhCCcc-chhhHHHHHHHHHhCCC
Q 012360 56 MSIYNDFSDSGEVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATKVGLEY-MLNMENALLLMYAKCKE 134 (465)
Q Consensus 56 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 134 (465)
+.-..+.|+...+..+...+... | ...|...-..-...++.. ..++..-+.+..-.| ....-...+..+.+.++
T Consensus 13 a~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~-~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~ 87 (450)
T d1qsaa1 13 IKQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQP-AVTVTNFVRANPTLPPARTLQSRFVNELARRED 87 (450)
T ss_dssp HHHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCC-HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCC-HHHHHHHHHHCCCChhHHHHHHHHHHHHHhccC
Confidence 34456677887777777666321 2 233332222222222221 123333333322122 22233444566677777
Q ss_pred hHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 012360 135 MDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVT 214 (465)
Q Consensus 135 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 214 (465)
++.....+.. .+++...-.....+....|+.++|...+..+-.. ..-..+.+..++..+.+.|.
T Consensus 88 w~~~~~~~~~--~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~-------------~~~~p~~c~~l~~~~~~~~~- 151 (450)
T d1qsaa1 88 WRGLLAFSPE--KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT-------------GKSQPNACDKLFSVWRASGK- 151 (450)
T ss_dssp HHHHHHHCCS--CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC-------------SSCCCTHHHHHHHHHHHTTC-
T ss_pred HHHHHHhccC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------------CCCCchHHHHHHHHHHhcCC-
Confidence 7665544322 1223333445566666677776666655444110 01123333444444444332
Q ss_pred CCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHH
Q 012360 215 PDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNITQD-AFVKTALIDMYSKCGSLEEALVTFYKTDCKDVVTWTTMIEGL 293 (465)
Q Consensus 215 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 293 (465)
++...+-.-+......|+...|..+...+ +++ .......+..... ...+........ .+......+..++
T Consensus 152 lt~~~~~~R~~~~l~~~~~~~a~~l~~~l-----~~~~~~~~~a~~~l~~~---p~~~~~~~~~~~-~~~~~~~~~~~~l 222 (450)
T d1qsaa1 152 QDPLAYLERIRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANN---PNTVLTFARTTG-ATDFTRQMAAVAF 222 (450)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHC---GGGHHHHHHHSC-CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCChhhHHHHHhhC-----ChhHHHHHHHHHHHHhC---hHhHHHHHhcCC-CChhhhHHHHHHH
Confidence 23333333333444456666666554432 222 2233333333322 222222222222 2333333333333
Q ss_pred HH--cCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhc
Q 012360 294 AN--YGLGNEALRVFYQMERKGIKPNEATFV----SVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRA 367 (465)
Q Consensus 294 ~~--~~~~~~a~~~~~~m~~~g~~p~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 367 (465)
.+ ..+.+.|...+....... ..+..... .+.......+..+.+..++...... ..+.......+......
T Consensus 223 ~rla~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~ 298 (450)
T d1qsaa1 223 ASVARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGT 298 (450)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHH
T ss_pred HHHhccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHHHHHHHc
Confidence 32 357788888888776542 22222222 2223333456677788877776643 34444445555566677
Q ss_pred CCHHHHHHHHHhCCCCCccch--HHHHHHHHHhcCChHHHHHHHHHHHH
Q 012360 368 GLLYQAEEFIKIMPAEDKFIS--YKALLSACITYSEFDLGKKVANNMMK 414 (465)
Q Consensus 368 g~~~~A~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (465)
+++..+...++.+...+.... .-=+++++...|+.+.|...|..+..
T Consensus 299 ~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 889999999988876442211 12255777788999999999888764
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.52 E-value=0.012 Score=41.84 Aligned_cols=80 Identities=5% Similarity=-0.074 Sum_probs=37.2
Q ss_pred CHHHHHHHHHhCCCCCccchHHHHHHHHHh----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhh----cCChHHHH
Q 012360 369 LLYQAEEFIKIMPAEDKFISYKALLSACIT----YSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYAL----EGHWTEVA 440 (465)
Q Consensus 369 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~ 440 (465)
+.++|.+++++.....++.....|...|.. ..+.++|.+.|+++.+.+ ++.....|+..|.. ..+.++|.
T Consensus 38 ~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~ 115 (133)
T d1klxa_ 38 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAV 115 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHH
Confidence 334444444443333333333334333332 234556666666655544 22234455555544 33555566
Q ss_pred HHHHHHHHhc
Q 012360 441 EARRNMKELQ 450 (465)
Q Consensus 441 ~~~~~~~~~~ 450 (465)
+++++..+.|
T Consensus 116 ~~~~~Aa~~G 125 (133)
T d1klxa_ 116 KTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHCC
Confidence 6666554444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.39 E-value=0.019 Score=40.74 Aligned_cols=112 Identities=10% Similarity=-0.028 Sum_probs=78.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHh----cCCHHHH
Q 012360 298 LGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSR----AGLLYQA 373 (465)
Q Consensus 298 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 373 (465)
++++|.++|++..+.|.. .....|. .....+.++|..++++..+. + ++.....|...|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 567888888888777622 2222222 23456788888888888754 3 34455566666654 4568899
Q ss_pred HHHHHhCCCCCccchHHHHHHHHHh----cCChHHHHHHHHHHHHhCCC
Q 012360 374 EEFIKIMPAEDKFISYKALLSACIT----YSEFDLGKKVANNMMKLGNQ 418 (465)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~ 418 (465)
.++|++.....++.....|...|.. ..+.++|.+.|+++.+.+..
