Citrus Sinensis ID: 012426
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 464 | 2.2.26 [Sep-21-2011] | |||||||
| O48593 | 567 | Asparagine--tRNA ligase, | yes | no | 0.967 | 0.791 | 0.830 | 0.0 | |
| Q6MEC9 | 467 | Asparagine--tRNA ligase O | yes | no | 0.920 | 0.914 | 0.586 | 1e-149 | |
| A3DBI2 | 464 | Asparagine--tRNA ligase O | yes | no | 0.885 | 0.885 | 0.569 | 1e-143 | |
| Q24MK1 | 463 | Asparagine--tRNA ligase O | yes | no | 0.866 | 0.868 | 0.578 | 1e-141 | |
| A0PY64 | 463 | Asparagine--tRNA ligase O | yes | no | 0.877 | 0.879 | 0.559 | 1e-139 | |
| A5HZE1 | 463 | Asparagine--tRNA ligase O | yes | no | 0.905 | 0.907 | 0.539 | 1e-138 | |
| A7FRK8 | 463 | Asparagine--tRNA ligase O | yes | no | 0.905 | 0.907 | 0.539 | 1e-138 | |
| A7GB01 | 463 | Asparagine--tRNA ligase O | yes | no | 0.905 | 0.907 | 0.535 | 1e-138 | |
| Q899M9 | 463 | Asparagine--tRNA ligase O | yes | no | 0.915 | 0.917 | 0.532 | 1e-138 | |
| Q74E08 | 461 | Asparagine--tRNA ligase O | yes | no | 0.907 | 0.913 | 0.540 | 1e-138 |
| >sp|O48593|SYNO_ARATH Asparagine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SYNO PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/449 (83%), Positives = 413/449 (91%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
GSKVGEFRKKL+I +VKGG +EGL RVG + + GWVRTLR+QSSVTFIE+NDGSCLSN
Sbjct: 81 FGSKVGEFRKKLRIAEVKGGADEGLSRVGQSLNIMGWVRTLRSQSSVTFIEINDGSCLSN 140
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+QCVMTSDAEGYDQV+SG I TGAS+ +QG +V SQG+KQKVELKV KI++VG+ D SYP
Sbjct: 141 LQCVMTSDAEGYDQVESGSILTGASVSVQGTIVASQGTKQKVELKVEKIIVVGECDSSYP 200
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRN LAYATHKFFQE+GF+W++SPIITASDC
Sbjct: 201 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFVWVASPIITASDC 260
Query: 181 EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYA 240
EGAGEQFCVTTLIPSS E ++ +DAIPKTK GLIDWSQDFF KPAFLTVSGQLN ETYA
Sbjct: 261 EGAGEQFCVTTLIPSSHENTDTSIDAIPKTKGGLIDWSQDFFGKPAFLTVSGQLNGETYA 320
Query: 241 TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 300
TALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV+Y+LDN
Sbjct: 321 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMACATAYLQYVVKYVLDN 380
Query: 301 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 360
CKEDM+FF+TWIEKGII RLS VAE++F+QL YTDAIE+L+KA KKF+F VKWG DLQSE
Sbjct: 381 CKEDMEFFDTWIEKGIIRRLSDVAEKEFLQLGYTDAIEILLKANKKFDFPVKWGLDLQSE 440
Query: 361 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREER 420
HERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPRIGELIGGSQREER
Sbjct: 441 HERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRIGELIGGSQREER 500
Query: 421 LEYLEGRLDELKLNRDSYWWYLDLRHYGS 449
LE LE RLDELKLN++SYWWYLDLR YGS
Sbjct: 501 LEVLEARLDELKLNKESYWWYLDLRRYGS 529
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Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 2 |
| >sp|Q6MEC9|SYN_PARUW Asparagine--tRNA ligase OS=Protochlamydia amoebophila (strain UWE25) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 530 bits (1365), Expect = e-149, Method: Compositional matrix adjust.
Identities = 258/440 (58%), Positives = 325/440 (73%), Gaps = 13/440 (2%)
Query: 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE 70
+ KI ++G E +G I + GWVRT+R Q + TFIE+NDGS LSN Q + T D
Sbjct: 2 RTKIKSLRGTTPEVRALIGHDITLKGWVRTVRNQKTFTFIEINDGSTLSNFQIIATPDIA 61
Query: 71 GYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS-YPIQKKRVSRE 129
GYDQ+ + L +TG S+ G +V S G +Q +E++ I ++GK DP Y +QKKR + E
Sbjct: 62 GYDQLINQL-STGVSVSAIGTIVESPGKEQNLEMQATAITIIGKCDPEVYLLQKKRHTFE 120
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
FLR+ AHLRPRTNT GAV RVRNALA+ATH+FFQ+ GF++I +PIIT SDCEGAG+ F V
Sbjct: 121 FLRSIAHLRPRTNTIGAVTRVRNALAFATHQFFQKRGFLYIHTPIITGSDCEGAGKMFQV 180
Query: 190 TTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTF 249
TTL +P +T +G +D++QDFF KP +LTVSGQLN E YA ALS+VYTF
Sbjct: 181 TTL------DQNNPA----RTPEGRVDYTQDFFGKPTYLTVSGQLNGEIYACALSDVYTF 230
Query: 250 GPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFN 309
GPTFRAENSNTSRHLAEFWMIEPE+AFADL D+M CA YL+Y+++Y+LDNC+EDM+FFN
Sbjct: 231 GPTFRAENSNTSRHLAEFWMIEPEMAFADLNDNMDCAEDYLKYILKYVLDNCQEDMEFFN 290
Query: 310 TWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEA 369
+ +I RL V F + SYT A+ +L KA KKFE+ VKWG DLQSEHER+L EE
Sbjct: 291 KHVATDLISRLEHVINTSFERASYTYAVRILEKADKKFEYPVKWGLDLQSEHERFLAEEF 350
Query: 370 FGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD 429
FG PVI++DYPK+IKAFYMR N+D +TVAAMD+LVP++GE+IGGSQREERL LE +L
Sbjct: 351 FGK-PVILTDYPKDIKAFYMRTNEDNKTVAAMDVLVPKVGEIIGGSQREERLSVLESKLK 409
Query: 430 ELKLNRDSYWWYLDLRHYGS 449
E L + YWWYL+LR +GS
Sbjct: 410 EFNLPAEEYWWYLELRKFGS 429
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Protochlamydia amoebophila (strain UWE25) (taxid: 264201) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|A3DBI2|SYN_CLOTH Asparagine--tRNA ligase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 508 bits (1309), Expect = e-143, Method: Compositional matrix adjust.
Identities = 242/425 (56%), Positives = 311/425 (73%), Gaps = 14/425 (3%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTS-DAEGYDQVKSGLITTGA 84
D VG IVVAGWVRT+R + FIE+NDGS N+Q V + + ++ ++ G+
Sbjct: 15 DYVGKEIVVAGWVRTVRDSKAFGFIELNDGSFFKNLQIVFEEKNLPNFKEIAK--LSVGS 72
Query: 85 SIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTF 144
+I G +V + G+KQ ELK KI + G S P YP+QKKR S E+LRT AHLRPRTNTF
Sbjct: 73 AIIAHGELVETPGAKQPFELKATKIEIEGASTPDYPLQKKRHSFEYLRTIAHLRPRTNTF 132
Query: 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPV 204
AV RVR+ LAYA HKFFQE GF+++ +PIIT SD EGAG+ F VTTL +
Sbjct: 133 SAVFRVRSLLAYAIHKFFQERGFVYVHTPIITGSDAEGAGQMFKVTTL----------DI 182
Query: 205 DAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHL 264
+ P+ +DG +D+S+DFF++ LTVSGQL ETY+ A N+YTFGPTFRAENSNT+RH
Sbjct: 183 NNPPRKEDGTVDFSKDFFDRETNLTVSGQLEGETYSMAFRNIYTFGPTFRAENSNTARHA 242
Query: 265 AEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA 324
AEFWM+EPE+AFADL+DDM A L+Y++ Y L+N E+M+FFN +I+ ++DRL+ +
Sbjct: 243 AEFWMVEPEIAFADLEDDMELAEDMLKYIINYCLENAPEEMEFFNNFIDNTLLDRLNNIV 302
Query: 325 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEI 384
DF ++YT+AI++L KA +KFE+ VKWG DLQ+EHERYLTE+ F PV V+DYPK+I
Sbjct: 303 SSDFAHVTYTEAIDILSKADQKFEYPVKWGNDLQTEHERYLTEKVFKK-PVFVTDYPKDI 361
Query: 385 KAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDL 444
KAFYMR NDD +TVAAMD+LVP +GE+IGGSQREERL+YLE R+ EL L + YWWYLDL
Sbjct: 362 KAFYMRLNDDNKTVAAMDLLVPGVGEIIGGSQREERLDYLENRMKELGLKMEDYWWYLDL 421
Query: 445 RHYGS 449
R YGS
Sbjct: 422 RRYGS 426
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Clostridium thermocellum (strain ATCC 27405 / DSM 1237) (taxid: 203119) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q24MK1|SYN_DESHY Asparagine--tRNA ligase OS=Desulfitobacterium hafniense (strain Y51) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 503 bits (1294), Expect = e-141, Method: Compositional matrix adjust.
Identities = 240/415 (57%), Positives = 308/415 (74%), Gaps = 13/415 (3%)
Query: 34 VAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVV 93
++GWVRTLR S FIE+NDGS +Q V D ++++ + TG+S+ I+G +V
Sbjct: 23 ISGWVRTLRVSKSFGFIEINDGSFFKGIQVVFEEDLNNFEEIAK--VATGSSLIIKGLLV 80
Query: 94 PSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNA 153
S G+KQ ELK I++ G YP+QKKR S E+LRT AHLRPRTNTF AV RVR+
Sbjct: 81 ESPGAKQPFELKAQSIMIEGACSGDYPLQKKRHSFEYLRTIAHLRPRTNTFAAVFRVRSL 140
Query: 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDG 213
+AYA HKFFQ+ GF++I +PIIT SD EGAGE F VTTL +DA+P+T++G
Sbjct: 141 VAYAIHKFFQDKGFVYIHTPIITGSDAEGAGEMFRVTTL----------DLDALPRTEEG 190
Query: 214 LIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPE 273
ID+++DFF K LTVSGQLNAETY A NVYTFGPTFRAENSNT+RH AEFWMIEPE
Sbjct: 191 RIDYAKDFFGKETNLTVSGQLNAETYCMAFRNVYTFGPTFRAENSNTARHAAEFWMIEPE 250
Query: 274 LAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSY 333
+AFADL+DDM A ++Y++ Y+L++ E+M FFN +++K + DRL + DF +L+Y
Sbjct: 251 IAFADLQDDMELAEEMMKYLISYVLEHAPEEMAFFNEFVDKTLFDRLDNIVNSDFGRLTY 310
Query: 334 TDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND 393
T+AIE+L K K++FEF V+WG DLQ+EHER+LTE+ F PV V DYPK+IKAFYMR ND
Sbjct: 311 TEAIEILQKEKERFEFPVEWGADLQTEHERFLTEQIFKK-PVFVVDYPKDIKAFYMRLND 369
Query: 394 DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYG 448
D +TVAAMD+LVP +GE+IGGSQREERL+YLE R+ EL L+++ Y WYLDLR YG
Sbjct: 370 DQKTVAAMDLLVPGVGEIIGGSQREERLDYLEKRMAELGLHKEDYSWYLDLRKYG 424
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Desulfitobacterium hafniense (strain Y51) (taxid: 138119) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|A0PY64|SYN_CLONN Asparagine--tRNA ligase OS=Clostridium novyi (strain NT) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 496 bits (1277), Expect = e-139, Method: Compositional matrix adjust.
Identities = 235/420 (55%), Positives = 310/420 (73%), Gaps = 13/420 (3%)
Query: 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88
G + ++GW+RTLRA + FIEVNDGS N+Q V ++ E + ++ I++ SI +
Sbjct: 18 GKEVKISGWIRTLRASNKFGFIEVNDGSFFKNIQVVFGAELENFKEISKYAISS--SISV 75
Query: 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVA 148
+G VV ++G+KQ E+ K+VL GKSD YP+QKKR + E+LR+ AHLRPR+N F AV
Sbjct: 76 EGEVVITEGAKQPFEIHAKKVVLEGKSDADYPLQKKRHTFEYLRSIAHLRPRSNAFSAVF 135
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIP 208
RVR+ AYA HKFFQ+ GF+++ +PIIT SDCEGAGE F VTTL E+P P
Sbjct: 136 RVRSLAAYAIHKFFQDQGFVYVHTPIITGSDCEGAGEMFRVTTL------DMENP----P 185
Query: 209 KTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFW 268
K + G +D+ +DFF K A LTVSGQL AE YA A NVYTFGPTFRAENSNT+RH +EFW
Sbjct: 186 KDEKGNVDYKEDFFGKQANLTVSGQLEAEIYALAFRNVYTFGPTFRAENSNTARHASEFW 245
Query: 269 MIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDF 328
MIEPE+AFA+LKD M A ++Y++ Y+ +N E+M+FFN +I+KG+++RL V DF
Sbjct: 246 MIEPEMAFAELKDYMDVAEQMVKYIINYVRENAPEEMEFFNKFIDKGLLERLDNVVNSDF 305
Query: 329 VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY 388
++SYT+A+E+L K+ +FE+ V+WG DLQ+EHERYLTE+ + PV V+DYPK+IKAFY
Sbjct: 306 ARISYTEAVEILQKSGAEFEYPVEWGIDLQTEHERYLTEQIY-KKPVFVTDYPKDIKAFY 364
Query: 389 MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYG 448
MR NDD +TVAA D+LVP IGE+IGGSQREERL+ LE R+ EL L ++ YWWYL+LR YG
Sbjct: 365 MRMNDDNKTVAAADLLVPGIGEIIGGSQREERLDILEARMAELGLEKEDYWWYLELRKYG 424
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Clostridium novyi (strain NT) (taxid: 386415) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|A5HZE1|SYN_CLOBH Asparagine--tRNA ligase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 493 bits (1269), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/441 (53%), Positives = 320/441 (72%), Gaps = 21/441 (4%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ + GWVRT+R + F+EVNDGS N+Q ++ S E + ++ I+T S+ ++G
Sbjct: 21 VKINGWVRTVRDSKNFAFVEVNDGSFFKNVQVILESSLENFKELCKMPIST--SVEVEGI 78
Query: 92 VVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVR 151
V P+ +KQ E+K +I + GKS YP+QKKR + E+LRT AHLRPR+N F AV RVR
Sbjct: 79 VQPTPNAKQPFEIKATRISIEGKSSTDYPLQKKRHTFEYLRTIAHLRPRSNAFSAVFRVR 138
Query: 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTK 211
+ AYA HKFFQE GF++ ++PIIT SDCEGAGE F +TT+ ++ IPKT+
Sbjct: 139 SLAAYAVHKFFQERGFVYTNTPIITGSDCEGAGEMFQLTTM----------DLNNIPKTE 188
Query: 212 DGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIE 271
+G ID+S+DFF PA LTVSGQL+AET+A A NVYTFGPTFRAENSNT+RH +EFWMIE
Sbjct: 189 EGKIDFSKDFFGSPANLTVSGQLSAETFALAFRNVYTFGPTFRAENSNTARHASEFWMIE 248
Query: 272 PELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQL 331
PE+AFA+L D + A +++V+ Y+++N E+M FFN++++KG+ DRL V DF ++
Sbjct: 249 PEMAFAELTDYLDNAEDMVKFVINYVMENAPEEMAFFNSFVDKGLFDRLDNVVNSDFKRI 308
Query: 332 SYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQ 391
+YT+A+ELL K+ KF++ V+WG DLQ+EHERYLTE+ F PV V+DYPK+IKAFYMR
Sbjct: 309 TYTEAVELLQKSGVKFDYEVEWGIDLQTEHERYLTEQIFKK-PVFVTDYPKDIKAFYMRL 367
Query: 392 NDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS-- 449
NDDG+TVAA D+LVP +GE+IGGSQREERL+ LE R++EL LN++ YWWYL+LR YG
Sbjct: 368 NDDGKTVAAADLLVPGVGEIIGGSQREERLDVLEKRMEELNLNKEDYWWYLELRKYGETK 427
Query: 450 ----GLVF--ILIKVTNFLNC 464
GL F IL+ +T N
Sbjct: 428 HSGYGLGFERILMYITGMTNI 448
|
Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) (taxid: 441771) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|A7FRK8|SYN_CLOB1 Asparagine--tRNA ligase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 493 bits (1269), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/441 (53%), Positives = 320/441 (72%), Gaps = 21/441 (4%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ + GWVRT+R + F+EVNDGS N+Q ++ S E + ++ I+T S+ ++G
Sbjct: 21 VKINGWVRTVRDSKNFAFVEVNDGSFFKNVQVILESSLENFKELCKMPIST--SVEVEGI 78
Query: 92 VVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVR 151
V P+ +KQ E+K +I + GKS YP+QKKR + E+LRT AHLRPR+N F AV RVR
Sbjct: 79 VQPTPNAKQPFEIKATRISIEGKSSTDYPLQKKRHTFEYLRTIAHLRPRSNAFSAVFRVR 138
Query: 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTK 211
+ AYA HKFFQE GF++ ++PIIT SDCEGAGE F +TT+ ++ IPKT+
Sbjct: 139 SLAAYAVHKFFQERGFVYTNTPIITGSDCEGAGEMFQLTTM----------DLNNIPKTE 188
Query: 212 DGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIE 271
+G ID+S+DFF PA LTVSGQL+AET+A A NVYTFGPTFRAENSNT+RH +EFWMIE
Sbjct: 189 EGKIDFSKDFFGSPANLTVSGQLSAETFALAFRNVYTFGPTFRAENSNTARHASEFWMIE 248
Query: 272 PELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQL 331
PE+AFA+L D + A +++V+ Y+++N E+M FFN++++KG+ DRL V DF ++
Sbjct: 249 PEMAFAELTDYLDNAEDMVKFVINYVMENAPEEMAFFNSFVDKGLFDRLDNVVNSDFKRI 308
Query: 332 SYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQ 391
+YT+A+ELL K+ KF++ V+WG DLQ+EHERYLTE+ F PV V+DYPK+IKAFYMR
Sbjct: 309 TYTEAVELLQKSGVKFDYEVEWGIDLQTEHERYLTEQIFKK-PVFVTDYPKDIKAFYMRL 367
Query: 392 NDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS-- 449
NDDG+TVAA D+LVP +GE+IGGSQREERL+ LE R++EL LN++ YWWYL+LR YG
Sbjct: 368 NDDGKTVAAADLLVPGVGEIIGGSQREERLDVLEKRMEELNLNKEDYWWYLELRKYGETK 427
Query: 450 ----GLVF--ILIKVTNFLNC 464
GL F IL+ +T N
Sbjct: 428 HSGYGLGFERILMYITGMTNI 448
|
Clostridium botulinum (strain ATCC 19397 / Type A) (taxid: 441770) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|A7GB01|SYN_CLOBL Asparagine--tRNA ligase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 493 bits (1268), Expect = e-138, Method: Compositional matrix adjust.
Identities = 236/441 (53%), Positives = 320/441 (72%), Gaps = 21/441 (4%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ + GWVRT+R + F+EVNDGS N+Q ++ S E + ++ I+T S+ ++G
Sbjct: 21 VKINGWVRTVRDSKNFAFVEVNDGSFFKNVQVILESSLENFKELCKMPIST--SVEVEGI 78
Query: 92 VVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVR 151
+ P+ +KQ E+K ++ + GKS YP+QKKR + E+LRT AHLRPR+N F AV RVR
Sbjct: 79 IQPTPNAKQPFEIKATRVSIEGKSSTDYPLQKKRHTFEYLRTIAHLRPRSNAFSAVFRVR 138
Query: 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTK 211
+ AYA HKFFQE GF++ ++PIIT SDCEGAGE F +TT+ ++ IPKT+
Sbjct: 139 SLAAYAVHKFFQERGFVYTNTPIITGSDCEGAGEMFQLTTM----------DLNNIPKTE 188
Query: 212 DGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIE 271
+G ID+S+DFF PA LTVSGQL+AET+A A NVYTFGPTFRAENSNT+RH +EFWMIE
Sbjct: 189 EGKIDFSKDFFGSPANLTVSGQLSAETFALAFRNVYTFGPTFRAENSNTARHASEFWMIE 248
Query: 272 PELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQL 331
PE+AFA+L D + A +++V+ Y+++N E+M FFN++++KG+ DRL V DF ++
Sbjct: 249 PEMAFAELTDYLDNAENMVKFVINYVMENAPEEMAFFNSFVDKGLFDRLDNVVNSDFKRI 308
Query: 332 SYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQ 391
+YT+A+ELL K+ KF++ V+WG DLQ+EHERYLTE+ F PV V+DYPK+IKAFYMR
Sbjct: 309 TYTEAVELLQKSGGKFDYEVEWGIDLQTEHERYLTEQIFKK-PVFVTDYPKDIKAFYMRL 367
Query: 392 NDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS-- 449
NDDG+TVAA D+LVP +GE+IGGSQREERL+ LE R++EL LN++ YWWYL+LR YG
Sbjct: 368 NDDGKTVAAADLLVPGVGEIIGGSQREERLDVLEKRMEELNLNKEDYWWYLELRKYGETK 427
Query: 450 ----GLVF--ILIKVTNFLNC 464
GL F IL+ +T N
Sbjct: 428 HSGYGLGFERILMYITGMTNI 448
|
Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) (taxid: 441772) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q899M9|SYN_CLOTE Asparagine--tRNA ligase OS=Clostridium tetani (strain Massachusetts / E88) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 492 bits (1267), Expect = e-138, Method: Compositional matrix adjust.
Identities = 235/441 (53%), Positives = 320/441 (72%), Gaps = 16/441 (3%)
Query: 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA 69
KK+ I + P + +++ IVVAGW+RT R + FIE+NDGS N+Q ++ ++
Sbjct: 2 KKISIKQLYREPEKFINK---DIVVAGWIRTERTSKNFGFIELNDGSFFKNLQIIIDTNL 58
Query: 70 EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE 129
+ +D+V + +SI ++G +V + +KQ E++ +K+ + G S YP+QKKR S E
Sbjct: 59 DNFDKVSK--LPISSSIVVEGKLVATPSAKQPFEVQASKVTVEGTSLQDYPLQKKRHSFE 116
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
FLR+ AHLRPR+NTF AV R+R+ AYA HKFFQE F+++ +PIITASDCEGAGE F V
Sbjct: 117 FLRSIAHLRPRSNTFSAVFRIRSLAAYAVHKFFQEKNFVYVHTPIITASDCEGAGEMFRV 176
Query: 190 TTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTF 249
TTL ++ IPK +G ID+SQDFF+K A LTVSGQL+AE+YA A NVYTF
Sbjct: 177 TTL----------DLNNIPKNDEGKIDFSQDFFDKDAKLTVSGQLSAESYALAFGNVYTF 226
Query: 250 GPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFN 309
GPTFRAENSNT+RH +EFWMIEPE+AFADL D M A ++Y++ Y+L+N E+M+FFN
Sbjct: 227 GPTFRAENSNTARHASEFWMIEPEMAFADLTDYMDVAEEMVKYIINYVLENAPEEMNFFN 286
Query: 310 TWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEA 369
++I+K + RL V +F +++YT+A++LL K+ +KF++ V+WG DLQ+EHERY+TE+
Sbjct: 287 SFIDKDLFKRLDNVVNSEFKRITYTEAVDLLQKSGEKFQYPVEWGIDLQTEHERYITEKI 346
Query: 370 FGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD 429
FG PV V+DYPK+IKAFYMR N+D +TVAA D+LVP +GE+IGGSQREERL+ LE R+
Sbjct: 347 FGK-PVFVTDYPKDIKAFYMRLNEDNKTVAAADLLVPGVGEIIGGSQREERLDVLEERMK 405
Query: 430 ELKLNRDSYWWYLDLRHYGSG 450
E LN YWWYL+LR YGS
Sbjct: 406 EFDLNEKDYWWYLELRKYGSA 426
|
Clostridium tetani (strain Massachusetts / E88) (taxid: 212717) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q74E08|SYN_GEOSL Asparagine--tRNA ligase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 491 bits (1265), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/440 (54%), Positives = 310/440 (70%), Gaps = 19/440 (4%)
Query: 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA 69
++++I ++ G G + ++V GWVRT R V F+ VNDGSCL+++Q V
Sbjct: 3 ERIRIREILAGTPAGTE-----VIVKGWVRTSRVGKGVAFLAVNDGSCLASLQVVAEPGL 57
Query: 70 EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE 129
Y +++ I TGA++ ++G V S + Q VEL K+V+VG +D YP+QKKR + E
Sbjct: 58 ANYHELRG--IGTGAAVAVRGIVAESPAAGQAVELHATKVVVVGGADEQYPLQKKRHTFE 115
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
+LRT AHLRPR+NTFGAV RVR++LA A H+FF E GF+++ +PIIT SDCEGAGE F V
Sbjct: 116 YLRTIAHLRPRSNTFGAVFRVRSSLAQAVHRFFAERGFLYVHTPIITTSDCEGAGELFRV 175
Query: 190 TTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTF 249
TTL PS+ P DG +D+SQDFF A LTVSGQL E +A A S++YTF
Sbjct: 176 TTLDPSA-----------PPMADGAVDFSQDFFAAQAGLTVSGQLEGELFAQAFSDIYTF 224
Query: 250 GPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFN 309
GPTFRAENSNT RH AEFWMIEPE+AFADL+DD A A + +Y+ R++LDNC EDM FFN
Sbjct: 225 GPTFRAENSNTPRHAAEFWMIEPEMAFADLRDDAALAEDFFRYLCRHVLDNCAEDMAFFN 284
Query: 310 TWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEA 369
+++G++ R+ VA F + Y AIE L +A FE+ V+WG DLQ+EHERYLTE+
Sbjct: 285 EHVDRGLLARVEQVAGSSFAMMEYGVAIEHLKRAAVPFEYPVEWGLDLQTEHERYLTEQV 344
Query: 370 FGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD 429
GG PV V +YP+EIKAFYMR+NDDGRTVAAMD+LVP++GE+IGGSQREER + LE R+
Sbjct: 345 VGG-PVFVVNYPQEIKAFYMRRNDDGRTVAAMDLLVPKVGEIIGGSQREERYDLLESRMR 403
Query: 430 ELKLNRDSYWWYLDLRHYGS 449
E + +S WWYLD R +GS
Sbjct: 404 EGGIAPESLWWYLDSRRWGS 423
|
Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) (taxid: 243231) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 464 | ||||||
| 224093120 | 578 | predicted protein [Populus trichocarpa] | 0.967 | 0.776 | 0.886 | 0.0 | |
| 224133182 | 574 | predicted protein [Populus trichocarpa] | 0.967 | 0.782 | 0.875 | 0.0 | |
| 359495974 | 584 | PREDICTED: asparaginyl-tRNA synthetase, | 0.965 | 0.767 | 0.866 | 0.0 | |
| 449458950 | 562 | PREDICTED: asparagine--tRNA ligase, chlo | 0.965 | 0.797 | 0.828 | 0.0 | |
| 15236037 | 567 | asparaginyl-tRNA synthetase [Arabidopsis | 0.967 | 0.791 | 0.830 | 0.0 | |
| 2664210 | 566 | asparaginyl-tRNA synthetase [Arabidopsis | 0.967 | 0.793 | 0.830 | 0.0 | |
| 297804454 | 567 | hypothetical protein ARALYDRAFT_914989 [ | 0.967 | 0.791 | 0.830 | 0.0 | |
| 356514300 | 551 | PREDICTED: asparaginyl-tRNA synthetase, | 0.959 | 0.807 | 0.818 | 0.0 | |
| 356565357 | 550 | PREDICTED: asparaginyl-tRNA synthetase, | 0.959 | 0.809 | 0.818 | 0.0 | |
| 357476849 | 565 | Asparaginyl-tRNA synthetase [Medicago tr | 0.954 | 0.784 | 0.793 | 0.0 |
| >gi|224093120|ref|XP_002309798.1| predicted protein [Populus trichocarpa] gi|222852701|gb|EEE90248.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 846 bits (2185), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/449 (88%), Positives = 428/449 (95%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
+G++VGEFRKKLKI D+KGGP+EGLDRVG IVV GWVRTLR QSSVTFIEVNDGSCLSN
Sbjct: 92 VGNRVGEFRKKLKIADIKGGPDEGLDRVGKTIVVMGWVRTLRVQSSVTFIEVNDGSCLSN 151
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
MQCVM +AEGYDQV+SGLITTGASI +QG VV SQGSKQKVELKVNKIVLVGKSDPSYP
Sbjct: 152 MQCVMGLEAEGYDQVESGLITTGASILVQGTVVESQGSKQKVELKVNKIVLVGKSDPSYP 211
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDC
Sbjct: 212 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDC 271
Query: 181 EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYA 240
EGAGEQFCVTTLIP S+E A SPVD IPKTKDGLIDWSQDFF KPAFLTVSGQLNAETYA
Sbjct: 272 EGAGEQFCVTTLIPGSQEVANSPVDRIPKTKDGLIDWSQDFFGKPAFLTVSGQLNAETYA 331
Query: 241 TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 300
TALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV++IL+N
Sbjct: 332 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLTDDMACATAYLQYVVKHILEN 391
Query: 301 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 360
CKEDM+FFNTWIEKGIIDRL+ VAE+DFVQL+YTDA+ELL+KAKKKFEF V+WGCDLQSE
Sbjct: 392 CKEDMEFFNTWIEKGIIDRLTDVAEKDFVQLTYTDAVELLLKAKKKFEFPVEWGCDLQSE 451
Query: 361 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREER 420
HERY+TEEAFGGCPVI+ DYPK+IKAFYMRQNDDG+TVAAMDMLVPR+GELIGGSQREER
Sbjct: 452 HERYITEEAFGGCPVIIRDYPKDIKAFYMRQNDDGKTVAAMDMLVPRVGELIGGSQREER 511
Query: 421 LEYLEGRLDELKLNRDSYWWYLDLRHYGS 449
LEYLE RLDELKLN++S+WWYLDLR YGS
Sbjct: 512 LEYLEDRLDELKLNKESFWWYLDLRRYGS 540
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224133182|ref|XP_002327980.1| predicted protein [Populus trichocarpa] gi|222837389|gb|EEE75768.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 840 bits (2171), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/449 (87%), Positives = 426/449 (94%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
+G++VGEFR+KLKI D+KGGP+EGLDRVG I+V GWVRTLR QSSVTFIEVNDGSCLSN
Sbjct: 88 IGNRVGEFRRKLKIADIKGGPDEGLDRVGKTIIVMGWVRTLRVQSSVTFIEVNDGSCLSN 147
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+QCVM +AEGYDQV+SGL+TTGASIW+QG VV SQGSKQKVELKV KIV VGKSDPSYP
Sbjct: 148 LQCVMDLEAEGYDQVESGLVTTGASIWMQGTVVKSQGSKQKVELKVIKIVAVGKSDPSYP 207
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDC
Sbjct: 208 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDC 267
Query: 181 EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYA 240
EGAGEQFCVTTLIP S+EAA SPVD IPKTKDGLIDWSQDFF KPAFLTVSGQLNAETYA
Sbjct: 268 EGAGEQFCVTTLIPGSQEAANSPVDGIPKTKDGLIDWSQDFFGKPAFLTVSGQLNAETYA 327
Query: 241 TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 300
TALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVVR+IL+N
Sbjct: 328 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVRHILEN 387
Query: 301 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 360
CKEDM+FFNTWIEKGIIDRLS V E+DFVQL+YTDAIELL+KAKKKFEF ++WGCDLQSE
Sbjct: 388 CKEDMEFFNTWIEKGIIDRLSDVVEKDFVQLTYTDAIELLLKAKKKFEFPLEWGCDLQSE 447
Query: 361 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREER 420
HERY+TEE FGGCPVI+ DYPK+IKAFYMRQNDDG+TVAAMDMLVPR+GELIGGSQREER
Sbjct: 448 HERYITEEVFGGCPVIIRDYPKDIKAFYMRQNDDGKTVAAMDMLVPRVGELIGGSQREER 507
Query: 421 LEYLEGRLDELKLNRDSYWWYLDLRHYGS 449
LEY+E RLDELKLN++S+WWYLDLR YGS
Sbjct: 508 LEYIEDRLDELKLNKESFWWYLDLRRYGS 536
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495974|ref|XP_003635124.1| PREDICTED: asparaginyl-tRNA synthetase, chloroplastic/mitochondrial-like isoform 2 [Vitis vinifera] gi|297744376|emb|CBI37350.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 801 bits (2068), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/448 (86%), Positives = 421/448 (93%)
Query: 2 GSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNM 61
G KVGEFRK+L++VD+KGGP+EGLDR+G + V GWVRTLR QSSV FIEVNDGSCLSNM
Sbjct: 99 GEKVGEFRKRLRVVDIKGGPDEGLDRLGQTLAVKGWVRTLRVQSSVIFIEVNDGSCLSNM 158
Query: 62 QCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121
QCVM SDA+GYDQV+SG ITTGAS+ IQG +V SQGSKQKVELKV KIV VGKSDPS+PI
Sbjct: 159 QCVMNSDADGYDQVESGSITTGASVSIQGTLVASQGSKQKVELKVLKIVTVGKSDPSFPI 218
Query: 122 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE 181
QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF+WISSPIITASDCE
Sbjct: 219 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWISSPIITASDCE 278
Query: 182 GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYAT 241
GAGEQFCVTTLIPSSREA +S VDAIPK KDGLIDWSQDFF KPAFLTVSGQLNAETYAT
Sbjct: 279 GAGEQFCVTTLIPSSREATDSTVDAIPKAKDGLIDWSQDFFGKPAFLTVSGQLNAETYAT 338
Query: 242 ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC 301
ALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV YIL+NC
Sbjct: 339 ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVTYILENC 398
Query: 302 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 361
KEDM+FFNTWIEKGII+RLS VAE++FVQL+YTDA+ELL++A KKFEF VKWGCDLQSEH
Sbjct: 399 KEDMEFFNTWIEKGIINRLSDVAEKNFVQLTYTDAVELLLRANKKFEFPVKWGCDLQSEH 458
Query: 362 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERL 421
ERY+TE AFGGCPVI+ DYPK+IKAFYMR+NDDG+TVAAMDMLVPR+GELIGGSQREERL
Sbjct: 459 ERYITEVAFGGCPVIIRDYPKDIKAFYMRRNDDGKTVAAMDMLVPRVGELIGGSQREERL 518
Query: 422 EYLEGRLDELKLNRDSYWWYLDLRHYGS 449
EYLE RLD+LKL++DSYWWYLDLR YGS
Sbjct: 519 EYLEERLDDLKLSKDSYWWYLDLRRYGS 546
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458950|ref|XP_004147209.1| PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial-like [Cucumis sativus] gi|449504980|ref|XP_004162346.1| PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/448 (82%), Positives = 415/448 (92%)
Query: 2 GSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNM 61
G KVGEFRKKL+I ++KGG +EG+DR+G VV GWVRTLR QSSVTF+EVNDGSC+SNM
Sbjct: 77 GEKVGEFRKKLRISEIKGGRDEGVDRLGQTFVVMGWVRTLRVQSSVTFMEVNDGSCISNM 136
Query: 62 QCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121
QCV+ S EGYDQV+SGLITTGAS+W++G VV SQGSKQKVELK+ K+++VGKSDPS+P+
Sbjct: 137 QCVIDSTTEGYDQVESGLITTGASVWVEGVVVASQGSKQKVELKLQKVIVVGKSDPSFPV 196
Query: 122 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE 181
QKK+VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDCE
Sbjct: 197 QKKKVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCE 256
Query: 182 GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYAT 241
GAGEQFCVTTLIPSS E A S V +IPKTK+G IDWSQDFF KPAFLTVSGQLNAETYAT
Sbjct: 257 GAGEQFCVTTLIPSSGEPARSDVGSIPKTKEGFIDWSQDFFGKPAFLTVSGQLNAETYAT 316
Query: 242 ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC 301
ALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDM+CATAYLQYVVR+IL+NC
Sbjct: 317 ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMSCATAYLQYVVRHILENC 376
Query: 302 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 361
KED+DFFNTWIEKGIIDRL+ + E DFVQL YTDAIELL++A KKFE+ VKWG DLQSEH
Sbjct: 377 KEDLDFFNTWIEKGIIDRLTNLVENDFVQLPYTDAIELLLRANKKFEYPVKWGSDLQSEH 436
Query: 362 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERL 421
ERY+TE AFGGCPVI+ DYP++IKAFYMRQNDDG+TVAAMDMLVP+IGELIGGSQREERL
Sbjct: 437 ERYITEVAFGGCPVIIRDYPRDIKAFYMRQNDDGKTVAAMDMLVPKIGELIGGSQREERL 496
Query: 422 EYLEGRLDELKLNRDSYWWYLDLRHYGS 449
+YLE RLD+LKLN++SYWWYLDLR YGS
Sbjct: 497 DYLEARLDDLKLNKESYWWYLDLRRYGS 524
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15236037|ref|NP_193462.1| asparaginyl-tRNA synthetase [Arabidopsis thaliana] gi|55584148|sp|O48593.3|SYNO_ARATH RecName: Full=Asparagine--tRNA ligase, chloroplastic/mitochondrial; AltName: Full=Asparaginyl-tRNA synthetase; Short=AsnRS; Flags: Precursor gi|19310458|gb|AAL84964.1| AT4g17300/dl4685w [Arabidopsis thaliana] gi|332658474|gb|AEE83874.1| asparaginyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/449 (83%), Positives = 413/449 (91%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
GSKVGEFRKKL+I +VKGG +EGL RVG + + GWVRTLR+QSSVTFIE+NDGSCLSN
Sbjct: 81 FGSKVGEFRKKLRIAEVKGGADEGLSRVGQSLNIMGWVRTLRSQSSVTFIEINDGSCLSN 140
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+QCVMTSDAEGYDQV+SG I TGAS+ +QG +V SQG+KQKVELKV KI++VG+ D SYP
Sbjct: 141 LQCVMTSDAEGYDQVESGSILTGASVSVQGTIVASQGTKQKVELKVEKIIVVGECDSSYP 200
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRN LAYATHKFFQE+GF+W++SPIITASDC
Sbjct: 201 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFVWVASPIITASDC 260
Query: 181 EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYA 240
EGAGEQFCVTTLIPSS E ++ +DAIPKTK GLIDWSQDFF KPAFLTVSGQLN ETYA
Sbjct: 261 EGAGEQFCVTTLIPSSHENTDTSIDAIPKTKGGLIDWSQDFFGKPAFLTVSGQLNGETYA 320
Query: 241 TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 300
TALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV+Y+LDN
Sbjct: 321 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMACATAYLQYVVKYVLDN 380
Query: 301 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 360
CKEDM+FF+TWIEKGII RLS VAE++F+QL YTDAIE+L+KA KKF+F VKWG DLQSE
Sbjct: 381 CKEDMEFFDTWIEKGIIRRLSDVAEKEFLQLGYTDAIEILLKANKKFDFPVKWGLDLQSE 440
Query: 361 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREER 420
HERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPRIGELIGGSQREER
Sbjct: 441 HERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRIGELIGGSQREER 500
Query: 421 LEYLEGRLDELKLNRDSYWWYLDLRHYGS 449
LE LE RLDELKLN++SYWWYLDLR YGS
Sbjct: 501 LEVLEARLDELKLNKESYWWYLDLRRYGS 529
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2664210|emb|CAA10904.1| asparaginyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/449 (83%), Positives = 413/449 (91%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
GSKVGEFRKKL+I +VKGG +EGL RVG + + GWVRTLR+QSSVTFIE+NDGSCLSN
Sbjct: 80 FGSKVGEFRKKLRIAEVKGGADEGLSRVGQSLNIMGWVRTLRSQSSVTFIEINDGSCLSN 139
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+QCVMTSDAEGYDQV+SG I TGAS+ +QG +V SQG+KQKVELKV KI++VG+ D SYP
Sbjct: 140 LQCVMTSDAEGYDQVESGSILTGASVSVQGTIVASQGTKQKVELKVEKIIVVGECDSSYP 199
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRN LAYATHKFFQE+GF+W++SPIITASDC
Sbjct: 200 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFVWVASPIITASDC 259
Query: 181 EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYA 240
EGAGEQFCVTTLIPSS E ++ +DAIPKTK GLIDWSQDFF KPAFLTVSGQLN ETYA
Sbjct: 260 EGAGEQFCVTTLIPSSHEYTDTSIDAIPKTKGGLIDWSQDFFGKPAFLTVSGQLNGETYA 319
Query: 241 TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 300
TALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV+Y+LDN
Sbjct: 320 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMACATAYLQYVVKYVLDN 379
Query: 301 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 360
CKEDM+FF+TWIEKGII RLS VAE++F+QL YTDAIE+L+KA KKF+F VKWG DLQSE
Sbjct: 380 CKEDMEFFDTWIEKGIIRRLSDVAEKEFLQLGYTDAIEILLKANKKFDFPVKWGLDLQSE 439
Query: 361 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREER 420
HERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPRIGELIGGSQREER
Sbjct: 440 HERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRIGELIGGSQREER 499
Query: 421 LEYLEGRLDELKLNRDSYWWYLDLRHYGS 449
LE LE RLDELKLN++SYWWYLDLR YGS
Sbjct: 500 LEVLEARLDELKLNKESYWWYLDLRRYGS 528
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297804454|ref|XP_002870111.1| hypothetical protein ARALYDRAFT_914989 [Arabidopsis lyrata subsp. lyrata] gi|297315947|gb|EFH46370.1| hypothetical protein ARALYDRAFT_914989 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/449 (83%), Positives = 412/449 (91%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
GSKVGEFRKKLKI +VKGG +EGL RVG + + GWVRTLR+QSSVTFIE+NDGSCLSN
Sbjct: 81 FGSKVGEFRKKLKIAEVKGGADEGLGRVGQSLNIMGWVRTLRSQSSVTFIEINDGSCLSN 140
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+QCVM SDAEGYDQV+SG I TGAS+ +QG +V SQG+KQKVELKV KI++VGK D SYP
Sbjct: 141 LQCVMNSDAEGYDQVESGSILTGASVSVQGTIVASQGTKQKVELKVEKIIVVGKCDSSYP 200
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRN LAYATHKFFQE+GF+W++SPIITASDC
Sbjct: 201 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFVWVASPIITASDC 260
Query: 181 EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYA 240
EGAGEQFCVTTLIPSS E ++ +DAIPKTK GLIDWSQDFF KPAFLTVSGQLN ETYA
Sbjct: 261 EGAGEQFCVTTLIPSSHENTDTSIDAIPKTKGGLIDWSQDFFGKPAFLTVSGQLNGETYA 320
Query: 241 TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 300
TALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV+Y+LDN
Sbjct: 321 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMACATAYLQYVVKYVLDN 380
Query: 301 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 360
CKEDM+FF+TWIEKGII RLS VAE++F+QL YTDAIE+L+KA +KF+F VKWG DLQSE
Sbjct: 381 CKEDMEFFDTWIEKGIIRRLSDVAEKEFLQLGYTDAIEVLLKANRKFDFPVKWGLDLQSE 440
Query: 361 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREER 420
HERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPRIGELIGGSQREER
Sbjct: 441 HERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRIGELIGGSQREER 500
Query: 421 LEYLEGRLDELKLNRDSYWWYLDLRHYGS 449
LE LE RLDELKLN++SYWWYLDLR YGS
Sbjct: 501 LEVLEARLDELKLNKESYWWYLDLRRYGS 529
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356514300|ref|XP_003525844.1| PREDICTED: asparaginyl-tRNA synthetase, chloroplastic/mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/447 (81%), Positives = 409/447 (91%), Gaps = 2/447 (0%)
Query: 3 SKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
++V +FR+KL++ ++K G +G D G +VV GWVRTLR QS VTF+E+NDGSCLSNMQ
Sbjct: 69 NRVQQFRRKLRVSEIKEG--DGADVFGRNLVVQGWVRTLRIQSIVTFLEINDGSCLSNMQ 126
Query: 63 CVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122
CV+ S+AEGYDQV+SGL+TTGAS+W+QG VV SQGSKQKVELKVNKIVL+GKSDPS+PIQ
Sbjct: 127 CVLNSEAEGYDQVESGLVTTGASVWVQGVVVKSQGSKQKVELKVNKIVLIGKSDPSFPIQ 186
Query: 123 KKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG 182
KKR SREFLRTKAHLR RTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDCEG
Sbjct: 187 KKRASREFLRTKAHLRARTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCEG 246
Query: 183 AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA 242
AGEQFCVTTLIPSS E +SPVDAIPKT DGLIDWSQDFF KPAFLTVSGQLN ETYAT+
Sbjct: 247 AGEQFCVTTLIPSSHETTDSPVDAIPKTNDGLIDWSQDFFGKPAFLTVSGQLNGETYATS 306
Query: 243 LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK 302
LS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQ+V+R++LDNCK
Sbjct: 307 LSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQFVIRHVLDNCK 366
Query: 303 EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHE 362
EDM+FF+TWI KGIIDRLS VA++D VQ++YT+AI+LL A KKFEF VKWG DLQSEHE
Sbjct: 367 EDMEFFDTWINKGIIDRLSDVADKDVVQITYTEAIDLLSGANKKFEFPVKWGSDLQSEHE 426
Query: 363 RYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLE 422
RY+TEEAF GCPVI+ DYPK+IKAFYMRQNDDGRTVAAMDMLVP IGELIGGSQREERLE
Sbjct: 427 RYITEEAFSGCPVIIRDYPKDIKAFYMRQNDDGRTVAAMDMLVPGIGELIGGSQREERLE 486
Query: 423 YLEGRLDELKLNRDSYWWYLDLRHYGS 449
YLE RLD+LKLN+D+YWWYLDLR YGS
Sbjct: 487 YLEARLDDLKLNKDAYWWYLDLRRYGS 513
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356565357|ref|XP_003550908.1| PREDICTED: asparaginyl-tRNA synthetase, chloroplastic/mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/447 (81%), Positives = 409/447 (91%), Gaps = 2/447 (0%)
Query: 3 SKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
++V +FR+KL++ ++K G +G D +G +VV GWVRTLR QSSVTF+E+NDGSCLSNMQ
Sbjct: 68 NRVQQFRRKLRVSEIKEG--DGADVLGRNLVVQGWVRTLRIQSSVTFLEINDGSCLSNMQ 125
Query: 63 CVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122
CV+ S+AEGYDQV+SGL+TTGAS+W+QG VV SQGSKQKVELKVNKIVL+GKSDPS+PIQ
Sbjct: 126 CVLNSEAEGYDQVESGLVTTGASVWVQGVVVKSQGSKQKVELKVNKIVLIGKSDPSFPIQ 185
Query: 123 KKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG 182
KKR SREFLRTKAHLR RTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDCEG
Sbjct: 186 KKRASREFLRTKAHLRARTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCEG 245
Query: 183 AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA 242
AGEQFCVTTLIPSS E +SPVDAIPKT DGLIDWSQDFF KPAFLTVSGQLN ETYATA
Sbjct: 246 AGEQFCVTTLIPSSHETNDSPVDAIPKTNDGLIDWSQDFFGKPAFLTVSGQLNGETYATA 305
Query: 243 LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK 302
LS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQ+V+R++LDNCK
Sbjct: 306 LSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQFVIRHVLDNCK 365
Query: 303 EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHE 362
EDM+FF+ WI KGIIDRLS VA++D VQ++YT+AI+LL A KKFEF VKWG DLQSEHE
Sbjct: 366 EDMEFFDAWINKGIIDRLSDVADKDVVQITYTEAIDLLSGANKKFEFPVKWGSDLQSEHE 425
Query: 363 RYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLE 422
RY+TEE F GCPVI+ DYPK+IKAFYMRQNDDGRTVAAMDMLVP IGELIGGSQREERLE
Sbjct: 426 RYITEEVFSGCPVIIRDYPKDIKAFYMRQNDDGRTVAAMDMLVPGIGELIGGSQREERLE 485
Query: 423 YLEGRLDELKLNRDSYWWYLDLRHYGS 449
YLE RLD+LKLN+D+YWWYLDLR YGS
Sbjct: 486 YLEARLDDLKLNKDAYWWYLDLRRYGS 512
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357476849|ref|XP_003608710.1| Asparaginyl-tRNA synthetase [Medicago truncatula] gi|355509765|gb|AES90907.1| Asparaginyl-tRNA synthetase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/466 (79%), Positives = 414/466 (88%), Gaps = 23/466 (4%)
Query: 3 SKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
+KV +FRKKLK+ DVK G D +G +V+ GWVRTLR QSSVTF+E+NDGSCLSNMQ
Sbjct: 66 NKVPQFRKKLKVSDVKDGQ---FDSLGNTLVLQGWVRTLRLQSSVTFLEINDGSCLSNMQ 122
Query: 63 CVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122
CV+ ++ EGYDQV+SGLITTGAS+W+QG VV SQG+KQKVELK+NKIVLVGKSDPS+PIQ
Sbjct: 123 CVLDTEVEGYDQVESGLITTGASVWVQGIVVKSQGTKQKVELKLNKIVLVGKSDPSFPIQ 182
Query: 123 KKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG 182
KKRVSREFLRTKAHLR RTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDCEG
Sbjct: 183 KKRVSREFLRTKAHLRARTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCEG 242
Query: 183 AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA 242
AGEQFCVTTLIP+S E A+SPVDAIPK D LIDWSQDFF KPAFLTVSGQLNAETYATA
Sbjct: 243 AGEQFCVTTLIPNSHETADSPVDAIPKN-DKLIDWSQDFFGKPAFLTVSGQLNAETYATA 301
Query: 243 LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK 302
LS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQ+V+R+ILDNCK
Sbjct: 302 LSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQFVIRHILDNCK 361
Query: 303 EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHE 362
EDM+FFNTWI+KGIIDRLS VAE+D +Q++YT+A++LL +A KKFEF VKWGCDLQSEHE
Sbjct: 362 EDMEFFNTWIDKGIIDRLSDVAEKDVLQITYTEAVDLLSRANKKFEFPVKWGCDLQSEHE 421
Query: 363 RYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPR--------------- 407
RY+TEEAFGGCPVI+ DYPK+IKAFYMRQNDDG+TVAAMDMLVP+
Sbjct: 422 RYITEEAFGGCPVIIRDYPKDIKAFYMRQNDDGKTVAAMDMLVPKLGALIVCQCWAGEPR 481
Query: 408 ----IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS 449
IGELIGGSQREERLE+LE RLD+LKLN+D+YWWYLDLR YGS
Sbjct: 482 DYITIGELIGGSQREERLEHLEARLDDLKLNKDAYWWYLDLRRYGS 527
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 464 | ||||||
| TAIR|locus:2130804 | 567 | NS1 [Arabidopsis thaliana (tax | 0.965 | 0.790 | 0.803 | 5.9e-199 | |
| TIGR_CMR|GSU_1156 | 461 | GSU_1156 "asparaginyl-tRNA syn | 0.877 | 0.882 | 0.541 | 2.3e-117 | |
| TIGR_CMR|SO_2218 | 466 | SO_2218 "asparaginyl-tRNA synt | 0.894 | 0.890 | 0.523 | 8.2e-115 | |
| TAIR|locus:2014005 | 571 | SYNC3 [Arabidopsis thaliana (t | 0.521 | 0.423 | 0.574 | 1.1e-114 | |
| TAIR|locus:2165001 | 572 | SYNC1 [Arabidopsis thaliana (t | 0.519 | 0.421 | 0.597 | 3.8e-112 | |
| TIGR_CMR|BA_4802 | 463 | BA_4802 "asparaginyl-tRNA synt | 0.877 | 0.879 | 0.5 | 1.1e-110 | |
| UNIPROTKB|P0A8M0 | 466 | asnS "asparaginyl-tRNA synthet | 0.894 | 0.890 | 0.511 | 7.8e-110 | |
| TIGR_CMR|CPS_2591 | 466 | CPS_2591 "asparaginyl-tRNA syn | 0.875 | 0.871 | 0.505 | 2.4e-108 | |
| UNIPROTKB|Q9KSF9 | 466 | asnS "Asparagine--tRNA ligase" | 0.875 | 0.871 | 0.510 | 5.7e-107 | |
| TIGR_CMR|VC_1297 | 466 | VC_1297 "asparaginyl-tRNA synt | 0.875 | 0.871 | 0.510 | 5.7e-107 |
| TAIR|locus:2130804 NS1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1926 (683.0 bits), Expect = 5.9e-199, P = 5.9e-199
Identities = 360/448 (80%), Positives = 400/448 (89%)
Query: 2 GSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNM 61
GSKVGEFRKKL+I +VKGG +EGL RVG + + GWVRTLR+QSSVTFIE+NDGSCLSN+
Sbjct: 82 GSKVGEFRKKLRIAEVKGGADEGLSRVGQSLNIMGWVRTLRSQSSVTFIEINDGSCLSNL 141
Query: 62 QCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121
QCVMTSDAEGYDQV+SG I TGAS+ +QG +V SQG+KQKVELKV KI++VG+ D SYPI
Sbjct: 142 QCVMTSDAEGYDQVESGSILTGASVSVQGTIVASQGTKQKVELKVEKIIVVGECDSSYPI 201
Query: 122 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE 181
QKKRVSREFLRTKAHLRPRTNTFGAVARVRN LAYATHKFFQE+GF+W++SPIITASDCE
Sbjct: 202 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFVWVASPIITASDCE 261
Query: 182 GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYAT 241
GAGEQFCVTTLIPSS E ++ +DAIPKTK GLIDWSQDFF KPAFLTVSGQLN ETYAT
Sbjct: 262 GAGEQFCVTTLIPSSHENTDTSIDAIPKTKGGLIDWSQDFFGKPAFLTVSGQLNGETYAT 321
Query: 242 ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC 301
ALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV+Y+LDNC
Sbjct: 322 ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMACATAYLQYVVKYVLDNC 381
Query: 302 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 361
KEDM+FF+TWIEKGII RLS VAE++F+QL YTDAIE+L+KA KKF+F VKWG DLQSEH
Sbjct: 382 KEDMEFFDTWIEKGIIRRLSDVAEKEFLQLGYTDAIEILLKANKKFDFPVKWGLDLQSEH 441
Query: 362 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXX 421
ERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPRIGELIGGSQ
Sbjct: 442 ERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRIGELIGGSQREERL 501
Query: 422 XXXXXXXXXXKLNRDSYWWYLDLRHYGS 449
KLN++SYWWYLDLR YGS
Sbjct: 502 EVLEARLDELKLNKESYWWYLDLRRYGS 529
|
|
| TIGR_CMR|GSU_1156 GSU_1156 "asparaginyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1156 (412.0 bits), Expect = 2.3e-117, P = 2.3e-117
Identities = 228/421 (54%), Positives = 291/421 (69%)
Query: 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88
G ++V GWVRT R V F+ VNDGSCL+++Q V Y +++ I TGA++ +
Sbjct: 17 GTEVIVKGWVRTSRVGKGVAFLAVNDGSCLASLQVVAEPGLANYHELRG--IGTGAAVAV 74
Query: 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVA 148
+G V S + Q VEL K+V+VG +D YP+QKKR + E+LRT AHLRPR+NTFGAV
Sbjct: 75 RGIVAESPAAGQAVELHATKVVVVGGADEQYPLQKKRHTFEYLRTIAHLRPRSNTFGAVF 134
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIP 208
RVR++LA A H+FF E GF+++ +PIIT SDCEGAGE F VTTL PS+ P
Sbjct: 135 RVRSSLAQAVHRFFAERGFLYVHTPIITTSDCEGAGELFRVTTLDPSA-----------P 183
Query: 209 KTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFW 268
DG +D+SQDFF A LTVSGQL E +A A S++YTFGPTFRAENSNT RH AEFW
Sbjct: 184 PMADGAVDFSQDFFAAQAGLTVSGQLEGELFAQAFSDIYTFGPTFRAENSNTPRHAAEFW 243
Query: 269 MIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDF 328
MIEPE+AFADL+DD A A + +Y+ R++LDNC EDM FFN +++G++ R+ VA F
Sbjct: 244 MIEPEMAFADLRDDAALAEDFFRYLCRHVLDNCAEDMAFFNEHVDRGLLARVEQVAGSSF 303
Query: 329 VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY 388
+ Y AIE L +A FE+ V+WG DLQ+EHERYLTE+ GG PV V +YP+EIKAFY
Sbjct: 304 AMMEYGVAIEHLKRAAVPFEYPVEWGLDLQTEHERYLTEQVVGG-PVFVVNYPQEIKAFY 362
Query: 389 MRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYG 448
MR+NDDGRTVAAMD+LVP++GE+IGGSQ + +S WWYLD R +G
Sbjct: 363 MRRNDDGRTVAAMDLLVPKVGEIIGGSQREERYDLLESRMREGGIAPESLWWYLDSRRWG 422
Query: 449 S 449
S
Sbjct: 423 S 423
|
|
| TIGR_CMR|SO_2218 SO_2218 "asparaginyl-tRNA synthetase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 1132 (403.5 bits), Expect = 8.2e-115, P = 8.2e-115
Identities = 225/430 (52%), Positives = 290/430 (67%)
Query: 23 EGLDRVGLMIVVAGWVRTLR-AQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81
+G VG + V GWVRT R +++ ++F+ V DGSC + +Q V+ + E YD L T
Sbjct: 11 KGEHAVGSTVTVRGWVRTRRDSKAGISFLAVYDGSCFNPIQGVVPNSLENYDNEVLKL-T 69
Query: 82 TGASIWIQGNVVPSQGSKQKVELKVNKIVLVG-KSDP-SYPIQKKRVSREFLRTKAHLRP 139
G S+ + G++V S G+ Q EL+V + + G DP +YP+ KR S E LR AHLRP
Sbjct: 70 AGCSVIVTGDIVESPGAGQAYELQVTAVEVTGWVEDPDTYPMAAKRHSIEHLRELAHLRP 129
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREA 199
RTN GAVARVRN L+ A H+F+ ENGF+W+S+P+ITASDCEGAGE F V+TL
Sbjct: 130 RTNIIGAVARVRNCLSQAIHRFYHENGFVWVSTPLITASDCEGAGEMFRVSTL------- 182
Query: 200 AESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSN 259
++ +P+T DG +D+ +DFF K AFLTVSGQLN ETYA ALS +YTFGPTFRAENSN
Sbjct: 183 ---DMENLPRTSDGKVDYDKDFFGKEAFLTVSGQLNGETYACALSKIYTFGPTFRAENSN 239
Query: 260 TSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDR 319
TSRHLAEFWM+EPE+AFA L D A L+Y +L +D+ FF ++K +I+R
Sbjct: 240 TSRHLAEFWMVEPEVAFATLNDIAGLAEGMLKYAFNAVLTERMDDLQFFAQHVDKTVIER 299
Query: 320 LSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSD 379
L + DF Q+ YTDA+E+L K+ ++FEF V WG DL SEHERYL EE F PV+V +
Sbjct: 300 LQSFVSSDFAQVDYTDAVEILQKSGREFEFPVSWGIDLSSEHERYLAEEHFKA-PVVVKN 358
Query: 380 YPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYW 439
YPK+IKAFYMR N+DG+TVAAMD+L P IGE+IGGSQ LN++ YW
Sbjct: 359 YPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDMRLEEMDLNKEDYW 418
Query: 440 WYLDLRHYGS 449
WY DLR YG+
Sbjct: 419 WYRDLRRYGT 428
|
|
| TAIR|locus:2014005 SYNC3 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 720 (258.5 bits), Expect = 1.1e-114, Sum P(2) = 1.1e-114
Identities = 142/247 (57%), Positives = 179/247 (72%)
Query: 207 IPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAE 266
+PK DG ID+S DFF + AFLTVSGQL ETYA ALS+VYTFGPTFRAENS+TSRHLAE
Sbjct: 288 LPKN-DGKIDYSNDFFGRQAFLTVSGQLQVETYACALSSVYTFGPTFRAENSHTSRHLAE 346
Query: 267 FWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAER 326
FWM+EPE+AFAD+ DDM CA AY++Y+ ++++D C +DM+ + +++G RL+ VA+
Sbjct: 347 FWMVEPEIAFADIHDDMNCAEAYVKYMCKWLMDKCGDDMELMDKNVDEGCTKRLNMVAKA 406
Query: 327 DFVQLSYTDAIELLIKA----KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPK 382
F +++YT+AIE L KA K F+ V+WG DL SEHERYLTE F P+IV +YPK
Sbjct: 407 SFKRVTYTEAIERLEKAVAQGKVVFDNKVEWGIDLASEHERYLTEVEFDQKPIIVYNYPK 466
Query: 383 EIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYL 442
IKAFYMR NDD +TVAAMD+LVP++GELIGGSQ L + Y WYL
Sbjct: 467 GIKAFYMRLNDDEKTVAAMDVLVPKVGELIGGSQREERYDVIKQRIEEMGLPMEPYEWYL 526
Query: 443 DLRHYGS 449
DLR YG+
Sbjct: 527 DLRRYGT 533
|
|
| TAIR|locus:2165001 SYNC1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 721 (258.9 bits), Expect = 3.8e-112, Sum P(2) = 3.8e-112
Identities = 147/246 (59%), Positives = 178/246 (72%)
Query: 207 IPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAE 266
+PK KDG ID+S+DFF + AFLTVSGQL ETYA ALSNVYTFGPTFRAENS+TSRHLAE
Sbjct: 291 LPK-KDGNIDYSKDFFGRQAFLTVSGQLQVETYACALSNVYTFGPTFRAENSHTSRHLAE 349
Query: 267 FWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAER 326
FWM+EPE+AFADL+DDM CA AY++Y+ ++L+ C DM+ + G IDRL VA
Sbjct: 350 FWMVEPEIAFADLEDDMNCAEAYVKYMCNWLLEKCYADMELMAKNFDSGCIDRLKLVAST 409
Query: 327 DFVQLSYTDAIELLIKAK---KKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKE 383
F +++YT AIELL +A K+F+ V+WG DL SEHERYLTE F P+IV +YPK
Sbjct: 410 PFGRITYTKAIELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQK-PLIVYNYPKG 468
Query: 384 IKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLD 443
IKAFYMR NDD +TVAAMD+LVP++GELIGGSQ L + Y WYLD
Sbjct: 469 IKAFYMRLNDDEKTVAAMDVLVPKVGELIGGSQREERYDVIKKRIEEMGLPIEPYEWYLD 528
Query: 444 LRHYGS 449
LR YG+
Sbjct: 529 LRRYGT 534
|
|
| TIGR_CMR|BA_4802 BA_4802 "asparaginyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 1093 (389.8 bits), Expect = 1.1e-110, P = 1.1e-110
Identities = 210/420 (50%), Positives = 290/420 (69%)
Query: 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88
G + V+GW+R LR + FIE+NDGS ++Q V ++ + + ++ + +S+ +
Sbjct: 18 GQTVQVSGWIRNLRDSKAFGFIELNDGSFFKSVQIVFDTELDNFKEIAK--LPLSSSVKV 75
Query: 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVA 148
+G V+ + G+KQ E+K KI + G SD YP+QKKR + E+LRT AHLRPRTN F A
Sbjct: 76 EGKVIATPGAKQPFEIKAEKIDIEGLSDSDYPLQKKRHTFEYLRTIAHLRPRTNAFSATF 135
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIP 208
RVR+ A+A H+FFQE GF+ + +PIIT SD EGAGE F VTT ++ +P
Sbjct: 136 RVRSIAAFAIHQFFQERGFVHVHTPIITGSDTEGAGEMFRVTT----------QDLNNVP 185
Query: 209 KTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFW 268
K +DG +D S+DFF K LTVSGQLNAE YA A +VYTFGPTFRAENSNT+RH AEFW
Sbjct: 186 KGEDGQVDESKDFFGKETNLTVSGQLNAEAYALAFRDVYTFGPTFRAENSNTTRHAAEFW 245
Query: 269 MIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDF 328
M+EPE+AFA+L D M L+Y ++Y+L++ E+M+FFN++++K +++R++ V DF
Sbjct: 246 MVEPEIAFAELGDVMNLTEDMLKYAMKYVLEHAPEEMEFFNSFVDKTVLERMNNVINSDF 305
Query: 329 VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY 388
+++YT+AI++L ++ F++ V+WG DLQ+EHERYL+EE F PV V+DYPK+IKAFY
Sbjct: 306 GRITYTEAIKVLQESGADFKYPVEWGIDLQTEHERYLSEEIFKR-PVFVTDYPKDIKAFY 364
Query: 389 MRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYG 448
MR NDDG+TVAA D+LVP IGELIGGSQ +N + YWWYL+LR YG
Sbjct: 365 MRLNDDGKTVAATDLLVPGIGELIGGSQREERMDVLVDRIKELGMNEEDYWWYLELRKYG 424
|
|
| UNIPROTKB|P0A8M0 asnS "asparaginyl-tRNA synthetase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 1085 (387.0 bits), Expect = 7.8e-110, P = 7.8e-110
Identities = 220/430 (51%), Positives = 284/430 (66%)
Query: 23 EGLDRVGLMIVVAGWVRTLR-AQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81
+G V + V GWVRT R +++ ++F+ V DGSC +Q V+ + Y++ L T
Sbjct: 11 QGRVAVDSEVTVRGWVRTRRDSKAGISFLAVYDGSCFDPVQAVINNSLPNYNEDVLRL-T 69
Query: 82 TGASIWIQGNVVPSQGSKQKVELKVNKIVLVG-KSDP-SYPIQKKRVSREFLRTKAHLRP 139
TG S+ + G VV S G Q+ E++ +K+ + G DP +YP+ KR S E+LR AHLRP
Sbjct: 70 TGCSVIVTGKVVASPGQGQQFEIQASKVEVAGWVEDPDTYPMAAKRHSIEYLREVAHLRP 129
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREA 199
RTN GAVARVR+ LA A H+FF E GF W+S+P+ITASD EGAGE F V+TL
Sbjct: 130 RTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVSTL------- 182
Query: 200 AESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSN 259
++ +P+ G +D+ +DFF K +FLTVSGQLN ETYA ALS +YTFGPTFRAENSN
Sbjct: 183 ---DLENLPRNDQGKVDFDKDFFGKESFLTVSGQLNGETYACALSKIYTFGPTFRAENSN 239
Query: 260 TSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDR 319
TSRHLAEFWM+EPE+AFA+L D A A L+YV + +L+ +DM FF ++K + R
Sbjct: 240 TSRHLAEFWMLEPEVAFANLNDIAGLAEAMLKYVFKAVLEERADDMKFFAERVDKDAVSR 299
Query: 320 LSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSD 379
L E DF Q+ YTDA+ +L +KFE V WG DL SEHERYL EE F PV+V +
Sbjct: 300 LERFIEADFAQVDYTDAVTILENCGRKFENPVYWGVDLSSEHERYLAEEHFKA-PVVVKN 358
Query: 380 YPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYW 439
YPK+IKAFYMR N+DG+TVAAMD+L P IGE+IGGSQ LN++ YW
Sbjct: 359 YPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYW 418
Query: 440 WYLDLRHYGS 449
WY DLR YG+
Sbjct: 419 WYRDLRRYGT 428
|
|
| TIGR_CMR|CPS_2591 CPS_2591 "asparaginyl-tRNA synthetase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1071 (382.1 bits), Expect = 2.4e-108, P = 2.4e-108
Identities = 213/421 (50%), Positives = 282/421 (66%)
Query: 32 IVVAGWVRTLR-AQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90
I + GW+RT R +++ ++F+ ++DGSC +Q ++ ++ + Y+ L TTG S+ + G
Sbjct: 20 ITIHGWIRTRRDSKAGISFLALHDGSCFDAIQAIVPNELDNYESDVLKL-TTGCSVKVTG 78
Query: 91 NVVPSQGSKQKVELKVNKIVLVG-KSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVA 148
+V S G Q E++ ++ ++G DP +YP+ KR S EFLR +AHLRPRTN GAV
Sbjct: 79 ILVESPGKGQAFEIQATEVEVLGFVEDPDTYPMAAKRHSIEFLREQAHLRPRTNIGGAVT 138
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIP 208
RVRN LA A H+F G+ WIS+P+IT SDCEGAGE F V+TL ++ +P
Sbjct: 139 RVRNCLAQAVHRFLHSKGYFWISTPLITGSDCEGAGEMFRVSTL----------DMENLP 188
Query: 209 KTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFW 268
+ +G +D+++DFF K FLTVSGQLN ETY ALS VYTFGPTFRAENSNT+RHLAEFW
Sbjct: 189 RNDEGKVDYNKDFFGKETFLTVSGQLNVETYCNALSKVYTFGPTFRAENSNTTRHLAEFW 248
Query: 269 MIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDF 328
M+EPE+AFADL D A L+YV + +L+ +DM FF ++K ++DRL++V DF
Sbjct: 249 MVEPEIAFADLSDAADLAEEMLKYVFKAVLEERPDDMAFFQQRVDKTVLDRLNSVINTDF 308
Query: 329 VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY 388
V+L YTDAI +L KKFE V WG DL SEHERYL EE F G PV++ +YPK+IK+FY
Sbjct: 309 VRLDYTDAITILENCGKKFENQVSWGVDLNSEHERYLAEEHFNG-PVVLQNYPKDIKSFY 367
Query: 389 MRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYG 448
MR NDDG+TVAAMD+L P IGE+IGGSQ L+ Y WY DLR YG
Sbjct: 368 MRLNDDGKTVAAMDILAPGIGEIIGGSQREERLDVLDSRLEEMGLDIADYGWYRDLRRYG 427
Query: 449 S 449
+
Sbjct: 428 T 428
|
|
| UNIPROTKB|Q9KSF9 asnS "Asparagine--tRNA ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 1058 (377.5 bits), Expect = 5.7e-107, P = 5.7e-107
Identities = 215/421 (51%), Positives = 278/421 (66%)
Query: 32 IVVAGWVRTLR-AQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90
+ V GW+RT R +++ ++F+ + DGSC + +Q V+ ++ YD L TTG S+ + G
Sbjct: 20 VTVRGWIRTRRDSKAGISFLAIYDGSCFNPIQAVVPNNLNNYDNEVLKL-TTGCSVEVTG 78
Query: 91 NVVPSQGSKQKVELKVNKIVLVG--KSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVA 148
+V S S Q EL + + +VG + +YP+ K R S E+LR AHLRPRTN GAVA
Sbjct: 79 KIVESPASGQAFELAASDVKVVGWVEDADTYPMAKTRHSIEYLREVAHLRPRTNVIGAVA 138
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIP 208
RVRN LA A H+F+ E G+ W+S+P+ITASD EGAGE F V+TL ++ +P
Sbjct: 139 RVRNCLAQAIHRFYHEQGYFWVSAPLITASDAEGAGEMFRVSTL----------DMENLP 188
Query: 209 KTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFW 268
+T G +D++QDFF K FLTVSGQLNAE YA A+S VYTFGPTFRAENSNTSRHLAEFW
Sbjct: 189 RTDAGKVDYNQDFFGKETFLTVSGQLNAEAYACAISKVYTFGPTFRAENSNTSRHLAEFW 248
Query: 269 MIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDF 328
M+EPE+AFADL A L+YV + +L ++D++FFN I +I RL E DF
Sbjct: 249 MVEPEVAFADLNTVAKLAEDMLKYVFKAVLAERRDDLEFFNDRINNEVIARLEQFVESDF 308
Query: 329 VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY 388
Q+ YTDAIE+L K FEF V+WG DL SEHER+L EE F PVIV +YPK+IKAFY
Sbjct: 309 AQVDYTDAIEILKNCGKTFEFPVEWGIDLASEHERFLAEEHFKA-PVIVKNYPKDIKAFY 367
Query: 389 MRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYG 448
MR N+DG+TVAAMD+L P IGE+IGGSQ ++ + WY DLR YG
Sbjct: 368 MRMNEDGKTVAAMDVLAPGIGEIIGGSQREERLDILDARMREFGIDPEHMDWYRDLRRYG 427
Query: 449 S 449
+
Sbjct: 428 T 428
|
|
| TIGR_CMR|VC_1297 VC_1297 "asparaginyl-tRNA synthetase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 1058 (377.5 bits), Expect = 5.7e-107, P = 5.7e-107
Identities = 215/421 (51%), Positives = 278/421 (66%)
Query: 32 IVVAGWVRTLR-AQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90
+ V GW+RT R +++ ++F+ + DGSC + +Q V+ ++ YD L TTG S+ + G
Sbjct: 20 VTVRGWIRTRRDSKAGISFLAIYDGSCFNPIQAVVPNNLNNYDNEVLKL-TTGCSVEVTG 78
Query: 91 NVVPSQGSKQKVELKVNKIVLVG--KSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVA 148
+V S S Q EL + + +VG + +YP+ K R S E+LR AHLRPRTN GAVA
Sbjct: 79 KIVESPASGQAFELAASDVKVVGWVEDADTYPMAKTRHSIEYLREVAHLRPRTNVIGAVA 138
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIP 208
RVRN LA A H+F+ E G+ W+S+P+ITASD EGAGE F V+TL ++ +P
Sbjct: 139 RVRNCLAQAIHRFYHEQGYFWVSAPLITASDAEGAGEMFRVSTL----------DMENLP 188
Query: 209 KTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFW 268
+T G +D++QDFF K FLTVSGQLNAE YA A+S VYTFGPTFRAENSNTSRHLAEFW
Sbjct: 189 RTDAGKVDYNQDFFGKETFLTVSGQLNAEAYACAISKVYTFGPTFRAENSNTSRHLAEFW 248
Query: 269 MIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDF 328
M+EPE+AFADL A L+YV + +L ++D++FFN I +I RL E DF
Sbjct: 249 MVEPEVAFADLNTVAKLAEDMLKYVFKAVLAERRDDLEFFNDRINNEVIARLEQFVESDF 308
Query: 329 VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY 388
Q+ YTDAIE+L K FEF V+WG DL SEHER+L EE F PVIV +YPK+IKAFY
Sbjct: 309 AQVDYTDAIEILKNCGKTFEFPVEWGIDLASEHERFLAEEHFKA-PVIVKNYPKDIKAFY 367
Query: 389 MRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYG 448
MR N+DG+TVAAMD+L P IGE+IGGSQ ++ + WY DLR YG
Sbjct: 368 MRMNEDGKTVAAMDVLAPGIGEIIGGSQREERLDILDARMREFGIDPEHMDWYRDLRRYG 427
Query: 449 S 449
+
Sbjct: 428 T 428
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A3D3V7 | SYN_SHEB5 | 6, ., 1, ., 1, ., 2, 2 | 0.5511 | 0.8943 | 0.8905 | yes | no |
| O48593 | SYNO_ARATH | 6, ., 1, ., 1, ., 2, 2 | 0.8307 | 0.9676 | 0.7918 | yes | no |
| B1XKH1 | SYN_SYNP2 | 6, ., 1, ., 1, ., 2, 2 | 0.5346 | 0.875 | 0.8826 | yes | no |
| P43829 | SYN_HAEIN | 6, ., 1, ., 1, ., 2, 2 | 0.5395 | 0.9137 | 0.9079 | yes | no |
| A1S684 | SYN_SHEAM | 6, ., 1, ., 1, ., 2, 2 | 0.5552 | 0.8793 | 0.8755 | yes | no |
| A3QE68 | SYN_SHELP | 6, ., 1, ., 1, ., 2, 2 | 0.5516 | 0.8814 | 0.8776 | yes | no |
| A1RK52 | SYN_SHESW | 6, ., 1, ., 1, ., 2, 2 | 0.5465 | 0.8943 | 0.8905 | yes | no |
| B0JN99 | SYN_MICAN | 6, ., 1, ., 1, ., 2, 2 | 0.5693 | 0.8599 | 0.8788 | yes | no |
| P52276 | SYN_SYNY3 | 6, ., 1, ., 1, ., 2, 2 | 0.5727 | 0.8728 | 0.8766 | N/A | no |
| A8FVU8 | SYN_SHESH | 6, ., 1, ., 1, ., 2, 2 | 0.5399 | 0.8814 | 0.8776 | yes | no |
| Q97E56 | SYN_CLOAB | 6, ., 1, ., 1, ., 2, 2 | 0.5404 | 0.8771 | 0.8790 | yes | no |
| Q0HUL3 | SYN_SHESR | 6, ., 1, ., 1, ., 2, 2 | 0.5465 | 0.8943 | 0.8905 | yes | no |
| A5G5R2 | SYN_GEOUR | 6, ., 1, ., 1, ., 2, 2 | 0.5555 | 0.8814 | 0.8872 | yes | no |
| A0PY64 | SYN_CLONN | 6, ., 1, ., 1, ., 2, 2 | 0.5595 | 0.8771 | 0.8790 | yes | no |
| Q0HIB6 | SYN_SHESM | 6, ., 1, ., 1, ., 2, 2 | 0.5441 | 0.8943 | 0.8905 | yes | no |
| Q6D453 | SYN_ERWCT | 6, ., 1, ., 1, ., 2, 2 | 0.5581 | 0.875 | 0.8712 | yes | no |
| A7GB01 | SYN_CLOBL | 6, ., 1, ., 1, ., 2, 2 | 0.5351 | 0.9051 | 0.9071 | yes | no |
| A3DBI2 | SYN_CLOTH | 6, ., 1, ., 1, ., 2, 2 | 0.5694 | 0.8857 | 0.8857 | yes | no |
| Q24MK1 | SYN_DESHY | 6, ., 1, ., 1, ., 2, 2 | 0.5783 | 0.8663 | 0.8682 | yes | no |
| Q3IGU4 | SYN_PSEHT | 6, ., 1, ., 1, ., 2, 2 | 0.5534 | 0.8728 | 0.8709 | yes | no |
| Q72G53 | SYN_DESVH | 6, ., 1, ., 1, ., 2, 2 | 0.5571 | 0.8728 | 0.8785 | yes | no |
| P58692 | SYN_NOSS1 | 6, ., 1, ., 1, ., 2, 2 | 0.5625 | 0.8879 | 0.8898 | yes | no |
| P58693 | SYN_CLOPE | 6, ., 1, ., 1, ., 2, 2 | 0.5502 | 0.8706 | 0.8688 | yes | no |
| A5UF16 | SYN_HAEIG | 6, ., 1, ., 1, ., 2, 2 | 0.5417 | 0.9137 | 0.9079 | yes | no |
| A4Y6E4 | SYN_SHEPC | 6, ., 1, ., 1, ., 2, 2 | 0.5465 | 0.8943 | 0.8905 | yes | no |
| A8MJ91 | SYN_ALKOO | 6, ., 1, ., 1, ., 2, 2 | 0.5379 | 0.8814 | 0.8833 | yes | no |
| A6WMP4 | SYN_SHEB8 | 6, ., 1, ., 1, ., 2, 2 | 0.5511 | 0.8943 | 0.8905 | yes | no |
| Q9CN06 | SYN_PASMU | 6, ., 1, ., 1, ., 2, 2 | 0.5327 | 0.9137 | 0.9079 | yes | no |
| A1V9B8 | SYN_DESVV | 6, ., 1, ., 1, ., 2, 2 | 0.5595 | 0.8728 | 0.8785 | yes | no |
| Q12MT5 | SYN_SHEDO | 6, ., 1, ., 1, ., 2, 2 | 0.5454 | 0.8922 | 0.8884 | yes | no |
| A5HZE1 | SYN_CLOBH | 6, ., 1, ., 1, ., 2, 2 | 0.5396 | 0.9051 | 0.9071 | yes | no |
| A0KXL6 | SYN_SHESA | 6, ., 1, ., 1, ., 2, 2 | 0.5418 | 0.8943 | 0.8905 | yes | no |
| Q0SQ51 | SYN_CLOPS | 6, ., 1, ., 1, ., 2, 2 | 0.5502 | 0.8706 | 0.8688 | yes | no |
| Q8DG51 | SYN_THEEB | 6, ., 1, ., 1, ., 2, 2 | 0.5801 | 0.8857 | 0.8896 | yes | no |
| Q081Q0 | SYN_SHEFN | 6, ., 1, ., 1, ., 2, 2 | 0.5439 | 0.8900 | 0.8862 | yes | no |
| Q8EEZ1 | SYN_SHEON | 6, ., 1, ., 1, ., 2, 2 | 0.5441 | 0.8943 | 0.8905 | yes | no |
| Q74E08 | SYN_GEOSL | 6, ., 1, ., 1, ., 2, 2 | 0.5409 | 0.9073 | 0.9132 | yes | no |
| Q73P19 | SYN_TREDE | 6, ., 1, ., 1, ., 2, 2 | 0.5466 | 0.9224 | 0.9048 | yes | no |
| Q6MEC9 | SYN_PARUW | 6, ., 1, ., 1, ., 2, 2 | 0.5863 | 0.9202 | 0.9143 | yes | no |
| A7FRK8 | SYN_CLOB1 | 6, ., 1, ., 1, ., 2, 2 | 0.5396 | 0.9051 | 0.9071 | yes | no |
| Q899M9 | SYN_CLOTE | 6, ., 1, ., 1, ., 2, 2 | 0.5328 | 0.9159 | 0.9179 | yes | no |
| A6LPI6 | SYN_CLOB8 | 6, ., 1, ., 1, ., 2, 2 | 0.5491 | 0.8706 | 0.8706 | yes | no |
| Q0TMF3 | SYN_CLOP1 | 6, ., 1, ., 1, ., 2, 2 | 0.5502 | 0.8706 | 0.8688 | yes | no |
| Q0I2M9 | SYN_HAES1 | 6, ., 1, ., 1, ., 2, 2 | 0.5411 | 0.8836 | 0.8779 | yes | no |
| A5UCB9 | SYN_HAEIE | 6, ., 1, ., 1, ., 2, 2 | 0.5372 | 0.9137 | 0.9079 | yes | no |
| A9KZ30 | SYN_SHEB9 | 6, ., 1, ., 1, ., 2, 2 | 0.5488 | 0.8943 | 0.8905 | yes | no |
| A5N4F7 | SYN_CLOK5 | 6, ., 1, ., 1, ., 2, 2 | 0.5147 | 0.9051 | 0.9071 | yes | no |
| B2UXS0 | SYN_CLOBA | 6, ., 1, ., 1, ., 2, 2 | 0.5467 | 0.8706 | 0.8706 | yes | no |
| Q8RH70 | SYN_FUSNN | 6, ., 1, ., 1, ., 2, 2 | 0.5321 | 0.9116 | 0.9175 | yes | no |
| B2TI01 | SYN_CLOBB | 6, ., 1, ., 1, ., 2, 2 | 0.5467 | 0.8706 | 0.8706 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.22 | 0.991 |
| 3rd Layer | 6.1.1 | 0.976 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | gw1.VII.776.1 | asparaginyl-tRNA synthetase (EC-6.1.1.22) (571 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | fgenesh4_pg.C_LG_VIII001519 | glutamyl-tRNA(Gln) amidotransferase (EC-6.3.5.7) (506 aa) | • | 0.899 | |||||||
 | eugene3.00180130 | hypothetical protein (141 aa) | • | 0.899 | |||||||
 | estExt_fgenesh4_pm.C_LG_X0145 | glutamyl-tRNA(Gln) amidotransferase (529 aa) | • | 0.899 | |||||||
 | gw1.XI.1444.1 | aminoacyl-tRNA ligase (EC-6.1.1.4) (889 aa) | • | • | 0.597 | ||||||
 | eugene3.114390001 | Predicted protein (351 aa) | • | 0.412 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 464 | |||
| PLN02603 | 565 | PLN02603, PLN02603, asparaginyl-tRNA synthetase | 0.0 | |
| PRK03932 | 450 | PRK03932, asnC, asparaginyl-tRNA synthetase; Valid | 0.0 | |
| TIGR00457 | 453 | TIGR00457, asnS, asparaginyl-tRNA synthetase | 0.0 | |
| COG0017 | 435 | COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetas | 1e-167 | |
| PLN02221 | 572 | PLN02221, PLN02221, asparaginyl-tRNA synthetase | 1e-159 | |
| PTZ00425 | 586 | PTZ00425, PTZ00425, asparagine-tRNA ligase; Provis | 1e-145 | |
| PLN02532 | 633 | PLN02532, PLN02532, asparagine-tRNA synthetase | 1e-134 | |
| cd00776 | 322 | cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/As | 1e-121 | |
| PRK05159 | 437 | PRK05159, aspC, aspartyl-tRNA synthetase; Provisio | 5e-58 | |
| pfam00152 | 345 | pfam00152, tRNA-synt_2, tRNA synthetases class II | 4e-55 | |
| TIGR00458 | 428 | TIGR00458, aspS_nondisc, nondiscriminating asparty | 2e-37 | |
| PRK06462 | 335 | PRK06462, PRK06462, asparagine synthetase A; Revie | 1e-36 | |
| cd04318 | 82 | cd04318, EcAsnRS_like_N, EcAsnRS_like_N: N-termina | 6e-30 | |
| PLN02850 | 530 | PLN02850, PLN02850, aspartate-tRNA ligase | 3e-20 | |
| cd00669 | 269 | cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA syn | 1e-15 | |
| cd04100 | 85 | cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-ter | 1e-15 | |
| PTZ00401 | 550 | PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Prov | 5e-12 | |
| COG1190 | 502 | COG1190, LysU, Lysyl-tRNA synthetase (class II) [T | 4e-07 | |
| cd04323 | 84 | cd04323, AsnRS_cyto_like_N, AsnRS_cyto_like_N: N-t | 1e-06 | |
| TIGR00459 | 583 | TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba | 2e-06 | |
| cd00768 | 211 | cd00768, class_II_aaRS-like_core, Class II tRNA am | 6e-06 | |
| TIGR00499 | 496 | TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukar | 6e-06 | |
| COG0173 | 585 | COG0173, AspS, Aspartyl-tRNA synthetase [Translati | 2e-05 | |
| PRK00484 | 491 | PRK00484, lysS, lysyl-tRNA synthetase; Reviewed | 2e-04 | |
| PRK00476 | 588 | PRK00476, aspS, aspartyl-tRNA synthetase; Validate | 2e-04 | |
| cd04320 | 102 | cd04320, AspRS_cyto_N, AspRS_cyto_N: N-terminal, a | 0.001 | |
| PLN02903 | 652 | PLN02903, PLN02903, aminoacyl-tRNA ligase | 0.002 | |
| cd04319 | 103 | cd04319, PhAsnRS_like_N, PhAsnRS_like_N: N-termina | 0.004 |
| >gnl|CDD|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 921 bits (2381), Expect = 0.0
Identities = 392/448 (87%), Positives = 417/448 (93%)
Query: 2 GSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNM 61
G VGEFRKKL+I DVKGG +EGL RVG + V GWVRTLRAQSSVTFIEVNDGSCLSNM
Sbjct: 80 GEAVGEFRKKLRIADVKGGEDEGLARVGKTLNVMGWVRTLRAQSSVTFIEVNDGSCLSNM 139
Query: 62 QCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121
QCVMT DAEGYDQV+SGLITTGAS+ +QG VV SQG KQKVELKV+KIV+VGKSDPSYPI
Sbjct: 140 QCVMTPDAEGYDQVESGLITTGASVLVQGTVVSSQGGKQKVELKVSKIVVVGKSDPSYPI 199
Query: 122 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE 181
QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDCE
Sbjct: 200 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCE 259
Query: 182 GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYAT 241
GAGEQFCVTTLIP+S E S VD IPKTKDGLIDWSQDFF KPAFLTVSGQLN ETYAT
Sbjct: 260 GAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGETYAT 319
Query: 242 ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC 301
ALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV+YIL+NC
Sbjct: 320 ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILENC 379
Query: 302 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 361
KEDM+FFNTWIEKGIIDRLS V E++FVQLSYTDAIELL+KAKKKFEF VKWG DLQSEH
Sbjct: 380 KEDMEFFNTWIEKGIIDRLSDVVEKNFVQLSYTDAIELLLKAKKKFEFPVKWGLDLQSEH 439
Query: 362 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERL 421
ERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPR+GELIGGSQREERL
Sbjct: 440 ERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRVGELIGGSQREERL 499
Query: 422 EYLEGRLDELKLNRDSYWWYLDLRHYGS 449
EYLE RLDELKLN++SYWWYLDLR YGS
Sbjct: 500 EYLEARLDELKLNKESYWWYLDLRRYGS 527
|
Length = 565 |
| >gnl|CDD|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 698 bits (1805), Expect = 0.0
Identities = 246/440 (55%), Positives = 307/440 (69%), Gaps = 29/440 (6%)
Query: 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA 69
++ I D+ G VG + V GWVRT R + F+++ DGSC +Q V +
Sbjct: 2 MRVSIKDILKG-----KYVGQEVTVRGWVRTKRDSGKIAFLQLRDGSCFKQLQVVKDNGE 56
Query: 70 EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE 129
E ++++K +TTG+S+ + G VV S + Q EL+ KI ++G+ YPIQKKR S E
Sbjct: 57 EYFEEIKK--LTTGSSVIVTGTVVESPRAGQGYELQATKIEVIGEDPEDYPIQKKRHSIE 114
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
FLR AHLRPRTN FGAV R+RN LA A H+FF ENGF+W+ +PIITASDCEGAGE F V
Sbjct: 115 FLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNENGFVWVDTPIITASDCEGAGELFRV 174
Query: 190 TTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTF 249
TTL D+S+DFF K A+LTVSGQL AE YA AL VYTF
Sbjct: 175 TTLDL---------------------DFSKDFFGKEAYLTVSGQLYAEAYAMALGKVYTF 213
Query: 250 GPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFN 309
GPTFRAENSNT RHLAEFWMIEPE+AFADL+D+M A L+YVV+Y+L+NC +D++F N
Sbjct: 214 GPTFRAENSNTRRHLAEFWMIEPEMAFADLEDNMDLAEEMLKYVVKYVLENCPDDLEFLN 273
Query: 310 TWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEA 369
++KG I+RL E F +++YT+AIE+L K+ KKFEF V+WG DL SEHERYL EE
Sbjct: 274 RRVDKGDIERLENFIESPFPRITYTEAIEILQKSGKKFEFPVEWGDDLGSEHERYLAEEH 333
Query: 370 FGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD 429
F PV V++YPK+IKAFYMR N DG+TVAAMD+L P IGE+IGGSQREERL+ LE R+
Sbjct: 334 F-KKPVFVTNYPKDIKAFYMRLNPDGKTVAAMDLLAPGIGEIIGGSQREERLDVLEARIK 392
Query: 430 ELKLNRDSYWWYLDLRHYGS 449
EL LN++ YWWYLDLR YGS
Sbjct: 393 ELGLNKEDYWWYLDLRRYGS 412
|
Length = 450 |
| >gnl|CDD|232982 TIGR00457, asnS, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 555 bits (1433), Expect = 0.0
Identities = 224/423 (52%), Positives = 293/423 (69%), Gaps = 23/423 (5%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + V+GWVRT R+ + F+E+NDGS L +Q V+ + Y +TTG+S+
Sbjct: 15 VGDEVTVSGWVRTKRSSKKIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKSLTTGSSVS 74
Query: 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGA 146
+ G VV S G Q VEL+V KI +VG+++P YP+QKK S EFLR AHLR RTNT GA
Sbjct: 75 VTGKVVESPGKGQPVELQVKKIEVVGEAEPDDYPLQKKEHSLEFLRDIAHLRLRTNTLGA 134
Query: 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDA 206
V RVRNAL+ A H++FQENGF W+S PI+T++DCEGAGE F
Sbjct: 135 VMRVRNALSQAIHRYFQENGFTWVSPPILTSNDCEGAGELF------------------- 175
Query: 207 IPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAE 266
+ G ID+SQDFF K A+LTVSGQL ETYA ALS VYTFGPTFRAE SNTSRHL+E
Sbjct: 176 --RVSTGNIDFSQDFFGKEAYLTVSGQLYLETYALALSKVYTFGPTFRAEKSNTSRHLSE 233
Query: 267 FWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAER 326
FWMIEPE+AFA+L D + A ++Y+++ +L+NC +++ F +K +I RL +
Sbjct: 234 FWMIEPEMAFANLNDLLQLAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINN 293
Query: 327 DFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKA 386
F +++YTDAIE+L ++ K FE+ WG DLQ+EHER+L EE F PV V++YPK+IKA
Sbjct: 294 KFARITYTDAIEILKESDKNFEYEDFWGDDLQTEHERFLAEEYFKP-PVFVTNYPKDIKA 352
Query: 387 FYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRH 446
FYM+ NDDG+TVAAMD+L P IGE+IGGS+RE+ L+ LE R+ E+ L+ D+ WYLDLR
Sbjct: 353 FYMKLNDDGKTVAAMDLLAPGIGEIIGGSEREDDLDKLENRMKEMGLDTDALNWYLDLRK 412
Query: 447 YGS 449
YGS
Sbjct: 413 YGS 415
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn [Protein synthesis, tRNA aminoacylation]. Length = 453 |
| >gnl|CDD|223096 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 477 bits (1230), Expect = e-167
Identities = 180/444 (40%), Positives = 246/444 (55%), Gaps = 49/444 (11%)
Query: 8 FRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTS 67
K+ I D+K P+ G V V GWV R + F+ + DGS +Q V+
Sbjct: 1 MMKRTYIKDIK--PHVGGQEV----TVRGWVHNKRDLGKIIFLVLRDGSGF--IQAVVPK 52
Query: 68 DAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS 127
+ + K+ +T +S+ + G V S + Q EL+V KI ++G++DP YPI KK S
Sbjct: 53 NKVYEELFKAKKLTLESSVVVTGIVKASPKAPQGFELQVEKIEVLGEADPPYPIDKKEHS 112
Query: 128 R-EFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ 186
E L HL RT AV ++R+++ A +FF ENGF + +PIITAS EG GE
Sbjct: 113 ELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYENGFTEVHTPIITASATEGGGEL 172
Query: 187 FCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNV 246
F V D+F+K A+LT S QL E A AL V
Sbjct: 173 FKV------------------------------DYFDKEAYLTQSPQLYKEALAAALERV 202
Query: 247 YTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMD 306
+T GPTFRAE SNT RHL+EFWM++PE+AFADL D M A ++Y+ + +L+ C ++++
Sbjct: 203 FTIGPTFRAEKSNTRRHLSEFWMLDPEMAFADLNDVMDLAEELIKYLFKKVLEECADELE 262
Query: 307 FFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLT 366
F + L F +++Y +AIE+L +K FE V+WG DL +EHERYL
Sbjct: 263 FLGRDNSE-----LKRPESAPFPRITYKEAIEIL--EEKGFEK-VEWGDDLGTEHERYLG 314
Query: 367 EEAFGGCPVIVSDYPKEIKAFYMRQNDDG-RTVAAMDMLVPRIGELIGGSQREERLEYLE 425
EE F PV V++YPKEIK FYMR + D TVA+ D+L P GE+IGGSQRE + L
Sbjct: 315 EEYFKP-PVFVTNYPKEIKPFYMRPDPDNPGTVASFDLLAPGGGEIIGGSQREHDYDLLV 373
Query: 426 GRLDELKLNRDSYWWYLDLRHYGS 449
R+ E L+ +SY WYLDLR YG
Sbjct: 374 ERIKEKGLDPESYEWYLDLRKYGM 397
|
Length = 435 |
| >gnl|CDD|177867 PLN02221, PLN02221, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 463 bits (1193), Expect = e-159
Identities = 239/513 (46%), Positives = 319/513 (62%), Gaps = 76/513 (14%)
Query: 7 EFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS--SVTFIEVNDGSCLSNMQCV 64
+F ++ I + P+ G G + + GWV+T R Q + F+EVNDGSC +N+Q +
Sbjct: 28 QFSDRVLIRSILDRPDGGAGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVM 87