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 9999887766777777777777765 45889999999999887743
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.12 E-value=0.014 Score=40.24 Aligned_cols=70 Identities=10% Similarity=0.110 Sum_probs=41.0
Q ss_pred CChhhHHHHHHHHHhcCC---HHHHHHHHHhCCC-CC-c-cchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 012360 352 PTIEHFVCLVDLLSRAGL---LYQAEEFIKIMPA-ED-K-FISYKALLSACITYSEFDLGKKVANNMMKLGNQSHE 421 (465)
Q Consensus 352 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 421 (465)
++..+-.....++.+..+ .++++.+++++.. .| + ...+..|.-+|.+.|++++|.+.++++++.+|++..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q 108 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 108 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence 445555555555655443 3456666665542 22 2 234555666666777777777777777777776655
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.75 E-value=0.16 Score=34.57 Aligned_cols=141 Identities=9% Similarity=0.077 Sum_probs=99.6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHH
Q 012360 293 LANYGLGNEALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQ 372 (465)
Q Consensus 293 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 372 (465)
+.-.|..++..+++.+.... .+..-|+.++--....-+-+-..+.++.+-+-+.+.|-.. ...++.++...+
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~N-lk~vv~C~~~~n---- 83 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQN-LKSVVECGVINN---- 83 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSC-THHHHHHHHHTT----
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhc-HHHHHHHHHHhc----
Confidence 45568888888888887764 2556777777766777777888888888776544444222 123344444333
Q ss_pred HHHHHHhCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHHhcCC
Q 012360 373 AEEFIKIMPAEDKFISYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNMKELQTR 452 (465)
Q Consensus 373 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 452 (465)
.+....+..+..+...|+-+.-.++++.+.+.+..++.....++.+|.+.|...++-+++.+.=+.|++
T Consensus 84 -----------~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 84 -----------TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp -----------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred -----------chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 234455666777788888888888988888877777788889999999999999999999888777653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.87 E-value=0.088 Score=36.08 Aligned_cols=65 Identities=15% Similarity=0.079 Sum_probs=45.9
Q ss_pred ccchHHHHHHHHHhcC---ChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 012360 385 KFISYKALLSACITYS---EFDLGKKVANNMMKLGNQSH-EAYVLLSNFYALEGHWTEVAEARRNMKEL 449 (465)
Q Consensus 385 ~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 449 (465)
...+--...+++.+.. +.++++.+++++.+.+|.+. ..+..|+.+|.+.|++++|+++++++.+.
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 3445555666666543 45678888888887777654 56778888888888888888888877654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.83 E-value=1.1 Score=38.92 Aligned_cols=389 Identities=10% Similarity=-0.018 Sum_probs=194.1
Q ss_pred HHHHHccCChHHHHHHhccCCCCCcccHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCchhhH----HHHHHHhcchh
Q 012360 25 IHFYGRMALFTDARVLFDKMPFRDVGSWNTLMSIYND--FSDSGEVLILFKQLIFEGIVADKITL----VILFSACARLE 98 (465)
Q Consensus 25 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~----~~l~~~~~~~~ 98 (465)
+.-..+.|+...+.++...+..--...|-..-..-.. ....++...++++ -|+...- ...+..+.+.+
T Consensus 13 a~~a~~~~~~~~~~~~~~~L~dypL~pYl~~~~l~~~~~~~~~~~i~~Fl~~------~p~~P~~~~lr~~~l~~L~~~~ 86 (450)
T d1qsaa1 13 IKQAWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRA------NPTLPPARTLQSRFVNELARRE 86 (450)
T ss_dssp HHHHHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHhhhcCCCCHHHHHHHHHHhccccCCHHHHHHHHHH------CCCChhHHHHHHHHHHHHHhcc
Confidence 3445667888888888888853213333322222112 2333433333332 2333221 22344555566
Q ss_pred hhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhh--CCCCCchhHHHHHHHHHh-------------
Q 012360 99 KLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEM--GSRRNIVSLNILINGYID------------- 163 (465)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~------------- 163 (465)
+++.....+. ..+.+...-.....+....|+.+.|...+..+ .-......+..+...+..