Query: 65 MTSDAEGYDQVKSGLITTGASIWIQGNV-VP--SQGSKQKVELKVNKIVLVGKSDPS-YP 120
+ D+ YD S L+ TG + + G + VP +G+KQK+EL V K++ VG DP+ YP
Sbjct: 88 V--DSSLYDL--STLVATGTCVTVDGVLKVPPEGKGTKQKIELSVEKVIDVGTVDPTKYP 143
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPII----- 175
+ K +++ EFLR HLR RTN+ AVAR+RNALA+ATH FFQE+ F++I +PII
Sbjct: 144 LPKTKLTLEFLRDVLHLRSRTNSISAVARIRNALAFATHSFFQEHSFLYIHTPIITTSDC 203
Query: 176 -----------------------------TASDCEGA-------GEQFCVTTLIPSSREA 199
T +D E A GE +S+E
Sbjct: 204 EGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAKASKEE 263
Query: 200 AESPV--------------------DAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETY 239
+ V +PK KDG ID+S+DFF + AFLTVSGQL ETY
Sbjct: 264 ITAAVAELKIAKESLAHIEERSKLKPGLPK-KDGKIDYSKDFFGRQAFLTVSGQLQVETY 322
Query: 240 ATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILD 299
A ALS+VYTFGPTFRAENS+TSRHLAEFWM+EPE+AFADL+DDM CA AY++Y+ +++LD
Sbjct: 323 ACALSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADLEDDMNCAEAYVKYMCKWLLD 382
Query: 300 NCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA---KKKFEFLVKWGCD 356
C +DM+ + G IDRL VA F +++YT+AIELL +A K+F+ V+WG D
Sbjct: 383 KCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAIELLEEAVAKGKEFDNNVEWGID 442
Query: 357 LQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQ 416
L SEHERYLTE F P+IV +YPK IKAFYMR NDD +TVAAMD+LVP++GELIGGSQ
Sbjct: 443 LASEHERYLTEVLFQK-PLIVYNYPKGIKAFYMRLNDDEKTVAAMDVLVPKVGELIGGSQ 501
Query: 417 REERLEYLEGRLDELKLNRDSYWWYLDLRHYGS 449
REER + ++ R++E+ L + Y WYLDLR YG+
Sbjct: 502 REERYDVIKQRIEEMGLPIEPYEWYLDLRRYGT 534
|
Length = 572 |
| >gnl|CDD|240414 PTZ00425, PTZ00425, asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Score = 427 bits (1100), Expect = e-145
Identities = 215/473 (45%), Positives = 292/473 (61%), Gaps = 55/473 (11%)
Query: 28 VGLMIVVAGWVRTLRAQSS--VTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGA 84
+ +I V GW + +R Q F+ +NDGSC N+Q ++ E Y+++ K G+ G
Sbjct: 80 IDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQSIENYEKLLKCGV---GC 136
Query: 85 SIWIQGNVV--PSQGS------KQKVELKVN-----KIVLVGKS-DPS-YPIQKKRVSRE 129
G ++ P Q K+ VEL + + G++ DP YP+ KK +E
Sbjct: 137 CFRFTGKLIISPVQNENKKGLLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKNHGKE 196
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
FLR AHLRPR+ +V R+RNALA ATH FFQ GF++I +P+IT SDCEG GE F V
Sbjct: 197 FLREVAHLRPRSYFISSVIRIRNALAIATHLFFQSRGFLYIHTPLITTSDCEGGGEMFTV 256
Query: 190 TTL---------IPSSR-----------------------EAAESPVDAIPKTKDG-LID 216
TTL IP ++ S + P D LID
Sbjct: 257 TTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNANNNNGNSSSSNAVSSPAYPDQYLID 316
Query: 217 WSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 276
+ +DFF K AFLTVSGQL+ E +++ +VYTFGPTFRAENS+TSRHLAEFWMIEPE+AF
Sbjct: 317 YKKDFFSKQAFLTVSGQLSLENLCSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAF 376
Query: 277 ADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDA 336
ADL D+M A +Y++Y + Y+L+N +D+ +F +E G+I RL + + DF +++YT+
Sbjct: 377 ADLYDNMELAESYIKYCIGYVLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNV 436
Query: 337 IELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGR 396
I+LL FE VKWG DLQSEHER++ E+ F PVIV +YPK++KAFYM+ N+D +
Sbjct: 437 IDLLQPYSDSFEVPVKWGMDLQSEHERFVAEQIFKK-PVIVYNYPKDLKAFYMKLNEDQK 495
Query: 397 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS 449
TVAAMD+LVP+IGE+IGGSQRE+ LE L+ + E KLN +SYWWY LR +GS
Sbjct: 496 TVAAMDVLVPKIGEVIGGSQREDNLERLDKMIKEKKLNMESYWWYRQLRKFGS 548
|
Length = 586 |
| >gnl|CDD|215291 PLN02532, PLN02532, asparagine-tRNA synthetase | Back alignment and domain information |
|---|
Score = 400 bits (1030), Expect = e-134
Identities = 201/511 (39%), Positives = 296/511 (57%), Gaps = 75/511 (14%)
Query: 3 SKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
S+V FR K++ GG + R I + ++ SV ++ ++DGSC++++Q
Sbjct: 96 SRVPIFRSIAKVL--SGGGSTYPVREKTEIAIQ---KSAPPPPSVAYLLISDGSCVASLQ 150
Query: 63 CVMTSDAEGYDQVKSGLITTGASIWIQG---NVVPSQGSKQKVELKVNKIVLVGKSDPS- 118
V+ S Q L+ TG I +G +P+QG K +EL+V KI+ +G DP
Sbjct: 151 VVVDSALAPLTQ----LMATGTCILAEGVLKLPLPAQG-KHVIELEVEKILHIGTVDPEK 205
Query: 119 YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
YP+ KKR+ + LR +H RPRT T +V RVR+AL +ATH FFQ++GF+++ PIIT +
Sbjct: 206 YPLSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQVPIITTT 265
Query: 179 DCEGAGEQFCVTTLI----------------------------------------PSSRE 198
D G GE F VTTL+ S+RE
Sbjct: 266 DATGFGEMFRVTTLLGKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNRE 325
Query: 199 AAESPVDAIPKT-------------------KDGLIDWSQDFFEKPAFLTVSGQLNAETY 239
A + + KT K + +S+DFF +P +LTVSG+L+ E+Y
Sbjct: 326 ALVAAEQDLRKTNQLASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESY 385
Query: 240 ATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILD 299
A AL NVYTFGP FRA+ +++RHLAE WM+E E+AF++L+D M CA Y +++ +++L+
Sbjct: 386 ACALGNVYTFGPRFRADRIDSARHLAEMWMVEVEMAFSELEDAMNCAEDYFKFLCKWVLE 445
Query: 300 NCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA-KKKFEFLVKWGCDLQ 358
NC EDM F + I+K I RL + ++SYT+A++LL +A KKFE +WG L
Sbjct: 446 NCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDKKFETKPEWGIALT 505
Query: 359 SEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQRE 418
+EH YL +E + PVI+ +YPKE+K FY+R NDDG+TVAA D++VP++G +I GSQ E
Sbjct: 506 TEHLSYLADEIYKK-PVIIYNYPKELKPFYVRLNDDGKTVAAFDLVVPKVGTVITGSQNE 564
Query: 419 ERLEYLEGRLDELKLNRDSYWWYLDLRHYGS 449
ER++ L R++EL L R+ Y WYLDLR +G+
Sbjct: 565 ERMDILNARIEELGLPREQYEWYLDLRRHGT 595
|
Length = 633 |
| >gnl|CDD|238399 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Score = 355 bits (914), Expect = e-121
Identities = 125/327 (38%), Positives = 175/327 (53%), Gaps = 41/327 (12%)
Query: 125 RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAG 184
+ E L HL RT A+ R+R+ + A +F +ENGF + +P IT++D EG
Sbjct: 1 DANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGA 60
Query: 185 EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALS 244
E F +F KPA+L S QL E AL
Sbjct: 61 ELF------------------------------KVSYFGKPAYLAQSPQLYKEMLIAALE 90
Query: 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKE 303
VY GP FRAE SNT RHL+EFWM+E E+AF D + M ++Y+ + +L+ C +
Sbjct: 91 RVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAK 150
Query: 304 DMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHER 363
+++ N ++R F +++Y +AIELL + + E VKWG DL +EHER
Sbjct: 151 ELELVN------QLNRELLKPLEPFPRITYDEAIELLREKGVEEE--VKWGEDLSTEHER 202
Query: 364 YLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLE 422
L E G PV V+DYPKEIK FYM+ +DD TV + D+L+P +GE++GGSQR +
Sbjct: 203 LLGEIVKGD-PVFVTDYPKEIKPFYMKPDDDNPETVESFDLLMPGVGEIVGGSQRIHDYD 261
Query: 423 YLEGRLDELKLNRDSYWWYLDLRHYGS 449
LE R+ E L+ +S+ WYLDLR YG
Sbjct: 262 ELEERIKEHGLDPESFEWYLDLRKYGM 288
|
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Length = 322 |
| >gnl|CDD|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 196 bits (502), Expect = 5e-58
Identities = 118/441 (26%), Positives = 192/441 (43%), Gaps = 85/441 (19%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGLITTGASIWIQ 89
+ +AGWV +R + F+ + D S + +Q V+ E ++ +K + + + +
Sbjct: 19 VTLAGWVHEIRDLGGIAFLILRDRSGI--IQVVVKKKVDEELFETIK--KLKRESVVSVT 74
Query: 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHL------------ 137
G V + + VE+ +I ++ K++ P+ +S + A L
Sbjct: 75 GTVKANPKAPGGVEVIPEEIEVLNKAEEPLPLD---ISGK---VLAELDTRLDNRFLDLR 128
Query: 138 RPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSR 197
RPR A+ ++R+ + A +F ENGF I +P I AS EG E F +
Sbjct: 129 RPRVR---AIFKIRSEVLRAFREFLYENGFTEIFTPKIVASGTEGGAELFPI-------- 177
Query: 198 EAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETY-----ATALSNVYTFGPT 252
D+FEK A+L S QL Y V+ GP
Sbjct: 178 ----------------------DYFEKEAYLAQSPQL----YKQMMVGAGFERVFEIGPV 211
Query: 253 FRAENSNTSRHLAEFWMIEPELAFADL-KDDMACATAYLQYVVRYILDNCKEDMDFFNTW 311
FRAE NTSRHL E+ I+ E+ F D +D M L+Y+ + +NC+++++
Sbjct: 212 FRAEEHNTSRHLNEYTSIDVEMGFIDDHEDVMDLLENLLRYMYEDVAENCEKELELLGIE 271
Query: 312 IEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEA-- 369
+ V E +++Y +AIE+L + + WG DL +E ER L E
Sbjct: 272 LP---------VPETPIPRITYDEAIEILKSKGNE----ISWGDDLDTEGERLLGEYVKE 318
Query: 370 -FGGCPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGR 427
+G ++DYP E + FY M DD + D+L + E+ G QR R + L
Sbjct: 319 EYGSDFYFITDYPSEKRPFYTMPDEDDPEISKSFDLLFRGL-EITSGGQRIHRYDMLVES 377
Query: 428 LDELKLNRDSYWWYLDLRHYG 448
+ E LN +S+ +YL+ YG
Sbjct: 378 IKEKGLNPESFEFYLEAFKYG 398
|
Length = 437 |
| >gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N) | Back alignment and domain information |
|---|
Score = 186 bits (475), Expect = 4e-55
Identities = 89/345 (25%), Positives = 137/345 (39%), Gaps = 56/345 (16%)
Query: 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ 186
S E +L R A ++R+ + A +F E GF+ + +PI+T S EG
Sbjct: 1 SEETRLKYRYLDLRRPKMQANLKLRSKIIKAIREFLDERGFLEVETPILTKSTPEGGARD 60
Query: 187 FCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA-LSN 245
F L+PS F+ K A+L S QL + A
Sbjct: 61 F----LVPSK------------------------FYAKEAYLPQSPQLYKQLLMVAGFDR 92
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDM 305
V+ P FR E+ T RH EF ++ E++F D +D M ++YV + +L +E
Sbjct: 93 VFQIAPCFRDEDLRTDRHPPEFTQLDLEMSFVDYEDVMDLTEDLIKYVFKKVLGKREELE 152
Query: 306 DFFNTWIEKGIIDRLSTVAER------DFVQLSYTDAIELLIKAKKKFEFLVK------- 352
IE R+ T AE D L + ++ + + K EF V
Sbjct: 153 LLG---IELPEFPRI-TYAEAIERYGSDKPDLRFGLELKDVTEIFKGSEFKVFAEAGDVV 208
Query: 353 ---WGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRI 408
G E L ++ PV V+D+P FYM +++D D+++
Sbjct: 209 DKALGALRSELGEENLGDK-DKDNPVFVTDFPLFEHPFYMPKDEDPPGLAERFDLVLN-G 266
Query: 409 GELIGGSQREERLEYLEGRLDELKLNRDS----YWWYLDLRHYGS 449
GE+ GGS R E R +EL L+ + + +YLD YG
Sbjct: 267 GEIGGGSIRIHDPEEQRKRFEELGLDPEEAEEKFGFYLDALKYGM 311
|
Length = 345 |
| >gnl|CDD|129550 TIGR00458, aspS_nondisc, nondiscriminating aspartyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 2e-37
Identities = 110/423 (26%), Positives = 176/423 (41%), Gaps = 54/423 (12%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKS-GLITTGASIWIQG 90
+ GWV +R + F+ + D L +Q + + K + + + ++G
Sbjct: 15 VTFMGWVHEIRDLGGLIFVLLRDREGL--IQITAPAKKVSKNLFKWAKKLNLESVVAVRG 72
Query: 91 NVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLR---PRTNTFGAV 147
V + + E+ KI ++ ++ P+ L T+ R R T A+
Sbjct: 73 IVKIKEKAPGGFEIIPTKIEVINEAKEPLPLDPTEKVPAELDTRLDYRFLDLRRPTVQAI 132
Query: 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAI 207
R+R+ + + +F E GFI + +P + AS EG E F +T
Sbjct: 133 FRIRSGVLESVREFLAEEGFIEVHTPKLVASATEGGTELFPIT----------------- 175
Query: 208 PKTKDGLIDWSQDFFEKPAFLTVSGQLNAETY-ATALSNVYTFGPTFRAENSNTSRHLAE 266
+FE+ AFL S QL + A VY GP FRAE NT RHL E
Sbjct: 176 -------------YFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNE 222
Query: 267 FWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAER 326
I+ E+AF D D M + V + + C ++ +EK E
Sbjct: 223 ATSIDIEMAFEDHHDVMDILEELVVRVFEDVPERCAHQLETLEFKLEK---------PEG 273
Query: 327 DFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKA 386
FV+L+Y +AIE+ + + WG DL +E E+ L EE G ++D+P EI+
Sbjct: 274 KFVRLTYDEAIEMANAKGVE----IGWGEDLSTEAEKALGEEMDG--LYFITDWPTEIRP 327
Query: 387 FY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLR 445
FY M D+ + D++ R E+ G+QR + L R+ LN + + YL+
Sbjct: 328 FYTMPDEDNPEISKSFDLMY-RDLEISSGAQRIHLHDLLVERIKAKGLNPEGFKDYLEAF 386
Query: 446 HYG 448
YG
Sbjct: 387 SYG 389
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn) [Protein synthesis, tRNA aminoacylation]. Length = 428 |
| >gnl|CDD|235808 PRK06462, PRK06462, asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 1e-36
Identities = 78/303 (25%), Positives = 139/303 (45%), Gaps = 44/303 (14%)
Query: 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDA 206
V +V++++ T +F GF+ + PII+ T P ++ PV
Sbjct: 29 VLKVQSSILRYTREFLDGRGFVEVLPPIISP-----------STD--PLMGLGSDLPVKQ 75
Query: 207 IPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAEN--SNTSRHL 264
I S DF+ +L S L+ + L ++ P FR E +T RHL
Sbjct: 76 I----------SIDFYGVEYYLADSMILHKQLALRMLGKIFYLSPNFRLEPVDKDTGRHL 125
Query: 265 AEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA 324
EF ++ E+ ADL + M ++Y+V+ +L+ +++++FF R
Sbjct: 126 YEFTQLDIEIEGADLDEVMDLIEDLIKYLVKELLEEHEDELEFFG---------RDLPHL 176
Query: 325 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEI 384
+R F ++++ +A+E+L + + L + G SE E+ L+E P + D PK
Sbjct: 177 KRPFKRITHKEAVEILNEEGCRGIDLEELG----SEGEKSLSEHF--EEPFWIIDIPKGS 230
Query: 385 KAFYMRQNDDGRT--VAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWY 441
+ FY R+ D R + D+L+P GE + G +RE E + R+ E ++ + Y WY
Sbjct: 231 REFYDRE-DPERPGVLRNYDLLLPEGYGEAVSGGEREYEYEEIVERIREHGVDPEKYKWY 289
Query: 442 LDL 444
L++
Sbjct: 290 LEM 292
|
Length = 335 |
| >gnl|CDD|239813 cd04318, EcAsnRS_like_N, EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 6e-30
Identities = 33/83 (39%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ V GWVR++R ++FIE+NDGSCL N+Q V+ + + ++ ++TG+SI ++G
Sbjct: 2 VTVNGWVRSVRDSKKISFIELNDGSCLKNLQVVVDKELTNFKEIL--KLSTGSSIRVEGV 59
Query: 92 VVPSQGSKQKVELKVNKIVLVGK 114
+V S G+KQ EL+ KI ++G+
Sbjct: 60 LVKSPGAKQPFELQAEKIEVLGE 82
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. S. cerevisiae mtAsnRS can charge E.coli tRNA with asparagines. Mutations in the gene for S. cerevisiae mtAsnRS has been found to induce a "petite" phenotype typical for a mutation in a nuclear gene that results in a non-functioning mitochondrial protein synthesis system. Length = 82 |
| >gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 3e-20
Identities = 103/459 (22%), Positives = 187/459 (40%), Gaps = 81/459 (17%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI----- 80
+ G +++ G V T+R + F+ + +QCV+ V G++
Sbjct: 78 ELAGSEVLIRGRVHTIRGKGKSAFLVLR--QSGFTVQCVVFVSE---VTVSKGMVKYAKQ 132
Query: 81 -TTGASIWIQGNVV----PSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR------- 128
+ + + ++G V P +G+ Q+VE++V KI V K+ + P + +R
Sbjct: 133 LSRESVVDVEGVVSVPKKPVKGTTQQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEK 192
Query: 129 ------EFLRTKAHLRP-------RTNTFGAVARVRNALAYATHKFFQENGFIWISSPII 175
+ +R R RT A+ R+++ + +F GF+ I +P +
Sbjct: 193 ALQTGEQLVRVGQDTRLNNRVLDLRTPANQAIFRIQSQVCNLFREFLLSKGFVEIHTPKL 252
Query: 176 TASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLN 235
A EG F L D+ +PA L S QL+
Sbjct: 253 IAGASEGGSAVF---RL---------------------------DYKGQPACLAQSPQLH 282
Query: 236 AETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDD-MACATAYLQYV 293
+ V+ GP FRAE+S T RHL EF ++ E+ + + + +
Sbjct: 283 KQMAICGDFRRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAI 342
Query: 294 VRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKW 353
+ + CK++++ + L ++L++ + I++L +A + + L
Sbjct: 343 FDGLNERCKKELEAIREQYPFEPLKYL-----PKTLRLTFAEGIQMLKEAGVEVDPL--- 394
Query: 354 GCDLQSEHERYL---TEEAFGGCPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIG 409
DL +E ER L +E +G I+ YP ++ FY M DD + + D+ + R
Sbjct: 395 -GDLNTESERKLGQLVKEKYGTDFYILHRYPLAVRPFYTMPCPDDPKYSNSFDVFI-RGE 452
Query: 410 ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYG 448
E+I G+QR E LE R +E ++ + Y+D YG
Sbjct: 453 EIISGAQRVHDPELLEKRAEECGIDVKTISTYIDSFRYG 491
|
Length = 530 |
| >gnl|CDD|238358 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 1e-15
Identities = 60/304 (19%), Positives = 101/304 (33%), Gaps = 75/304 (24%)
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIP 208
+VR+ + A F + GF+ + +P++ F V
Sbjct: 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPF---------------LVKYNA 46
Query: 209 KTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFW 268
D + S F+K L V G L V+ FR E +RH EF
Sbjct: 47 LGLDYYLRISPQLFKK--RLMVGG----------LDRVFEINRNFRNE-DLRARHQPEFT 93
Query: 269 MIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDF 328
M++ E+AFAD +D + ++++ R +L F + G F
Sbjct: 94 MMDLEMAFADYEDVIELTERLVRHLAREVLGVTAVTYGFEL--EDFG----------LPF 141
Query: 329 VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY 388
+L+Y +A+E G P+ ++DYP E+ +
Sbjct: 142 PRLTYREALERY-------------------------------GQPLFLTDYPAEMHSPL 170
Query: 389 MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDL 444
+D +A L E+ GS R + E +N + + +YL
Sbjct: 171 ASPHDVNPEIADAFDLFINGVEVGNGSSRLHDPDIQAEVFQEQGINKEAGMEYFEFYLKA 230
Query: 445 RHYG 448
YG
Sbjct: 231 LEYG 234
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. Length = 269 |
| >gnl|CDD|239766 cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 1e-15
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ +AGWV + R + FI++ DGS +Q V+ + G ++ + T + + + G
Sbjct: 2 VTLAGWVHSRRDHGGLIFIDLRDGS--GIVQVVVNKEELGEFFEEAEKLRTESVVGVTGT 59
Query: 92 VVPSQG---SKQKVELKVNKIVLVGK 114
VV + ++EL+ ++ ++ K
Sbjct: 60 VVKRPEGNLATGEIELQAEELEVLSK 85
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like AspRSs which are non-discriminating and can charge both tRNAAsp and tRNAAsn. E. coli cells have two isoforms of LysRSs (LysS and LysU) encoded by two distinct genes, which are differentially regulated. The cytoplasmic and the mitochondrial isoforms of human LysRS are encoded by a single gene. Yeast cytoplasmic and mitochondrial LysRSs participate in mitochondrial import of cytoplasmic tRNAlysCUU. In addition to their housekeeping role, human LysRS may function as a signaling molecule that activates immune cells. Tomato LysRS may participate in a process possibly connected to conditions of oxidative-stress conditions or heavy metal uptake. It is known that human tRNAlys and LysRS are specifically packaged into HIV-1 suggesting a role for LysRS in tRNA packaging. AsnRS is immunodominant antigen of the filarial nematode Brugia malayai and is of interest as a target for anti-parasitic drug design. Human AsnRS has been shown to be a pro-inflammatory chemokine which interacts with CCR3 chemokine receptors on T cells, immature dendritic cells and macrophages. Length = 85 |
| >gnl|CDD|173592 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 5e-12
Identities = 102/443 (23%), Positives = 172/443 (38%), Gaps = 88/443 (19%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTG 83
+ V +++ V T R + + F+ + DGS + D E D + G I T
Sbjct: 75 ELVDKTVLIRARVSTTRKKGKMAFMVLRDGSDSVQAMAAVEGDVPKEMIDFI--GQIPTE 132
Query: 84 ASIWIQGNVVP-----SQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE--------F 130
+ + ++ V + S +ELKV KI V +S + P + SR+
Sbjct: 133 SIVDVEATVCKVEQPITSTSHSDIELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVN 192
Query: 131 LRTKAHLR---PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQF 187
T+ + R RT GA+ R+++ + +F ++ F I SP I + EG F
Sbjct: 193 FDTRLNSRWMDLRTPASGAIFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVF 252
Query: 188 CVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA-LSNV 246
+ ++F + A+L S QL + + V
Sbjct: 253 KL------------------------------EYFNRFAYLAQSPQLYKQMVLQGDVPRV 282
Query: 247 YTFGPTFRAENSNTSRHLAEFWMIEPELA---------------FADLKDDMACATAYLQ 291
+ GP FR+ENSNT RHL EF ++ E+ F + + +A T L+
Sbjct: 283 FEVGPVFRSENSNTHRHLTEFVGLDVEMRINEHYYEVLDLAESLFNYIFERLATHTKELK 342
Query: 292 YVVR------YILDNCKEDMDFFNTW-IEKGIID------RLSTVAERDFVQLSYTDAIE 338
V + + E M I +G+ R+ + R ++++Y IE
Sbjct: 343 AVCQQYPFEPLVWKLTPERMKELGVGVISEGVEPTDKYQARVHNMDSR-MLRINYMHCIE 401
Query: 339 LLIKAKKKFEFLVKWGCDLQSEHERY---LTEEAFGGCPVIVSDYPKEIKAFY-MRQNDD 394
LL E + D+ + +E+ L +E +G I +P + FY M DD
Sbjct: 402 LL---NTVLEEKMAPTDDINTTNEKLLGKLVKERYGTDFFISDRFPSSARPFYTMECKDD 458
Query: 395 GRTVAAMDMLVPRIGELIGGSQR 417
R + DM + R E+ G+QR
Sbjct: 459 ERFTNSYDMFI-RGEEISSGAQR 480
|
Length = 550 |
| >gnl|CDD|224111 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 4e-07
Identities = 40/151 (26%), Positives = 61/151 (40%), Gaps = 17/151 (11%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVR-----YILDN 300
V+ G FR E +T H EF M+E A+AD +D M ++ + + +
Sbjct: 251 VFEIGRNFRNEGIDT-THNPEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTTKVTY 309
Query: 301 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTD--AIELLIKAKKKFEFLVKWGC--- 355
+++DF + ++D L DF L + D A EL K + E WG
Sbjct: 310 GGQEIDFSKPFKRITMVDALKEYLGVDFDDL-FDDEEAKELAKKHGIEVEKYGTWGLGHL 368
Query: 356 -DLQSEHERYLTEEAFGGCPVIVSDYPKEIK 385
+ E L E P V+D+P EI
Sbjct: 369 LNELFEE---LVEAKLIQ-PTFVTDHPVEIS 395
|
Length = 502 |
| >gnl|CDD|239818 cd04323, AsnRS_cyto_like_N, AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-06
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ V GWV LR+Q + F+ + DG+ +QCV++ L T +S+ + G
Sbjct: 2 VKVFGWVHRLRSQKKLMFLVLRDGTGF--LQCVLSKKLVTEFYDAKSL-TQESSVEVTGE 58
Query: 92 VVPSQGSKQK---VELKVNKIVLVGK 114
V +KQ EL+V+ + ++G+
Sbjct: 59 VKEDPRAKQAPGGYELQVDYLEIIGE 84
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with mitochondrial protein synthesis. AsnRS is immunodominant antigen of the filarial nematode B. malayai and of interest as a target for anti-parasitic drug design. Human AsnRS has been shown to be a pro-inflammatory chemokine which interacts with CCR3 chemokine receptors on T cells, immature dendritic cells and macrophages. Length = 84 |
| >gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 66/276 (23%), Positives = 113/276 (40%), Gaps = 40/276 (14%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
+G + +AGWV R + FI++ D S + +Q V DA+ K + +
Sbjct: 14 LGQTVTLAGWVNRRRDLGGLIFIDLRDRSGI--VQVVCDPDADALKLAKG--LRNEDVVQ 69
Query: 88 IQGNVVP-SQGSKQ------KVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTK-AHLRP 139
++G V +G+ ++E+ I L+ KS I +K + E +R K +L
Sbjct: 70 VKGKVSARPEGNINRNLDTGEIEILAESITLLNKSKTPPLIIEKTDAEEEVRLKYRYLDL 129
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREA 199
R ++R+ + A F + GF+ I +P++T S EGA + L+PS
Sbjct: 130 RRPEMQQRLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTPEGARD-----YLVPSR--- 181
Query: 200 AESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSN 259
+ K + + S F++ L VSG + Y Y FR E+
Sbjct: 182 -------VHKGEFYALPQSPQLFKQ--LLMVSG---VDRY-------YQIARCFRDEDLR 222
Query: 260 TSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVR 295
R EF I+ E++F +D M + +V
Sbjct: 223 ADRQ-PEFTQIDMEMSFMTQEDVMELIEKLVSHVFL 257
|
Asparate--tRNA ligases in this family may be discriminating (6.1.1.12) or nondiscriminating (6.1.1.23). In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences [Protein synthesis, tRNA aminoacylation]. Length = 583 |
| >gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 6e-06
Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 20/130 (15%)
Query: 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPK 209
+R+ + +F E GF + +PI+ P +A P D +P
Sbjct: 1 IRSKIEQKLRRFMAELGFQEVETPIVER---------------EPLLEKAGHEPKDLLP- 44
Query: 210 TKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTS-RHLAEFW 268
+D + +P +L + GP FR E R + EF
Sbjct: 45 VGAEN---EEDLYLRPTLEPGLVRLFVSHIRKLPLRLAEIGPAFRNEGGRRGLRRVREFT 101
Query: 269 MIEPELAFAD 278
+E E+ D
Sbjct: 102 QLEGEVFGED 111
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. Length = 211 |
| >gnl|CDD|232998 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 6e-06
Identities = 65/299 (21%), Positives = 113/299 (37%), Gaps = 72/299 (24%)
Query: 22 NEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGL 79
NE L+ + + +AG + R+ TFI + D S +Q + D E + + L
Sbjct: 46 NEELEDKNIEVSIAGRIMARRSMGKATFITLQDES--GQIQLYVNKDDLPEDFYEFDEYL 103
Query: 80 ITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS-----DPSYPI--QKKRVSREFLR 132
+ G I + G P + ++ + V ++ ++ K+ D + + Q+ R + +L
Sbjct: 104 LDLGDIIGVTGY--PFKTKTGELSVHVTELQILTKALRPLPDKFHGLTDQETRYRQRYLD 161
Query: 133 TKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTL 192
+ R TF VR+ + A +F + GFI + +P++
Sbjct: 162 LIVNPDSR-QTF----LVRSKIIKAIRRFLDDRGFIEVETPMLQV--------------- 201
Query: 193 IPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETY---ATAL------ 243
IP A +P F+T L+ + Y A L
Sbjct: 202 IPGGANA------------------------RP-FITHHNALDMDLYLRIAPELYLKRLI 236
Query: 244 ----SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYIL 298
VY G FR E +T H EF MIE A+AD +D M +++ + +L
Sbjct: 237 VGGFEKVYEIGRNFRNEGVDT-THNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQELL 294
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms [Protein synthesis, tRNA aminoacylation]. Length = 496 |
| >gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 15/167 (8%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGLITTGAS 85
VG + ++GWV R + FI++ D + +Q V + E ++ +
Sbjct: 14 VGQTVTLSGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPEDSPEAFEVASR--LRNEFV 69
Query: 86 IWIQGNVVP-SQGSKQ------KVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTK-AH 136
I + G V +G+ ++E+ +I ++ S + I+ + + E +R K +
Sbjct: 70 IQVTGTVRARPEGTINPNLPTGEIEVLAEEIEVLNASKTLPFQIEDETNASEEIRLKYRY 129
Query: 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
L R ++R+ + A F + GF+ I +PI+T S EGA
Sbjct: 130 LDLRRPEMQKNLKLRSKVTKAIRNFLDDQGFLEIETPILTKSTPEGA 176
|
Length = 585 |
| >gnl|CDD|234778 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 2e-04
Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 22/151 (14%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 302
VY G FR E +T RH EF M+E A+AD D M ++++ + +L K
Sbjct: 243 VYEIGRNFRNEGIDT-RHNPEFTMLEFYQAYADYNDMMDLTEELIRHLAQAVLGTTKVTY 301
Query: 303 --EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 360
++DF + ++D + DF ++ +A L + + E G
Sbjct: 302 QGTEIDFGPPFKRLTMVDAIKEYTGVDFDDMTDEEARALAKELGIEVEKSWGLG------ 355
Query: 361 HERYLTEEAFGGC-------PVIVSDYPKEI 384
L E F P ++DYP EI
Sbjct: 356 ---KLINELFEEFVEPKLIQPTFITDYPVEI 383
|
Length = 491 |
| >gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 2e-04
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 23/170 (13%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + + GWV R + FI++ D + +Q V DAE ++ +S + + I
Sbjct: 16 VGQTVTLCGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPDAEAFEVAES--LRSEYVIQ 71
Query: 88 IQGNVVP-SQGSKQK------VELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAH--- 136
+ G V +G+ +E+ +++ ++ KS +PI + E LR K +
Sbjct: 72 VTGTVRARPEGTVNPNLPTGEIEVLASELEVLNKSKTLPFPIDDEEDVSEELRLK-YRYL 130
Query: 137 -LR-PR-TNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
LR P ++R+ + A F +NGF+ I +PI+T S EGA
Sbjct: 131 DLRRPEMQKNL----KLRSKVTSAIRNFLDDNGFLEIETPILTKSTPEGA 176
|
Length = 588 |
| >gnl|CDD|239815 cd04320, AspRS_cyto_N, AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.001
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 15/102 (14%)
Query: 32 IVVAGWVRTLRAQSS-VTFIEVNDGSCLSNMQCVMTSDAEG-----YDQVKSGLITTGAS 85
+++ V T RAQ + + F+ + +Q V+ + AEG S ++ +
Sbjct: 2 VLIRARVHTSRAQGAKLAFLVLRQQG--YTIQGVLAASAEGVSKQMVKWAGS--LSKESI 57
Query: 86 IWIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPSYPIQ 122
+ ++G V + ++Q VEL + KI +V ++ P Q
Sbjct: 58 VDVEGTVKKPEEPIKSCTQQDVELHIEKIYVVSEAAEPLPFQ 99
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Length = 102 |
| >gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 63/271 (23%), Positives = 113/271 (41%), Gaps = 49/271 (18%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + + GWV R +TF++V D + + + + E + + +
Sbjct: 71 VGSRVTLCGWVDLHRDMGGLTFLDVRDHTGIVQVVTLPDEFPEAHRTANR--LRNEYVVA 128
Query: 88 IQGNVVPSQGSKQ--------KVELKVNKI-VL--VGKSDPSYPI----QKKRVSREFLR 132
++G V S+ + VE+ + +L V KS P + + ++K +E +R
Sbjct: 129 VEG-TVRSRPQESPNKKMKTGSVEVVAESVDILNVVTKSLP-FLVTTADEQKDSIKEEVR 186
Query: 133 TK-AHLRPRTNTFGAVARVRNALAYATHKFFQE-NGFIWISSPIITASDCEGAGEQFCVT 190
+ L R A R+R+ + ++ ++ +GF+ I +PI++ S EGA +
Sbjct: 187 LRYRVLDLRRPQMNANLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDY---- 242
Query: 191 TLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFG 250
L+PS + A+P+ S F++ L VSG + Y Y
Sbjct: 243 -LVPSRVQPGT--FYALPQ--------SPQLFKQ--MLMVSG---FDRY-------YQIA 279
Query: 251 PTFRAENSNTSRHLAEFWMIEPELAFADLKD 281
FR E+ R EF ++ ELAF L+D
Sbjct: 280 RCFRDEDLRADRQ-PEFTQLDMELAFTPLED 309
|
Length = 652 |
| >gnl|CDD|239814 cd04319, PhAsnRS_like_N, PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS) | Back alignment and domain information |
|---|
Score = 36.7 bits (85), Expect = 0.004
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIWIQ 89
+ +AGWV R FI + D + + +Q V + D E Y + K + +S+ ++
Sbjct: 2 VTLAGWVYRKREVGKKAFIVLRDSTGI--VQAVFSKDLNEEAYREAKK--VGIESSVIVE 57
Query: 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHL 137
G V + E+ K+ ++ + +PI + S EFL HL
Sbjct: 58 GAVKADPRAPGGAEVHGEKLEIIQNVEF-FPITED-ASDEFLLDVRHL 103
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Length = 103 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 464 | |||
| PLN02603 | 565 | asparaginyl-tRNA synthetase | 100.0 | |
| COG0017 | 435 | AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl | 100.0 | |
| PLN02532 | 633 | asparagine-tRNA synthetase | 100.0 | |
| PTZ00425 | 586 | asparagine-tRNA ligase; Provisional | 100.0 | |
| PLN02221 | 572 | asparaginyl-tRNA synthetase | 100.0 | |
| KOG0554 | 446 | consensus Asparaginyl-tRNA synthetase (mitochondri | 100.0 | |
| TIGR00457 | 453 | asnS asparaginyl-tRNA synthetase. In a multiple se | 100.0 | |
| PRK03932 | 450 | asnC asparaginyl-tRNA synthetase; Validated | 100.0 | |
| TIGR00458 | 428 | aspS_arch aspartyl-tRNA synthetase, archaeal type. | 100.0 | |
| PRK05159 | 437 | aspC aspartyl-tRNA synthetase; Provisional | 100.0 | |
| PTZ00401 | 550 | aspartyl-tRNA synthetase; Provisional | 100.0 | |
| PLN02850 | 530 | aspartate-tRNA ligase | 100.0 | |
| TIGR00499 | 496 | lysS_bact lysyl-tRNA synthetase, eukaryotic and no | 100.0 | |
| PLN02502 | 553 | lysyl-tRNA synthetase | 100.0 | |
| PRK12445 | 505 | lysyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK00484 | 491 | lysS lysyl-tRNA synthetase; Reviewed | 100.0 | |
| PTZ00417 | 585 | lysine-tRNA ligase; Provisional | 100.0 | |
| PTZ00385 | 659 | lysyl-tRNA synthetase; Provisional | 100.0 | |
| COG1190 | 502 | LysU Lysyl-tRNA synthetase (class II) [Translation | 100.0 | |
| KOG0556 | 533 | consensus Aspartyl-tRNA synthetase [Translation, r | 100.0 | |
| PRK02983 | 1094 | lysS lysyl-tRNA synthetase; Provisional | 100.0 | |
| TIGR00459 | 583 | aspS_bact aspartyl-tRNA synthetase, bacterial type | 100.0 | |
| KOG1885 | 560 | consensus Lysyl-tRNA synthetase (class II) [Transl | 100.0 | |
| KOG0555 | 545 | consensus Asparaginyl-tRNA synthetase [Translation | 100.0 | |
| PLN02903 | 652 | aminoacyl-tRNA ligase | 100.0 | |
| COG0173 | 585 | AspS Aspartyl-tRNA synthetase [Translation, riboso | 100.0 | |
| PRK00476 | 588 | aspS aspartyl-tRNA synthetase; Validated | 100.0 | |
| cd00776 | 322 | AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class | 100.0 | |
| PRK12820 | 706 | bifunctional aspartyl-tRNA synthetase/aspartyl/glu | 100.0 | |
| PRK06462 | 335 | asparagine synthetase A; Reviewed | 100.0 | |
| PF00152 | 335 | tRNA-synt_2: tRNA synthetases class II (D, K and N | 100.0 | |
| TIGR00462 | 304 | genX lysyl-tRNA synthetase-like protein GenX. Many | 100.0 | |
| cd00775 | 329 | LysRS_core Lys_tRNA synthetase (LysRS) class II co | 100.0 | |
| cd00669 | 269 | Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl | 100.0 | |
| PRK09350 | 306 | poxB regulator PoxA; Provisional | 100.0 | |
| KOG2411 | 628 | consensus Aspartyl-tRNA synthetase, mitochondrial | 100.0 | |
| cd00777 | 280 | AspRS_core Asp tRNA synthetase (aspRS) class II co | 100.0 | |
| COG2269 | 322 | Truncated, possibly inactive, lysyl-tRNA synthetas | 100.0 | |
| cd04317 | 135 | EcAspRS_like_N EcAspRS_like_N: N-terminal, anticod | 99.87 | |
| cd04319 | 103 | PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticod | 99.84 | |
| cd04316 | 108 | ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, a | 99.81 | |
| cd04322 | 108 | LysRS_N LysRS_N: N-terminal, anticodon recognition | 99.8 | |
| cd04320 | 102 | AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon r | 99.73 | |
| cd04318 | 82 | EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticod | 99.73 | |
| cd04321 | 86 | ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, a | 99.7 | |
| cd04323 | 84 | AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, a | 99.68 | |
| cd04100 | 85 | Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, ant | 99.66 | |
| PRK09537 | 417 | pylS pyrolysyl-tRNA synthetase; Reviewed | 99.16 | |
| cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl s | 99.04 | |
| KOG2784 | 483 | consensus Phenylalanyl-tRNA synthetase, beta subun | 99.02 | |
| PF01336 | 75 | tRNA_anti-codon: OB-fold nucleic acid binding doma | 98.98 | |
| PLN02853 | 492 | Probable phenylalanyl-tRNA synthetase alpha chain | 98.89 | |
| TIGR02367 | 453 | PylS pyrrolysyl-tRNA synthetase. PylS is the archa | 98.86 | |
| PTZ00326 | 494 | phenylalanyl-tRNA synthetase alpha chain; Provisio | 98.75 | |
| PF01409 | 247 | tRNA-synt_2d: tRNA synthetases class II core domai | 98.71 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 98.7 | |
| COG0016 | 335 | PheS Phenylalanyl-tRNA synthetase alpha subunit [T | 98.66 | |
| cd00496 | 218 | PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe | 98.57 | |
| PRK00488 | 339 | pheS phenylalanyl-tRNA synthetase subunit alpha; V | 98.56 | |
| PTZ00213 | 348 | asparagine synthetase A; Provisional | 98.51 | |
| PF00587 | 173 | tRNA-synt_2b: tRNA synthetase class II core domain | 98.4 | |
| cd00645 | 309 | AsnA Asparagine synthetase (aspartate-ammonia liga | 98.39 | |
| PLN02788 | 402 | phenylalanine-tRNA synthetase | 98.39 | |
| PRK05425 | 327 | asparagine synthetase AsnA; Provisional | 98.38 | |
| cd00773 | 261 | HisRS-like_core Class II Histidinyl-tRNA synthetas | 98.32 | |
| TIGR00468 | 294 | pheS phenylalanyl-tRNA synthetase, alpha subunit. | 98.29 | |
| cd00670 | 235 | Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t | 98.12 | |
| cd00778 | 261 | ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) | 98.11 | |
| TIGR00442 | 397 | hisS histidyl-tRNA synthetase. This model finds a | 98.04 | |
| cd00779 | 255 | ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla | 98.0 | |
| cd00772 | 264 | ProRS_core Prolyl-tRNA synthetase (ProRS) class II | 98.0 | |
| TIGR00669 | 330 | asnA aspartate--ammonia ligase, AsnA-type. The fac | 97.96 | |
| PRK00037 | 412 | hisS histidyl-tRNA synthetase; Reviewed | 97.92 | |
| TIGR00409 | 568 | proS_fam_II prolyl-tRNA synthetase, family II. Pro | 97.79 | |
| cd00771 | 298 | ThrRS_core Threonyl-tRNA synthetase (ThrRS) class | 97.77 | |
| TIGR00408 | 472 | proS_fam_I prolyl-tRNA synthetase, family I. Proly | 97.74 | |
| PRK09194 | 565 | prolyl-tRNA synthetase; Provisional | 97.74 | |
| cd00774 | 254 | GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik | 97.73 | |
| TIGR00414 | 418 | serS seryl-tRNA synthetase. This model represents | 97.69 | |
| PRK12293 | 281 | hisZ ATP phosphoribosyltransferase regulatory subu | 97.69 | |
| PRK05431 | 425 | seryl-tRNA synthetase; Provisional | 97.68 | |
| TIGR00418 | 563 | thrS threonyl-tRNA synthetase. This model represen | 97.66 | |
| PRK12305 | 575 | thrS threonyl-tRNA synthetase; Reviewed | 97.66 | |
| cd00770 | 297 | SerRS_core Seryl-tRNA synthetase (SerRS) class II | 97.64 | |
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 97.6 | |
| PRK08661 | 477 | prolyl-tRNA synthetase; Provisional | 97.6 | |
| TIGR00443 | 314 | hisZ_biosyn_reg ATP phosphoribosyltransferase, reg | 97.58 | |
| CHL00201 | 430 | syh histidine-tRNA synthetase; Provisional | 97.54 | |
| PRK12292 | 391 | hisZ ATP phosphoribosyltransferase regulatory subu | 97.53 | |
| PF13393 | 311 | tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI | 97.52 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 97.52 | |
| PRK12325 | 439 | prolyl-tRNA synthetase; Provisional | 97.51 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 97.47 | |
| PLN02530 | 487 | histidine-tRNA ligase | 97.46 | |
| PRK12420 | 423 | histidyl-tRNA synthetase; Provisional | 97.39 | |
| PLN02972 | 763 | Histidyl-tRNA synthetase | 97.36 | |
| PRK14799 | 545 | thrS threonyl-tRNA synthetase; Provisional | 97.35 | |
| PRK12421 | 392 | ATP phosphoribosyltransferase regulatory subunit; | 97.33 | |
| PLN02837 | 614 | threonine-tRNA ligase | 97.23 | |
| PRK03991 | 613 | threonyl-tRNA synthetase; Validated | 97.11 | |
| COG0124 | 429 | HisS Histidyl-tRNA synthetase [Translation, riboso | 97.1 | |
| cd04489 | 78 | ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol | 97.02 | |
| cd04487 | 73 | RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB f | 96.95 | |
| cd04478 | 95 | RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor | 96.88 | |
| PRK04173 | 456 | glycyl-tRNA synthetase; Provisional | 96.88 | |
| TIGR00470 | 533 | sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam | 96.86 | |
| PRK12295 | 373 | hisZ ATP phosphoribosyltransferase regulatory subu | 96.85 | |
| PLN02678 | 448 | seryl-tRNA synthetase | 96.65 | |
| cd04483 | 92 | hOBFC1_like hOBFC1_like: A subfamily of OB folds s | 96.4 | |
| COG0442 | 500 | ProS Prolyl-tRNA synthetase [Translation, ribosoma | 96.25 | |
| PF13742 | 99 | tRNA_anti_2: OB-fold nucleic acid binding domain | 96.23 | |
| PLN02320 | 502 | seryl-tRNA synthetase | 96.18 | |
| TIGR00469 | 460 | pheS_mito phenylalanyl-tRNA synthetase, mitochondr | 96.14 | |
| cd04482 | 91 | RPA2_OBF_like RPA2_OBF_like: A subgroup of unchara | 96.12 | |
| COG0172 | 429 | SerS Seryl-tRNA synthetase [Translation, ribosomal | 96.1 | |
| TIGR00415 | 520 | serS_MJ seryl-tRNA synthetase, Methanococcus janna | 96.06 | |
| PF10451 | 256 | Stn1: Telomere regulation protein Stn1; InterPro: | 95.71 | |
| PRK12294 | 272 | hisZ ATP phosphoribosyltransferase regulatory subu | 95.58 | |
| PRK00960 | 517 | seryl-tRNA synthetase; Provisional | 95.45 | |
| cd03524 | 75 | RPA2_OBF_family RPA2_OBF_family: A family of oligo | 95.36 | |
| cd04490 | 79 | PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds | 95.12 | |
| COG1107 | 715 | Archaea-specific RecJ-like exonuclease, contains D | 95.01 | |
| PF04076 | 103 | BOF: Bacterial OB fold (BOF) protein; InterPro: IP | 94.98 | |
| KOG2324 | 457 | consensus Prolyl-tRNA synthetase [Translation, rib | 94.95 | |
| COG3111 | 128 | Periplasmic protein with OB-fold [Function unknown | 94.87 | |
| COG5235 | 258 | RFA2 Single-stranded DNA-binding replication prote | 94.8 | |
| TIGR00156 | 126 | conserved hypothetical protein TIGR00156. As of th | 94.75 | |
| cd04485 | 84 | DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp | 94.57 | |
| PF12869 | 144 | tRNA_anti-like: tRNA_anti-like; InterPro: IPR02442 | 94.56 | |
| PRK07373 | 449 | DNA polymerase III subunit alpha; Reviewed | 94.5 | |
| COG0441 | 589 | ThrS Threonyl-tRNA synthetase [Translation, riboso | 94.39 | |
| COG2502 | 330 | AsnA Asparagine synthetase A [Amino acid transport | 94.36 | |
| cd04492 | 83 | YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol | 94.01 | |
| PRK10053 | 130 | hypothetical protein; Provisional | 93.92 | |
| PRK09616 | 552 | pheT phenylalanyl-tRNA synthetase subunit beta; Re | 93.78 | |
| PRK05672 | 1046 | dnaE2 error-prone DNA polymerase; Validated | 93.37 | |
| PRK07374 | 1170 | dnaE DNA polymerase III subunit alpha; Validated | 92.9 | |
| PRK06826 | 1151 | dnaE DNA polymerase III DnaE; Reviewed | 92.58 | |
| COG4085 | 204 | Predicted RNA-binding protein, contains TRAM domai | 92.38 | |
| PF08661 | 109 | Rep_fac-A_3: Replication factor A protein 3; Inter | 92.36 | |
| PRK05673 | 1135 | dnaE DNA polymerase III subunit alpha; Validated | 91.98 | |
| cd04479 | 101 | RPA3 RPA3: A subfamily of OB folds similar to huma | 91.81 | |
| PRK15491 | 374 | replication factor A; Provisional | 91.76 | |
| PF03100 | 131 | CcmE: CcmE; InterPro: IPR004329 CcmE is the produc | 91.75 | |
| PRK06920 | 1107 | dnaE DNA polymerase III DnaE; Reviewed | 91.49 | |
| PRK14699 | 484 | replication factor A; Provisional | 91.45 | |
| cd00769 | 198 | PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR | 90.85 | |
| PRK07279 | 1034 | dnaE DNA polymerase III DnaE; Reviewed | 89.3 | |
| PRK06461 | 129 | single-stranded DNA-binding protein; Reviewed | 88.95 | |
| cd04484 | 82 | polC_OBF polC_OBF: A subfamily of OB folds corresp | 88.37 | |
| PRK07217 | 311 | replication factor A; Reviewed | 87.95 | |
| PRK13480 | 314 | 3'-5' exoribonuclease YhaM; Provisional | 87.33 | |
| cd04491 | 82 | SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil | 87.0 | |
| PF03590 | 244 | AsnA: Aspartate-ammonia ligase; InterPro: IPR00461 | 86.12 | |
| cd04488 | 75 | RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB f | 86.0 | |
| KOG3108 | 265 | consensus Single-stranded DNA-binding replication | 85.7 | |
| COG3705 | 390 | HisZ ATP phosphoribosyltransferase involved in his | 85.47 | |
| COG1570 | 440 | XseA Exonuclease VII, large subunit [DNA replicati | 85.11 | |
| KOG1936 | 518 | consensus Histidyl-tRNA synthetase [Translation, r | 84.98 | |
| PRK02801 | 101 | primosomal replication protein N; Provisional | 83.89 | |
| KOG1035 | 1351 | consensus eIF-2alpha kinase GCN2 [Translation, rib | 82.99 | |
| cd04474 | 104 | RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds cor | 82.52 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 82.43 | |
| PRK00286 | 438 | xseA exodeoxyribonuclease VII large subunit; Revie | 82.12 | |
| PRK07218 | 423 | replication factor A; Provisional | 81.89 | |
| KOG2509 | 455 | consensus Seryl-tRNA synthetase [Translation, ribo | 81.74 | |
| PRK13150 | 159 | cytochrome c-type biogenesis protein CcmE; Reviewe | 81.41 | |
| COG1571 | 421 | Predicted DNA-binding protein containing a Zn-ribb | 80.98 | |
| PRK12366 | 637 | replication factor A; Reviewed | 80.95 | |
| PRK13165 | 160 | cytochrome c-type biogenesis protein CcmE; Reviewe | 80.88 | |
| TIGR00237 | 432 | xseA exodeoxyribonuclease VII, large subunit. This | 80.59 | |
| PRK13254 | 148 | cytochrome c-type biogenesis protein CcmE; Reviewe | 80.3 | |
| PRK14699 | 484 | replication factor A; Provisional | 80.17 |
| >PLN02603 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-105 Score=842.75 Aligned_cols=460 Identities=86% Similarity=1.335 Sum_probs=416.4
Q ss_pred CcccccceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCc
Q 012426 5 VGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGA 84 (464)
Q Consensus 5 ~~~~~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~ 84 (464)
.+++..+++|+++......+....|++|+|+|||+++|.+|+++|++|+||++..+||||++++...++.++.+.|+.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~iR~~g~~~Fi~l~Dgs~~~~lQ~v~~~~~~~~~~l~~~~l~~gs 162 (565)
T PLN02603 83 VGEFRKKLRIADVKGGEDEGLARVGKTLNVMGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTPDAEGYDQVESGLITTGA 162 (565)
T ss_pred ccccCCceEhhhcccccccccccCCCEEEEEEEEEEEEeCCCeEEEEEECCCCCEeEEEEEECcHHHHHHHhhcCCCCCC
Confidence 45666778999998432233457799999999999999999999999999998668999998776566665422399999
Q ss_pred EEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCccccchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhh
Q 012426 85 SIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 164 (464)
Q Consensus 85 ~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~ 164 (464)
+|.|+|+|+++++++|.+||++++++||++|++++|++.+.++.+++|.++|||+|++.+++++|+||++++++|+||.+
T Consensus 163 ~V~V~G~v~~~~~~~~~~EL~v~~i~vlg~a~~~~Pi~~~~~s~e~lr~~~hLr~Rt~~~~ai~RiRS~i~~air~ff~~ 242 (565)
T PLN02603 163 SVLVQGTVVSSQGGKQKVELKVSKIVVVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 242 (565)
T ss_pred EEEEEEEEEecCCCCccEEEEEeEEEEEECCCCCCCCcccccchhhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888999999999999998789999888999999999999999999999999999999999999999
Q ss_pred CCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHHHHhhccC
Q 012426 165 NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALS 244 (464)
Q Consensus 165 ~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~ 244 (464)
+||+||+||+|++++|||++++|.||+..+...|+.++...++|++..+..+++.+||++++||+||||||+|++++|++
T Consensus 243 ~gF~eV~TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~QL~~E~~~~~l~ 322 (565)
T PLN02603 243 NGFVWVSSPIITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGETYATALS 322 (565)
T ss_pred CCCEEEECCeecccCCCccccCceeeeccccccccccccccccccCcccccccchhhhCcceeeccCchHHHHHHHhccc
Confidence 99999999999999999999999998866544444333334455555555666778999999999999999999999999
Q ss_pred ceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhh
Q 012426 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA 324 (464)
Q Consensus 245 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 324 (464)
|||+||||||||+++|+|||+||||||+||+|+|++|+|+++|++|+++++.++++|.++|++.+++.+.++.+.++..+
T Consensus 323 rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af~dl~d~m~~~E~~l~~~~~~v~~~~~~el~~~~~~~~~~~~~~l~~~~ 402 (565)
T PLN02603 323 DVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILENCKEDMEFFNTWIEKGIIDRLSDVV 402 (565)
T ss_pred ceEEEecceeCCCCCCccccccceeeeeeeecCCHHHHHHHHHHHHHHHHHHHHcccHhHHHhcCCcccccHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888889998888
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccCCCCCceeeEEEe
Q 012426 325 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDML 404 (464)
Q Consensus 325 ~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~ 404 (464)
+.||++|||+||+++|++.+.+++.+++||.+|+.++|++|++.+++++||||+|||+.++||||++++|+++++||||+
T Consensus 403 ~~~f~rity~EAi~iL~~~~~~~~~~~~~g~dl~~e~Er~L~~~~~~~~PvfVtdyP~~ikpFYm~~~~d~~~v~~fDLl 482 (565)
T PLN02603 403 EKNFVQLSYTDAIELLLKAKKKFEFPVKWGLDLQSEHERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDML 482 (565)
T ss_pred CCCCCCCCHHHHHHHHHHhccccCCCCCccccccHHHHHHHHHHhccCCCEEEECCccccCccccccCCCCCeeEEEEEE
Confidence 88999999999999999987767667899999999999999987765479999999999999999988889999999999
Q ss_pred eCCccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 405 VPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 405 ~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
+||+|||++|+||+|++++|.++|+++|+++++|+|||++++||+ | |+|+++|.+|||||
T Consensus 483 ~p~~gEl~gGsqRe~r~e~L~~~~~e~g~~~e~y~wYLdl~r~G~pPhgGfGlG~ERLvm~ltg~~nIRdv 553 (565)
T PLN02603 483 VPRVGELIGGSQREERLEYLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDA 553 (565)
T ss_pred ecCceEecCHHHHHhhHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCceeEEcHHHHHHHHhCCCchhhe
Confidence 999999999999999999999999999999999999999999998 3 99999999999996
|
|
| >COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-103 Score=792.27 Aligned_cols=405 Identities=44% Similarity=0.739 Sum_probs=372.0
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc---cchhhhhcCCCCCCcEE
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASI 86 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V 86 (464)
.+++++++... ..++.|+|+|||+++|..|+++||.||||+|+ ||||++++. ..++ +++ |+.||+|
T Consensus 3 ~~~~i~di~~~------~~~~~V~v~GWV~~~R~~g~i~Fi~lrDgsg~--iQ~v~~~~~~~~~~~~-~~~--L~~es~v 71 (435)
T COG0017 3 KRTYIKDIKPH------VGGQEVTVRGWVHNKRDLGKIIFLVLRDGSGF--IQAVVPKNKVYEELFK-AKK--LTLESSV 71 (435)
T ss_pred ceeeHHhhhcc------CCCcEEEEEEEeeeecccCCeEEEEEEcCCcE--EEEEEECCCCcHHHhh-hhc--CCCccEE
Confidence 46788888874 34499999999999999999999999999997 999998642 2345 778 9999999
Q ss_pred EEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCccccc-hhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhC
Q 012426 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS-REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 165 (464)
Q Consensus 87 ~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~~~-~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~ 165 (464)
.|+|+|++++.+.|++||++++|+|++.+.+++|++++.++ +++++++|||++|++...++|++||.+++++|+||.++
T Consensus 72 ~V~G~v~~~~~a~~g~El~v~~i~Vl~~a~~~~Pi~~~~~~~~e~lld~rhL~lR~~~~~Av~kirs~i~~a~~eff~~~ 151 (435)
T COG0017 72 VVTGIVKASPKAPQGFELQVEKIEVLGEADPPYPIDKKEHSELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYEN 151 (435)
T ss_pred EEEEEEEcCCCCCCCEEEEEEEEEEeeccCCCCCcCcccccCHHHHHhchheeccccchHHHHhHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999767999999986 99999999999999999999999999999999999999
Q ss_pred CcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHHHHhhccCc
Q 012426 166 GFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSN 245 (464)
Q Consensus 166 gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~r 245 (464)
||+||+||+|+++++||++++|.+ +||+.++||+||||||+|+++++++|
T Consensus 152 gF~eV~tP~i~~~~~EGg~elF~v------------------------------~yf~~~a~LtqS~QLyke~~~~al~r 201 (435)
T COG0017 152 GFTEVHTPIITASATEGGGELFKV------------------------------DYFDKEAYLTQSPQLYKEALAAALER 201 (435)
T ss_pred CcEEecCceEeccCCCCCceeEEE------------------------------eecCcceEEecCHHHHHHHHHHHhCc
Confidence 999999999999999999999987 58999999999999999998888999
Q ss_pred eEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhC
Q 012426 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE 325 (464)
Q Consensus 246 VfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~ 325 (464)
||+|||+||||+++|+|||+||||+|.||+|++++|+|+++|+||+++++.++++|.++|++++.. . ..+.....
T Consensus 202 Vf~igP~FRAE~s~T~RHL~EF~~ld~Emaf~~~~d~m~l~E~~i~~i~~~v~e~~~~el~~l~~~--~---~~l~~~~~ 276 (435)
T COG0017 202 VFTIGPTFRAEKSNTRRHLSEFWMLDPEMAFADLNDVMDLAEELIKYLFKKVLEECADELEFLGRD--N---SELKRPES 276 (435)
T ss_pred eEEecCceecCCCCCcchhhhHheecceeccCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc--c---hhhccccc
Confidence 999999999999999999999999999999999999999999999999999999999999887641 1 12221114
Q ss_pred CCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccCCC-CCceeeEEEe
Q 012426 326 RDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDML 404 (464)
Q Consensus 326 ~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~~d-~~~~~~fdl~ 404 (464)
.||+||||+||+++|++.|.+. +.||+||++++|++|++.++. .|+||||||++++||||++++| |+++.+|||+
T Consensus 277 ~pf~ritY~eAieiL~~~~~e~---~~~GdDl~~e~Er~l~e~~~~-~~vfv~~yP~~~kpFYm~~~~d~p~~~~~~Dll 352 (435)
T COG0017 277 APFPRITYKEAIEILEEKGFEK---VEWGDDLGTEHERYLGEEYFK-PPVFVTNYPKEIKPFYMRPDPDNPGTVASFDLL 352 (435)
T ss_pred CCccEEEHHHHHHHHHhcCCcc---cCCCCccCCHHHHHHHHHhCC-CcEEEEeCcccccccccccCCCCCCeEEEEeee
Confidence 6899999999999999887653 689999999999999988765 5799999999999999988765 4999999999
Q ss_pred eCCccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 405 VPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 405 ~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
+||+|||+||+||+||++.|.+||+++|+|++.|+||||++|||+ | |+|+++|..|||||
T Consensus 353 ~p~~gEIigGsqRe~~~d~L~~ri~~~gl~~e~~~wYld~~kyG~~PHaGfGlG~ERlv~~i~gl~nIRea 423 (435)
T COG0017 353 APGGGEIIGGSQREHDYDLLVERIKEKGLDPESYEWYLDLRKYGMPPHAGFGLGLERLVMYILGLDNIREA 423 (435)
T ss_pred cCCceeeecceeccccHHHHHHHHHHcCCChHHhHHHHHHHHcCCCCCcccccCHHHHHHHHhCCCcceec
Confidence 998899999999999999999999999999999999999999998 2 99999999999997
|
|
| >PLN02532 asparagine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-99 Score=796.20 Aligned_cols=455 Identities=43% Similarity=0.805 Sum_probs=397.5
Q ss_pred CcccccceecccccCCCCCCCCCCCCEEEEEEEEeeeecC----------------------------------------
Q 012426 5 VGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQ---------------------------------------- 44 (464)
Q Consensus 5 ~~~~~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~---------------------------------------- 44 (464)
..+|++++.++.|+...+++...+|+.|.|.|||++.+..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (633)
T PLN02532 23 PSKYSNRVVLKTILGRSDGGAGLVGKRVVVGGWVKSAKEVKKEPAPPPPPQSPSSAGDQSPGHKDVRCTEILQSRVPIFR 102 (633)
T ss_pred chhccceeeeeeecccCCCccccccceEEecceehhhHHhhcCCCCCCCCCCCCCCCCCCCCcCCcchhHHHhhhcHHHH
Confidence 4679999999999998888888999999999999876542
Q ss_pred ------------------------------CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEe
Q 012426 45 ------------------------------SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVP 94 (464)
Q Consensus 45 ------------------------------g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~ 94 (464)
|+++||+||||||.+++|||++++...+. +. |+.|++|.|+|+|+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~g~i~FI~LrDGSg~~~lQvVv~~~~~~~~--~~--L~~Es~V~V~G~V~~ 178 (633)
T PLN02532 103 SIAKVLSGGGSTYPVREKTEIAIQKSAPPPPSVAYLLISDGSCVASLQVVVDSALAPLT--QL--MATGTCILAEGVLKL 178 (633)
T ss_pred HHHHHHcCCCCCCCcccccccccccccccCCCcEEEEEECCCCccceEEEEeCCcccHh--hc--CCCceEEEEEEEEEe
Confidence 28899999999998889999987643332 45 999999999999998
Q ss_pred CCC--CCceEEEEEeeEEEEecCC-CCCCCCccccchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhCCcEEEe
Q 012426 95 SQG--SKQKVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWIS 171 (464)
Q Consensus 95 ~~~--~~~~~el~~~~i~vls~~~-~~~P~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~ 171 (464)
++. ..+++||.+++|+||+++. .+||++.+.+++|++|++||||+|++.++++||+||++.+++|+||.++||+||+
T Consensus 179 ~~~~~~~g~iEl~v~~i~VLg~a~~~p~Pi~~k~~~~E~LR~~RhLdLRt~~~~ailRiRS~i~~aiR~ff~~~GFiEV~ 258 (633)
T PLN02532 179 PLPAQGKHVIELEVEKILHIGTVDPEKYPLSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQ 258 (633)
T ss_pred cCCCCCCCcEEEEeeEEEEEecCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEee
Confidence 843 3677999999999999986 4599998888999999999999999999999999999999999999999999999
Q ss_pred CceEeecCCCCCCCCceeeecCCCccc--------c-cC-C-------------CCCCC---------------------
Q 012426 172 SPIITASDCEGAGEQFCVTTLIPSSRE--------A-AE-S-------------PVDAI--------------------- 207 (464)
Q Consensus 172 TP~L~~~~~eg~~~~F~vt~~~~~~~~--------~-~~-~-------------~~~~~--------------------- 207 (464)
||+|++++|||++++|+|+++...+.+ . ++ + .++.+
T Consensus 259 TPiLT~s~~EGa~elF~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (633)
T PLN02532 259 VPIITTTDATGFGEMFRVTTLLGKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDLRKTN 338 (633)
T ss_pred CCeecccCCCccccccceeccccccccccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccc
Confidence 999999999999999999875321100 0 00 0 01010
Q ss_pred ---------------CCCCCCCccccccccCcccccccchhHHHHHHhhccCceEEEccccccCCCCCccccccchhccc
Q 012426 208 ---------------PKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEP 272 (464)
Q Consensus 208 ---------------~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~ 272 (464)
++.+.+..+++.+||++++||+||||||||++++||+|||+|||+||||+++|+|||+||||||+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~f~~dyFg~~ayLtqS~QLylE~~~~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE~ 418 (633)
T PLN02532 339 QLASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESYACALGNVYTFGPRFRADRIDSARHLAEMWMVEV 418 (633)
T ss_pred cccccccccccccccccccccccccccccCCCCeeeccCHHHHHHHHHHhcCceEEEccceecCCCCCCcccccccceee
Confidence 11123345567799999999999999999998899999999999999999999999999999999
Q ss_pred eeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhc-CCCcccCC
Q 012426 273 ELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA-KKKFEFLV 351 (464)
Q Consensus 273 e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~-~~~~~~~~ 351 (464)
||+|+||+|+|+++|+||+++++.++++|.++|+++++.......+.++..+..||+||||.||+++|++. +.+++.++
T Consensus 419 Emaf~d~~dvM~l~E~lI~~v~k~v~~~~~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~~~~~~~e~~~ 498 (633)
T PLN02532 419 EMAFSELEDAMNCAEDYFKFLCKWVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDKKFETKP 498 (633)
T ss_pred eehhcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHHhcCCCccccc
Confidence 99999999999999999999999999999999988875444445566666677899999999999999876 34455567
Q ss_pred CccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHc
Q 012426 352 KWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL 431 (464)
Q Consensus 352 ~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~ 431 (464)
+||.||+.++|++|++.+++ .|+||+|||..++||||++++|+++++|||||+||+|||+||++|+|+++.|.++++++
T Consensus 499 ~~g~dL~~e~Er~L~~~~~~-~PvFVtdyP~~ikPFY~~~~~d~~~v~~FDLlvp~~GEIigGsqRE~r~e~L~~~~ke~ 577 (633)
T PLN02532 499 EWGIALTTEHLSYLADEIYK-KPVIIYNYPKELKPFYVRLNDDGKTVAAFDLVVPKVGTVITGSQNEERMDILNARIEEL 577 (633)
T ss_pred ccCCccChHHHHHHHHHHcC-CCEEEECCChhhchhhCCcCCCCCceEEEEEecCCCeEEeeCcEeHHHHHHHHHHHHHc
Confidence 89999999999999987666 89999999999999999998888999999999999899999999999999999999999
Q ss_pred CCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 432 KLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 432 g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
|++++.|+|||++++||+ | |+|++||.+|||||
T Consensus 578 Gld~e~~ewYLdlrryG~pPHgGfGLG~ERLvm~ltGl~nIRDv 621 (633)
T PLN02532 578 GLPREQYEWYLDLRRHGTVKHSGFSLGFELMVLFATGLPDVRDA 621 (633)
T ss_pred CCChhhHHHHHHHHHcCCCCCeEEEEhHHHHHHHHhCCCchheE
Confidence 999999999999999998 3 99999999999996
|
|
| >PTZ00425 asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-98 Score=788.76 Aligned_cols=451 Identities=47% Similarity=0.851 Sum_probs=385.9
Q ss_pred ceecccccCCCCC---------CCCCCCCEEEEEEEEeeeecCC--CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCC
Q 012426 11 KLKIVDVKGGPNE---------GLDRVGLMIVVAGWVRTLRAQS--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGL 79 (464)
Q Consensus 11 ~~~i~~l~~~~~~---------~~~~~~~~V~v~GwV~~iR~~g--~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~ 79 (464)
++.|..++..+.. ....+|+.|+|+|||+++|++| +++|++||||+|...+|||+++....++.+++
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vtl~GWv~~iR~~g~~~~~Fv~lrDgsg~~~iQiVv~~~~~~~~~l~~-- 131 (586)
T PTZ00425 54 RIRICNVLNVPKSEKEFNDNSRKNKYIDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQSIENYEKLLK-- 131 (586)
T ss_pred ceeeehhccCccccccccccccccccCCCEEEEEEEEeehhhcCCceEEEEEEECCCCCcceEEEECCchHHHHHHhc--
Confidence 5666666653221 2345799999999999999997 49999999999867899999866455667778
Q ss_pred CCCCcEEEEEEEEEeCCCC--------CceEEEEE-----eeEEEEecCC-C-CCCCCccccchhhhhhcceecCCCccc
Q 012426 80 ITTGASIWIQGNVVPSQGS--------KQKVELKV-----NKIVLVGKSD-P-SYPIQKKRVSREFLRTKAHLRPRTNTF 144 (464)
Q Consensus 80 l~~g~~V~V~G~v~~~~~~--------~~~~el~~-----~~i~vls~~~-~-~~P~~~~~~~~~~~r~~r~l~~R~~~~ 144 (464)
|+.|++|.|+|+|+.++.+ .+.+||.+ ++++||+++. + +||++++.++.+++|++||||+|++.+
T Consensus 132 l~~gs~v~v~G~v~~~~~~~~n~~g~~~~~~El~~~~~~~~~~~ilg~~~d~~~yPi~~k~~~~e~lr~~rhL~lR~~~~ 211 (586)
T PTZ00425 132 CGVGCCFRFTGKLIISPVQNENKKGLLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKNHGKEFLREVAHLRPRSYFI 211 (586)
T ss_pred CCCccEEEEEEEEEcCCccccCcCCCCCccEEEEEecCCCceEEEEeccCCCCCCCCCCccCChhhhhhccceeccCHHH
Confidence 9999999999999976533 35699998 7999999983 2 499998889999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCC--------------------cccc-----
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPS--------------------SREA----- 199 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~--------------------~~~~----- 199 (464)
+++||+||++..++|+||.++||+||+||+|++++|||++++|.|++...+ +++.
T Consensus 212 ~avlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~~EGa~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 291 (586)
T PTZ00425 212 SSVIRIRNALAIATHLFFQSRGFLYIHTPLITTSDCEGGGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNA 291 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCCCCCcceEEeeeccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999754210 0000
Q ss_pred ---cCCC----CCCCCCCC-CCCccccccccCcccccccchhHHHHHHhhccCceEEEccccccCCCCCccccccchhcc
Q 012426 200 ---AESP----VDAIPKTK-DGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIE 271 (464)
Q Consensus 200 ---~~~~----~~~~~~~~-~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE 271 (464)
+.++ ....++.. .+..+.+.+||++++||+||||||||++++|++|||+||||||||+++|+|||+||||||
T Consensus 292 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~yF~k~ayL~~S~QLylE~~~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE 371 (586)
T PTZ00425 292 NNNNGNSSSSNAVSSPAYPDQYLIDYKKDFFSKQAFLTVSGQLSLENLCSSMGDVYTFGPTFRAENSHTSRHLAEFWMIE 371 (586)
T ss_pred cccccccccccccccccccccccccccccccCcceEEEcCchHHHHHHHhccCCEEEEeceEeCCCCCCCCCCcccceEE
Confidence 0000 00001111 122334568999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCC
Q 012426 272 PELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLV 351 (464)
Q Consensus 272 ~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~ 351 (464)
+||+|+|++++|+++|++|+++++.+++.|.++|.+++.....++.+.|+..++.||++|||+||+++|++.+..++.++
T Consensus 372 ~E~af~d~~d~m~~~E~li~~v~~~vl~~~~~~i~~~~~~~~~~l~~~l~~~~~~pf~rIty~EAi~iL~~~~~~~~~~~ 451 (586)
T PTZ00425 372 PEIAFADLYDNMELAESYIKYCIGYVLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNVIDLLQPYSDSFEVPV 451 (586)
T ss_pred EEEecCCHHHHHHHHHHHHHHHHHHHhcccccccccccccccccHHHHHHHhcCCCCCcCCHHHHHHHHHHhHHhcCCCC
Confidence 99999999999999999999999999999988888776444455677777777889999999999999998765444567
Q ss_pred CccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHc
Q 012426 352 KWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL 431 (464)
Q Consensus 352 ~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~ 431 (464)
+||.+|+.++|++|++.++. .||||||||++++||||+.++|+.++++|||++||+|||++|++|+|+++.|.++++++
T Consensus 452 ~~G~dL~~e~Er~L~~~~~~-~PvFItdyP~~~kPFY~~~~~d~~~v~~fDLlvpgiGEI~gGsqRe~~~e~L~~~ike~ 530 (586)
T PTZ00425 452 KWGMDLQSEHERFVAEQIFK-KPVIVYNYPKDLKAFYMKLNEDQKTVAAMDVLVPKIGEVIGGSQREDNLERLDKMIKEK 530 (586)
T ss_pred CcccccchHHHHHHHHHhcC-CcEEEECCccccCccccCcCCCCCeEEEEeEEccCceEEccCCCccccHHHHHHHHHHc
Confidence 89999999999999986555 79999999999999999888888899999999999999999999999999999999999
Q ss_pred CCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 432 KLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 432 g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
|++++.|+|||++++||+ | |+|++||.+|||||
T Consensus 531 gl~~e~~~wYLd~rryG~pPhgGfGLGiERLvm~ltGl~nIRDv 574 (586)
T PTZ00425 531 KLNMESYWWYRQLRKFGSHPHAGFGLGFERLIMLVTGVDNIKDT 574 (586)
T ss_pred CCChhHHHHHHHHhhCCCCCCceEEEcHHHHHHHHcCCCchheE
Confidence 999999999999999998 3 99999999999996
|
|
| >PLN02221 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-98 Score=791.66 Aligned_cols=455 Identities=53% Similarity=0.901 Sum_probs=390.2
Q ss_pred CcccccceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCC--eEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCC
Q 012426 5 VGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSS--VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITT 82 (464)
Q Consensus 5 ~~~~~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~--~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~ 82 (464)
.+.|+.+.+|++++....++...+|+.|+|+|||+++|.+|+ ++||+|||+++.+.||||++++.. ...+. |+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~g~~V~I~GWV~~iR~~Gk~~i~Fl~LRDgs~~g~iQvVv~~~~~--~~~~~--L~~ 101 (572)
T PLN02221 26 KAQFSDRVLIRSILDRPDGGAGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVMVDSSLY--DLSTL--VAT 101 (572)
T ss_pred cccccCceEHHHHhccccCChhcCCCEEEEEEEEEehhhCCCceEEEEEEeCCcccccEEEEEcCchh--hHHhc--CCC
Confidence 456778889999986544556788999999999999999985 899999999954569999986532 22245 999
Q ss_pred CcEEEEEEEEEeCCC---CCceEEEEEeeEEEEecCCC-CCCCCccccchhhhhhcceecCCCccchhhhhHHHHHHHHH
Q 012426 83 GASIWIQGNVVPSQG---SKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYAT 158 (464)
Q Consensus 83 g~~V~V~G~v~~~~~---~~~~~el~~~~i~vls~~~~-~~P~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~ 158 (464)
||+|.|+|+|+.++. ..|++||++++|+|+|+|.+ ++|++.+.++.+++|+++|||+|++.++++||+||++.+++
T Consensus 102 ES~V~V~G~V~~~~~~~~~~~~iEl~v~~i~vl~~a~~~~~Pi~~~~~~~e~lrr~~hLR~R~~~~~Ai~RiRS~i~~ai 181 (572)
T PLN02221 102 GTCVTVDGVLKVPPEGKGTKQKIELSVEKVIDVGTVDPTKYPLPKTKLTLEFLRDVLHLRSRTNSISAVARIRNALAFAT 181 (572)
T ss_pred ceEEEEEEEEEeCCccCCCCccEEEEEeEEEEEecCCCCCCCCCCCcCChHHHhhcchhhcCCHHHHHHHHHHHHHHHHH
Confidence 999999999998763 34689999999999999964 69999888899999999999999999999999999999999
Q ss_pred HHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcc----------------------------------cccCC--
Q 012426 159 HKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSR----------------------------------EAAES-- 202 (464)
Q Consensus 159 r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~----------------------------------~~~~~-- 202 (464)
|+||.++||+||+||+|++++|||++++|+|+++..... |.+.+
T Consensus 182 R~ff~~~gFiEI~TP~Lt~s~~EGg~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (572)
T PLN02221 182 HSFFQEHSFLYIHTPIITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAKASK 261 (572)
T ss_pred HHHHHHCCCEEEeCCeeccccCCCCccceeeeecccccccccccccccCcccchhhhhhhhhhhhhcchhhhhhccccch
Confidence 999999999999999999999999999999976431000 00000
Q ss_pred ---------------CC---CC----C--CCCCCCCccccccccCcccccccchhHHHHHHhhccCceEEEccccccCCC
Q 012426 203 ---------------PV---DA----I--PKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENS 258 (464)
Q Consensus 203 ---------------~~---~~----~--~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~rVfeI~~~FR~E~~ 258 (464)
.. +. . .....+..+++.+||++++||+||||||||++++|++|||+||||||||++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dyFg~~ayLtqS~QLy~e~~~~~l~rVfeIgP~FRAE~s 341 (572)
T PLN02221 262 EEITAAVAELKIAKESLAHIEERSKLKPGLPKKDGKIDYSKDFFGRQAFLTVSGQLQVETYACALSSVYTFGPTFRAENS 341 (572)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhcccCCcccccccccccccCCCCeeeccCHHHHHHHHHHhcCCeEEEccceecCCC
Confidence 00 00 0 001234455677899999999999999999999999999999999999999
Q ss_pred CCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHH
Q 012426 259 NTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIE 338 (464)
Q Consensus 259 ~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~ 338 (464)
+|+||||||||||+||+|.|++|+|+++|+||+++++.+.++|.+++.++.........+.|+..+..||+||||.||++
T Consensus 342 ~T~RHL~EFtmlE~Emaf~d~~dvm~l~E~lv~~i~~~l~~~~~~~l~~l~~~~~~~~~~~l~~~~~~pf~RIty~EAi~ 421 (572)
T PLN02221 342 HTSRHLAEFWMVEPEIAFADLEDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAIE 421 (572)
T ss_pred CCCcccccccceeeeeecCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCchhhhhhhhccCCCceEEEHHHHHH
Confidence 99999999999999999999999999999999999999999998888776543333345566656678999999999999
Q ss_pred HHHhc---CCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccCCCCCceeeEEEeeCCccccccCc
Q 012426 339 LLIKA---KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGS 415 (464)
Q Consensus 339 ~l~~~---~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~ 415 (464)
+|++. |.+++.++.||.+|+.++|++|++.++. +|+||+|||..++||||+.++|+.+++|||||++|+|||++|+
T Consensus 422 ~L~~~~~~g~~~~~~~~~G~dl~~e~Er~L~~~~~~-~pvfv~dyP~~~~pfy~~~~~d~~~~~~fDLl~~g~~El~~g~ 500 (572)
T PLN02221 422 LLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQ-KPLIVYNYPKGIKAFYMRLNDDEKTVAAMDVLVPKVGELIGGS 500 (572)
T ss_pred HHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHhcC-CcEEEEcCChhhCcccccCCCCCceEEEEEEecCCceEECCHH
Confidence 99884 5445445689999999999999886555 8999999999999999988778889999999999999999999
Q ss_pred cccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 416 QREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 416 ~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
+|+|+++.+.++++++|+++..|+|||++++||+ | |+|+++|.+|||||
T Consensus 501 ~R~~r~e~l~~~~~~~g~~~~~~~~yLda~~~G~pPh~G~GlGiERLvm~l~g~~nIRdv 560 (572)
T PLN02221 501 QREERYDVIKQRIEEMGLPIEPYEWYLDLRRYGTVKHCGFGLGFERMILFATGIDNIRDV 560 (572)
T ss_pred HHHHHHHHHHHHHHHcCCChhhhHHHHHHhhCCCCCCceEEEeHHHHHHHHcCCCchheE
Confidence 9999999999999999999999999999999998 3 99999999999986
|
|
| >KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-97 Score=727.10 Aligned_cols=405 Identities=57% Similarity=0.942 Sum_probs=383.4
Q ss_pred CCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEE
Q 012426 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELK 105 (464)
Q Consensus 26 ~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~ 105 (464)
...|+++.|.|||+++|..|+++|++|+||++.+++|||+++. +.+. +..|++|.|+|.+..++.+++++|+.
T Consensus 17 ~~~g~~~~i~GWvKsvr~~~~~~Fl~i~DGs~~~~lQvVv~~~-----~~q~--la~Gt~i~~~g~l~~~~~~~q~iel~ 89 (446)
T KOG0554|consen 17 PRAGDTISIGGWVKSVRKLKKVTFLDINDGSCPSPLQVVVDSE-----QSQL--LATGTCISAEGVLKVSKGAKQQIELN 89 (446)
T ss_pred CCCCCceeecchhhhcccccceEEEEecCCCCCcceEEEechH-----Hhhh--ccccceEEEEeeEEeccchheeeeee
Confidence 5679999999999999999999999999999999999999973 2345 99999999999999998888999999
Q ss_pred EeeEEEEecCCCCCCCCccccchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCC
Q 012426 106 VNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGE 185 (464)
Q Consensus 106 ~~~i~vls~~~~~~P~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~ 185 (464)
+++|.+.+.++++||++++.++++++|+.+|||.|++...+++|+||++..++|.||++++|++|+||+||+++|||+++
T Consensus 90 ~eki~~vG~v~~~ypl~Kk~lt~e~LR~~~HLR~Rt~~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DCEGaGE 169 (446)
T KOG0554|consen 90 AEKIKVVGTVDESYPLQKKKLTPEMLRDKLHLRSRTAKVGAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDCEGAGE 169 (446)
T ss_pred eeEEEEEeecCCCCCCccccCCHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCCCCCcc
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHHHHhhccCceEEEccccccCCCCCccccc
Q 012426 186 QFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLA 265 (464)
Q Consensus 186 ~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~rVfeI~~~FR~E~~~t~rHl~ 265 (464)
+|+||+..+ ++++||++|+||++|.|||++.++++++|||++||+||||+++|+|||+
T Consensus 170 ~F~vtt~~d----------------------~~~~fFg~p~fLTVSgQLhlE~~a~~LsrvyTfgP~FRAEnS~tsRHLA 227 (446)
T KOG0554|consen 170 VFQVTTLTD----------------------YSKDFFGRPAFLTVSGQLHLEAMACALSRVYTFGPTFRAENSHTSRHLA 227 (446)
T ss_pred eEEEEecCc----------------------ccccccCCceEEEEeceehHHHHHhhhcceEeeccceecccCCchhHHh
Confidence 999987532 5679999999999999999999999999999999999999999999999
Q ss_pred cchhccceeccCC-HHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcC
Q 012426 266 EFWMIEPELAFAD-LKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK 344 (464)
Q Consensus 266 EFtmlE~e~a~~~-~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~ 344 (464)
||||||.|+||++ ++|+|+++|.+++++++.++++|.+++++..++........++..+..+|.+|||+||+++|++..
T Consensus 228 EFwMlEaE~AF~~sl~d~m~~~e~~~K~mik~llek~~edmel~~k~~~~~~~~rl~~~~~~~~~~~tYteAie~L~~a~ 307 (446)
T KOG0554|consen 228 EFWMLEAELAFAESLDDLMSCAEAYIKHMIKYLLEKCIEDMELMHKNEDPGSIDRLELVAKENLLRITYTEAIELLQKAV 307 (446)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhheeccccCCCccchhhhhccchhhhccHHHHHHHHHHhc
Confidence 9999999999998 999999999999999999999999999999888888888899888888899999999999999987
Q ss_pred -CCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHH
Q 012426 345 -KKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEY 423 (464)
Q Consensus 345 -~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~ 423 (464)
..|+.+++||.+|+++||++|++.+++ .||||+|||+.++||||+.++++.++.+|||++||||||+|||+||.+
T Consensus 308 t~~fk~~~kwG~~l~~ehe~yL~~~~~~-~PVfV~dYP~~iKpFYMr~n~~~~tVaa~DlLVP~vGEliGGSlREe~--- 383 (446)
T KOG0554|consen 308 TKKFKTPPKWGIDLSTEHEKYLVEECFK-KPVFVTDYPKGIKPFYMRLNDDGKTVAAFDLLVPGVGELIGGSLREER--- 383 (446)
T ss_pred ccccccCcccccccchhhHHHHHHHhcC-CCEEEEeccccccceEEEecCCCCeeEEEEeecccchhhcCcccchhh---
Confidence 678889999999999999999998876 899999999999999999999888999999999999999999999999
Q ss_pred HHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 424 LEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 424 l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
.+|+++.|+.++.|+||||+||||. | ++.+++|.+||||.