T Consensus 87 ~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~ 161 (450)
T d1qsaa1 87 DWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERI 161 (450)
T ss_dssp CHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred CHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 6554332221 12334444456677777888888888877766 212333344444444443
Q ss_pred -----cCChHHHHHHHHHhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc--chhhHhH
Q 012360 164 -----MELVDLAREVFDEIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSS--LSNLQYG 236 (465)
Q Consensus 164 -----~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a 236 (465)
.|+...|..+...+...........+.... +...+..... . ..++......+..++.+ ..+.+.+
T Consensus 162 ~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~---~p~~~~~~~~---~--~~~~~~~~~~~~~~l~rla~~d~~~a 233 (450)
T d1qsaa1 162 RLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFAR---T--TGATDFTRQMAAVAFASVARQDAENA 233 (450)
T ss_dssp HHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHH---H--SCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHh---ChHhHHHHHh---c--CCCChhhhHHHHHHHHHHhccChhHH
Confidence 344444444444333322223333333221 1222222111 1 12222222233333322 3456667
Q ss_pred HHHHHHHHHcCCCCChhHHHHHH----HHHHhcCCHHHHHHHHhcCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 012360 237 RLVHRFILQNNITQDAFVKTALI----DMYSKCGSLEEALVTFYKTD--CKDVVTWTTMIEGLANYGLGNEALRVFYQME 310 (465)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 310 (465)
...+........ .+..-...+- ..+...+..+.+...+.... ..+.....-.+......+++..+...+..|.
T Consensus 234 ~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~ 312 (450)
T d1qsaa1 234 RLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLP 312 (450)
T ss_dssp HHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSC
T ss_pred HHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHHHHHHhcC
Confidence 777776655432 2222222222 22223455566666554432 2233333344455566778888888887764
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCccc---
Q 012360 311 RKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVDLLSRAGLLYQAEEFIKIMPAEDKFI--- 387 (465)
Q Consensus 311 ~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--- 387 (465)
.. .........-+.+++...|+.+.|..+|..+.. .++ .|.-|. ..+.|..-..- .......+...
T Consensus 313 ~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LA--a~~Lg~~~~~~--~~~~~~~~~~~~~~ 381 (450)
T d1qsaa1 313 ME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVA--AQRIGEEYELK--IDKAPQNVDSALTQ 381 (450)
T ss_dssp TT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHH--HHHTTCCCCCC--CCCCCSCCCCHHHH
T ss_pred cc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHH--HHHcCCCCCCC--cCCCCccHHHhhhc
Confidence 32 112234445677888888888888888888863 133 333332 22333210000 00000011110
Q ss_pred -hHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 012360 388 -SYKALLSACITYSEFDLGKKVANNMMKLGNQSHEAYVLLSNFYALEGHWTEVAEARRNM 446 (465)
Q Consensus 388 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 446 (465)
.-..-+..+...|+...|...+..+.... ++.-...++....+.|.++.|+....+.
T Consensus 382 ~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 382 GPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp SHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 01123456778999999999999887643 3444778899999999999998877654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.17 E-value=0.49 Score=32.09 Aligned_cols=139 Identities=9% Similarity=-0.019 Sum_probs=82.3
Q ss_pred chhhhhhhhHHHHHHHHhCCccchhhHHHHHHHHHhCCChHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 012360 96 RLEKLHYGKTVHCYATKVGLEYMLNMENALLLMYAKCKEMDEALRLFDEMGSRRNIVSLNILINGYIDMELVDLAREVFD 175 (465)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 175 (465)
..|..++..+++.+..+.. +..-||.++.-....-+-+...++++.+|.--|... .+++......+-
T Consensus 14 ldG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~----------C~Nlk~vv~C~~ 80 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK----------CQNLKSVVECGV 80 (161)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG----------CSCTHHHHHHHH
T ss_pred HhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCchh----------hhcHHHHHHHHH
Confidence 3456666666666665532 334445555555555556666666666643333221 222332222222
Q ss_pred HhhcCChHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccchhhHhHHHHHHHHHHcCCC
Q 012360 176 EIVDKDIVLWRSMMHGCVKAKQPEEALELFKKMIDEGVTPDEEVMVSVLSACSSLSNLQYGRLVHRFILQNNIT 249 (465)
Q Consensus 176 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 249 (465)
.+- .+....+..++...++|+-++-.++++.+.+. -+|++.....+..+|-+.|+..++.+++.+.-+.|..
T Consensus 81 ~~n-~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 81 INN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred Hhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 221 13334555667778888888888888887664 4667777777888888888888888888888777753
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.28 E-value=1.5 Score=28.02 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHhcchhhhhhhhHHHHHHHH
Q 012360 67 EVLILFKQLIFEGIVADKITLVILFSACARLEKLHYGKTVHCYATK 112 (465)
Q Consensus 67 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (465)
++.+-++.+...++.|++....+.+++|-+.+++..|.++++-...
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444445555555555555555555555555555555443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.19 E-value=0.85 Score=29.21 Aligned_cols=60 Identities=13% Similarity=0.236 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCChhhHHHHHH
Q 012360 301 EALRVFYQMERKGIKPNEATFVSVLAACRHSGLITEGCQLFRRMGGVYRVQPTIEHFVCLVD 362 (465)
Q Consensus 301 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 362 (465)
++.+-+..+....+-|++....+.+++|.+.+++..|.++++-++.+ ..++...|..+++
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilq 83 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 83 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence 45556666666677888888888888888888888888888888753 3334555655543
|