T Consensus 384 -~~~l~e~g~~~~~~eWYldLRryG~vphgGFGlGfER~lq~~tG~~nIkd~ 434 (446)
T KOG0554|consen 384 -KARLKERGLTREELEWYLDLRRYGSVPHGGFGLGFERMLQYLTGNDNIKDV 434 (446)
T ss_pred -HHHHHhcCCCccccceehhhhhcCCCCCCcccccHHHHHHHHhCCcchhhc
Confidence 6778999999999999999999987 2 89999999999983
|
|
| >TIGR00457 asnS asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-97 Score=770.57 Aligned_cols=425 Identities=54% Similarity=0.903 Sum_probs=380.4
Q ss_pred ecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc--cchhhhhcCCCCCCcEEEEEE
Q 012426 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIWIQG 90 (464)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~--~~~~~~~~~~l~~g~~V~V~G 90 (464)
+|+++... .....|++|+|+|||+++|.+|+++|++|||+++.+.||||++++. ..++.++. |+.||+|.|+|
T Consensus 3 ~~~~~~~~---~~~~~g~~v~v~Gwv~~~R~~~~~~F~~lrD~~~~g~iQ~v~~~~~~~~~~~~~~~--l~~gs~V~v~G 77 (453)
T TIGR00457 3 AIKDLLQQ---VYKFVGDEVTVSGWVRTKRSSKKIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKS--LTTGSSVSVTG 77 (453)
T ss_pred cHHHHHhc---chhcCCCEEEEEEEeEEEEcCCCeEEEEEECCCCCccEEEEEeCCcChHHHHHHHc--CCCCcEEEEEE
Confidence 45555542 1246799999999999999999999999999993336999998763 22445677 99999999999
Q ss_pred EEEeCCCCCceEEEEEeeEEEEecCC-CCCCCCccccchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhCCcEE
Q 012426 91 NVVPSQGSKQKVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIW 169 (464)
Q Consensus 91 ~v~~~~~~~~~~el~~~~i~vls~~~-~~~P~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~gF~E 169 (464)
++++++...+++||.+++++||++|. .++|++.+.++.++++++||||+|++..+++|++||.|++++|+||.++||+|
T Consensus 78 ~v~~~~~~~~~~El~~~~i~vl~~~~~~~~P~~~~~~~~~~~~~~r~l~lR~~~~~~~lr~Rs~i~~~~r~~~~~~gf~e 157 (453)
T TIGR00457 78 KVVESPGKGQPVELQVKKIEVVGEAEPDDYPLQKKEHSLEFLRDIAHLRLRTNTLGAVMRVRNALSQAIHRYFQENGFTW 157 (453)
T ss_pred EEEcCCCCCCCEEEEEeEEEEEecCCccCCCCCccccChhhHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence 99998766678999999999999997 35999988889999999999999999999999999999999999999999999
Q ss_pred EeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHHHHhhccCceEEE
Q 012426 170 ISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTF 249 (464)
Q Consensus 170 V~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~rVfeI 249 (464)
|+||+|++++|||++++|.+.+.+. ..+.+||++++||+||||||||++++|++|||+|
T Consensus 158 V~TP~l~~~~~eg~~~~F~v~~~~~---------------------~~~~~~~~~~~yL~~Spql~lq~l~~g~~rVf~i 216 (453)
T TIGR00457 158 VSPPILTSNDCEGAGELFRVSTDGI---------------------DFSQDFFGKEAYLTVSGQLYLETYALALSKVYTF 216 (453)
T ss_pred ecCCeEeecCCCCCCCceEeccccc---------------------ccchhccCCccccccCHHHHHHHHhhcccCceEe
Confidence 9999999999999999998743221 0123699999999999999999888999999999
Q ss_pred ccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhCCCCC
Q 012426 250 GPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFV 329 (464)
Q Consensus 250 ~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~ 329 (464)
|||||||+++|+||||||||||||++|+|++|+|+++|+|++++++.+.+++..++++++...+......+++.++.||+
T Consensus 217 ~~~FR~E~~~t~rHl~EFt~le~e~~~~~~~dvm~~~E~lv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 296 (453)
T TIGR00457 217 GPTFRAEKSNTSRHLSEFWMIEPEMAFANLNDLLQLAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINNKFA 296 (453)
T ss_pred eeccccCCCCCCcCcchhccceeeeecCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHhcCCCCc
Confidence 99999999998999999999999999999999999999999999999998888888777665555667778888899999
Q ss_pred CCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccCCCCCceeeEEEeeCCcc
Q 012426 330 QLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIG 409 (464)
Q Consensus 330 ~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~Gig 409 (464)
+|||+||+++|++.+..++.++.||.+|+.++|++|++.++. +|+||||||..++|||++.++++++++|||||++|+|
T Consensus 297 rit~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~L~~~~~~-~p~fIt~~P~~~~pfy~~~~~~~~~~~~fDL~~~g~g 375 (453)
T TIGR00457 297 RITYTDAIEILKESDKNFEYEDFWGDDLQTEHERFLAEEYFK-PPVFVTNYPKDIKAFYMKLNDDGKTVAAMDLLAPGIG 375 (453)
T ss_pred eeEHHHHHHHHHhcCCCCcCCCCCCCCCCcHHHHHHHHHhCC-CCEEEECCCcccChhhcccCCCcCceeeeeeccCCce
Confidence 999999999999987665556789999999999999988766 7999999999999999877788899999999999999
Q ss_pred ccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 410 ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 410 Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
||+|||+|+|+++++.++|+++|+|++.|+|||++++||+ | |+|+++|.+|||||
T Consensus 376 Ei~~gsere~~~~~l~~~~~~~g~d~~~~~~Yl~~~~~G~pPhgG~GiGieRlvm~l~g~~~Irdv 441 (453)
T TIGR00457 376 EIIGGSEREDDLDKLENRMKEMGLDTDALNWYLDLRKYGSVPHSGFGLGFERLLAYITGLENIRDA 441 (453)
T ss_pred EEeehhccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhh
Confidence 9999999999999999999999999999999999999998 3 99999999999997
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn. |
| >PRK03932 asnC asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-95 Score=759.66 Aligned_cols=423 Identities=59% Similarity=1.002 Sum_probs=381.4
Q ss_pred ceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc--cchhhhhcCCCCCCcEEEE
Q 012426 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIWI 88 (464)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~--~~~~~~~~~~l~~g~~V~V 88 (464)
+.+|+++... ...|++|+|+|||+++|.+|+++|++|||++|. +|+++..+. ..++.++. |+.||+|.|
T Consensus 3 ~~~~~~~~~~-----~~~~~~V~i~G~v~~~R~~g~~~Fi~lrD~~g~--iq~~~~~~~~~~~~~~~~~--l~~~s~v~v 73 (450)
T PRK03932 3 RVSIKDILKG-----KYVGQEVTVRGWVRTKRDSGKIAFLQLRDGSCF--KQLQVVKDNGEEYFEEIKK--LTTGSSVIV 73 (450)
T ss_pred cEEHHHhccc-----ccCCCEEEEEEEEEEEEeCCCeEEEEEECCCCc--EEEEEEcCCChHHHHHHhc--CCCCcEEEE
Confidence 4567887633 477999999999999999999999999999985 888886543 34566777 999999999
Q ss_pred EEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCccccchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhCCcE
Q 012426 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFI 168 (464)
Q Consensus 89 ~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~gF~ 168 (464)
+|++.+++++.+++||++++++||+++..++|++.++++.++++++||||+|++.++++|++||.|++++|+||.++||+
T Consensus 74 ~G~v~~~~~~~~~~el~~~~i~vl~~~~~~~p~~~~~~~~~~~~~~r~l~lR~~~~~~~l~~Rs~i~~~iR~f~~~~gf~ 153 (450)
T PRK03932 74 TGTVVESPRAGQGYELQATKIEVIGEDPEDYPIQKKRHSIEFLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNENGFV 153 (450)
T ss_pred EEEEEcCCCCCCCEEEEEEEEEEccCCCCCCCCCccccChHHHhhCceeeccCHHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 99999998877889999999999999876799999888999999999999999999999999999999999999999999
Q ss_pred EEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHHHHhhccCceEE
Q 012426 169 WISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYT 248 (464)
Q Consensus 169 EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~rVfe 248 (464)
||+||+|++++|||++++|.+.+... ..+.+||+.++||+||||||||++++|++|||+
T Consensus 154 EV~TP~L~~~~~eg~~~~F~v~~~~~---------------------~~~~~~~~~~~~L~~Spql~lq~l~~g~~rVf~ 212 (450)
T PRK03932 154 WVDTPIITASDCEGAGELFRVTTLDL---------------------DFSKDFFGKEAYLTVSGQLYAEAYAMALGKVYT 212 (450)
T ss_pred EecCCceeccCCCCCCCceEeecccc---------------------cccccccCCCcccccCHHHHHHHHHhccCCeEE
Confidence 99999999999999999998743210 012369999999999999999998899999999
Q ss_pred EccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhCCCC
Q 012426 249 FGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDF 328 (464)
Q Consensus 249 I~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~ 328 (464)
|+||||||+++|+||||||||||||++|+|++++|+++|+||+++++.+++++.+++++++++.+.+..+.++..++.||
T Consensus 213 i~~~FR~E~~~t~rHl~EFt~lE~e~~~~~~~~~m~~~e~li~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~ 292 (450)
T PRK03932 213 FGPTFRAENSNTRRHLAEFWMIEPEMAFADLEDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERLENFIESPF 292 (450)
T ss_pred eeeccccCCCCCccccccccccceEEeccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccccCchHHHHHHhhcCCCc
Confidence 99999999999999999999999999999999999999999999999999988888988888776666666665567899
Q ss_pred CCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccCCCCCceeeEEEeeCCc
Q 012426 329 VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRI 408 (464)
Q Consensus 329 ~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~Gi 408 (464)
++|||+||+++|++.+.+++.++.||.+++.++|++|.++++. .|+||||||.+++||||+.++++++++||||++||+
T Consensus 293 ~rity~eA~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~-~pvfI~~yP~~~~pfy~~~~~~~~~~~~fdLl~~g~ 371 (450)
T PRK03932 293 PRITYTEAIEILQKSGKKFEFPVEWGDDLGSEHERYLAEEHFK-KPVFVTNYPKDIKAFYMRLNPDGKTVAAMDLLAPGI 371 (450)
T ss_pred eEeEHHHHHHHHHHcCCCcCCCCCcccccChHHHHHHHHHhcC-CcEEEECCCcccCcccCcCCCCCCEEEEEEEEcCCC
Confidence 9999999999999988776656689999999999999985555 799999999999999977665559999999999999
Q ss_pred cccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 409 GELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 409 gEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
|||++|++|+++++++.++++++|++++.++||+++++||| | |+|+++|.+|||||
T Consensus 372 ~El~~g~~r~~~~~~l~~~~~~~g~~~~~~~~yl~~~~~G~pP~gG~GiGidRL~m~l~g~~nIrdv 438 (450)
T PRK03932 372 GEIIGGSQREERLDVLEARIKELGLNKEDYWWYLDLRRYGSVPHSGFGLGFERLVAYITGLDNIRDV 438 (450)
T ss_pred ceeCCHHHHhhhHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhh
Confidence 99999999999999999999999999999999999999988 3 99999999999986
|
|
| >TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-91 Score=728.15 Aligned_cols=396 Identities=28% Similarity=0.452 Sum_probs=352.2
Q ss_pred ecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc---cchhhhhcCCCCCCcEEEEE
Q 012426 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQ 89 (464)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V~V~ 89 (464)
+++++.. +..|+.|+|+|||+++|.+|+++|++|||++| .||||++++. ..++.++. |+.||+|.|+
T Consensus 2 ~~~~l~~------~~~g~~v~i~G~v~~~R~~g~~~Fi~lrd~~g--~iQ~v~~~~~~~~~~~~~~~~--l~~~s~v~v~ 71 (428)
T TIGR00458 2 YSADIKP------EMDGQEVTFMGWVHEIRDLGGLIFVLLRDREG--LIQITAPAKKVSKNLFKWAKK--LNLESVVAVR 71 (428)
T ss_pred chhhCch------hhCCCEEEEEEEEEEEecCCCcEEEEEEeCCe--eEEEEEECCcCCHHHHHHHhC--CCCCcEEEEE
Confidence 4555654 36789999999999999999999999999997 4999998653 23555677 9999999999
Q ss_pred EEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCcccc---chhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhCC
Q 012426 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRV---SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENG 166 (464)
Q Consensus 90 G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~~---~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~g 166 (464)
|+|++++...+++||.+++++|+|+|..++|++.+.. +.+.+.++||||+|++.++++|++||+|++++|+||.++|
T Consensus 72 G~v~~~~~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~~~r~~~R~ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~g 151 (428)
T TIGR00458 72 GIVKIKEKAPGGFEIIPTKIEVINEAKEPLPLDPTEKVPAELDTRLDYRFLDLRRPTVQAIFRIRSGVLESVREFLAEEG 151 (428)
T ss_pred EEEEecCCCCCcEEEEEeEEEEEecCCCCCCCCccccCCCCHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999887666789999999999999987789876543 5677789999999999999999999999999999999999
Q ss_pred cEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHH-HHhhccCc
Q 012426 167 FIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSN 245 (464)
Q Consensus 167 F~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lq-ll~~g~~r 245 (464)
|+||+||+|++++|||++++|.+ +||+.++||+|||||||| ++++|++|
T Consensus 152 f~EV~TP~L~~~~~eg~~~~f~v------------------------------~~~~~~~yL~~Spql~~q~li~~g~~r 201 (428)
T TIGR00458 152 FIEVHTPKLVASATEGGTELFPI------------------------------TYFEREAFLGQSPQLYKQQLMAAGFER 201 (428)
T ss_pred CEEEeCCceecCCCCCCcceeee------------------------------EecCCcEEECcCHHHHHHHHHhcccCc
Confidence 99999999999999999999976 478999999999999998 56899999
Q ss_pred eEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhC
Q 012426 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE 325 (464)
Q Consensus 246 VfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~ 325 (464)
||+||||||||+++|+||||||||||||++|+|++|+|+++|+||+++++.+.+++..++...+.. + ....
T Consensus 202 Vf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~~~~~~~~--------~-~~~~ 272 (428)
T TIGR00458 202 VYEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDHHDVMDILEELVVRVFEDVPERCAHQLETLEFK--------L-EKPE 272 (428)
T ss_pred EEEEecccccCCCCCccchheeeEeeeeeccCCHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccc--------c-ccCC
Confidence 999999999999998999999999999999999999999999999999999998887666543321 0 0124
Q ss_pred CCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccc-cCCCCCceeeEEEe
Q 012426 326 RDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMR-QNDDGRTVAAMDML 404 (464)
Q Consensus 326 ~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~-~~~d~~~~~~fdl~ 404 (464)
.||++|||.||++++++.|.+ ..||.+++.++|++|.+.+ . .|+||+|||.+++|||++ .++++++++|||||
T Consensus 273 ~pf~rity~eA~~~l~~~g~~----~~~~~~l~~~~E~~l~~~~-~-~p~fi~d~P~~~~pfy~~~~~~~p~~~~~fdl~ 346 (428)
T TIGR00458 273 GKFVRLTYDEAIEMANAKGVE----IGWGEDLSTEAEKALGEEM-D-GLYFITDWPTEIRPFYTMPDEDNPEISKSFDLM 346 (428)
T ss_pred CCceEEEHHHHHHHHHHcCCC----CCCccccchHHHHHHHHHh-C-CCEEEEeCchhcCcccccccCCCCCEEEEEEEE
Confidence 589999999999999988764 4688899999999998765 4 799999999999999965 45677999999999
Q ss_pred eCCccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 405 VPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 405 ~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
++|+ ||+|||+|+||+++|++|++++|++++.++|||+|++||+ | |+|+++|.+|||||
T Consensus 347 ~~g~-Ei~~g~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRL~m~l~g~~~Irdv 416 (428)
T TIGR00458 347 YRDL-EISSGAQRIHLHDLLVERIKAKGLNPEGFKDYLEAFSYGMPPHAGWGLGAERFVMFLLGLKNIREA 416 (428)
T ss_pred eCCe-EEeeCchhcCCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCcCceeecHHHHHHHHcCCCchheE
Confidence 9995 9999999999999999999999999999999999999988 3 99999999999986
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). |
| >PRK05159 aspC aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-91 Score=726.94 Aligned_cols=401 Identities=30% Similarity=0.512 Sum_probs=356.6
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc--cchhhhhcCCCCCCcEEE
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIW 87 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~--~~~~~~~~~~l~~g~~V~ 87 (464)
++++|+++... ..|++|+|+|||+++|.+|+++|++|||++|. ||+|++++. ..++.++. |++||+|.
T Consensus 3 ~~~~~~~l~~~------~~g~~V~i~GrV~~~R~~gk~~Fl~LrD~~g~--iQ~v~~~~~~~~~~~~~~~--L~~gs~V~ 72 (437)
T PRK05159 3 KRHLTSELTPE------LDGEEVTLAGWVHEIRDLGGIAFLILRDRSGI--IQVVVKKKVDEELFETIKK--LKRESVVS 72 (437)
T ss_pred ceeEhhhCChh------hCCCEEEEEEEeEeeecCCCeEEEEEEcCCcE--EEEEEeCCccHHHHHHHhC--CCCCcEEE
Confidence 68999999874 67999999999999999999999999999974 999998763 23455677 99999999
Q ss_pred EEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCcc---ccchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhh
Q 012426 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKK---RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 164 (464)
Q Consensus 88 V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~---~~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~ 164 (464)
|+|+|.+++...+++||++++++|+|+|..++|+..+ ..+.++++++||||+|++.++++|++||.|++++|+||.+
T Consensus 73 v~G~v~~~~~~~~~~el~~~~i~vls~a~~~~P~~~~~~~~~~~~~~~~~r~Ldlr~~~~~~~l~~Rs~i~~~iR~ff~~ 152 (437)
T PRK05159 73 VTGTVKANPKAPGGVEVIPEEIEVLNKAEEPLPLDISGKVLAELDTRLDNRFLDLRRPRVRAIFKIRSEVLRAFREFLYE 152 (437)
T ss_pred EEEEEEcCCCCCCCEEEEEeEEEEEeCCCCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987677899999999999999867887643 2357888899999999999999999999999999999999
Q ss_pred CCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHHHH-hhcc
Q 012426 165 NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETY-ATAL 243 (464)
Q Consensus 165 ~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll-~~g~ 243 (464)
+||+||+||+|+++++||+++.|.+ +||++++||+||||||||++ ++|+
T Consensus 153 ~gf~EV~TP~L~~~~~eg~~~~f~~------------------------------~~~~~~~~L~~Spql~~q~l~~~g~ 202 (437)
T PRK05159 153 NGFTEIFTPKIVASGTEGGAELFPI------------------------------DYFEKEAYLAQSPQLYKQMMVGAGF 202 (437)
T ss_pred CCCEEEeCCcccccCCCCCcceEeE------------------------------EecCCceEecCCHHHHHHHHHhcCC
Confidence 9999999999999999999999975 58899999999999999864 5779
Q ss_pred CceEEEccccccCCCCCccccccchhccceeccCC-HHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhh
Q 012426 244 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLST 322 (464)
Q Consensus 244 ~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~-~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 322 (464)
+|||+||||||||+++|+||||||||||||++|+| ++++|+++|+||+.+++.+.+++.+++.+.+.. + .
T Consensus 203 ~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv~~i~~~~~~~~~~~i~~~~~~--------~-~ 273 (437)
T PRK05159 203 ERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFIDDHEDVMDLLENLLRYMYEDVAENCEKELELLGIE--------L-P 273 (437)
T ss_pred CcEEEEeceeeCCCCCCcccchhhheeeeeeeecccHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhccC--------C-C
Confidence 99999999999999998899999999999999998 999999999999999999998887776655431 1 0
Q ss_pred hhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcc---cCCCeeeeeCCCCCcccccccC-CCCCce
Q 012426 323 VAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAF---GGCPVIVSDYPKEIKAFYMRQN-DDGRTV 398 (464)
Q Consensus 323 ~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~---~~~p~fI~~yP~~~~pfy~~~~-~d~~~~ 398 (464)
..+.||++|||.||++++++.|.+ ..||++++.++|++|++.+. ..+|+||+|||.+++|||++.+ ++++++
T Consensus 274 ~~~~~f~rit~~eA~~~l~~~~~~----~~~~~~~~~~~e~~l~~~~~~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~ 349 (437)
T PRK05159 274 VPETPIPRITYDEAIEILKSKGNE----ISWGDDLDTEGERLLGEYVKEEYGSDFYFITDYPSEKRPFYTMPDEDDPEIS 349 (437)
T ss_pred cCCCCceEeEHHHHHHHHHHcCCC----CCCCCCCCcHHHHHHHHHHhhhcCCceEEEecCchhcCcceeeecCCCCCEE
Confidence 234689999999999999988754 46888899999998865331 2149999999999999998654 567899
Q ss_pred eeEEEeeCCccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 399 AAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 399 ~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
+|||||++|+ ||+|||+|++|+++|++|++++|++++.++|||+|++||+ | |+|+++|.+|||||
T Consensus 350 ~~fdl~~~g~-Ei~~g~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~giGidRl~m~~~g~~~Irdv 425 (437)
T PRK05159 350 KSFDLLFRGL-EITSGGQRIHRYDMLVESIKEKGLNPESFEFYLEAFKYGMPPHGGFGLGLERLTMKLLGLENIREA 425 (437)
T ss_pred EEEEEEECCE-EEeeCeEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCCeeeEhHHHHHHHHcCCCchhEE
Confidence 9999999996 9999999999999999999999999999999999999988 3 99999999999986
|
|
| >PTZ00401 aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-89 Score=721.54 Aligned_cols=408 Identities=23% Similarity=0.376 Sum_probs=347.7
Q ss_pred ceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc----chhhhhcCCCCCCcEE
Q 012426 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE----GYDQVKSGLITTGASI 86 (464)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~----~~~~~~~~~l~~g~~V 86 (464)
++.|++|... ...|++|+|+|||+++|.+|+++|++|||++| +||+|++.+.. -++.++. |+.||+|
T Consensus 65 ~~~i~~l~~~-----~~~g~~V~v~Grv~~~R~~Gk~~Fl~LRd~~~--~iQ~v~~~~~~~~~~~~~~~~~--l~~esiV 135 (550)
T PTZ00401 65 FIPVAVLSKP-----ELVDKTVLIRARVSTTRKKGKMAFMVLRDGSD--SVQAMAAVEGDVPKEMIDFIGQ--IPTESIV 135 (550)
T ss_pred eEEHHHCCcc-----ccCCCEEEEEEEEEEEecCCCeEEEEEEeCCc--CEEEEEECCCccCHHHHHHHhc--CCCCCEE
Confidence 4778888753 23799999999999999999999999999997 59999975421 1333566 9999999
Q ss_pred EEEEEEEeCC-----CCCceEEEEEeeEEEEecCCCCCCCCcccc-----------chhhhhhcceecCCCccchhhhhH
Q 012426 87 WIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPSYPIQKKRV-----------SREFLRTKAHLRPRTNTFGAVARV 150 (464)
Q Consensus 87 ~V~G~v~~~~-----~~~~~~el~~~~i~vls~~~~~~P~~~~~~-----------~~~~~r~~r~l~~R~~~~~~~~~~ 150 (464)
.|+|+|++.+ ...+++||++++++|||+|..++|++.++. +.+++.++||||+|++.++++|++
T Consensus 136 ~V~G~v~~~~~~~~~~~~~~~El~v~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~dtrl~~R~LdlR~~~~~~i~r~ 215 (550)
T PTZ00401 136 DVEATVCKVEQPITSTSHSDIELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVNFDTRLNSRWMDLRTPASGAIFRL 215 (550)
T ss_pred EEEEEEEecCccCCCCCCccEEEEeeEEEEEeCCCCCCCCCcccccccccccccccChhhhhhhhhhhhcCHHHHHHHHH
Confidence 9999999742 345679999999999999987789876432 456777999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccccccc
Q 012426 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTV 230 (464)
Q Consensus 151 rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~ 230 (464)
||+|++++|+||.++||+||+||+|+++++||++++|.+ +||++++||+|
T Consensus 216 rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~egga~~F~v------------------------------~yf~~~~~L~q 265 (550)
T PTZ00401 216 QSRVCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVFKL------------------------------EYFNRFAYLAQ 265 (550)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCccccCCCCcccccccc------------------------------ccCCCCeecCC
Confidence 999999999999999999999999999999999999976 58999999999
Q ss_pred chhHHHHHHh-hccCceEEEccccccCCCCCccccccchhccceeccC-CHHHHHHHHHHHHHHHHHHHhhcCccccccc
Q 012426 231 SGQLNAETYA-TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFF 308 (464)
Q Consensus 231 Spql~lqll~-~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~ 308 (464)
|||||||+++ +|++|||+||||||||+++|+|||||||||||||+|. +|+++|+++|+|+++++..+.+. ..++...
T Consensus 266 Spql~kq~li~~g~~rVfeI~p~FRaE~s~T~RHl~EFt~Le~E~~~~~~y~evm~~~e~l~~~i~~~l~~~-~~ei~~~ 344 (550)
T PTZ00401 266 SPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHRHLTEFVGLDVEMRINEHYYEVLDLAESLFNYIFERLATH-TKELKAV 344 (550)
T ss_pred CHHHHHHHHHhcCCCCEEEEeCeEeCCCCCCCCCccchhhhhhhhHhcCCHHHHHHHHHHHHHHHHHHHHcc-chhhhhh
Confidence 9999999765 6899999999999999999999999999999999986 69999999999999999988765 3333332
Q ss_pred ccccc----------------------------cchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHH
Q 012426 309 NTWIE----------------------------KGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 360 (464)
Q Consensus 309 ~~~~~----------------------------~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~ 360 (464)
....+ ..+.+.+.. .+.+|+||+|.||+++|++.+. .+..|++|++.+
T Consensus 345 ~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~~rl~y~eai~lL~~~~~---~~~~~~~dl~~~ 420 (550)
T PTZ00401 345 CQQYPFEPLVWKLTPERMKELGVGVISEGVEPTDKYQARVHN-MDSRMLRINYMHCIELLNTVLE---EKMAPTDDINTT 420 (550)
T ss_pred ccccccccccccccHHHHHhcCCCcccccccchHHHHHHHHh-cCCCcccccHHHHHHHHHHhcc---cCCCcccccCch
Confidence 21100 011222222 4667999999999999999752 234678899999
Q ss_pred HHHHhh---hhcccCCCeeeee-CCCCCccccc-ccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHcCCCc
Q 012426 361 HERYLT---EEAFGGCPVIVSD-YPKEIKAFYM-RQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNR 435 (464)
Q Consensus 361 ~e~~l~---e~~~~~~p~fI~~-yP~~~~pfy~-~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~ 435 (464)
+|++|+ ++.++ .|+||+| ||.+++|||+ +.++|+++++|||||++| +||+|||+|+|||++|++||+++|+|+
T Consensus 421 ~E~~L~~~v~~~~~-~~~fI~d~yP~~~rpFY~~~~~~dp~~s~~fDlf~~G-~EI~sG~qR~~d~~~l~~r~~~~G~d~ 498 (550)
T PTZ00401 421 NEKLLGKLVKERYG-TDFFISDRFPSSARPFYTMECKDDERFTNSYDMFIRG-EEISSGAQRIHDPDLLLARAKMLNVDL 498 (550)
T ss_pred HHHHHHHHHHHhcC-CCEEEECCCChhhCchhcCcCCCCCCEEEEEEEEeCC-EEEccchhhcCCHHHHHHHHHHcCCCc
Confidence 999885 44454 7999998 9999999995 445678999999999999 599999999999999999999999999
Q ss_pred cchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 436 DSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 436 ~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
..++|||++++||+ | |+|+++|.+|||||
T Consensus 499 ~~~~~Yl~a~~~G~PPhgG~GiGlERLvM~~lg~~nIR~v 538 (550)
T PTZ00401 499 TPIKEYVDSFRLGAWPHGGFGVGLERVVMLYLGLSNVRLA 538 (550)
T ss_pred hhhHHHHHHHHcCCCCCceEEEhHHHHHHHHhCCCcHhee
Confidence 99999999999988 3 99999999999986
|
|
| >PLN02850 aspartate-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-89 Score=720.41 Aligned_cols=405 Identities=25% Similarity=0.419 Sum_probs=348.4
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc----c-hhhhhcCCCCCCc
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE----G-YDQVKSGLITTGA 84 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~----~-~~~~~~~~l~~g~ 84 (464)
+++.|++|.. ...|++|+|+|||+++|.+|+++|++|||+++ +||+|+..+.. . ++.+.. |+.||
T Consensus 68 ~~~~i~~l~~------~~~g~~V~v~Grv~~~R~~gk~~Fl~Lrd~~~--~iQ~v~~~~~~~~~~~~~~~~~~--l~~es 137 (530)
T PLN02850 68 EWTDVSDLGE------ELAGSEVLIRGRVHTIRGKGKSAFLVLRQSGF--TVQCVVFVSEVTVSKGMVKYAKQ--LSRES 137 (530)
T ss_pred eEeEhhhcch------hhCCCEEEEEEEEEEEccCCCeEEEEEEeCCc--CEEEEEECCccccCHHHHHHHhC--CCCCC
Confidence 3467777765 37899999999999999999999999999986 59999986532 1 233566 99999
Q ss_pred EEEEEEEEEeCC----CCCceEEEEEeeEEEEecCCCCCCCCccc--------------------cchhhhhhcceecCC
Q 012426 85 SIWIQGNVVPSQ----GSKQKVELKVNKIVLVGKSDPSYPIQKKR--------------------VSREFLRTKAHLRPR 140 (464)
Q Consensus 85 ~V~V~G~v~~~~----~~~~~~el~~~~i~vls~~~~~~P~~~~~--------------------~~~~~~r~~r~l~~R 140 (464)
+|.|+|+|++.+ +..+++||++++|+|+|+|.+++|++.++ .+.++++++||||+|
T Consensus 138 ~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~R~LdlR 217 (530)
T PLN02850 138 VVDVEGVVSVPKKPVKGTTQQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLR 217 (530)
T ss_pred EEEEEEEEEccCcCCCCCCccEEEEEeEEEEEeCCCCCCCCChhhcccccccccccccccccccccChhhhhcchhhhhc
Confidence 999999998532 22357999999999999998779987653 235667799999999
Q ss_pred CccchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccc
Q 012426 141 TNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (464)
Q Consensus 141 ~~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (464)
++.++++||+||.|++++|+||.++||+||+||+|+++++||++++|.+ +
T Consensus 218 ~~~~qaifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v------------------------------~ 267 (530)
T PLN02850 218 TPANQAIFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRL------------------------------D 267 (530)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCCccccceeee------------------------------c
Confidence 9999999999999999999999999999999999999999999999976 5
Q ss_pred ccCcccccccchhHHHHH-HhhccCceEEEccccccCCCCCccccccchhccceeccC-CHHHHHHHHHHHHHHHHHHHh
Q 012426 221 FFEKPAFLTVSGQLNAET-YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYIL 298 (464)
Q Consensus 221 ~f~~~~yL~~Spql~lql-l~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-~~~dlm~~~e~li~~i~~~~~ 298 (464)
||++++||+||||||||+ +++|++|||+||||||||+++|+|||+|||||||||+|. +|+++|+++|+|+++++..+.
T Consensus 268 yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE~s~t~RHl~EFt~Le~Em~~~~~y~evm~~~E~ll~~i~~~l~ 347 (530)
T PLN02850 268 YKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLN 347 (530)
T ss_pred cCCcceecCCCHHHHHHHHHHhcCCceEEEecccccCCCCCCccchhhccchhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999986 568999999999999999999999999999999999998 599999999999999999999
Q ss_pred hcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhh---hcccCCCe
Q 012426 299 DNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPV 375 (464)
Q Consensus 299 ~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e---~~~~~~p~ 375 (464)
+.+..++..+....+.. .+ +.++ +++++||+||+++|++.|.++ .++.|++.++|+.|++ ..+...++
T Consensus 348 ~~~~~el~~i~~~~~~~---~~-~~~~-~~~rit~~ea~~~L~~~g~~~----~~~~dl~~~~E~~Lg~~v~~~~~~~~~ 418 (530)
T PLN02850 348 ERCKKELEAIREQYPFE---PL-KYLP-KTLRLTFAEGIQMLKEAGVEV----DPLGDLNTESERKLGQLVKEKYGTDFY 418 (530)
T ss_pred hhhhhhHHhhcccCCcc---hh-hhcC-CcccCCHHHHHHHHHHcCCCC----CCCCCcchHHHHHHHHHHHHhcCCCeE
Confidence 88877776554322211 11 1222 678999999999999988643 3567899999998864 22332567
Q ss_pred eeeeCCCCCccccccc-CCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh-----
Q 012426 376 IVSDYPKEIKAFYMRQ-NDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS----- 449 (464)
Q Consensus 376 fI~~yP~~~~pfy~~~-~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~----- 449 (464)
||+|||..++|||++. ++|+++++|||||++| +||+|||+|+||+++|++||+++|++++.++|||++++||+
T Consensus 419 ii~~yP~~~~pfY~~~~~~d~~~~~~fDl~i~G-~EI~~G~qr~~d~~~l~~r~~~~g~d~~~~~~Yl~a~~~G~pPhgG 497 (530)
T PLN02850 419 ILHRYPLAVRPFYTMPCPDDPKYSNSFDVFIRG-EEIISGAQRVHDPELLEKRAEECGIDVKTISTYIDSFRYGAPPHGG 497 (530)
T ss_pred EEECCccccCchhccccCCCCCeEEEEEEEeCC-EEEeccceecCCHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCCce
Confidence 8899999999999654 4678999999999999 59999999999999999999999999999999999999998
Q ss_pred ---h---HhhhhcCCCCCCCC
Q 012426 450 ---G---LVFILIKVTNFLNC 464 (464)
Q Consensus 450 ---g---L~mll~~~~~I~~~ 464 (464)
| |||+++|.+|||||
T Consensus 498 ~GiGlERLvM~l~g~~nIr~v 518 (530)
T PLN02850 498 FGVGLERVVMLFCGLNNIRKT 518 (530)
T ss_pred EEEcHHHHHHHHcCCCchheE
Confidence 3 99999999999986
|
|
| >TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-88 Score=708.48 Aligned_cols=420 Identities=19% Similarity=0.300 Sum_probs=350.2
Q ss_pred cccccceecccccCCCCCC--C--CCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc---chhhhhcC
Q 012426 6 GEFRKKLKIVDVKGGPNEG--L--DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVKSG 78 (464)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~~--~--~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~---~~~~~~~~ 78 (464)
++|.++++++++.+.|++. + ...++.|+|+|||+++|.+||++|++|+|++| .||+|++++.. .++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~gk~~F~~l~D~~g--~iQ~~~~~~~~~~~~~~~~~~- 102 (496)
T TIGR00499 26 NKFERTHSSQEFQEEYADLSNEELEDKNIEVSIAGRIMARRSMGKATFITLQDESG--QIQLYVNKDDLPEDFYEFDEY- 102 (496)
T ss_pred CCCCCCcCHHHHHHHhhccCccchhcCCCEEEEEEEEEEEecCCCeEEEEEEcCCc--cEEEEEECCcCcHHHHHHHHh-
Confidence 5788999999998877541 1 24488999999999999999999999999997 49999987642 1333332
Q ss_pred CCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCccccc---hhhhhhcceecCCC-ccchhhhhHHHHH
Q 012426 79 LITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPRT-NTFGAVARVRNAL 154 (464)
Q Consensus 79 ~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~~~---~~~~r~~r~l~~R~-~~~~~~~~~rs~i 154 (464)
.|+.||+|.|+|++.++++++ +||++++|++||+|. .|+|.+.++ .+.+.++||||+|+ +.++++|++||+|
T Consensus 103 ~l~~gd~V~v~G~~~~t~~ge--lel~~~~i~ilsk~~--~plP~k~~~~~d~e~r~r~R~Ldl~~n~~~~~~~r~Rs~i 178 (496)
T TIGR00499 103 LLDLGDIIGVTGYPFKTKTGE--LSVHVTELQILTKAL--RPLPDKFHGLTDQETRYRQRYLDLIVNPDSRQTFLVRSKI 178 (496)
T ss_pred cCCCCCEEEEEEEEEECCCCc--EEEEeeEEEEEecCC--CCCCccccccCChhhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 289999999999999998754 999999999999997 555555543 46667899999995 6999999999999
Q ss_pred HHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhH
Q 012426 155 AYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL 234 (464)
Q Consensus 155 ~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql 234 (464)
++++|+||.++||+||+||+|+++++++++++|.+ ++ ++|+.++||++||||
T Consensus 179 ~~~iR~fl~~~gF~EVeTP~L~~~~gga~a~pF~t-~~---------------------------~~~~~~~yLriSpEL 230 (496)
T TIGR00499 179 IKAIRRFLDDRGFIEVETPMLQVIPGGANARPFIT-HH---------------------------NALDMDLYLRIAPEL 230 (496)
T ss_pred HHHHHHHHHHCcCEEEeCCeeecCCCCccceeEEe-ec---------------------------ccCCCceEEecCHHH
Confidence 99999999999999999999999888777899953 33 357899999999999
Q ss_pred HHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcc-----ccccc
Q 012426 235 NAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE-----DMDFF 308 (464)
Q Consensus 235 ~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~-----~i~~~ 308 (464)
||| ++++|++||||||||||||+++ .||||||||||||++|+||+|+|+++|+||+.+++.+.+++.. ++++.
T Consensus 231 ylKrlivgG~~rVfeIg~~FRnE~~~-~rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~~~l~~~~~~~~~~~~~~~~ 309 (496)
T TIGR00499 231 YLKRLIVGGFEKVYEIGRNFRNEGVD-TTHNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQELLGTTKITYGELEIDFK 309 (496)
T ss_pred HHHHHHhCCCCceEEEecceecCCCC-CcccchhheeehhhhcCCHHHHHHHHHHHHHHHHHHHhcccceecCceeccCC
Confidence 995 6789999999999999999997 6999999999999999999999999999999999999876543 23444
Q ss_pred ccccccchHHHHh---hhhCCCCCCC-CHHHHHHHHHhcCCCc-ccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCC
Q 012426 309 NTWIEKGIIDRLS---TVAERDFVQL-SYTDAIELLIKAKKKF-EFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKE 383 (464)
Q Consensus 309 ~~~~~~~~~~~l~---~~~~~~~~~i-t~~ea~~~l~~~~~~~-~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~ 383 (464)
.+|.+.++.++++ +..|.++... +.+++.+++++.|+++ ..+..||..+...+++++. +.+. +|+||+|||.+
T Consensus 310 ~pf~rit~~eai~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ve-~~l~-~P~fv~dyP~~ 387 (496)
T TIGR00499 310 KPFKRITMVEAIKKYDMETGIDFDDLKDFETAKALAKKIGIEVAEKSLTLGHILNELFEQFLE-HTLI-QPTFITHYPAE 387 (496)
T ss_pred CCceEEEHHHHHHHHHHhcCCCchhcCCHHHHHHHHHHcCCCcCCCCCCHHHHHHHHHHHHHH-hccC-CCEEEECCchh
Confidence 5666666666666 5555555332 4455555566666655 3345678888889998865 4455 79999999999
Q ss_pred CcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHH------HcCCCccch--HHHHHHhhhhh------
Q 012426 384 IKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD------ELKLNRDSY--WWYLDLRHYGS------ 449 (464)
Q Consensus 384 ~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~------~~g~~~~~~--~~yl~~~~~G~------ 449 (464)
++|||+.+++++++++|||||++|+ ||||||+|+|||++|++||+ +.|.+++.+ +|||+|++|||
T Consensus 388 ~splak~~~~~p~~~~rFeL~i~G~-Ei~ng~~El~dp~~q~~rf~~q~~~k~~g~~~~~~~de~yl~a~~~G~PP~gG~ 466 (496)
T TIGR00499 388 ISPLAKRNPSNPEFTDRFELFIAGK-EIANAFSELNDPLDQRERFEQQVAEKEAGDDEAQFVDEDFVEALEYGMPPTGGL 466 (496)
T ss_pred cCcccccCCCCCCeEEEEEEEeCCe-EEeccccccCCHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHcCCCCCceE
Confidence 9999988778889999999999997 99999999999999999975 467777665 89999999998
Q ss_pred --h---HhhhhcCCCCCCCC
Q 012426 450 --G---LVFILIKVTNFLNC 464 (464)
Q Consensus 450 --g---L~mll~~~~~I~~~ 464 (464)
| |+|++||.+||||+
T Consensus 467 GiGiDRLvMlltg~~~Irdv 486 (496)
T TIGR00499 467 GIGIDRLVMLLTDSKSIRDV 486 (496)
T ss_pred EEhHHHHHHHHhCCCcHhee
Confidence 3 99999999999986
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms. |
| >PLN02502 lysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-87 Score=709.42 Aligned_cols=419 Identities=18% Similarity=0.240 Sum_probs=363.0
Q ss_pred cccccceecccccCCCCC---CCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc-----chhhh-h
Q 012426 6 GEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-----GYDQV-K 76 (464)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~-----~~~~~-~ 76 (464)
++|.++++++++.+.|.+ ++...|++|+|+|||+++|.+||++|++|+|++| .||||++++.. .|+.+ +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~Gk~~F~~LrD~~g--~iQv~~~~~~~~~~~~~~~~~~~ 159 (553)
T PLN02502 82 YKFDVTHTAPELQEKYGSLENGEELEDVSVSVAGRIMAKRAFGKLAFYDLRDDGG--KIQLYADKKRLDLDEEEFEKLHS 159 (553)
T ss_pred CCCCCCccHHHHHHHhhccccccccCCCEEEEEEEEEEEecCCCeEEEEEecCCc--cEEEEEECccccchhHHHHHHHh
Confidence 678999999999887753 3456789999999999999999999999999997 49999986532 25555 3
Q ss_pred cCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCccccc---hhhhhhcceecCC-CccchhhhhHHH
Q 012426 77 SGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRN 152 (464)
Q Consensus 77 ~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~~~---~~~~r~~r~l~~R-~~~~~~~~~~rs 152 (464)
. |++||+|.|+|++.++++++ +||.+++|+|||+|. +|+|.+.++ .+.+.++||||+| ++.++++|++||
T Consensus 160 ~--l~~gdiV~V~G~~~~t~~ge--lel~~~~i~vLs~~l--~plP~k~~~~~d~e~r~r~RyLdl~~n~~~~~i~r~Rs 233 (553)
T PLN02502 160 L--VDRGDIVGVTGTPGKTKKGE--LSIFPTSFEVLTKCL--LMLPDKYHGLTDQETRYRQRYLDLIANPEVRDIFRTRA 233 (553)
T ss_pred C--CCCCcEEEEEEEEEecCCCC--EEEEEeEEEEEeccC--CCCCcccccccchhhhccchhhhhhcCHHHHHHHHHHH
Confidence 5 99999999999999998764 999999999999998 566655443 5666689999995 789999999999
Q ss_pred HHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccch
Q 012426 153 ALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSG 232 (464)
Q Consensus 153 ~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Sp 232 (464)
+|++++|+||.++||+||+||+|+++++++++.+|. |++ ++|+.++||++||
T Consensus 234 ~i~~~iR~fl~~~gF~EVeTPiL~~~~gGA~a~pF~-t~~---------------------------n~~~~~~yL~~Sp 285 (553)
T PLN02502 234 KIISYIRRFLDDRGFLEVETPMLNMIAGGAAARPFV-THH---------------------------NDLNMDLYLRIAT 285 (553)
T ss_pred HHHHHHHHHHHHCCCEEEECCeeeccCCCcccccee-eec---------------------------ccCCcceeeecCH
Confidence 999999999999999999999999988777788994 443 4789999999999
Q ss_pred hHHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCc-----cccc
Q 012426 233 QLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK-----EDMD 306 (464)
Q Consensus 233 ql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~-----~~i~ 306 (464)
||||| ++++|++|||+||||||||+++ .||||||||||||++|+||+|+|+++|+||+.+++.+.+.+. .+++
T Consensus 286 el~lK~L~v~g~~rVfeIg~~FRnE~~~-~rH~pEFtmlE~y~a~~d~~dlm~~~E~li~~i~~~v~~~~~~~~~~~~i~ 364 (553)
T PLN02502 286 ELHLKRLVVGGFERVYEIGRQFRNEGIS-TRHNPEFTTCEFYQAYADYNDMMELTEEMVSGMVKELTGSYKIKYHGIEID 364 (553)
T ss_pred HHHHHHHHHhccCCEEEEcCeeeCCCCC-CccccceeehhhhhhcCCHHHHHHHHHHHHHHHHHHHhcccccccCCcccc
Confidence 99996 6889999999999999999997 599999999999999999999999999999999999987653 3577
Q ss_pred ccccccccchHHHHhhhhCCCCCC-CCHHHHHHHHH----hcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCC
Q 012426 307 FFNTWIEKGIIDRLSTVAERDFVQ-LSYTDAIELLI----KAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYP 381 (464)
Q Consensus 307 ~~~~~~~~~~~~~l~~~~~~~~~~-it~~ea~~~l~----~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP 381 (464)
+..+|.+.++.++++++.|.+|+. ++++++.+.|+ +.++++..+..||..+..++++++.+. +. +|+||+|||
T Consensus 365 ~~~p~~rit~~e~l~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ve~~-l~-~PtFV~dyP 442 (553)
T PLN02502 365 FTPPFRRISMISLVEEATGIDFPADLKSDEANAYLIAACEKFDVKCPPPQTTGRLLNELFEEFLEET-LV-QPTFVLDHP 442 (553)
T ss_pred CCCCceeccHHHHHHHHhCCCCCcCCCHHHHHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHHHHhh-cC-CCEEEECCc
Confidence 778899999999999999999887 89999876444 446665556789999999999996654 45 799999999
Q ss_pred CCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHc----CC--Cc-c-chHHHHHHhhhhh----
Q 012426 382 KEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL----KL--NR-D-SYWWYLDLRHYGS---- 449 (464)
Q Consensus 382 ~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~----g~--~~-~-~~~~yl~~~~~G~---- 449 (464)
..++|||+.+++|+++++|||||++|+ ||||||+|++||.+|++||.++ +. +. . ..++||+|++|||
T Consensus 443 ~~~splak~~~~~p~~~erFELfi~G~-Eiangy~ELnDp~~Qr~rf~~q~~~~~~~~~~~~~~De~fl~aleyGmPP~g 521 (553)
T PLN02502 443 VEMSPLAKPHRSKPGLTERFELFINGR-ELANAFSELTDPVDQRERFEEQVKQHNAGDDEAMALDEDFCTALEYGLPPTG 521 (553)
T ss_pred cccCcccccCCCCCCeEEEEEEEeCCe-EEccchhhccCHHHHHHHHHHHHHHhhcCCccccccHHHHHHHHHcCCCCCc
Confidence 999999998888999999999999997 9999999999999999888642 22 21 1 2377999999998
Q ss_pred ----h---HhhhhcCCCCCCCC
Q 012426 450 ----G---LVFILIKVTNFLNC 464 (464)
Q Consensus 450 ----g---L~mll~~~~~I~~~ 464 (464)
| |||++||..||||+
T Consensus 522 G~GiGiDRLvMlltg~~sIrdV 543 (553)
T PLN02502 522 GWGLGIDRLVMLLTDSASIRDV 543 (553)
T ss_pred eEEehHHHHHHHHcCCcchhee
Confidence 3 99999999999985
|
|
| >PRK12445 lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-86 Score=699.92 Aligned_cols=419 Identities=17% Similarity=0.266 Sum_probs=347.1
Q ss_pred cccccceecccccCCCCC--CC--CCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc---cchh-hhhc
Q 012426 6 GEFRKKLKIVDVKGGPNE--GL--DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYD-QVKS 77 (464)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~--~~--~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~---~~~~-~~~~ 77 (464)
++|.++++++++.+.|++ .+ ...+++|+|+|||+++|.+||++|++|+|++| +||||++++. ..|+ .++.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~Gk~~F~~lrD~~g--~iQ~~~~~~~~~~~~~~~~~~~ 115 (505)
T PRK12445 38 NDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGG--RIQLYVARDSLPEGVYNDQFKK 115 (505)
T ss_pred CCCcCccCHHHHHHHhhccCcchhhcCCCEEEEEEEEEEEecCCCcEEEEEEeCCc--cEEEEEECCccchhhHHHHHhc
Confidence 678999999999887753 11 23478899999999999999999999999997 5999998653 2344 3567
Q ss_pred CCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCcccc---chhhhhhcceecCC-CccchhhhhHHHH
Q 012426 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRV---SREFLRTKAHLRPR-TNTFGAVARVRNA 153 (464)
Q Consensus 78 ~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~~---~~~~~r~~r~l~~R-~~~~~~~~~~rs~ 153 (464)
|+.||+|+|+|++.++++++ +||.++++++||+|. .|+|.+.+ +.+.+.++||||+| ++..+++|++||+
T Consensus 116 --l~~Gd~V~v~G~~~~t~~ge--lel~~~~~~llsk~~--~plP~~~~~~~d~e~r~r~Ryldl~~n~~~r~~~r~Rs~ 189 (505)
T PRK12445 116 --WDLGDIIGARGTLFKTQTGE--LSIHCTELRLLTKAL--RPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSK 189 (505)
T ss_pred --CCCCCEEEEEEEEEecCCCc--EEEEEeEEEEEecCC--CCCCcccccccChhhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 99999999999999998754 999999999999997 55555443 44666799999999 5789999999999
Q ss_pred HHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchh
Q 012426 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQ 233 (464)
Q Consensus 154 i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spq 233 (464)
|++++|+||.++||+||+||+|++..+++++.+| +|++ ++|+.++||++|||
T Consensus 190 i~~~iR~f~~~~gFiEVeTPiL~~~~gGa~a~pF-~t~~---------------------------~~~~~~~yL~~SpE 241 (505)
T PRK12445 190 ILAAIRQFMVARGFMEVETPMMQVIPGGASARPF-ITHH---------------------------NALDLDMYLRIAPE 241 (505)
T ss_pred HHHHHHHHHHHCCCEEeeCCeeEecCCCCcccce-eccc---------------------------ccCCcceeeecCHH
Confidence 9999999999999999999999988776667799 4543 46899999999999
Q ss_pred HHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcc-----cccc
Q 012426 234 LNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE-----DMDF 307 (464)
Q Consensus 234 l~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~-----~i~~ 307 (464)
|||| ++++|++||||||||||||++ |.||||||||||||++|+||+|+|+++|+||+++++.+++.+.. .+++
T Consensus 242 LylKrlivgG~~rVfeIg~~FRnE~~-~~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~l~~~~~~~~~~~~~~~~i~~ 320 (505)
T PRK12445 242 LYLKRLVVGGFERVFEINRNFRNEGI-SVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDF 320 (505)
T ss_pred HHHHHHHhccCCcEEEEehhccCCCC-CCCcCcccceeeeeeecCCHHHHHHHHHHHHHHHHHHHhcccceecCceeccC
Confidence 9995 788999999999999999999 79999999999999999999999999999999999998865432 3455
Q ss_pred cccccccchHHHHhhhhC-CCCC-CCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCc
Q 012426 308 FNTWIEKGIIDRLSTVAE-RDFV-QLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 385 (464)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~-~~~~-~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~ 385 (464)
..+|.+.++.++++.+.+ .++. ..+.+++.+++++.|++++....+|..++. ....++++.+. +|+||+|||.+++
T Consensus 321 ~~pf~rit~~eai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vE~~l~-~P~Fv~dyP~~~s 398 (505)
T PRK12445 321 GKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTE-IFDEVAEAHLI-QPTFITEYPAEVS 398 (505)
T ss_pred CCCceEEEHHHHHHHHhCCCCccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHH-HHHHHHHhhcC-CCEEEECCCchhC
Confidence 567777777777776665 2332 235666777777767654333334433443 44445676665 8999999999999
Q ss_pred ccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHc------CCCccch--HHHHHHhhhhh--------
Q 012426 386 AFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDSY--WWYLDLRHYGS-------- 449 (464)
Q Consensus 386 pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~------g~~~~~~--~~yl~~~~~G~-------- 449 (464)
|||+++++|+++++|||||++|+ ||+|||+|++||++|++||+++ |.++... +|||+|++|||
T Consensus 399 plak~~~~~p~~~~rFeL~i~G~-Ei~ng~~El~dp~eq~~rf~~q~~~~~~g~~e~~~~de~yl~al~yG~PP~gG~Gi 477 (505)
T PRK12445 399 PLARRNDVNPEITDRFEFFIGGR-EIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGI 477 (505)
T ss_pred cccccCCCCCCceEEEEEEeCCE-EEcccccccCCHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHcCCCCCCeEEE
Confidence 99998888889999999999996 9999999999999999999843 6665543 89999999998
Q ss_pred h---HhhhhcCCCCCCCC
Q 012426 450 G---LVFILIKVTNFLNC 464 (464)
Q Consensus 450 g---L~mll~~~~~I~~~ 464 (464)
| |+|++||.+||||+
T Consensus 478 GiDRLvMlltg~~sIrdv 495 (505)
T PRK12445 478 GIDRMIMLFTNSHTIRDV 495 (505)
T ss_pred hHHHHHHHHcCCCchheE
Confidence 3 99999999999985
|
|
| >PRK00484 lysS lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-87 Score=700.47 Aligned_cols=419 Identities=20% Similarity=0.302 Sum_probs=342.6
Q ss_pred cccccceecccccCCCCCCC----CCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc---chhhhhcC
Q 012426 6 GEFRKKLKIVDVKGGPNEGL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVKSG 78 (464)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~~~----~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~---~~~~~~~~ 78 (464)
++|.++++|+++.+.+.+.. ...++.|+|+|||+++|.+|+++|++|||++| .||||++++.. .|+.+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~G~v~~~R~~g~~~Fi~lrD~~g--~iQ~v~~~~~~~~~~~~~~~~- 103 (491)
T PRK00484 27 NKFERTHTAAELRAKYDDKEKEELEELEIEVSVAGRVMLKRVMGKASFATLQDGSG--RIQLYVSKDDVGEEALEAFKK- 103 (491)
T ss_pred CCCcCccCHHHHHHHhccccchhhcccCcEEEEEEEEEEEecCCceEEEEEEcCCc--cEEEEEECCcCCHHHHHHHhc-
Confidence 67899999999988765311 12247899999999999999999999999997 49999987642 3556777
Q ss_pred CCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCcccc---chhhhhhcceecCC-CccchhhhhHHHHH
Q 012426 79 LITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRV---SREFLRTKAHLRPR-TNTFGAVARVRNAL 154 (464)
Q Consensus 79 ~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~~---~~~~~r~~r~l~~R-~~~~~~~~~~rs~i 154 (464)
|+.||+|.|+|+|.+++++ ++||.+++++|||+|..++| .+.+ +.+.+.++||||+| ++.++++|++||+|
T Consensus 104 -l~~g~~v~v~G~v~~t~~g--e~el~~~~~~vls~~~~plP--~~~~~~~~~~~r~r~R~lDl~~~~~~~~~~r~Rs~i 178 (491)
T PRK00484 104 -LDLGDIIGVEGTLFKTKTG--ELSVKATELTLLTKSLRPLP--DKFHGLTDVETRYRQRYVDLIVNPESRETFRKRSKI 178 (491)
T ss_pred -CCCCCEEEEEEEEEEcCCC--cEEEEEeEEEEEeccCCCCC--cccccccchhhhccceeeehhcCHHHHHHHHHHHHH
Confidence 9999999999999999875 49999999999999974444 4433 34556699999998 78999999999999
Q ss_pred HHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhH
Q 012426 155 AYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL 234 (464)
Q Consensus 155 ~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql 234 (464)
++++|+||.++||+||+||+|+++++++++++|. +++ +||+.++||+|||||
T Consensus 179 ~~~iR~f~~~~gF~EVeTPiL~~~~~Ga~a~pF~-t~~---------------------------~~~~~~~yL~~Spql 230 (491)
T PRK00484 179 ISAIRRFLDNRGFLEVETPMLQPIAGGAAARPFI-THH---------------------------NALDIDLYLRIAPEL 230 (491)
T ss_pred HHHHHHHHHHCCCEEEECCceeccCCCccceeee-ecc---------------------------ccCCCceEeccCHHH
Confidence 9999999999999999999999887777789995 332 578999999999999
Q ss_pred HHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCc-----cccccc
Q 012426 235 NAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK-----EDMDFF 308 (464)
Q Consensus 235 ~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~-----~~i~~~ 308 (464)
||| ++++|++||||||||||||+++ .||||||||||||++|+|++|+|+++|+||+++++.+.+++. ..+++.
T Consensus 231 ~lk~l~v~g~~rVfei~~~FR~E~~~-~rH~pEFt~lE~e~a~~d~~d~m~~~E~li~~i~~~~~~~~~i~~~~~~~~~~ 309 (491)
T PRK00484 231 YLKRLIVGGFERVYEIGRNFRNEGID-TRHNPEFTMLEFYQAYADYNDMMDLTEELIRHLAQAVLGTTKVTYQGTEIDFG 309 (491)
T ss_pred HHHHHHhccCCcEEEEecceecCCCC-CCcCCceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCceEecCCEeecCC
Confidence 996 6789999999999999999997 599999999999999999999999999999999999886432 122333
Q ss_pred ccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccc
Q 012426 309 NTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY 388 (464)
Q Consensus 309 ~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy 388 (464)
.+|.+.++.++++...|.++...+.+++.+.+++.+.+......||..+...++.+ +++.+. +||||+|||..++|||
T Consensus 310 ~pf~rity~eai~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-ve~~~~-~P~Fi~dyP~~~~pf~ 387 (491)
T PRK00484 310 PPFKRLTMVDAIKEYTGVDFDDMTDEEARALAKELGIEVEKSWGLGKLINELFEEF-VEPKLI-QPTFITDYPVEISPLA 387 (491)
T ss_pred CCceEEEHHHHHHHHhCCCcccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH-hhhhcC-CcEEEECCChHHhhhh
Confidence 44555555555555555554444444444444555554433345666677777776 555555 7999999999999999
Q ss_pred cccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHc------CCCcc-ch-HHHHHHhhhhh--------h--
Q 012426 389 MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRD-SY-WWYLDLRHYGS--------G-- 450 (464)
Q Consensus 389 ~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~------g~~~~-~~-~~yl~~~~~G~--------g-- 450 (464)
|.+++|+++++|||||++|+ ||||||+|++||.+|++||+++ |.++. .+ +|||+|++||| |
T Consensus 388 k~~~~~~~~~~rFdL~i~G~-Ei~ngy~El~dp~~q~~r~~~q~~~~~~~~~e~~~~d~~yl~a~~~G~PP~gG~GiGiD 466 (491)
T PRK00484 388 KRHREDPGLTERFELFIGGR-EIANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFMDEDFLRALEYGMPPTGGLGIGID 466 (491)
T ss_pred ccCCCCCCeEEEEEEEECCE-EEecchhhhCCHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHCCCCCCCeEEEeHH
Confidence 98888899999999999998 9999999999999999999742 43332 23 69999999998 2
Q ss_pred -HhhhhcCCCCCCCC
Q 012426 451 -LVFILIKVTNFLNC 464 (464)
Q Consensus 451 -L~mll~~~~~I~~~ 464 (464)
|+|++||.+||||+
T Consensus 467 RLvm~ltg~~~Irdv 481 (491)
T PRK00484 467 RLVMLLTDSPSIRDV 481 (491)
T ss_pred HHHHHHhCCCcHHhc
Confidence 99999999999985
|
|
| >PTZ00417 lysine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-85 Score=697.10 Aligned_cols=421 Identities=14% Similarity=0.218 Sum_probs=360.0
Q ss_pred cccccceecccccCCCCC---CCCCCCCEEEEEEEEeeeecCC-CeEEEEEEeCcCCcceEEEEeCCc-----cchhh-h
Q 012426 6 GEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-----EGYDQ-V 75 (464)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~GwV~~iR~~g-~~~Fi~LrD~sg~~~iQvv~~~~~-----~~~~~-~ 75 (464)
++|.++++++++.+.|++ ++...++.|+|+|||+++|.+| +++|++|+|.+| .|||+++++. ..|+. .
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G~k~~F~~L~d~~g--~iQv~~~~~~~~~~~~~~~~~~ 183 (585)
T PTZ00417 106 HKFERTITVPEFVEKYQDLASGEHLEDTILNVTGRIMRVSASGQKLRFFDLVGDGA--KIQVLANFAFHDHTKSNFAECY 183 (585)
T ss_pred CCCcCCcCHHHHHHHhhccCccccccCCeEEEEEEEEeeecCCCCCEEEEEEeCCe--eEEEEEECCccCCCHHHHHHHH
Confidence 568899999999887753 1222456799999999999998 799999999887 5999998652 23544 4
Q ss_pred hcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCccccchhhhhhcceecCC-CccchhhhhHHHHH
Q 012426 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPR-TNTFGAVARVRNAL 154 (464)
Q Consensus 76 ~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~~~~~~~r~~r~l~~R-~~~~~~~~~~rs~i 154 (464)
+. |+.||+|+|+|.+.+++++ ++||.++++++|++|..++|..-...+.+.+.++||||+| ++..+++|++||+|
T Consensus 184 ~~--l~~Gd~V~V~G~~~~t~~g--el~i~~~~i~llsk~l~~lP~~~g~~d~e~r~r~RyLdL~~n~~~~~ifr~RS~I 259 (585)
T PTZ00417 184 DK--IRRGDIVGIVGFPGKSKKG--ELSIFPKETIILSPCLHMLPMKYGLKDTEIRYRQRYLDLMINESTRSTFITRTKI 259 (585)
T ss_pred hc--CCCCCEEEEEeEEcCCCCc--eEEEEEEEEEEEecCCCCCCcccCCCCcccccccchhhhhcCHHHHHHHHHHHHH
Confidence 66 9999999999999998765 4999999999999998667764212344566689999999 77899999999999
Q ss_pred HHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhH
Q 012426 155 AYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL 234 (464)
Q Consensus 155 ~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql 234 (464)
++++|+||.++||+||+||+|+++.+++++.+|. |+++ +++.++||++||||
T Consensus 260 i~aiR~Ff~~rGFlEVeTPiL~~~~GGA~a~PF~-T~~n---------------------------~~d~~lYLriSpEL 311 (585)
T PTZ00417 260 INYLRNFLNDRGFIEVETPTMNLVAGGANARPFI-THHN---------------------------DLDLDLYLRIATEL 311 (585)
T ss_pred HHHHHHHHHHCCeEEEeCCeeeccCCcccceeEE-eccc---------------------------CCCcceEEeecHHH
Confidence 9999999999999999999999997777788894 5543 57899999999999
Q ss_pred HHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCc-----------
Q 012426 235 NAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK----------- 302 (464)
Q Consensus 235 ~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~----------- 302 (464)
||+ |+++|++||||||||||||+++ .||||||||||||++|+||+|+|+++|+||++++..+.+...
T Consensus 312 ~lKrLlvgG~~rVfeIgp~FRnE~~~-~rHnpEFTmlE~y~ay~dy~dlM~l~E~Li~~v~~~v~g~~~~~~~~~g~~~~ 390 (585)
T PTZ00417 312 PLKMLIVGGIDKVYEIGKVFRNEGID-NTHNPEFTSCEFYWAYADFYDLIKWSEDFFSQLVMHLFGTYKILYNKDGPEKD 390 (585)
T ss_pred HHHHHHHhCCCCEEEEcccccCCCCC-CCccceeeeeeeeeecCCHHHHHHHHHHHHHHHHHHhcCcceeeecccccccc
Confidence 995 6789999999999999999997 799999999999999999999999999999999998875421
Q ss_pred -ccccccccccccchHHHHhhhhCCCCCC-----CCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCee
Q 012426 303 -EDMDFFNTWIEKGIIDRLSTVAERDFVQ-----LSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVI 376 (464)
Q Consensus 303 -~~i~~~~~~~~~~~~~~l~~~~~~~~~~-----it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~f 376 (464)
.++++..+|.+.++.+++++.+|.++.. .++++|++++++.|+++..+.+|+..++.++++++.+.+.+ +|+|
T Consensus 391 ~~~i~~~~pf~rit~~ea~~~~~g~~~~~~~~~~~~~~el~~~l~~~g~~~~~~~~~~~~l~~l~e~~vE~~l~~-~PtF 469 (585)
T PTZ00417 391 PIEIDFTPPYPKVSIVEELEKLTNTKLEQPFDSPETINKMINLIKENKIEMPNPPTAAKLLDQLASHFIENKYPN-KPFF 469 (585)
T ss_pred cccccCCCCceeccHHHHHHHHhCCCccccccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhhCC-CcEE
Confidence 2466777899999999999999987642 58999999999998877666788889999999986665543 6999
Q ss_pred eeeCCCCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHH------cCCCccch---HHHHHHhhh
Q 012426 377 VSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE------LKLNRDSY---WWYLDLRHY 447 (464)
Q Consensus 377 I~~yP~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~------~g~~~~~~---~~yl~~~~~ 447 (464)
|+|||..++|||+...+||++++|||||++|+ ||+|||+|++||.+|++||++ .| +.+.+ ++||+|++|
T Consensus 470 I~dyP~~~sPLak~~~~dp~v~eRFELfi~G~-EiangysELnDp~eQr~Rf~~q~~~r~~g-~~e~~~~Dedfl~Aley 547 (585)
T PTZ00417 470 IIEHPQIMSPLAKYHRSKPGLTERLEMFICGK-EVLNAYTELNDPFKQKECFSAQQKDREKG-DAEAFQFDAAFCTSLEY 547 (585)
T ss_pred EECCChhhCchhhhcCCCCCeEEeEEeEECCE-EEccCcchhcCHHHHHHHHHHHHHHHHcC-CCcccccHHHHHHHHHc
Confidence 99999999999998778899999999999997 999999999999999998763 35 44443 349999999
Q ss_pred hh--------h---HhhhhcCCCCCCCC
Q 012426 448 GS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 448 G~--------g---L~mll~~~~~I~~~ 464 (464)
|| | |+|++||.+||||+
T Consensus 548 GmPPtgG~GiGIDRLvMlltg~~sIrdV 575 (585)
T PTZ00417 548 GLPPTGGLGLGIDRITMFLTNKNCIKDV 575 (585)
T ss_pred CCCCCceEEEcHHHHHHHHcCCcchhee
Confidence 98 2 99999999999985
|
|
| >PTZ00385 lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-84 Score=690.96 Aligned_cols=424 Identities=14% Similarity=0.197 Sum_probs=354.9
Q ss_pred CCCcccccceecccccCCCCC---CCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc----chhhh
Q 012426 3 SKVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE----GYDQV 75 (464)
Q Consensus 3 ~~~~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~----~~~~~ 75 (464)
.++++|.++++++++.+.|++ ++...++.|+|+|||+++|.+||++|++|||++| .||||++++.. .++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrV~~~R~~Gk~~F~~LrD~~G--~IQvv~~~~~~~~~~~~~~~ 155 (659)
T PTZ00385 78 AAYSSFRGITPISEVRERYGYLASGDRAAQATVRVAGRVTSVRDIGKIIFVTIRSNGN--ELQVVGQVGEHFTREDLKKL 155 (659)
T ss_pred CccccCcccccHHHHHHHhhccccccccCCCEEEEEEEEEeeeccCCeEEEEEEECCc--eEEEEEECCccCCHHHHHHH
Confidence 467889999999999988764 1122356799999999999999999999999997 49999987642 24444
Q ss_pred -hcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCC-CCCC-C--ccc---cchhhhhhcceecCC-Cccchh
Q 012426 76 -KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDP-SYPI-Q--KKR---VSREFLRTKAHLRPR-TNTFGA 146 (464)
Q Consensus 76 -~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~-~~P~-~--~~~---~~~~~~r~~r~l~~R-~~~~~~ 146 (464)
+. |+.||+|.|+|+|.+++++ ++||+++++++||++.. +.|+ + .+. .+.+.+.++|||||| ++.+++
T Consensus 156 ~~~--l~~gdiV~V~G~v~~t~~G--eleI~~~~i~lLska~~~~~~~~p~~~k~~~~~d~e~R~r~RyLDL~~n~~~~~ 231 (659)
T PTZ00385 156 KVS--LRVGDIIGADGVPCRMQRG--ELSVAASRMLILSPYVCTDQVVCPNLRGFTVLQDNDVKYRYRFTDMMTNPCVIE 231 (659)
T ss_pred HhC--CCCCCEEEEEEEEEecCCc--eEEEEeeEEEEechhhhccccCCCCCccccccCChhhhcccceeeeecCHHHHH
Confidence 46 9999999999999998865 49999999999999642 2221 2 132 366778899999997 678999
Q ss_pred hhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccc
Q 012426 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPA 226 (464)
Q Consensus 147 ~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 226 (464)
+|++||+|++++|+||.++||+||+||+|+++++++++++|. +++ ++|+.++
T Consensus 232 ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~~ga~a~pF~-t~~---------------------------n~~~~~~ 283 (659)
T PTZ00385 232 TIKKRHVMLQALRDYFNERNFVEVETPVLHTVASGANAKSFV-THH---------------------------NANAMDL 283 (659)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCEeeccCCCCCccceE-eec---------------------------ccCCCCE
Confidence 999999999999999999999999999999999999999994 443 3578999
Q ss_pred ccccchhHHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcc--
Q 012426 227 FLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE-- 303 (464)
Q Consensus 227 yL~~Spql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~-- 303 (464)
||+|||||||| ++++|++||||||||||||+++ .||||||||||||++|+||+|+|+++|+||++++..+.+...-
T Consensus 284 yL~~SPELylKrLivgG~erVyeIg~~FRnE~~~-~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~~~~~v~g~~~~~~ 362 (659)
T PTZ00385 284 FLRVAPELHLKQCIVGGMERIYEIGKVFRNEDAD-RSHNPEFTSCEFYAAYHTYEDLMPMTEDIFRQLAMRVNGTTVVQI 362 (659)
T ss_pred EecCChHHHHHHHhhcccCCEEEEeceecCCCCC-CCccccccceeeeeecCCHHHHHHHHHHHHHHHHHHhcCCeeEEe
Confidence 99999999996 7789999999999999999996 8999999999999999999999999999999999988764321
Q ss_pred ----------cccccccccccchHHHHhhhhCCCCCC---C-CHHHH---HHHHHhcCCCcccCCCccccccHHHHHHhh
Q 012426 304 ----------DMDFFNTWIEKGIIDRLSTVAERDFVQ---L-SYTDA---IELLIKAKKKFEFLVKWGCDLQSEHERYLT 366 (464)
Q Consensus 304 ----------~i~~~~~~~~~~~~~~l~~~~~~~~~~---i-t~~ea---~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~ 366 (464)
++++..+|.+.++.+.+.+.+|.+++. + +-+++ ..++++.|++++....+|..++..++.++.
T Consensus 363 ~~~~~~g~~~~i~~~~Pf~Rit~~d~~~e~~G~d~~~~~dl~~~~e~~~~~~~~~~~gi~~~~~~~~g~~~~~lfe~~ve 442 (659)
T PTZ00385 363 YPENAHGNPVTVDLGKPFRRVSVYDEIQRMSGVEFPPPNELNTPKGIAYMSVVMLRYNIPLPPVRTAAKMFEKLIDFFIT 442 (659)
T ss_pred eccccCCCcccccCCCCceEEeHHHHHHHHhCCCCCccccCCCHHHHHHHHHHHHHcCCCCCcccchhHHHHHHHHHHHH
Confidence 355556888888888888888877643 3 33333 355666677665444557777778888765
Q ss_pred hhcccCCCeeeeeCCCCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHH-----HcCCCccch---
Q 012426 367 EEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD-----ELKLNRDSY--- 438 (464)
Q Consensus 367 e~~~~~~p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~-----~~g~~~~~~--- 438 (464)
+. +. +|+||+|||.+++||++.+++||++++|||||++|+ ||+|||+|+|||.+|++||+ +.+.|++.+
T Consensus 443 ~~-l~-qPtFI~dyP~e~sPLak~~~~dp~~teRFELfi~G~-EiaNGysELnDp~eQr~Rfe~q~~~k~~gd~ea~~~D 519 (659)
T PTZ00385 443 DR-VV-EPTFVMDHPLFMSPLAKEQVSRPGLAERFELFVNGI-EYCNAYSELNDPHEQYHRFQQQLVDRQGGDEEAMPLD 519 (659)
T ss_pred Hh-hC-CcEEEeCCccccCcccccCCCCCCeEEEEEEEeCCe-EeeecccccCCHHHHHHHHHHHHHHHhcCCchhhccH
Confidence 54 45 899999999999999998888899999999999997 99999999999999999994 456666666
Q ss_pred HHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 439 WWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 439 ~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
+|||+|++||| | |+|++||.+||||+
T Consensus 520 edfL~AleyGmPPtgG~GIGIDRLvMlltg~~sIReV 556 (659)
T PTZ00385 520 ETFLKSLQVGLPPTAGWGMGIDRALMLLTNSSNIRDG 556 (659)
T ss_pred HHHHHHHHcCCCCCCceEEcHHHHHHHHcCCcchhhe
Confidence 89999999999 2 99999999999985
|
|
| >COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-84 Score=657.41 Aligned_cols=419 Identities=20% Similarity=0.288 Sum_probs=367.8
Q ss_pred cccccceecccccCCCCCC--CCCC--CCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc---cchhh-hhc
Q 012426 6 GEFRKKLKIVDVKGGPNEG--LDRV--GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQ-VKS 77 (464)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~~--~~~~--~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~---~~~~~-~~~ 77 (464)
+.|.++++++++.+.|.+. +... ...|+|+|||+++|.+||++|++|+|++| +||++++++. ..|+. .+.
T Consensus 34 ~~~~~~~~~~~l~~~~~~~~~~el~~~~~~v~vAGRi~~~R~~GK~~F~~i~d~~g--kiQ~yi~k~~~~~~~~~~~~~~ 111 (502)
T COG1190 34 NDFERTHTSADLREKYADKTKEELEALNIEVSVAGRIMTIRNMGKASFADLQDGSG--KIQLYVNKDEVGEEVFEALFKK 111 (502)
T ss_pred CcCcccccHHHHHHHHhccchhhhhhccceeEEecceeeecccCceeEEEEecCCc--eEEEEEeccccchhhHHHHHhc
Confidence 5688889999999877541 1122 23499999999999999999999999997 5999999875 34554 455
Q ss_pred CCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCccccch---hhhhhcceecCCCc-cchhhhhHHHH
Q 012426 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR---EFLRTKAHLRPRTN-TFGAVARVRNA 153 (464)
Q Consensus 78 ~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~~~~---~~~r~~r~l~~R~~-~~~~~~~~rs~ 153 (464)
++.||+|+|+|.+.+|++++ ++|.|+++++|+||+ .|+|.|++++ +.+-+.||+|+-.+ ..+..|..||+
T Consensus 112 --~dlGDiigv~G~~~~T~~Ge--lSv~v~~~~lLsKsL--~pLPeK~hgL~D~E~RyR~RylDLi~N~e~r~~f~~Rs~ 185 (502)
T COG1190 112 --LDLGDIIGVEGPLFKTKTGE--LSVSVEELRLLSKSL--RPLPEKFHGLTDKEIRYRQRYLDLIVNPESRQTFIKRSK 185 (502)
T ss_pred --cccCCEEeeeeeeeecCCCc--eEEEEEEEeeecccC--CCCChhhcCCccHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999999999999876 999999999999999 7888888866 44557999999965 89999999999
Q ss_pred HHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchh
Q 012426 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQ 233 (464)
Q Consensus 154 i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spq 233 (464)
|++++|+||.++||+||+||+|+...+++++.|| +|+||. ++.++||++|||
T Consensus 186 ii~~iR~fl~~~gFlEVETP~lq~i~GGA~ArPF-~ThhNa---------------------------ld~dlyLRIApE 237 (502)
T COG1190 186 IIRAIREFLDDRGFLEVETPMLQPIPGGAAARPF-ITHHNA---------------------------LDMDLYLRIAPE 237 (502)
T ss_pred HHHHHHHHHHHCCCeEeccccccccCCCcccccc-eeeecc---------------------------cCCceEEeeccH
Confidence 9999999999999999999999999999999999 687764 578899999999
Q ss_pred HHH-HHHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcC-----cccccc
Q 012426 234 LNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC-----KEDMDF 307 (464)
Q Consensus 234 l~l-qll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~-----~~~i~~ 307 (464)
||| +++++|++||||||++||||++| .||||||||||+|+||+||+|+|+++|+||+.+++.+.+.. ..++++
T Consensus 238 LyLKRliVGG~erVfEIgr~FRNEGid-~tHNPEFTmlE~Y~AYaDy~D~m~ltE~Li~~~a~~v~gt~~v~y~~~~id~ 316 (502)
T COG1190 238 LYLKRLIVGGFERVFEIGRNFRNEGID-TTHNPEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTTKVTYGGQEIDF 316 (502)
T ss_pred HHHHHHHhcCchhheeeccccccCCCc-cccCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCeEEEECCEeEec
Confidence 999 79999999999999999999996 89999999999999999999999999999999999998743 357899
Q ss_pred cccccccchHHHHhhhhCCC-CCCCCHHHHHHHHHhcCCCcccC--CCccccccHHHHHHhhhhcccCCCeeeeeCCCCC
Q 012426 308 FNTWIEKGIIDRLSTVAERD-FVQLSYTDAIELLIKAKKKFEFL--VKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEI 384 (464)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~~~-~~~it~~ea~~~l~~~~~~~~~~--~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~ 384 (464)
.++|.+.++.+++.+.+|.. +...+.++|.+++++.+++.... ..+|..+...+|..+ |..+. +|+||+|||.++
T Consensus 317 ~~pf~ri~m~dal~e~~g~~~~~~~~~e~~~~~ak~~~i~~~~~~~~~~g~ll~~lFe~~v-E~~li-qPTFv~d~P~ei 394 (502)
T COG1190 317 SKPFKRITMVDALKEYLGVDFDDLFDDEEAKELAKKHGIEVEKYGTWGLGHLLNELFEELV-EAKLI-QPTFVTDHPVEI 394 (502)
T ss_pred CCCeeeeehHHHHHHHhCccccccCCHHHHHHHHHHhCCCcCccccccHHHHHHHHHHHHh-hhhhc-CCceeecCcccc
Confidence 99999999999999999985 45668899999999998775443 336677888999884 44445 799999999999
Q ss_pred cccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHH------cCCCccc--hHHHHHHhhhhh-------
Q 012426 385 KAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE------LKLNRDS--YWWYLDLRHYGS------- 449 (464)
Q Consensus 385 ~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~------~g~~~~~--~~~yl~~~~~G~------- 449 (464)
+||+++++++|++++|||||+.|. ||||||.|++||..|++||.+ .|-+.+. .++|++|++|||
T Consensus 395 SPLak~~~~~p~~teRFElfi~g~-EiaNaysELNDP~dQ~~RF~~Q~~~k~~Gddea~~~Dedfv~ALeyGmPPTgG~G 473 (502)
T COG1190 395 SPLAKRHRSNPGLTERFELFIGGK-EIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDEDFVEALEYGMPPTGGLG 473 (502)
T ss_pred CccccCCCCCcchhhhheeeeccE-EeeeccchhcCHHHHHHHHHHHHHHHHcCCccccccCHHHHHHHhcCCCCCCCcc
Confidence 999999999999999999999996 999999999999999999975 3544332 388999999999
Q ss_pred -h---HhhhhcCCCCCCCC
Q 012426 450 -G---LVFILIKVTNFLNC 464 (464)
Q Consensus 450 -g---L~mll~~~~~I~~~ 464 (464)
| |||+|||++||||.
T Consensus 474 iGIDRLvMllT~~~sIRdV 492 (502)
T COG1190 474 IGIDRLVMLLTNSPSIRDV 492 (502)
T ss_pred ccHHHHHHHHcCCCchhhe
Confidence 2 99999999999983
|
|
| >KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-81 Score=614.55 Aligned_cols=403 Identities=24% Similarity=0.414 Sum_probs=353.6
Q ss_pred eecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc---chhhhhc-CCCCCCcEEE
Q 012426 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVKS-GLITTGASIW 87 (464)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~---~~~~~~~-~~l~~g~~V~ 87 (464)
+.+.||.. +..++.|+|+|||+..|..||++|+.||++.. +|||++..+.. ...+++. ++|+.+|+|.
T Consensus 71 ~~v~dl~~------~~~~~~V~vRgrVhtsr~~GK~~FlvLRq~~~--tVQ~~~~~~~~~~isk~Mvkf~~~is~ESiV~ 142 (533)
T KOG0556|consen 71 TDVSDLDE------SNDGSEVLVRGRVHTSRLKGKLCFLVLRQQGS--TVQCLVAVNEDGTISKQMVKFAGSISKESIVD 142 (533)
T ss_pred eehhhhhh------hcCCceEEEEEEEeeccccceEEEEEEeccCc--eEEEEEEcCCCchHHHHHHHHHhhcCcceEEE
Confidence 45555555 47789999999999999999999999999975 69999976543 1122221 2499999999
Q ss_pred EEEEEEeCCC-----CCceEEEEEeeEEEEecCCCCCCCCcccc--------------------chhhhhhcceecCCCc
Q 012426 88 IQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKRV--------------------SREFLRTKAHLRPRTN 142 (464)
Q Consensus 88 V~G~v~~~~~-----~~~~~el~~~~i~vls~~~~~~P~~~~~~--------------------~~~~~r~~r~l~~R~~ 142 (464)
|.|+|++.+. ..|++||++.+|.|||.+.+.+|++.++. ..+++++||.||||||
T Consensus 143 v~g~v~k~~~~i~scT~qdvEi~v~~iyviS~a~~~LPl~veDasrse~~eE~a~~~~~~~~~Vn~dtRLdnRvlDLRtp 222 (533)
T KOG0556|consen 143 VRGVVVKVKEPIKSCTVQDVEIHVRKIYVISIALPNLPLQVEDASRSEPDEEKAAEPESTLARVNLDTRLDNRVLDLRTP 222 (533)
T ss_pred EEEEEecCCCcccccccceeEEEEEEEEEEecccccCCeeehhhcccccchhhhcCCccccceecccccccceeeecccc
Confidence 9999998653 35789999999999999998899875432 2345679999999999
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 222 (464)
+++++||+++.+..++|+||..+||+||+||+|.++++||++++|.| +||
T Consensus 223 tnqAiFriq~gvc~~FRe~L~~kgF~EIhTpKli~asSEGGanvF~v------------------------------~Yf 272 (533)
T KOG0556|consen 223 TNQAIFRIQAGVCFAFREYLRSKGFVEIHTPKLIGASSEGGANVFRV------------------------------SYF 272 (533)
T ss_pred cchheeehHHHHHHHHHHHHHhcCcceecccccccccCCCCceeEEE------------------------------Eec
Confidence 99999999999999999999999999999999999999999999987 599
Q ss_pred CcccccccchhHHHHH-HhhccCceEEEccccccCCCCCccccccchhccceeccCC-HHHHHHHHHHHHHHHHHHHhhc
Q 012426 223 EKPAFLTVSGQLNAET-YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMACATAYLQYVVRYILDN 300 (464)
Q Consensus 223 ~~~~yL~~Spql~lql-l~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~-~~dlm~~~e~li~~i~~~~~~~ 300 (464)
+.++||+||||||+|| ++++|+|||+||||||||+|+|+||+.||+-||.||+|.. |+++|+++.+++..|++.+.++
T Consensus 273 k~~A~LAQSPQLyKQMaI~gdf~rVyeIGpVfRAEdSnthRhltEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~l~er 352 (533)
T KOG0556|consen 273 KQKAYLAQSPQLYKQMAICGDFERVYEIGPVFRAEDSNTHRHLTEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKGLRER 352 (533)
T ss_pred cCcchhhcChHHHHHHHHhcchhheeeecceeeccccchhhhhHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999986 6788999999999999999999999999999999999984 9999999999999999999999
Q ss_pred CcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhh----hhcccCCCee
Q 012426 301 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLT----EEAFGGCPVI 376 (464)
Q Consensus 301 ~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~----e~~~~~~p~f 376 (464)
|..+|+..+++++.+-... + .|..+++|.|++++|++.|++. ...+||+++-|+.|+ +++.+ ++++
T Consensus 353 y~~Eie~Vr~qyp~e~fkf----~-~~~lrl~~~e~v~mLreaGvE~----g~~dDlsTe~Ek~LG~lV~eky~t-dfyi 422 (533)
T KOG0556|consen 353 YAKEIETVRKQYPFEPFKF----L-EPPLRLTFKEGVAMLREAGVEM----GDEDDLSTESEKKLGQLVREKYDT-DFYI 422 (533)
T ss_pred HHHHHHHHhhcCCCccccc----C-CCceEeehHHHHHHHHHcCccc----CCccccCChhHHHHHHHHHHHhCC-cEEE
Confidence 9999998888766543322 2 4567899999999999999853 345799999999885 45555 8999
Q ss_pred eeeCCCCCcccccccC-CCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh------
Q 012426 377 VSDYPKEIKAFYMRQN-DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS------ 449 (464)
Q Consensus 377 I~~yP~~~~pfy~~~~-~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~------ 449 (464)
+.+||.+++|||.+++ .||+++++||+|++| .||.+|.||+|||+.|.+|++++|+++..+..|||+++||+
T Consensus 423 ldkyP~avRPFYTmpd~~~p~ySnSyD~fmRG-eEIlSGAQRIhdpe~L~era~~hGid~~~i~~YidsFryG~PPHaGg 501 (533)
T KOG0556|consen 423 LDKYPLAVRPFYTMPDPENPRYSNSYDFFMRG-EEILSGAQRIHDPELLVERAKEHGIDPSKISTYIDSFRYGAPPHAGG 501 (533)
T ss_pred EccCccccccccccCCCCCCCcccchhheech-hhhhccccccCCHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCCCCC
Confidence 9999999999996665 467899999999999 69999999999999999999999999999999999999998
Q ss_pred --h---HhhhhcCCCCCCC
Q 012426 450 --G---LVFILIKVTNFLN 463 (464)
Q Consensus 450 --g---L~mll~~~~~I~~ 463 (464)
| ++|+++|.+|||-
T Consensus 502 GIGLERvvmlyl~L~nIR~ 520 (533)
T KOG0556|consen 502 GIGLERVVMLYLGLNNIRK 520 (533)
T ss_pred cccHHHHHHHHhcCCcchh
Confidence 2 8999999999983
|
|
| >PRK02983 lysS lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-81 Score=702.89 Aligned_cols=412 Identities=17% Similarity=0.223 Sum_probs=345.3
Q ss_pred cccccceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc---chhhh-hcCCCC
Q 012426 6 GEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQV-KSGLIT 81 (464)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~---~~~~~-~~~~l~ 81 (464)
++|.++++|+++.+. ..|++|+|+|||+++|.+||++|++|||++| .||||++++.. .++.+ +. |+
T Consensus 634 ~~~~~~~~~~~~~~~------~~~~~V~v~Grv~~~R~~G~~~F~~lrD~~g--~iQ~v~~~~~~~~~~~~~~~~~--l~ 703 (1094)
T PRK02983 634 VGVPPTHTVAEALDA------PTGEEVSVSGRVLRIRDYGGVLFADLRDWSG--ELQVLLDASRLEQGSLADFRAA--VD 703 (1094)
T ss_pred CCCcCccCHHHHHHh------cCCCEEEEEEEEEEEeeCCCeEEEEEEeCCe--eEEEEEECCccchhhHHHHHhc--CC
Confidence 568899999999874 6788999999999999999999999999997 59999987642 24443 45 99
Q ss_pred CCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCcccc---chhhhhhcceecCC-CccchhhhhHHHHHHHH
Q 012426 82 TGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRV---SREFLRTKAHLRPR-TNTFGAVARVRNALAYA 157 (464)
Q Consensus 82 ~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~~---~~~~~r~~r~l~~R-~~~~~~~~~~rs~i~~~ 157 (464)
.||+|.|+|++.+++++ ++||.+++++++++|. .|+|.+.+ +.+.+.++||||+| ++.++++|++||+|+++
T Consensus 704 ~gd~V~v~G~v~~t~~g--e~ei~~~~i~ll~k~~--~plP~k~~~~~d~e~R~r~R~lDL~~n~~~~~~~r~Rs~i~~~ 779 (1094)
T PRK02983 704 LGDLVEVTGTMGTSRNG--TLSLLVTSWRLAGKCL--RPLPDKWKGLTDPEARVRQRYLDLAVNPEARDLLRARSAVVRA 779 (1094)
T ss_pred CCCEEEEEEEEEEcCCC--CEEEEEeEEEEEeccC--cCCCCccccCCChhhcchhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999875 4999999999999998 45555443 34556699999997 57899999999999999
Q ss_pred HHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHH
Q 012426 158 THKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE 237 (464)
Q Consensus 158 ~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lq 237 (464)
+|+||.++||+||+||+|+++.|++++++|. |++ ++|++++||+||||||||
T Consensus 780 iR~fl~~~gFlEVeTPiL~~~~gGa~a~pF~-t~~---------------------------~~~~~~~yLriSPELylK 831 (1094)
T PRK02983 780 VRETLVARGFLEVETPILQQVHGGANARPFV-THI---------------------------NAYDMDLYLRIAPELYLK 831 (1094)
T ss_pred HHHHHHHCCCEEEeCCEeeccCCCcccceeE-eee---------------------------cCCCccchhhcChHHHHH
Confidence 9999999999999999999999988899995 433 478999999999999996
Q ss_pred -HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcc----------ccc
Q 012426 238 -TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE----------DMD 306 (464)
Q Consensus 238 -ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~----------~i~ 306 (464)
++++|++||||||||||||+++ .||||||||||+|++|.||+|+|+++|+||+++++.+.+.... .++
T Consensus 832 rLivgG~erVFEIg~~FRnE~~~-~rHnpEFTmLE~y~a~~dy~d~m~l~E~li~~i~~~v~~~~~~~~~~~~~~~~~i~ 910 (1094)
T PRK02983 832 RLCVGGVERVFELGRNFRNEGVD-ATHNPEFTLLEAYQAHADYDTMRDLTRELIQNAAQAAHGAPVVMRPDGDGVLEPVD 910 (1094)
T ss_pred HHHhcccCceEEEcceecCCCCC-CCccccccchhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCcEEeeCCccccccccc
Confidence 6789999999999999999997 6999999999999999999999999999999999998754321 244
Q ss_pred ccccccccchHHHHhhhhCCCCC-CCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCc
Q 012426 307 FFNTWIEKGIIDRLSTVAERDFV-QLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 385 (464)
Q Consensus 307 ~~~~~~~~~~~~~l~~~~~~~~~-~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~ 385 (464)
+..+|.+.++.+++++..|.++. ..+.+++.+++++.|+++.....+|+.++..+|++ +|+.+. +|+||||||.+++
T Consensus 911 ~~~pf~rit~~eai~~~~g~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~l~~~l~~~~-ve~~~~-~P~Fv~dyP~~~s 988 (1094)
T PRK02983 911 ISGPWPVVTVHDAVSEALGEEIDPDTPLAELRKLCDAAGIPYRTDWDAGAVVLELYEHL-VEDRTT-FPTFYTDFPTSVS 988 (1094)
T ss_pred cCCCceEEEHHHHHHHHhCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHH-HHhhcC-CCEEEECCCcccc
Confidence 55567777777777777776654 33555666667766765433223344445555554 666665 8999999999999
Q ss_pred ccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHH-----cCCCccch---HHHHHHhhhhh--------
Q 012426 386 AFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-----LKLNRDSY---WWYLDLRHYGS-------- 449 (464)
Q Consensus 386 pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~-----~g~~~~~~---~~yl~~~~~G~-------- 449 (464)
||||++++|+++++|||||++|+ ||+|||+|++||.+|++||++ .+.|++.+ +|||++++|||
T Consensus 989 pla~~~~~~p~~~erFdL~i~G~-Ei~ng~~El~Dp~eq~~r~~~q~~~~~~~d~e~~~~De~yl~al~yGmPP~gG~Gi 1067 (1094)
T PRK02983 989 PLTRPHRSDPGLAERWDLVAWGV-ELGTAYSELTDPVEQRRRLTEQSLLAAGGDPEAMELDEDFLQALEYAMPPTGGLGM 1067 (1094)
T ss_pred cccccCCCCCCeeEEEEEEECCE-EEeccccccCCHHHHHHHHHHHHHHHhCCChhhccccHHHHHHHHcCCCCCCeEEe
Confidence 99998888999999999999997 999999999999999998875 46677766 69999999998
Q ss_pred h---HhhhhcCCCCCCCC
Q 012426 450 G---LVFILIKVTNFLNC 464 (464)
Q Consensus 450 g---L~mll~~~~~I~~~ 464 (464)
| |+|++||. ||||+
T Consensus 1068 GiDRLvM~ltg~-sIRdv 1084 (1094)
T PRK02983 1068 GVDRLVMLLTGR-SIRET 1084 (1094)
T ss_pred eHHHHHHHHhCC-ChheE
Confidence 2 99999996 99986
|
|
| >TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-77 Score=631.41 Aligned_cols=406 Identities=21% Similarity=0.301 Sum_probs=321.7
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEE
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (464)
++++|.++... .+|++|+|+|||+++|.+|+++|++|||++|. ||||++++...++.++. |+.||+|.|+
T Consensus 2 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~Gkl~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~--L~~esvV~V~ 71 (583)
T TIGR00459 2 RTHYCGQLRTE------HLGQTVTLAGWVNRRRDLGGLIFIDLRDRSGI--VQVVCDPDADALKLAKG--LRNEDVVQVK 71 (583)
T ss_pred CceeHhhcchh------hCCCEEEEEEEEEEEEcCCCcEEEEEEeCCcc--EEEEEeCCHHHHHHHhc--CCCCCEEEEE
Confidence 67899999864 78999999999999999999999999999984 99999876444666778 9999999999
Q ss_pred EEEEeCC-------CCCceEEEEEeeEEEEecCCCCCCCCcc-cc-chhhhhhcceecCCCccchhhhhHHHHHHHHHHH
Q 012426 90 GNVVPSQ-------GSKQKVELKVNKIVLVGKSDPSYPIQKK-RV-SREFLRTKAHLRPRTNTFGAVARVRNALAYATHK 160 (464)
Q Consensus 90 G~v~~~~-------~~~~~~el~~~~i~vls~~~~~~P~~~~-~~-~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ 160 (464)
|+|.+++ ...+++||.++++++||+|. .+|++.. .. +.+.+.++||||+|++.++++|++||+|++++|+
T Consensus 72 G~v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~-~~P~~~~~~~~~~~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~~iR~ 150 (583)
T TIGR00459 72 GKVSARPEGNINRNLDTGEIEILAESITLLNKSK-TPPLIIEKTDAEEEVRLKYRYLDLRRPEMQQRLKLRHKVTKAVRN 150 (583)
T ss_pred EEEEeCCccccCccCCCCcEEEEEeEEEEeecCC-CCCCcccccccchhhhcccceEEcCCHHHHHHHHHHHHHHHHHHH
Confidence 9998754 34567999999999999996 5677653 22 3344459999999999999999999999999999
Q ss_pred HhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccc-ccccchhHHHH-H
Q 012426 161 FFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPA-FLTVSGQLNAE-T 238 (464)
Q Consensus 161 ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-yL~~Spql~lq-l 238 (464)
||.++||+||+||+|+++++||+++ |.+. . .+++..+ +|+|||||||| +
T Consensus 151 ff~~~gFiEVeTP~L~~s~~eGar~-f~vp-~---------------------------~~~~~~~y~L~qSpQlykq~l 201 (583)
T TIGR00459 151 FLDQQGFLEIETPMLTKSTPEGARD-YLVP-S---------------------------RVHKGEFYALPQSPQLFKQLL 201 (583)
T ss_pred HHHHCCCEEEECCeeccCCCCCCcc-eeee-e---------------------------ecCCCceeecCCCHHHHHHHH
Confidence 9999999999999999999998865 6342 1 1123333 49999999998 5
Q ss_pred HhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHH
Q 012426 239 YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIID 318 (464)
Q Consensus 239 l~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~ 318 (464)
|++|++||||||||||||++++.|| ||||||||||+|+|++|+|+++|+||+++++.+.+ +++..+|.+.++.+
T Consensus 202 ~v~G~ervfqI~~~FR~E~~~t~r~-pEFT~le~E~af~d~~dvm~~~E~li~~v~~~v~~-----~~~~~pf~r~ty~e 275 (583)
T TIGR00459 202 MVSGVDRYYQIARCFRDEDLRADRQ-PEFTQIDMEMSFMTQEDVMELIEKLVSHVFLEVKG-----IDLKKPFPVMTYAE 275 (583)
T ss_pred HhcccCcEEEEcceeeCCCCCCCCC-cccCcceeeecCCCHHHHHHHHHHHHHHHHHHHhC-----CCCCCCceEEEHHH
Confidence 7899999999999999999998888 99999999999999999999999999999998875 23446677777777
Q ss_pred HHhhhhCCCCC----------------------------------------------CCCHHHHHHHHHhcCCC------
Q 012426 319 RLSTVAERDFV----------------------------------------------QLSYTDAIELLIKAKKK------ 346 (464)
Q Consensus 319 ~l~~~~~~~~~----------------------------------------------~it~~ea~~~l~~~~~~------ 346 (464)
+++++ |.+-| +-..++..++.++.|.+
T Consensus 276 a~~~y-GsDkPDlR~~~~~~d~~~~~~~~~f~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~ 354 (583)
T TIGR00459 276 AMERY-GSDKPDLRFPLELIDVTDLFKDSEFKVFSNLINDGGRVKAIRVPGGWAELSRKSIKELRKFAKEYGAKGLAYLK 354 (583)
T ss_pred HHHHH-CCCCCccccCcccccHHHhhccCCcchhhhhhccCCeEEEEEecCCcCccCHhHHHHHHHHHHHcCCCcceEEE
Confidence 77654 33211 11223334444444432
Q ss_pred cccCCCcc---ccccHH-----HHH----------------------------------HhhhhcccCCCeeeeeCCCC-
Q 012426 347 FEFLVKWG---CDLQSE-----HER----------------------------------YLTEEAFGGCPVIVSDYPKE- 383 (464)
Q Consensus 347 ~~~~~~~~---~~l~~~-----~e~----------------------------------~l~e~~~~~~p~fI~~yP~~- 383 (464)
++....++ .-++.+ .+. -++++... +|+||+|||..
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~lG~lr~~l~~~~~l~~~~~~-~~~wV~dfPlfe 433 (583)
T TIGR00459 355 VNEDGINSPIKKFLDEKKGKILLERTDAQNGDILLFGAGSKKIVLDALGALRLKLGKDLGLVDPDLF-SFLWVVDFPMFE 433 (583)
T ss_pred EcCCcCCCchhhhcCHHHHHHHHHHhCCCCCCEEEEecCcchhHHHHHHHHHHHHHHHcCCcCCCCc-eEEEEEeCCCcc
Confidence 11110000 000100 000 02222222 69999999997
Q ss_pred ----------CcccccccCCCCC---------ceeeEEEeeCCccccccCccccccHHHHHHHHHHcCCCcc----chHH
Q 012426 384 ----------IKAFYMRQNDDGR---------TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWW 440 (464)
Q Consensus 384 ----------~~pfy~~~~~d~~---------~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~----~~~~ 440 (464)
..||.+++.+|.. .+++|||+++|+ ||+|||.|+||++.|+++|+..|++.+ .+.+
T Consensus 434 ~~~~~~~~a~hhPfT~p~~~d~~~l~~~p~~~~~~~yDLvlnG~-ElggGs~rihd~~~Q~~~f~~l~~~~ee~~~~f~~ 512 (583)
T TIGR00459 434 KDKEGRLCAAHHPFTMPKDEDLENLEAAPEEALAEAYDLVLNGV-ELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGF 512 (583)
T ss_pred ccCCCceeeeECCCCCCCCCChhhhhcChhhhhhheeeEEEece-EecceeEEeCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 8999998776655 789999999998 999999999999999999998898765 4799
Q ss_pred HHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 441 YLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 441 yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
||+|++||+ | |||+|||.+||||.
T Consensus 513 ll~Al~yG~PPhgG~alG~DRlvmlLt~~~sIRDV 547 (583)
T TIGR00459 513 LLEAFKYGTPPHAGFALGLDRLMMLLTGTDNIRDV 547 (583)
T ss_pred HHHHHhcCCCCcCceeccHHHHHHHHcCCCchhhe
Confidence 999999999 2 99999999999984
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences. |
| >KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-78 Score=603.06 Aligned_cols=419 Identities=18% Similarity=0.245 Sum_probs=361.8
Q ss_pred CcccccceecccccCCCCC---CCCCCCCEEEEEEEEeeeecCC-CeEEEEEEeCcCCcceEEEEeCCc----cchhhh-
Q 012426 5 VGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA----EGYDQV- 75 (464)
Q Consensus 5 ~~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~GwV~~iR~~g-~~~Fi~LrD~sg~~~iQvv~~~~~----~~~~~~- 75 (464)
.|+|-.++++.++.+.|.+ ++...+..|+|+|||+++|.+| |++|++|++++. +||||++.+. ..|.+.
T Consensus 77 phkf~vs~si~~fieky~~l~~ge~~~n~~~svaGRI~s~R~sGsKL~Fydl~~~g~--klQvm~~~~~~~~~~~F~~~~ 154 (560)
T KOG1885|consen 77 PHKFHVSISIPDFIEKYLHLATGEHLDNEIVSVAGRIHSKRESGSKLVFYDLHGDGV--KLQVMANAKKITSEEDFEQLH 154 (560)
T ss_pred cchhhccccHHHHHHHhcCcccccccccceeeeeeeEeeeeccCCceEEEEEecCCe--EEEEEEehhhcCCHHHHHHHH
Confidence 5788899999999987765 5566678899999999999997 899999999963 6999999764 246554
Q ss_pred hcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCccc---cchhhhhhcceecCCC-ccchhhhhHH
Q 012426 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRT-NTFGAVARVR 151 (464)
Q Consensus 76 ~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~---~~~~~~r~~r~l~~R~-~~~~~~~~~r 151 (464)
+. |++||+|+|.|.+.+|+.++ ++|.+.++.+|+||+.++| .+. .+.|.+-+.||+|+.. +.++..|++|
T Consensus 155 ~~--lkrGDiig~~G~pgrt~~gE--LSi~~~~~~lLspcLh~lP--~~~~gLkD~EtRyrqRylDlilN~~~r~~f~~R 228 (560)
T KOG1885|consen 155 KF--LKRGDIIGVSGYPGRTKSGE--LSIIPNEIILLSPCLHMLP--HEHFGLKDKETRYRKRYLDLILNPEVRDRFRIR 228 (560)
T ss_pred hh--hhccCEEeeecCCCcCCCce--EEEeecchheecchhccCC--hhhcCCCcHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 45 99999999999999998875 9999999999999995444 332 2345555799999986 4789999999
Q ss_pred HHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccc
Q 012426 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVS 231 (464)
Q Consensus 152 s~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~S 231 (464)
++|+..+|.||+++||+||+||+|...++++.++|| ||+||. ++..+||++|
T Consensus 229 akII~~iRkfld~rgFlEVETPmmn~iaGGA~AkPF-IT~hnd---------------------------ldm~LylRiA 280 (560)
T KOG1885|consen 229 AKIISYIRKFLDSRGFLEVETPMMNMIAGGATAKPF-ITHHND---------------------------LDMDLYLRIA 280 (560)
T ss_pred HHHHHHHHHHhhhcCceEecchhhccccCccccCce-eecccc---------------------------cCcceeeeec
Confidence 999999999999999999999999999999999999 787763 5788999999
Q ss_pred hhHHH-HHHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCc--------
Q 012426 232 GQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK-------- 302 (464)
Q Consensus 232 pql~l-qll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~-------- 302 (464)
||||+ +|+++|++||||||+.||||++| .+||||||.+|+||||+||+|+|+++|+|++.+++.+.++++
T Consensus 281 PEL~lK~LvVGGldrVYEIGr~FRNEGID-lTHNPEFTTcEfY~AYady~dlm~~TE~l~s~mv~~i~G~~~i~y~p~~~ 359 (560)
T KOG1885|consen 281 PELYLKMLVVGGLDRVYEIGRQFRNEGID-LTHNPEFTTCEFYMAYADYEDLMDMTEELLSGMVKNITGSYKITYHPNGP 359 (560)
T ss_pred hHHHHHHHHhccHHHHHHHHHHhhhcCcc-cccCCCcchHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCceeEeecCCCC
Confidence 99999 58899999999999999999996 899999999999999999999999999999999999987653
Q ss_pred ----ccccccccccccchHHHHhhhhCCCCCC---CCHHHHHHHHHhc----CCCcccCCCccccccHHHHHHhhhhccc
Q 012426 303 ----EDMDFFNTWIEKGIIDRLSTVAERDFVQ---LSYTDAIELLIKA----KKKFEFLVKWGCDLQSEHERYLTEEAFG 371 (464)
Q Consensus 303 ----~~i~~~~~~~~~~~~~~l~~~~~~~~~~---it~~ea~~~l~~~----~~~~~~~~~~~~~l~~~~e~~l~e~~~~ 371 (464)
-+++|..+|+++++++.|++.+|.+|+. +.-+|+-++|... ++++..|-..+..|+++.+.+|. +.+.
T Consensus 360 ~~~~~eldf~~pfrri~mi~~L~k~lgi~l~~~~~l~~~e~~~~L~~~~~~~~v~~p~p~t~arlLdKLvg~flE-~~cv 438 (560)
T KOG1885|consen 360 EEPELELDFTRPFRRIEMIEELEKELGIKLPPGSTLHTEETRELLKSLCVDEAVECPPPRTTARLLDKLVGEFLE-PTCV 438 (560)
T ss_pred CCCceeeeccCCeeeeeHHHHHHHHhCCCCCCccccCchhhHHHHHHHHHhcccCCCCcccHHHHHHHHHhHhhc-cccC
Confidence 2588889999999999999999999974 5667777777664 44443344455678888887754 4666
Q ss_pred CCCeeeeeCCCCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHc------CCCcc--chHHHHH
Q 012426 372 GCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRD--SYWWYLD 443 (464)
Q Consensus 372 ~~p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~------g~~~~--~~~~yl~ 443 (464)
+|+||+|+|..++|+++.+..++++++|||||+.| .||||+|.|++||..|++||.++ |.|.. ..+.|..
T Consensus 439 -nPTFi~~hP~imSPLAK~hrs~~glteRFElFi~~-kEicNAYtElNdP~~Qr~rFe~Q~~~k~~GDDEa~~~De~Fc~ 516 (560)
T KOG1885|consen 439 -NPTFIIDHPQIMSPLAKYHRSKAGLTERFELFIAG-KEICNAYTELNDPVDQRQRFEQQARDKDAGDDEAQMVDEDFCT 516 (560)
T ss_pred -CCeeEcCCchhcCccccccccccchhhHHHHhhhh-HHHhhhhhhhcCHHHHHHHHHHHHHHhhcCCcccccccHHHHH
Confidence 79999999999999999999999999999999999 59999999999999999999854 44432 2488999
Q ss_pred Hhhhhh--------h---HhhhhcCCCCCCC
Q 012426 444 LRHYGS--------G---LVFILIKVTNFLN 463 (464)
Q Consensus 444 ~~~~G~--------g---L~mll~~~~~I~~ 463 (464)
|++||+ | |+|+||+..||+|
T Consensus 517 ALEYGlPPtgGwGmGIDRL~MllTds~~I~E 547 (560)
T KOG1885|consen 517 ALEYGLPPTGGWGMGIDRLVMLLTDSNNIRE 547 (560)
T ss_pred HHHcCCCCCCccccchhhhhhhhcCCcchhh
Confidence 999988 3 9999999999997
|
|
| >KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-74 Score=563.23 Aligned_cols=392 Identities=30% Similarity=0.519 Sum_probs=350.3
Q ss_pred CCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc-cchhhhhcCCCCCCcEEEEEEEEEeCCCC---Cce
Q 012426 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWIQGNVVPSQGS---KQK 101 (464)
Q Consensus 26 ~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~-~~~~~~~~~~l~~g~~V~V~G~v~~~~~~---~~~ 101 (464)
.+.|+.|+|.|||++.|.+++++||.||||+|. +|||++.+. ..|+.+ . |+.++.|.|.|++++.+.| .++
T Consensus 120 ~~r~qrVkv~gWVhrlR~qk~l~FivLrdg~gf--lqCVl~~kl~~~yd~~-~--Ls~essv~vYG~i~~~p~GK~apgg 194 (545)
T KOG0555|consen 120 ENRGQRVKVFGWVHRLRRQKSLIFIVLRDGTGF--LQCVLSDKLCQSYDAL-T--LSTESSVTVYGTIKKLPEGKSAPGG 194 (545)
T ss_pred cccCceEEeehhhHhhhhcCceEEEEEecCCce--EEEEEcchhhhhhccc-c--ccccceEEEEEEEecCcCCCCCCCC
Confidence 477999999999999999999999999999987 999999764 233332 3 9999999999999998654 367
Q ss_pred EEEEEeeEEEEecCCCC---CCCCccccchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeec
Q 012426 102 VELKVNKIVLVGKSDPS---YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178 (464)
Q Consensus 102 ~el~~~~i~vls~~~~~---~P~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~ 178 (464)
.||.|+-++|++.|... .|+. ...+++.++++|||-+|....+.++++|+.+++++|++|.+.|++||.+|.|...
T Consensus 195 hEl~vdy~Eiig~Apag~~~n~ln-e~s~~~~~LdnrHl~iRge~~s~vLK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQT 273 (545)
T KOG0555|consen 195 HELNVDYWEIIGLAPAGGFDNPLN-EESDVDVLLDNRHLVIRGENASKVLKARAALLRAMRDHYFERGYTEVTPPTMVQT 273 (545)
T ss_pred ceEEeeeeeeecccCCCccccccc-ccCCcceEeccceeEEechhHHHHHHHHHHHHHHHHHHHHhcCceecCCCceEEE
Confidence 99999999999998754 4443 3456788899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHHHHhhccCceEEEccccccCCC
Q 012426 179 DCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENS 258 (464)
Q Consensus 179 ~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~rVfeI~~~FR~E~~ 258 (464)
.-||++.+|+. +|||.++||+||+||||+....++++||+|.++||||+|
T Consensus 274 QVEGGsTLFkl------------------------------dYyGEeAyLTQSSQLYLEtclpAlgdvy~I~~SyRAEkS 323 (545)
T KOG0555|consen 274 QVEGGSTLFKL------------------------------DYYGEEAYLTQSSQLYLETCLPALGDVYCIQQSYRAEKS 323 (545)
T ss_pred EecCcceEEee------------------------------cccCchhhccchhHHHHHHhhhhcCceeEecHhhhhhhh
Confidence 99999999976 799999999999999999999999999999999999999
Q ss_pred CCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcc-cccccccccccchHHHHhhhhCCCCCCCCHHHHH
Q 012426 259 NTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE-DMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAI 337 (464)
Q Consensus 259 ~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~-~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~ 337 (464)
.|+|||+|||++|+|++|.+++++|+-+|+|+...+..+++.... .+..+++.. +.+..||.|+.|+|||
T Consensus 324 rTRRHLsEytHVEaE~afltfd~ll~~iE~lvc~~vdr~l~dp~~~li~~lnP~f---------~~P~~PFkRm~Y~dAI 394 (545)
T KOG0555|consen 324 RTRRHLSEYTHVEAECAFLTFDDLLDRIEALVCDSVDRLLEDPIAPLIKQLNPDF---------KAPKRPFKRMNYSDAI 394 (545)
T ss_pred hhhhhhhhheeeeeecccccHHHHHHHHHHHHHHHHHHHHhChhhhhHHHhCCCC---------CCCCCchhcCCHHHHH
Confidence 999999999999999999999999999999999999999876432 333333321 2466799999999999
Q ss_pred HHHHhcCCCccc--CCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccC-CCCCceeeEEEeeCCccccccC
Q 012426 338 ELLIKAKKKFEF--LVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDMLVPRIGELIGG 414 (464)
Q Consensus 338 ~~l~~~~~~~~~--~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~-~d~~~~~~fdl~~~GigEi~~G 414 (464)
+.|+++++..+. ..++|+|+....|+.+.+.++ .|+|+++||..+++|||+.. +|++++++.|+++||||||+||
T Consensus 395 ~wLke~~vk~edg~~fefGdDI~eAaER~mtdtIg--~PIfLtrFpveiKsFYM~rc~dd~~lTESvD~LmPnVGEIvGG 472 (545)
T KOG0555|consen 395 EWLKEHDVKKEDGTDFEFGDDIPEAAERKMTDTIG--VPIFLTRFPVEIKSFYMKRCEDDPRLTESVDVLMPNVGEIVGG 472 (545)
T ss_pred HHHHhcCCcCccCcccccccchhhHHHHhhhhhcC--CceEEeeccccccceeeecccCccccceeeeeecCCccccccc
Confidence 999999765432 357899999999999998754 79999999999999998765 5779999999999999999999
Q ss_pred ccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 415 SQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 415 ~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
|+|+.|.++|.+.+++.|+|+.+|.||+|.++||. | ++|||++.-+||||
T Consensus 473 SMRi~d~eeLlagfkRegId~~pYYWy~DqrkyGt~pHGGyGLGlERfL~wL~~r~~vre~ 533 (545)
T KOG0555|consen 473 SMRIDDSEELLAGFKREGIDPDPYYWYTDQRKYGTCPHGGYGLGLERFLAWLCDRYHVREV 533 (545)
T ss_pred eeeeccHHHHHHHHhhcCCCCCCceEEeeccccccCCCCcccccHHHHHHHHhcccchhhe
Confidence 99999999999999999999999999999999987 2 89999999999998
|
|
| >PLN02903 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-73 Score=602.41 Aligned_cols=411 Identities=21% Similarity=0.288 Sum_probs=310.8
Q ss_pred cccceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc--cchhhhhcCCCCCCcE
Q 012426 8 FRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGAS 85 (464)
Q Consensus 8 ~~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~--~~~~~~~~~~l~~g~~ 85 (464)
..++++|.+|... ++|++|+|+|||+++|++|+++|++|||++|. +|||++++. ..++.++. |+.||+
T Consensus 57 ~~rt~~cg~l~~~------~~gk~V~l~GWV~~~R~~G~l~FidLRD~~G~--iQvV~~~~~~~~~~~~~~~--L~~esv 126 (652)
T PLN02903 57 PSRSHLCGALSVN------DVGSRVTLCGWVDLHRDMGGLTFLDVRDHTGI--VQVVTLPDEFPEAHRTANR--LRNEYV 126 (652)
T ss_pred ccCCCchhhcchh------hCCCEEEEEEEEEEEecCCCcEEEEEEcCCcc--EEEEEeCCccHHHHHHHhc--CCCCCE
Confidence 4578999999884 88999999999999999999999999999985 999998653 22455677 999999
Q ss_pred EEEEEEEEeCC-------CCCceEEEEEeeEEEEecCCCCCCCCcc-------ccchhhhhhcceecCCCccchhhhhHH
Q 012426 86 IWIQGNVVPSQ-------GSKQKVELKVNKIVLVGKSDPSYPIQKK-------RVSREFLRTKAHLRPRTNTFGAVARVR 151 (464)
Q Consensus 86 V~V~G~v~~~~-------~~~~~~el~~~~i~vls~~~~~~P~~~~-------~~~~~~~r~~r~l~~R~~~~~~~~~~r 151 (464)
|.|+|+|..++ ...+++||.+++++|||+|..++|++.. ..+.+.++++||||+|++.++++|++|
T Consensus 127 V~V~G~V~~r~~~~~n~~~~tGeiEl~~~~i~VL~~a~~~lPf~i~~~~~~~~~~~ee~Rl~~RyLDLR~~~~q~~lr~R 206 (652)
T PLN02903 127 VAVEGTVRSRPQESPNKKMKTGSVEVVAESVDILNVVTKSLPFLVTTADEQKDSIKEEVRLRYRVLDLRRPQMNANLRLR 206 (652)
T ss_pred EEEEEEEEeCCCcCcCCCCCCCCEEEEEeEEEEEecCCCCCCccccccccccccCChhhhhccceeecCCHHHHHHHHHH
Confidence 99999999762 1236699999999999999655676542 246777889999999999999999999
Q ss_pred HHHHHHHHHHhhh-CCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccccccc
Q 012426 152 NALAYATHKFFQE-NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTV 230 (464)
Q Consensus 152 s~i~~~~r~ff~~-~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~ 230 (464)
|+|++++|+||.+ +||+||+||+|+++++||+++.|.+... ..+..+||+|
T Consensus 207 s~i~~~iR~fl~~~~gFiEVeTPiL~~st~eGardf~v~~~~----------------------------~~g~~y~L~q 258 (652)
T PLN02903 207 HRVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDYLVPSRV----------------------------QPGTFYALPQ 258 (652)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCeeccCCCCCCcccEEeeec----------------------------CCCcccccCC
Confidence 9999999999997 9999999999999999998876643211 1144557999
Q ss_pred chhHHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccc
Q 012426 231 SGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFN 309 (464)
Q Consensus 231 Spql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~ 309 (464)
||||||| +|++|++|||||+||||||++++.|| ||||||||||+|+|++|+|+++|+|++++++.+.+. ++..
T Consensus 259 SPQlykQ~Lm~~G~~RvFqIa~~FR~E~~~t~Rh-pEFTqLE~E~sf~d~~dvm~~~E~li~~v~~~~~~~-----~~~~ 332 (652)
T PLN02903 259 SPQLFKQMLMVSGFDRYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTPLEDMLKLNEDLIRQVFKEIKGV-----QLPN 332 (652)
T ss_pred CHHHHHHHHHhccCCcEEEEehhhccCCCCCCcc-cceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCC-----CCCC
Confidence 9999998 57899999999999999999998888 999999999999999999999999999999887642 1123
Q ss_pred cccccchHHHHhhhhCCCCCC------------------------------------------CCHH------HHHHHHH
Q 012426 310 TWIEKGIIDRLSTVAERDFVQ------------------------------------------LSYT------DAIELLI 341 (464)
Q Consensus 310 ~~~~~~~~~~l~~~~~~~~~~------------------------------------------it~~------ea~~~l~ 341 (464)
+|.+.++.++++++.. +=|. ++-. +.++...
T Consensus 333 PF~rity~eA~~~ygs-DKPDlRf~~~l~dv~~~~~~~~f~~f~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~ 411 (652)
T PLN02903 333 PFPRLTYAEAMSKYGS-DKPDLRYGLELVDVSDVFAESSFKVFAGALESGGVVKAICVPDGKKISNNTALKKGDIYNEAI 411 (652)
T ss_pred CceEEEHHHHHHHHcC-CCCcccCCceeeEhHHhhcCCCchhhhhhhccCCeEEEEEeCCCCccchhhhcccHHHHHHHH
Confidence 4444444444433211 1111 0000 0011011
Q ss_pred hcC---CC---cc-c-CCCc--c--ccccHHH-HH-------------------------Hh-------hhhc--c---c
Q 012426 342 KAK---KK---FE-F-LVKW--G--CDLQSEH-ER-------------------------YL-------TEEA--F---G 371 (464)
Q Consensus 342 ~~~---~~---~~-~-~~~~--~--~~l~~~~-e~-------------------------~l-------~e~~--~---~ 371 (464)
+.| .. ++ . +... . ..|+.+. +. .| .+.+ . .
T Consensus 412 ~~g~~gl~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~~~GD~~~~~a~~~~~~~~~lG~lR~~l~~~l~l~~~~~ 491 (652)
T PLN02903 412 KSGAKGLAFLKVLDDGELEGIKALVESLSPEQAEQLLAACGAGPGDLILFAAGPTSSVNKTLDRLRQFIAKTLDLIDPSR 491 (652)
T ss_pred HcCCCceEEEEEcCCCCccCccchhhcCCHHHHHHHHHHhCCCCCcEEEEECCcchHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 111 11 00 0 0000 0 0011100 00 01 1111 1 1
Q ss_pred CCCeeeeeCCCC------------CcccccccCCCC-----CceeeEEEeeCCccccccCccccccHHHHHHHHHHcCCC
Q 012426 372 GCPVIVSDYPKE------------IKAFYMRQNDDG-----RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLN 434 (464)
Q Consensus 372 ~~p~fI~~yP~~------------~~pfy~~~~~d~-----~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~ 434 (464)
..++||+|||.. ..||.++..+|- -.+..|||+++|+ ||+|||+|+||++.|+++|+..|++
T Consensus 492 ~~flWV~dFPlFe~~ee~~~~~a~HHPFTap~~~d~~~l~~~~a~~YDLVlNG~-EiggGS~Rih~~~~q~~~f~~~g~~ 570 (652)
T PLN02903 492 HSILWVTDFPMFEWNEDEQRLEALHHPFTAPNPEDMGDLSSARALAYDMVYNGV-EIGGGSLRIYRRDVQQKVLEAIGLS 570 (652)
T ss_pred ceEEEEEeCCCCCccCCCCceEecCCCCCCCCCcchhhhhhhhhhcceeEecce-eeccceEecCCHHHHHHHHHHcCCC
Confidence 258999999974 479988755432 3567899999998 9999999999999999999999999
Q ss_pred cc----chHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 435 RD----SYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 435 ~~----~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
++ .+.|||+|++||+ | |+|+|+|.+||||.
T Consensus 571 ~e~~~~~F~~~l~a~~yG~PphgG~alGldRlvmll~~~~~Irdv 615 (652)
T PLN02903 571 PEEAESKFGYLLEALDMGAPPHGGIAYGLDRLVMLLAGAKSIRDV 615 (652)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCceeecHHHHHHHHcCCCchHhe
Confidence 75 5899999999998 3 99999999999984
|
|
| >COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-73 Score=578.12 Aligned_cols=392 Identities=24% Similarity=0.384 Sum_probs=318.6
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCC-c-cchhhhhcCCCCCCcEEE
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD-A-EGYDQVKSGLITTGASIW 87 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~-~-~~~~~~~~~~l~~g~~V~ 87 (464)
||++|.+|... ++|++|+++|||++.|++|+++||||||.+|. +|||++++ . ..|+.+.. |+.|++|.
T Consensus 2 Rt~~cg~l~~~------~vG~~V~L~GWV~r~Rd~GgliFiDLRDr~Gi--vQvv~~~~~~~~~~~~a~~--lr~E~vi~ 71 (585)
T COG0173 2 RTHYCGELRES------HVGQTVTLSGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPEDSPEAFEVASR--LRNEFVIQ 71 (585)
T ss_pred CceeccccCHH------HCCCEEEEEeeeeeccccCCeEEEEcccCCCe--EEEEECCccCHHHHHHHHh--cCceEEEE
Confidence 68999999984 89999999999999999999999999999997 99999984 3 35777888 99999999
Q ss_pred EEEEEEeCCC-------CCceEEEEEeeEEEEecCCCCCCCCccc---cchhhhhhcceecCCCccchhhhhHHHHHHHH
Q 012426 88 IQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNTFGAVARVRNALAYA 157 (464)
Q Consensus 88 V~G~v~~~~~-------~~~~~el~~~~i~vls~~~~~~P~~~~~---~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~ 157 (464)
|+|+|.+.+. ..+++||++++|+|||+|. .+|++..+ .+.+.+++|||||||++.++..+++||++..+
T Consensus 72 V~G~V~~R~e~~~N~~l~TGeiEv~a~~i~vln~s~-~lPf~i~d~~~~~Ee~RLkYRyLDLRR~~m~~~l~lR~kv~~~ 150 (585)
T COG0173 72 VTGTVRARPEGTINPNLPTGEIEVLAEEIEVLNASK-TLPFQIEDETNASEEIRLKYRYLDLRRPEMQKNLKLRSKVTKA 150 (585)
T ss_pred EEEEEEecCccccCCCCCcceEEEEeeeEEEEecCC-CCCcCCCCCCCcchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 9999998754 3467999999999999986 45665433 44455669999999999999999999999999
Q ss_pred HHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHH
Q 012426 158 THKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE 237 (464)
Q Consensus 158 ~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lq 237 (464)
+|+||.++||+||+||+|+.+++||+.+....++.++ +.||. |.||||+|||
T Consensus 151 iR~~ld~~gF~EiETPiLtkSTPEGARDfLVPSRv~~------------------------G~FYA----LPQSPQlfKQ 202 (585)
T COG0173 151 IRNFLDDQGFLEIETPILTKSTPEGARDFLVPSRVHP------------------------GKFYA----LPQSPQLFKQ 202 (585)
T ss_pred HHHHHhhcCCeEeecCccccCCCccccccccccccCC------------------------Cceee----cCCCHHHHHH
Confidence 9999999999999999999999999888654443332 35775 8999999999
Q ss_pred -HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccch
Q 012426 238 -TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGI 316 (464)
Q Consensus 238 -ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~ 316 (464)
||++||+|+|||++|||+|+....|. |||||||+||+|.+-+|+|+++|+|++.+++.+.+-
T Consensus 203 LLMvsGfdRYyQIarCFRDEDlRaDRQ-PEFTQiD~EmSF~~~edv~~~~E~l~~~vf~~~~~i---------------- 265 (585)
T COG0173 203 LLMVAGFDRYYQIARCFRDEDLRADRQ-PEFTQIDLEMSFVDEEDVMELIEKLLRYVFKEVKGI---------------- 265 (585)
T ss_pred HHHHhcccceeeeeeeecccccccccC-CcceeEeEEeecCCHHHHHHHHHHHHHHHHHHhcCC----------------
Confidence 58999999999999999999998999 999999999999999999999999999999987642
Q ss_pred HHHHhhhhCCCCCCCCHHHHHHHHHhcCCC------------------c---ccC-----------CCcccc--------
Q 012426 317 IDRLSTVAERDFVQLSYTDAIELLIKAKKK------------------F---EFL-----------VKWGCD-------- 356 (464)
Q Consensus 317 ~~~l~~~~~~~~~~it~~ea~~~l~~~~~~------------------~---~~~-----------~~~~~~-------- 356 (464)
.+..||+||||+||++.+...+-+ | ... +.-+..
T Consensus 266 ------~l~~pFprmtY~eAm~~YGSDKPDlRf~lel~dvt~~~~~~~F~vF~~~~~~~~~v~ai~vp~~~~~sRk~id~ 339 (585)
T COG0173 266 ------ELKTPFPRMTYAEAMRRYGSDKPDLRFPLELIDVTDLFKDSEFKVFSNALANGGRVKAIVVPGGASLSRKQIDE 339 (585)
T ss_pred ------ccCCCcccccHHHHHHHhCCCCCcccCCceehhHHHHhcCCCcceehhhhhcCCeEEEEEcCCccccCHHHHHH
Confidence 234478888888888776653110 0 000 000000
Q ss_pred ------------------------------ccHH-HHHH-------------------------h-------hhhc--c-
Q 012426 357 ------------------------------LQSE-HERY-------------------------L-------TEEA--F- 370 (464)
Q Consensus 357 ------------------------------l~~~-~e~~-------------------------l-------~e~~--~- 370 (464)
++.+ .+++ | .+.+ .
T Consensus 340 ~~~~ak~~gakGLa~ikv~~~~~~gpi~kfl~e~~~~~l~~~~~~~~gD~iff~A~~~~~~~~~lGalR~~l~~~l~li~ 419 (585)
T COG0173 340 LTEFAKIYGAKGLAYIKVEEDGLKGPIAKFLSEEILEELIERLGAEDGDIIFFVADKKKVVNKALGALRLKLGKELGLID 419 (585)
T ss_pred HHHHHHHcCCCceEEEEEecCCccchHHHhcCHHHHHHHHHHhCCCCCCEEEEecCcHHHHHHHHHHHHHHHHHHhCCCC
Confidence 0100 0100 0 0000 0
Q ss_pred --cCCCeeeeeCCCC------------CcccccccCCCC---------CceeeEEEeeCCccccccCccccccHHHHHHH
Q 012426 371 --GGCPVIVSDYPKE------------IKAFYMRQNDDG---------RTVAAMDMLVPRIGELIGGSQREERLEYLEGR 427 (464)
Q Consensus 371 --~~~p~fI~~yP~~------------~~pfy~~~~~d~---------~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r 427 (464)
.-.++||+|||.. ..||.|+...+. -.+..|||+++|+ ||+|||.|+|+++.|++-
T Consensus 420 ~~~~~f~WVvDFPlfE~~ee~~~~~a~HHPFT~P~~~~~~~l~~~p~~~~a~aYDlVlNG~-ElggGSiRIh~~eiQ~~v 498 (585)
T COG0173 420 KDQFKFLWVVDFPLFEWDEEEGRYVAAHHPFTMPKPEDLELLEADPESVRARAYDLVLNGY-ELGGGSIRIHDPEIQEKV 498 (585)
T ss_pred cccceEEEEEecCccCCccccCceecccCCCCCCCccchhhhhcCHHHhhhhhccEEeccE-eeccceeeeCCHHHHHHH
Confidence 0268999999974 479999865431 2478899999998 999999999999999999
Q ss_pred HHHcCCCcc----chHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 428 LDELKLNRD----SYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 428 ~~~~g~~~~----~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
|+..|++++ .+...|+|++||+ | |||||+|..||||.
T Consensus 499 F~~lg~~~eea~ekFGFll~Af~yGaPPHgGiA~GlDRlvmll~g~~sIReV 550 (585)
T COG0173 499 FEILGISPEEAEEKFGFLLEAFKYGAPPHGGIAFGLDRLVMLLTGAESIRDV 550 (585)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCchhhe
Confidence 999999987 6788899999998 2 99999999999983
|
|
| >PRK00476 aspS aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-72 Score=600.56 Aligned_cols=407 Identities=24% Similarity=0.334 Sum_probs=315.9
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEE
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (464)
++++|.++... .+|++|+|+|||+++|.+|+++|++|||++|. +|||++.....++.++. |+.||+|.|+
T Consensus 4 r~~~~~~l~~~------~~g~~V~l~GwV~~~R~~g~l~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~--l~~es~V~V~ 73 (588)
T PRK00476 4 RTHYCGELRES------HVGQTVTLCGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPDAEAFEVAES--LRSEYVIQVT 73 (588)
T ss_pred cceeHHHhhHH------hCCCEEEEEEEEEEEEeCCCeEEEEEEeCCce--EEEEEeCCHHHHHHHhC--CCCCCEEEEE
Confidence 78999999874 68999999999999999999999999999985 99999863334666778 9999999999
Q ss_pred EEEEeCCCC-------CceEEEEEeeEEEEecCCCCCCCCccc---cchhhhhhcceecCCCccchhhhhHHHHHHHHHH
Q 012426 90 GNVVPSQGS-------KQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNTFGAVARVRNALAYATH 159 (464)
Q Consensus 90 G~v~~~~~~-------~~~~el~~~~i~vls~~~~~~P~~~~~---~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r 159 (464)
|+|.+++.+ .+++||.+++++|||+|. ++|++... .+.+.++++||||+|++.++++|++||++++++|
T Consensus 74 G~v~~~~~~~~n~~~~~g~~El~~~~i~il~~a~-~lP~~~~~~~~~~~~~Rl~~R~LdlR~~~~~~~l~~Rs~i~~~iR 152 (588)
T PRK00476 74 GTVRARPEGTVNPNLPTGEIEVLASELEVLNKSK-TLPFPIDDEEDVSEELRLKYRYLDLRRPEMQKNLKLRSKVTSAIR 152 (588)
T ss_pred EEEEecCCcccCccCCCCcEEEEEeEEEEEecCC-CCCCcccccccCChhhhhhcceEeecCHHHHHHHHHHHHHHHHHH
Confidence 999987532 456999999999999997 67776422 3455556999999999999999999999999999
Q ss_pred HHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHH-H
Q 012426 160 KFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-T 238 (464)
Q Consensus 160 ~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lq-l 238 (464)
+||.++||+||+||+|+++++||+++ |.+.. + .+.+..+||+|||||||| +
T Consensus 153 ~ff~~~gFiEV~TP~L~~s~~ega~~-f~v~~-~--------------------------~~~~~~~~L~qSpql~kq~l 204 (588)
T PRK00476 153 NFLDDNGFLEIETPILTKSTPEGARD-YLVPS-R--------------------------VHPGKFYALPQSPQLFKQLL 204 (588)
T ss_pred HHHHHCCCEEEECCeeecCCCCCCcc-ceecc-c--------------------------ccCCceeecCCCHHHHHHHH
Confidence 99999999999999999999998765 75521 1 134555689999999998 5
Q ss_pred HhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHH
Q 012426 239 YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIID 318 (464)
Q Consensus 239 l~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~ 318 (464)
+++|++||||||||||||+++++||+ ||||||||++|+|++|+|+++|+||+++++.+.+. ++..+|.+.++.+
T Consensus 205 ~~~g~~rvfqi~~~FR~E~~~~~r~~-EFt~le~e~af~~~~dvm~~~E~li~~i~~~~~~~-----~~~~pf~r~ty~e 278 (588)
T PRK00476 205 MVAGFDRYYQIARCFRDEDLRADRQP-EFTQIDIEMSFVTQEDVMALMEGLIRHVFKEVLGV-----DLPTPFPRMTYAE 278 (588)
T ss_pred HhcccCceEEEeceeecCCCCCCcCc-ccccceeeecCCCHHHHHHHHHHHHHHHHHHHhCc-----cCCCCceEEEHHH
Confidence 78999999999999999999998887 99999999999999999999999999999988642 2234566667777
Q ss_pred HHhhhhCCCCCCCCH----------------------------------------------HHHHHHHHhcCCC------
Q 012426 319 RLSTVAERDFVQLSY----------------------------------------------TDAIELLIKAKKK------ 346 (464)
Q Consensus 319 ~l~~~~~~~~~~it~----------------------------------------------~ea~~~l~~~~~~------ 346 (464)
+++.+ |.+-|.+.| ++..++.+..|.+
T Consensus 279 a~~~y-g~dkPDlR~~~eI~DVT~if~~s~f~vf~~~l~~gg~VkaI~vp~~~~~~~rk~id~L~e~AK~~gakGL~~i~ 357 (588)
T PRK00476 279 AMRRY-GSDKPDLRFGLELVDVTDLFKDSGFKVFAGAANDGGRVKAIRVPGGAAQLSRKQIDELTEFAKIYGAKGLAYIK 357 (588)
T ss_pred HHHHH-CCCCCcccCCceehhHHHHhccCCchhhhhhhccCCeEEEEEecCCCCccchhHHHHHHHHHHHcCCCceEEEE
Confidence 66543 433332211 1111111111100
Q ss_pred cccCCCcc----ccccHH-HH-------------------------HHh-------hhhc-----ccCCCeeeeeCCCC-
Q 012426 347 FEFLVKWG----CDLQSE-HE-------------------------RYL-------TEEA-----FGGCPVIVSDYPKE- 383 (464)
Q Consensus 347 ~~~~~~~~----~~l~~~-~e-------------------------~~l-------~e~~-----~~~~p~fI~~yP~~- 383 (464)
+... .+. .-++.+ .+ +.| .+.+ ..-.++||+|||..
T Consensus 358 ~~~~-~l~~~~akflsee~~~~L~e~l~~k~GDll~~~A~~~~~v~~aLG~LR~~L~~~~~~~~~~~~~f~Wv~dfPlf~ 436 (588)
T PRK00476 358 VNED-GLKGPIAKFLSEEELAALLERTGAKDGDLIFFGADKAKVVNDALGALRLKLGKELGLIDEDKFAFLWVVDFPMFE 436 (588)
T ss_pred EcCC-CCcCchhhcCCHHHHHHHHHHhCCCCCCEEEEECCchHHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCCCC
Confidence 0000 010 001110 00 001 1100 11258999999974
Q ss_pred -----------CcccccccCC--------CC--CceeeEEEeeCCccccccCccccccHHHHHHHHHHcCCCcc----ch
Q 012426 384 -----------IKAFYMRQND--------DG--RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SY 438 (464)
Q Consensus 384 -----------~~pfy~~~~~--------d~--~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~----~~ 438 (464)
..||.|+..+ || -.+.+|||+++|+ ||+|||+|+||++.|+++|+..|++++ .+
T Consensus 437 ~~~~~~~~~~~HhpFT~p~~~d~~~l~~~~p~~~~a~~~dlv~ng~-E~~~gs~ri~~~~~q~~~~~~~~~~~~~~~~~~ 515 (588)
T PRK00476 437 YDEEEGRWVAAHHPFTMPKDEDLDELETTDPGKARAYAYDLVLNGY-ELGGGSIRIHRPEIQEKVFEILGISEEEAEEKF 515 (588)
T ss_pred ccCCCCeeeeecCCCCCcCccChhHhhcCCHHHhhhheeeeEEeee-eeccceEEeCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4799987554 22 3578999999998 999999999999999999999999886 68
Q ss_pred HHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 439 WWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 439 ~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
.|||+|++||+ | |||+|+|.+||||+
T Consensus 516 ~~~~~a~~~g~pph~g~~~G~dr~~~~~~~~~~irdv 552 (588)
T PRK00476 516 GFLLDALKYGAPPHGGIAFGLDRLVMLLAGADSIRDV 552 (588)
T ss_pred HHHHHHHhcCCCCCcceeccHHHHHHHHcCCccHHhe
Confidence 99999999998 2 99999999999985
|
|
| >cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-72 Score=565.68 Aligned_cols=300 Identities=43% Similarity=0.744 Sum_probs=268.7
Q ss_pred cchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCC
Q 012426 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVD 205 (464)
Q Consensus 126 ~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~ 205 (464)
+++++++++||||+|++..++++++||.|++++|+||.++||+||+||+|++++||+++++|++
T Consensus 2 ~~~~~~~~~r~l~lr~~~~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~e~~~~~f~~---------------- 65 (322)
T cd00776 2 ANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFKV---------------- 65 (322)
T ss_pred CChHhhhhCceeeeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCCCccCCcccc----------------
Confidence 4678899999999999999999999999999999999999999999999999999999999965
Q ss_pred CCCCCCCCCccccccccCcccccccchhHHHHHHhhccCceEEEccccccCCCCCccccccchhccceeccC-CHHHHHH
Q 012426 206 AIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMA 284 (464)
Q Consensus 206 ~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-~~~dlm~ 284 (464)
+||++++||++|||||||++++|++|||+||||||||+++|.||||||||||||++|+ |++|+|+
T Consensus 66 --------------~~~~~~~yL~~Spql~lk~l~~~~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~ 131 (322)
T cd00776 66 --------------SYFGKPAYLAQSPQLYKEMLIAALERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMD 131 (322)
T ss_pred --------------ccCCCcceecCCHHHHHHHHHHhhhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHH
Confidence 5899999999999999987666699999999999999999999999999999999999 8999999
Q ss_pred HHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHH
Q 012426 285 CATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERY 364 (464)
Q Consensus 285 ~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~ 364 (464)
++|+||++++..+.+++..++.+++. .......+..||++|||.||++++++.+.. .+..||.+++.++|++
T Consensus 132 ~~e~ll~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~rit~~eA~~~l~~~~~~--~~~~~~~~l~~~~e~~ 203 (322)
T cd00776 132 LIEELIKYIFKRVLERCAKELELVNQ------LNRELLKPLEPFPRITYDEAIELLREKGVE--EEVKWGEDLSTEHERL 203 (322)
T ss_pred HHHHHHHHHHHHHHhccHHHHhhhhc------cCcccccCCCCceEEEHHHHHHHHHHcCCC--CCCCccchhcHHHHHH
Confidence 99999999999999888777654310 001111235689999999999999988753 2357899999999999
Q ss_pred hhhhcccCCCeeeeeCCCCCcccccccCC-CCCceeeEEEeeCCccccccCccccccHHHHHHHHHHcCCCccchHHHHH
Q 012426 365 LTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLD 443 (464)
Q Consensus 365 l~e~~~~~~p~fI~~yP~~~~pfy~~~~~-d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~ 443 (464)
|++.+.+ +|+||+|||..++|||++.++ ++++++|||||++|++||+|||+|++|+++|++||+++|+++..++|||+
T Consensus 204 l~~~~~~-~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~~El~~g~~r~~d~~~l~~r~~~~g~~~~~~~~yl~ 282 (322)
T cd00776 204 LGEIVKG-DPVFVTDYPKEIKPFYMKPDDDNPETVESFDLLMPGVGEIVGGSQRIHDYDELEERIKEHGLDPESFEWYLD 282 (322)
T ss_pred HHHHhCC-CcEEEECCccccCCceeeecCCCCCeeEEEEEEcCCCeEEeeceeecCCHHHHHHHHHHcCCChHHHHHHHH
Confidence 9876534 899999999999999986654 56899999999999669999999999999999999999999999999999
Q ss_pred Hhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 444 LRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 444 ~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
|++||+ | |+|+++|.+|||||
T Consensus 283 a~~~G~pp~~G~giGidRL~m~~~g~~~Irdv 314 (322)
T cd00776 283 LRKYGMPPHGGFGLGLERLVMWLLGLDNIREA 314 (322)
T ss_pred HHHCCCCCCceeeEhHHHHHHHHcCCCchheE
Confidence 999988 3 99999999999986
|
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-71 Score=592.79 Aligned_cols=407 Identities=19% Similarity=0.270 Sum_probs=303.6
Q ss_pred ccceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc---cchhhhhcCCCCCCcE
Q 012426 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGAS 85 (464)
Q Consensus 9 ~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~---~~~~~~~~~~l~~g~~ 85 (464)
.|+++|.+|... ..|++|+|+|||+++|++|+++|++|||++|. +|||++++. ..++.++. |+.||+
T Consensus 4 ~r~~~cg~l~~~------~~g~~V~l~GWV~~~R~~G~l~FidLRD~~G~--iQvV~~~~~~~~~~~~~~~~--L~~Esv 73 (706)
T PRK12820 4 NDRSFCGHLSLD------DTGREVCLAGWVDAFRDHGELLFIHLRDRNGF--IQAVFSPEAAPADVYELAAS--LRAEFC 73 (706)
T ss_pred ccccccccCChh------hCCCEEEEEEEEEEEEcCCCcEEEEEEeCCcc--EEEEEeCCcCCHHHHHHHhc--CCCCCE
Confidence 478999999984 78999999999999999999999999999985 999998653 23555777 999999
Q ss_pred EEEEEEEEeCCC-------CCceEEEEEeeEEEEecCCCCCCCC--ccc------------cchhhhhhcceecCCCccc
Q 012426 86 IWIQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQ--KKR------------VSREFLRTKAHLRPRTNTF 144 (464)
Q Consensus 86 V~V~G~v~~~~~-------~~~~~el~~~~i~vls~~~~~~P~~--~~~------------~~~~~~r~~r~l~~R~~~~ 144 (464)
|.|+|+|.+++. ..+++||.+++++||++|. .+|++ .+. .+.+.+.++||||+|++.+
T Consensus 74 V~V~G~v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~-~lP~~i~~~~~~~~~~~~~~~~~~e~~Rl~~RyLDLR~~~~ 152 (706)
T PRK12820 74 VALQGEVQKRLEETENPHIETGDIEVFVRELSILAASE-ALPFAISDKAMTAGAGSAGADAVNEDLRLQYRYLDIRRPAM 152 (706)
T ss_pred EEEEeEEeccCccccCCCCCCCcEEEEeeEEEEEecCC-CCCCCCcccccccccccccccccCHhhhhhCceeecCCHHH
Confidence 999999988531 2366999999999999996 45554 331 1344455899999999999
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCc
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 224 (464)
+++|++||++++++|+||.++||+||+||+|+++++||+++.+... .++..
T Consensus 153 ~~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~eGAr~~~~p~-----------------------------~~~~~ 203 (706)
T PRK12820 153 QDHLAKRHRIIKCARDFLDSRGFLEIETPILTKSTPEGARDYLVPS-----------------------------RIHPK 203 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCCCCCcceEEee-----------------------------ecCCC
Confidence 9999999999999999999999999999999999999887754221 12333
Q ss_pred cc-ccccchhHHHHH-HhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCc
Q 012426 225 PA-FLTVSGQLNAET-YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK 302 (464)
Q Consensus 225 ~~-yL~~Spql~lql-l~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~ 302 (464)
.+ +|+||||||||+ |++|++|||||+||||||++++.|| ||||||||||+|+|++|+|+++|+||+++++ +..
T Consensus 204 ~~y~L~qSPQlykq~lm~~G~~rvfqI~~~FR~E~~~t~r~-pEFT~LE~E~af~d~~dvm~l~E~li~~v~~-~~~--- 278 (706)
T PRK12820 204 EFYALPQSPQLFKQLLMIAGFERYFQLARCFRDEDLRPNRQ-PEFTQLDIEASFIDEEFIFELIEELTARMFA-IGG--- 278 (706)
T ss_pred cceecCCCHHHHHHHHHhccCCcEEEEechhcCCCCCCCcC-ccccccceeeccCCHHHHHHHHHHHHHHHHH-hcC---
Confidence 33 499999999985 6899999999999999999998777 9999999999999999999999999999986 211
Q ss_pred ccccccccccccchHHHHhhhhCCCCCC-------------------------------------------CCH---HHH
Q 012426 303 EDMDFFNTWIEKGIIDRLSTVAERDFVQ-------------------------------------------LSY---TDA 336 (464)
Q Consensus 303 ~~i~~~~~~~~~~~~~~l~~~~~~~~~~-------------------------------------------it~---~ea 336 (464)
+++..+|.+.++.++++.+ |.+=|. ++- +++
T Consensus 279 --~~~~~pf~r~ty~eA~~~y-G~DKPDlR~~~~l~d~~~~~~~~~f~~f~~~~~~~g~v~~i~~~~~~~~~s~~~~~~~ 355 (706)
T PRK12820 279 --IALPRPFPRMPYAEAMDTT-GSDRPDLRFDLKFADATDIFENTRYGIFKQILQRGGRIKGINIKGQSEKLSKNVLQNE 355 (706)
T ss_pred --cCCCCCceEEEHHHHHHHh-CCCCCccccCcEEEEHHHHhccCCchhhhhhhccCCeEEEEEeCCCccccCHHHHHHH
Confidence 1222345454555544332 211111 111 110
Q ss_pred H--HHHHhcC---CC--------cccC------------------CCccccc----c---HHHHHHhh-------hhc--
Q 012426 337 I--ELLIKAK---KK--------FEFL------------------VKWGCDL----Q---SEHERYLT-------EEA-- 369 (464)
Q Consensus 337 ~--~~l~~~~---~~--------~~~~------------------~~~~~~l----~---~~~e~~l~-------e~~-- 369 (464)
+ +..+..| .. +..+ .+.|+.+ . ......|+ +.+
T Consensus 356 ~~~~~~~~~g~~gl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~~LG~lR~~l~~~~~l 435 (706)
T PRK12820 356 YAKEIAPSFGAKGMTWMRAEAGGLDSNIVQFFSADEKEALKRRFHAEDGDVIIMIADASCAIVLSALGQLRLHLADRLGL 435 (706)
T ss_pred HHHHHHHHcCCCceEEEEECCCCcCCchhccCCHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHHHHHcCC
Confidence 1 1111111 00 0000 0011100 0 00000111 100
Q ss_pred c---cCCCeeeeeCCCC-----------CcccccccCCC--------C--CceeeEEEeeCCccccccCccccccHHHHH
Q 012426 370 F---GGCPVIVSDYPKE-----------IKAFYMRQNDD--------G--RTVAAMDMLVPRIGELIGGSQREERLEYLE 425 (464)
Q Consensus 370 ~---~~~p~fI~~yP~~-----------~~pfy~~~~~d--------~--~~~~~fdl~~~GigEi~~G~~r~~d~~~l~ 425 (464)
. .-.++||+|||.. ..||.++..+| + -.+..|||+++|+ ||+|||.|+||++.|+
T Consensus 436 ~~~~~~~flWV~dFPlfe~~~e~~~~a~HHPFT~p~~~d~~~l~~~~p~~~~~~~YDLV~nG~-E~ggGs~Rih~~~~q~ 514 (706)
T PRK12820 436 IPEGVFHPLWITDFPLFEATDDGGVTSSHHPFTAPDREDFDPGDIEELLDLRSRAYDLVVNGE-ELGGGSIRINDKDIQL 514 (706)
T ss_pred CCCCCceEEEEEeCCcccCCCCCCeeeeeCCCCCcCccChhhhccCChHHhhhheeeEEecce-eeccceEEeCCHHHHH
Confidence 0 1258899999984 48999875442 2 1467999999997 9999999999999999
Q ss_pred HHHHHcCCCcc----chHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 426 GRLDELKLNRD----SYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 426 ~r~~~~g~~~~----~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
+.|+..|++++ .+.+||+|++||+ | |||+|+|.+||||+
T Consensus 515 ~~f~~lg~~~~~~~~~Fgf~l~a~~~G~pphgG~a~G~dRlvm~l~~~~sirdv 568 (706)
T PRK12820 515 RIFAALGLSEEDIEDKFGFFLRAFDFAAPPHGGIALGLDRVVSMILQTPSIREV 568 (706)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCceeccHHHHHHHHcCCccHHHh
Confidence 99999999875 4679999999999 2 99999999999985
|
|
| >PRK06462 asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-69 Score=542.99 Aligned_cols=297 Identities=25% Similarity=0.407 Sum_probs=262.3
Q ss_pred cchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCC----CCceeeecCCCcccccC
Q 012426 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAG----EQFCVTTLIPSSREAAE 201 (464)
Q Consensus 126 ~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~----~~F~vt~~~~~~~~~~~ 201 (464)
.+.+++.++|++++|++..+++|++||+|++++|+||.++||+||+||+|+++++++.+ .+|.+.
T Consensus 8 ~~~~~~~~~r~~~lr~~~~~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~----------- 76 (335)
T PRK06462 8 KEYEEFLRMSWKHISSEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQI----------- 76 (335)
T ss_pred cchhhhhhhHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccccCCcccc-----------
Confidence 35677889999999999999999999999999999999999999999999998776432 234221
Q ss_pred CCCCCCCCCCCCCccccccccCcccccccchhHHHHHHhhccCceEEEccccccCCCCC--ccccccchhccceeccCCH
Q 012426 202 SPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADL 279 (464)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~rVfeI~~~FR~E~~~t--~rHl~EFtmlE~e~a~~~~ 279 (464)
..+||++++||++|||||||++++|++|||+||||||||++++ +||||||||||||++|+|+
T Consensus 77 ----------------~~~~~~~~~yL~~Spql~k~ll~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~ 140 (335)
T PRK06462 77 ----------------SIDFYGVEYYLADSMILHKQLALRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADL 140 (335)
T ss_pred ----------------ccccCCCceeeccCHHHHHHHHHhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCH
Confidence 1268999999999999999999999999999999999999986 6999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccH
Q 012426 280 KDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQS 359 (464)
Q Consensus 280 ~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~ 359 (464)
+|+|+++|+||+++++.+.+++++++.+.+... ..+..||++|||.||+++|++.+.+. .++++++.
T Consensus 141 ~dlm~~~e~lv~~i~~~~~~~~~~~i~~~~~~~---------~~~~~p~~rit~~eA~~~l~~~~~~~----~~~~~l~~ 207 (335)
T PRK06462 141 DEVMDLIEDLIKYLVKELLEEHEDELEFFGRDL---------PHLKRPFKRITHKEAVEILNEEGCRG----IDLEELGS 207 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCcc---------ccCCCCCeEEEHHHHHHHHHhcCCCc----chHHHHhH
Confidence 999999999999999999998887776654311 01246899999999999999877642 34778999
Q ss_pred HHHHHhhhhcccCCCeeeeeCCCCCcccccccC-CCCCceeeEEEeeC-CccccccCccccccHHHHHHHHHHcCCCccc
Q 012426 360 EHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRDS 437 (464)
Q Consensus 360 ~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~-~d~~~~~~fdl~~~-GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~ 437 (464)
++|++|.+.+ . +||||||||..++|||++.+ +++++++|||||+| |+|||++|++|+|+++++.++++++|++++.
T Consensus 208 ~~E~~l~~~~-~-~p~fi~~yP~~~~pfy~~~~~~~~~~~~rFdL~~~~g~gEl~~g~er~~~~~~l~~~~~~~g~~~~~ 285 (335)
T PRK06462 208 EGEKSLSEHF-E-EPFWIIDIPKGSREFYDREDPERPGVLRNYDLLLPEGYGEAVSGGEREYEYEEIVERIREHGVDPEK 285 (335)
T ss_pred HHHHHHHHHh-C-CCEEEECCChhhCCcccccCCCCCCEEEEEEEEeeCCCcEEeeeEEEecCHHHHHHHHHHcCCChHH
Confidence 9999987654 4 79999999999999998754 56789999999998 7899999999999999999999999999999
Q ss_pred hHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 438 YWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 438 ~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
++|||+|++||+ | |+|+++|.+|||||
T Consensus 286 ~~~yl~a~~~G~pp~~G~glGidRLvm~~~g~~~Irdv 323 (335)
T PRK06462 286 YKWYLEMAKEGPLPSAGFGIGVERLTRYICGLRHIREV 323 (335)
T ss_pred HHHHHHHHHCCCCCCCeEEEcHHHHHHHHcCCCchhee
Confidence 999999999988 3 99999999999997
|
|
| >PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-69 Score=548.29 Aligned_cols=296 Identities=37% Similarity=0.624 Sum_probs=247.0
Q ss_pred hhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCC
Q 012426 128 REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAI 207 (464)
Q Consensus 128 ~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~ 207 (464)
.++++++||||+|++..+++|++||+|++++|+||.++||+||+||+|++++++|++++|.+....
T Consensus 2 ~e~~~~~r~l~~r~~~~~~~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~-------------- 67 (335)
T PF00152_consen 2 EETRLDNRHLDLRTPAMSSILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSEP-------------- 67 (335)
T ss_dssp HHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEEST--------------
T ss_pred hhhhhhccceeccCcHHHHHHHHHHHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccch--------------
Confidence 478899999999999999999999999999999999999999999999999999999999875311
Q ss_pred CCCCCCCccccccccCcccccccchhHHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHH
Q 012426 208 PKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACA 286 (464)
Q Consensus 208 ~~~~~~~~~~~~~~f~~~~yL~~Spql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~ 286 (464)
.+||++++||++||||||| ++++|++|||+||||||||+++|.||||||||||||++|+|++++|+++
T Consensus 68 -----------~~~~~~~~~L~~Spql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~lm~~~ 136 (335)
T PF00152_consen 68 -----------GKYFGEPAYLTQSPQLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDDLMDLI 136 (335)
T ss_dssp -----------TEETTEEEEE-SSSHHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHHHHHHH
T ss_pred -----------hhhcccceecCcChHHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccCcHHHhHHHH
Confidence 3689999999999999998 5677799999999999999998999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCccc-------------CCCc
Q 012426 287 TAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF-------------LVKW 353 (464)
Q Consensus 287 e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~-------------~~~~ 353 (464)
|+||+++++.+.++.... .. .-....+|++++|.||++.+...+.+... ...+
T Consensus 137 e~li~~i~~~~~~~~~~~-~~-------------~~~~~~~f~ri~~~ea~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 202 (335)
T PF00152_consen 137 EELIKYIFKELLENAKEL-SL-------------NIDLPKPFPRITYEEAFEIYGGDKPDLRFDEELDDLAEIEELEFEV 202 (335)
T ss_dssp HHHHHHHHHHHHHHHHHH-HT-------------CEESSSS-EEEEHHHHHHHHHHTTTTTTTCHHHHHHHHHHHTTHHC
T ss_pred HHHHHHHHHHHhccCccc-cc-------------cccccCCceEeeehHHHHHhhcccccchhHHHHHHHHHHhcccchH
Confidence 999999999987541110 00 01223468888999998888876533221 1123
Q ss_pred cccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccCCCC-CceeeEEEeeCCccccccCccccccHHHHHHHHHHcC
Q 012426 354 GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG-RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELK 432 (464)
Q Consensus 354 ~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~~d~-~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g 432 (464)
|.++..++|+.|++.... +|+||+|||..++|||++.++++ ++++|||||++| +||||||+|+||+++|++||++.+
T Consensus 203 ~~~l~~~~e~~L~~~~~~-~p~fI~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~g-~Ei~~G~~r~~d~~~l~~r~~~~~ 280 (335)
T PF00152_consen 203 GRLLSEEVEPYLVEKYFT-DPVFITDYPAEQSPFYKPPNDDDPGVAERFDLYIPG-GEIANGSQREHDPEELRERFEEQG 280 (335)
T ss_dssp HHHHHHHHHHHHHHHHSS-SEEEEEEEBGGGSTTTBBBSSSTTTBBSEEEEEETT-EEEEEEEEB--SHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhcccC-CcEEEEecccccCcccccccccccccccceeEEEeC-EEEehHHhhhhHHHHHHHHhhhcc
Confidence 667888999988765555 89999999999999999988876 899999999999 599999999999999999999999
Q ss_pred CCccc----hHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 433 LNRDS----YWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 433 ~~~~~----~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
++++. ++|||+|++||+ | |+|+++|.+|||||
T Consensus 281 ~~~~~~~~~~~~yl~~~~~G~pp~~G~glG~eRLvm~l~g~~~Irdv 327 (335)
T PF00152_consen 281 IDPEEEMPIDEWYLEALKYGMPPHGGFGLGLERLVMLLLGLKNIRDV 327 (335)
T ss_dssp HHGGGSHHHGHHHHHHHHTT--SEEEEEEEHHHHHHHHHT-SSGGGG
T ss_pred cccccccchhHhHHHhhhccCcccCcceehHHHHHHHHcCCCcHHhe
Confidence 98887 999999999998 3 99999999999997
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B .... |
| >TIGR00462 genX lysyl-tRNA synthetase-like protein GenX | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-63 Score=494.33 Aligned_cols=276 Identities=21% Similarity=0.257 Sum_probs=243.4
Q ss_pred hhHHHHHHHHHHHHhhhCCcEEEeCceEeec-CCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccc
Q 012426 148 ARVRNALAYATHKFFQENGFIWISSPIITAS-DCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPA 226 (464)
Q Consensus 148 ~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~-~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 226 (464)
+++||.+++++|+||.++||+||+||+|+++ .+++++++|++...++ +++++++
T Consensus 1 l~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y~~~-------------------------~~~~~~~ 55 (304)
T TIGR00462 1 LRARARLLAAIRAFFAERGVLEVETPLLSPAPVTDPHLDAFATEFLGP-------------------------DGEGRPL 55 (304)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCCcCCcceeeeccCC-------------------------CCCCcce
Confidence 5799999999999999999999999999998 5788999997632211 3567899
Q ss_pred ccccchhHHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccc
Q 012426 227 FLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDM 305 (464)
Q Consensus 227 yL~~Spql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i 305 (464)
||+|||||||| ++++|++|||+||||||||+++ +||||||||||||++|.|++|+|+++|+||+++++.+
T Consensus 56 yL~~Spql~lk~ll~~g~~rVfeigp~FRaE~~~-~rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~i~~~~-------- 126 (304)
T TIGR00462 56 YLQTSPEYAMKRLLAAGSGPIFQICKVFRNGERG-RRHNPEFTMLEWYRPGFDYHDLMDEVEALLQELLGDP-------- 126 (304)
T ss_pred eeecCHHHHHHHHHhccCCCEEEEcCceeCCCCC-CCcccHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHhc--------
Confidence 99999999997 7889999999999999999994 8999999999999999999999999999999998752
Q ss_pred cccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhh---hcc-cCCCeeeeeCC
Q 012426 306 DFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAF-GGCPVIVSDYP 381 (464)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e---~~~-~~~p~fI~~yP 381 (464)
..+|.+.++.+++++.++.++...+.+++.+++++.|+.+ .++.+++.++|+++++ +.+ .++|+||||||
T Consensus 127 --~~~~~~it~~ea~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~d~~~~~e~~l~~~ie~~~~~~~p~fi~~yP 200 (304)
T TIGR00462 127 --FAPWERLSYQEAFLRYAGIDPLTASLDELAAAAAAHGVRA----SEEDDRDDLLDLLFSEKVEPHLGFGRPTFLYDYP 200 (304)
T ss_pred --CCCcEEEEHHHHHHHHhCCCcccCCHHHHHHHHHHcCCCC----CCCCChhHHHHHHHHHHHHHhcCCCCCEEEEcCc
Confidence 2467778899999999999988899999999999888653 4567888888888753 333 23799999999
Q ss_pred CCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHH-------cCCCccch-HHHHHHhhhhh----
Q 012426 382 KEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-------LKLNRDSY-WWYLDLRHYGS---- 449 (464)
Q Consensus 382 ~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~-------~g~~~~~~-~~yl~~~~~G~---- 449 (464)
..++|||+..++++++++|||||++|+ ||+|||+|++|+++|++|+++ .|+++..+ +|||++++||+
T Consensus 201 ~~~~~~~~~~~~~~~~~~rfdl~~~G~-Ei~~G~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~yl~~~~~G~pP~~ 279 (304)
T TIGR00462 201 ASQAALARISPDDPRVAERFELYIKGL-ELANGFHELTDAAEQRRRFEADNAERKALGLPRYPLDERFLAALEAGLPECS 279 (304)
T ss_pred cccCcCccccCCCCCeeEEEEEEECCE-EEeeceeecCCHHHHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHcCCCCCC
Confidence 999999987777889999999999997 999999999999999999975 78998888 68999999988
Q ss_pred ----h---HhhhhcCCCCCCCC
Q 012426 450 ----G---LVFILIKVTNFLNC 464 (464)
Q Consensus 450 ----g---L~mll~~~~~I~~~ 464 (464)
| |+|+++|.+|||||
T Consensus 280 G~GiGieRL~m~l~g~~~Ir~v 301 (304)
T TIGR00462 280 GVALGVDRLLMLALGADSIDDV 301 (304)
T ss_pred ceEEcHHHHHHHHhCCCchhhc
Confidence 3 99999999999996
|
Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown. |
| >cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-62 Score=489.99 Aligned_cols=279 Identities=19% Similarity=0.266 Sum_probs=232.0
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccc
Q 012426 142 NTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (464)
Q Consensus 142 ~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (464)
+.++++|++||++++++|+||.++||+||+||+|+++++++++++|.+. .+|
T Consensus 2 ~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~~----------------------------~~~ 53 (329)
T cd00775 2 EEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITH----------------------------HNA 53 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCCccceeEEec----------------------------cCC
Confidence 4678899999999999999999999999999999998888888999542 147
Q ss_pred cCcccccccchhHHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhc
Q 012426 222 FEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 300 (464)
Q Consensus 222 f~~~~yL~~Spql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~ 300 (464)
|++++||+|||||||| ++++|++|||+||||||||+++ +||||||||||||++|++++|+|+++|++|+++++.+.+.
T Consensus 54 ~~~~~yL~~Spql~~k~ll~~g~~~vf~i~~~FR~E~~~-~rHl~EFt~le~e~~~~~~~~~m~~~e~li~~i~~~~~~~ 132 (329)
T cd00775 54 LDMDLYLRIAPELYLKRLIVGGFERVYEIGRNFRNEGID-LTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGK 132 (329)
T ss_pred CCcceeeccCHHHHHHHHHhcCCCcEEEEeccccCCCCC-CCCCCceEEEEEeeecCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 8999999999999996 5678999999999999999995 8999999999999999999999999999999999988765
Q ss_pred CcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhc---------------------CCCcccCCCccccccH
Q 012426 301 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA---------------------KKKFEFLVKWGCDLQS 359 (464)
Q Consensus 301 ~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~---------------------~~~~~~~~~~~~~l~~ 359 (464)
+ ++.+.+.. .....||+++||.||++.+... +.++..+..|+..++.
T Consensus 133 ~--~~~~~~~~----------~~~~~pf~rity~eA~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 200 (329)
T cd00775 133 T--KIEYGGKE----------LDFTPPFKRVTMVDALKEKTGIDFPELDLEQPEELAKLLAKLIKEKIEKPRTLGKLLDK 200 (329)
T ss_pred c--eeecCCcc----------ccCCCCceEEEHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHH
Confidence 3 33332210 0113477888888887765321 1111122356767777
Q ss_pred HHHHHhhhhcccCCCeeeeeCCCCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHc------CC
Q 012426 360 EHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KL 433 (464)
Q Consensus 360 ~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~------g~ 433 (464)
.+++++.+. ++ +|+||+|||+.++||||..++|+++++|||||++|+ ||+|||+|++|+++|++||++. +.
T Consensus 201 l~~~~ve~~-~~-~p~fi~~yP~~~~~f~~~~~~~~~~~~rfdl~~~G~-Ei~~G~~el~d~~e~~~r~~~~~~~~~~~~ 277 (329)
T cd00775 201 LFEEFVEPT-LI-QPTFIIDHPVEISPLAKRHRSNPGLTERFELFICGK-EIANAYTELNDPFDQRERFEEQAKQKEAGD 277 (329)
T ss_pred HHHHHhccc-cC-CCEEEECCChHhCcCcCcCCCCCCeeEEEEeEECCE-EEEcccchhCCHHHHHHHHHHHHHHHHcCC
Confidence 888876554 44 799999999999999998777889999999999998 9999999999999999999763 66
Q ss_pred Cccc--hHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 434 NRDS--YWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 434 ~~~~--~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
++.. ++|||++++||+ | |+|+++|.+||+||
T Consensus 278 ~~~~~~~~~yl~a~~~G~pp~~G~glGleRL~m~~~g~~~Irdv 321 (329)
T cd00775 278 DEAMMMDEDFVTALEYGMPPTGGLGIGIDRLVMLLTDSNSIRDV 321 (329)
T ss_pred CccccchHHHHHHHHCCCCCCCcEEecHHHHHHHHcCCCcHHhc
Confidence 6543 589999999998 3 99999999999986
|
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-59 Score=459.51 Aligned_cols=242 Identities=24% Similarity=0.416 Sum_probs=217.1
Q ss_pred hhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc--Ccc
Q 012426 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF--EKP 225 (464)
Q Consensus 148 ~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f--~~~ 225 (464)
|++||++++++|+||.++||+||+||+|+++++|+++++|.+. |+ +++
T Consensus 1 ~~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~------------------------------~~~~g~~ 50 (269)
T cd00669 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVK------------------------------YNALGLD 50 (269)
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEee------------------------------ecCCCCc
Confidence 5899999999999999999999999999999999999999762 34 899
Q ss_pred cccccchhHHHHH-HhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCccc
Q 012426 226 AFLTVSGQLNAET-YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKED 304 (464)
Q Consensus 226 ~yL~~Spql~lql-l~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~ 304 (464)
+||++|||+|+|+ +++|++|||+|+||||+|.. +.||++||||||||++|.|++|+|+++|+||+++++.+.+.+..+
T Consensus 51 ~~L~~Spql~~~~~~~~~~~~vf~i~~~fR~e~~-~~~hl~EF~~le~e~~~~~~~dvm~~~e~lv~~i~~~~~~~~~~~ 129 (269)
T cd00669 51 YYLRISPQLFKKRLMVGGLDRVFEINRNFRNEDL-RARHQPEFTMMDLEMAFADYEDVIELTERLVRHLAREVLGVTAVT 129 (269)
T ss_pred EEeecCHHHHHHHHHhcCCCcEEEEecceeCCCC-CCCcccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999975 67899999999999999955 799999999999999999999999999999999999998876655
Q ss_pred ccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCC
Q 012426 305 MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEI 384 (464)
Q Consensus 305 i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~ 384 (464)
+.... ..+..||++|||+||++.+. +|+||+|||..+
T Consensus 130 ~~~~~------------~~~~~~~~rit~~ea~~~~~-------------------------------~p~fi~d~P~~~ 166 (269)
T cd00669 130 YGFEL------------EDFGLPFPRLTYREALERYG-------------------------------QPLFLTDYPAEM 166 (269)
T ss_pred ccccc------------cccCCCceEeeHHHHHHHhC-------------------------------CceEEECCCccc
Confidence 43210 12346899999999988652 599999999999
Q ss_pred cccccccCC-CCCceeeEEEeeCCccccccCccccccHHHHHHHHHHcCCCcc----chHHHHHHhhhhh--------h-
Q 012426 385 KAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWWYLDLRHYGS--------G- 450 (464)
Q Consensus 385 ~pfy~~~~~-d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~----~~~~yl~~~~~G~--------g- 450 (464)
+|||++.++ ++++++|||||++|+ ||+|||+|+||+++|++||+++|++++ .++|||+|++||+ |
T Consensus 167 ~~fy~~~~~~~~~~~~~fdl~~~g~-Ei~~G~~r~~d~~~l~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pp~~G~glGi 245 (269)
T cd00669 167 HSPLASPHDVNPEIADAFDLFINGV-EVGNGSSRLHDPDIQAEVFQEQGINKEAGMEYFEFYLKALEYGLPPHGGLGIGI 245 (269)
T ss_pred CCCCCCcCCCCCCeEEEEEEeeCCE-EEeeCchhcCCHHHHHHHHHHhCcChhhccccHHHHHHHHHcCCCCCceEeeHH
Confidence 999987654 578999999999996 999999999999999999999999998 8999999999988 3
Q ss_pred --HhhhhcCCCCCCCC
Q 012426 451 --LVFILIKVTNFLNC 464 (464)
Q Consensus 451 --L~mll~~~~~I~~~ 464 (464)
|+|+++|.+|||||
T Consensus 246 eRL~m~~~g~~~Irdv 261 (269)
T cd00669 246 DRLIMLMTNSPTIREV 261 (269)
T ss_pred HHHHHHHhCCCcHHHc
Confidence 99999999999997
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >PRK09350 poxB regulator PoxA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-58 Score=457.04 Aligned_cols=281 Identities=17% Similarity=0.141 Sum_probs=230.7
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccC
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFE 223 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 223 (464)
..+|++|+.|++++|+||.++||+||+||+|+..+. ++...+|.+....+ ....+
T Consensus 2 ~~~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~~f~~~y~~~------------------------~~~~~ 57 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVPFETRFVGP------------------------GASQG 57 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCCceeeeeccc------------------------cccCC
Confidence 468999999999999999999999999999987653 44455665421100 00227
Q ss_pred cccccccchhHHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCc
Q 012426 224 KPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK 302 (464)
Q Consensus 224 ~~~yL~~Spql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~ 302 (464)
+++||++|||++++ ++++|++|||+||||||||++ |.||++||||||||++|+|++|+|+++|+||+.++..
T Consensus 58 ~~~~L~~SPe~~~kr~la~~~~rvf~i~~~FR~e~~-~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li~~i~~~------ 130 (306)
T PRK09350 58 KTLWLMTSPEYHMKRLLAAGSGPIFQICKSFRNEEA-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC------ 130 (306)
T ss_pred cceEEecCHHHHHHHHhhccccceEEecceeecCCC-CCCCCcHHHhhhhhhhCCCHHHHHHHHHHHHHHHHhc------
Confidence 89999999999995 788899999999999999999 8999999999999999999999999999999988752
Q ss_pred ccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCC--CcccCCCccccccHHHHHHhhhhcc-cCCCeeeee
Q 012426 303 EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKK--KFEFLVKWGCDLQSEHERYLTEEAF-GGCPVIVSD 379 (464)
Q Consensus 303 ~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~--~~~~~~~~~~~l~~~~e~~l~e~~~-~~~p~fI~~ 379 (464)
.+|...++.++++++++.++...+++++.+.+++.|. ......+|+..++..++.+ +++.+ .+.|+||+|
T Consensus 131 ------~~~~~i~~~eaf~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~-ve~~l~~~~p~fi~~ 203 (306)
T PRK09350 131 ------EPAESLSYQQAFLRYLGIDPLSADKTQLREVAAKLGLSNIADEEEDRDTLLQLLFTFG-VEPNIGKEKPTFVYH 203 (306)
T ss_pred ------CCceEEEHHHHHHHHhCCCCCcCCHHHHHHHHHHcCCCCcCCCCCCHHHHHHHHHHHH-HHHhcCCCCCEEEEc
Confidence 3455667888888888888878899898888877765 1111223443344444443 44433 236999999
Q ss_pred CCCCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHH-------cCCCccch-HHHHHHhhhhh--
Q 012426 380 YPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-------LKLNRDSY-WWYLDLRHYGS-- 449 (464)
Q Consensus 380 yP~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~-------~g~~~~~~-~~yl~~~~~G~-- 449 (464)
||..++|||+..++++++++|||||++|+ ||+|||+|++|+++|++|+++ .|+++..+ +|||++++||+
T Consensus 204 yP~~~~~~a~~~~~~~~~~~rfdl~i~G~-Ei~nG~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~~l~a~~~G~pp 282 (306)
T PRK09350 204 FPASQAALAKISTEDHRVAERFEVYFKGI-ELANGFHELTDAREQRQRFEQDNRKRAARGLPQQPIDENLIAALEAGLPD 282 (306)
T ss_pred CccccCccccccCCCCCeeEEEEEEECCE-EEecchhhcCCHHHHHHHHHHHHHHHHhCCCCcccCcHHHHHHHHcCCCC
Confidence 99999999998777889999999999998 999999999999999999974 78888888 56999999988
Q ss_pred ------h---HhhhhcCCCCCCCC
Q 012426 450 ------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 450 ------g---L~mll~~~~~I~~~ 464 (464)
| |+|+++|.+||||+
T Consensus 283 ~~G~giGidRL~m~~~g~~~Irdv 306 (306)
T PRK09350 283 CSGVALGVDRLIMLALGAESISEV 306 (306)
T ss_pred CCceEecHHHHHHHHcCCCCcccC
Confidence 3 99999999999986
|
|
| >KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-56 Score=444.32 Aligned_cols=393 Identities=21% Similarity=0.312 Sum_probs=296.7
Q ss_pred ccceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhh--hhcCCCCCCcEE
Q 012426 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ--VKSGLITTGASI 86 (464)
Q Consensus 9 ~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~--~~~~~l~~g~~V 86 (464)
+++..|.++... .+|+.|.+|||+...|.+|.+.|..|||..|. +|+.++.+.-...+ .+. ++.+|+|
T Consensus 33 ~~t~~~~el~~~------~vg~kv~l~GWl~~~~~~k~~~F~~LRD~~G~--vq~lls~~s~~l~~~~~~~--v~~e~vv 102 (628)
T KOG2411|consen 33 SRTSLCGELSVN------DVGKKVVLCGWLELHRVHKMLTFFNLRDAYGI--VQQLLSPDSFPLAQKLEND--VPLEDVV 102 (628)
T ss_pred hhhccchhhccC------ccCCEEEEeeeeeeeeccccceEEEeeccCcc--eEEEecchhhhHHhcccCC--CChhheE
Confidence 556778777764 78999999999999999999999999999985 88888876532222 344 9999999
Q ss_pred EEEEEEEeCCC-------CCceEEEEEeeEEEEecCCCCCCCCccc-------cchhhhhhcceecCCCccchhhhhHHH
Q 012426 87 WIQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR-------VSREFLRTKAHLRPRTNTFGAVARVRN 152 (464)
Q Consensus 87 ~V~G~v~~~~~-------~~~~~el~~~~i~vls~~~~~~P~~~~~-------~~~~~~r~~r~l~~R~~~~~~~~~~rs 152 (464)
.|+|+|+..+. ..+.+|+.++++++++++...+|+...+ .+..+.+.+||||||++.++..+|+||
T Consensus 103 ~v~gtvv~Rp~~sin~km~tg~vev~~e~~~vln~~~~~~p~~v~df~~ld~~~~er~rl~~RyldLR~~kmq~nLrlRS 182 (628)
T KOG2411|consen 103 QVEGTVVSRPNESINSKMKTGFVEVVAEKVEVLNPVNKKLPFEVTDFKELDDLAGERIRLRFRYLDLRRPKMQNNLRLRS 182 (628)
T ss_pred eeeeeEecccccccCccccccceEEEeeeeEEecCccCCCccchhhhhhhhccccccccchhhhhhhccHHHHHHHHHHH
Confidence 99999987632 3467999999999999998778876432 344556699999999999999999999
Q ss_pred HHHHHHHHHhhhC-CcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccc
Q 012426 153 ALAYATHKFFQEN-GFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVS 231 (464)
Q Consensus 153 ~i~~~~r~ff~~~-gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~S 231 (464)
.+...+|+||.++ ||+||+||.|-..++||+.+ |.|....+ .+.|| -|.||
T Consensus 183 ~~v~~iR~yl~n~~GFvevETPtLFkrTPgGA~E-FvVPtr~~-----------------------~g~FY----aLpQS 234 (628)
T KOG2411|consen 183 NVVKKIRRYLNNRHGFVEVETPTLFKRTPGGARE-FVVPTRTP-----------------------RGKFY----ALPQS 234 (628)
T ss_pred HHHHHHHHHHhhhcCeeeccCcchhccCCCccce-eecccCCC-----------------------CCcee----ecCCC
Confidence 9999999999874 79999999999999998777 54432111 02455 49999
Q ss_pred hhHHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCccccccccc
Q 012426 232 GQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNT 310 (464)
Q Consensus 232 pql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~ 310 (464)
||.||| ||++|++|+|||++|||+|++...|+ |||||+|+||+|.+.+|+|+++|+++++++....+.
T Consensus 235 PQQfKQlLMvsGidrYyQiARCfRDEdlR~DRQ-PEFTQvD~EMsF~~~~dim~liEdll~~~ws~~k~~---------- 303 (628)
T KOG2411|consen 235 PQQFKQLLMVSGIDRYYQIARCFRDEDLRADRQ-PEFTQVDMEMSFTDQEDIMKLIEDLLRYVWSEDKGI---------- 303 (628)
T ss_pred HHHHHHHHHHhchhhHHhHHhhhcccccCcccC-CcceeeeeEEeccCHHHHHHHHHHHHHHhchhhcCC----------
Confidence 999999 58999999999999999999987776 899999999999999999999999999998776541
Q ss_pred ccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCC--Ccc----------------------------------------
Q 012426 311 WIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKK--KFE---------------------------------------- 348 (464)
Q Consensus 311 ~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~--~~~---------------------------------------- 348 (464)
-+..||+||||+||++.+....- .+.
T Consensus 304 ------------~l~~PF~riTY~~Am~~YG~DKPD~Rf~l~l~dv~~~~~~~~~~~~~~d~l~~~~~vv~~~~~~~~s~ 371 (628)
T KOG2411|consen 304 ------------QLPVPFPRITYADAMDKYGSDKPDTRFPLKLKDVSESISKSFEEALLSDGLISVEIVVLGAKKYSNSN 371 (628)
T ss_pred ------------CCCCCcccccHHHHHHHhCCCCCcccCCcEecchHHhhhhhhhhhhhcCCccceEEEEeccccccchh
Confidence 12234555555555544432100 000
Q ss_pred -------------------cC------CCccccc---------------------------------------------c
Q 012426 349 -------------------FL------VKWGCDL---------------------------------------------Q 358 (464)
Q Consensus 349 -------------------~~------~~~~~~l---------------------------------------------~ 358 (464)
.+ -.|-..+ .
T Consensus 372 ~~~rk~~e~~~~~~~~~~~f~~~~~~~~~w~~~~~~l~~e~~~~el~~~~~l~~~Div~~~~g~~~~~~~~LgrlRL~l~ 451 (628)
T KOG2411|consen 372 YKKRKIYESLGKSGFVGLPFPIEHDANKNWFKKFSSLTDEAVAIELIKQLGLAEGDIVLLCVGPKVSVNTPLGRLRLVLQ 451 (628)
T ss_pred hHHhHHHHHHhhcccccceeeeeccchhhhhhhchhhccchHHHHHHHHhCCCCCCEEEEeccCCccCCCchHHHHHHHH
Confidence 00 0011000 0
Q ss_pred HHHHHHhhhhcccCCCeeeeeCCCCC-------------cccccccCCC-------C--CceeeEEEeeCCccccccCcc
Q 012426 359 SEHERYLTEEAFGGCPVIVSDYPKEI-------------KAFYMRQNDD-------G--RTVAAMDMLVPRIGELIGGSQ 416 (464)
Q Consensus 359 ~~~e~~l~e~~~~~~p~fI~~yP~~~-------------~pfy~~~~~d-------~--~~~~~fdl~~~GigEi~~G~~ 416 (464)
.++.+-+.++ ......||+|||... .||.+++.+| + -....|||+++|+ ||.|||.
T Consensus 452 ~l~~~~l~d~-~~~~~lWVvDFPLF~p~~E~~q~L~StHHPFTaP~~~Di~~L~s~p~~~rgqhYDlV~NGv-ElGGGSi 529 (628)
T KOG2411|consen 452 DLLVKNLRDK-SKFSFLWVVDFPLFSPWEEKNQRLESTHHPFTAPHPKDIDLLESAPEKIRGQHYDLVVNGV-ELGGGSI 529 (628)
T ss_pred HHHhcccccc-ccceEEEEEeccccCccccCCceeccccCCCCCCChhhhhHhhcCchhhhcceeeeEEccE-eecCcee
Confidence 0111111111 112578999999863 6888877653 1 2346799999998 9999999
Q ss_pred ccccHHHHHHHHHHcC-CCccchH--HHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 417 REERLEYLEGRLDELK-LNRDSYW--WYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 417 r~~d~~~l~~r~~~~g-~~~~~~~--~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
|+|+++.|+.-++.-. ++.+.+. ..|+|+.+|+ | |+|+++|.+||||.
T Consensus 530 RIhn~diQr~vLe~iLk~p~~~~s~gHLL~ALd~GaPPHGGiAlGlDRlvaml~~a~sIRDV 591 (628)
T KOG2411|consen 530 RIHNPDIQRYVLEDILKIPEDAESKGHLLNALDMGAPPHGGIALGLDRLVAMLTGAPSIRDV 591 (628)
T ss_pred EecCHHHHHHHHHHHhcCchhhhhHHHHHHHhhcCCCCCCceeecHHHHHHHHcCCCchhee
Confidence 9999999999888654 4433333 5699999998 2 99999999999983
|
|
| >cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-54 Score=424.14 Aligned_cols=252 Identities=26% Similarity=0.377 Sum_probs=199.6
Q ss_pred hhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccc
Q 012426 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAF 227 (464)
Q Consensus 148 ~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~y 227 (464)
+++||+|++++|+||.++||+||+||+|++++++|+++ |.+.. . ...+..+|
T Consensus 1 l~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~~~-f~~~~-~--------------------------~~~~~~~~ 52 (280)
T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGARD-FLVPS-R--------------------------LHPGKFYA 52 (280)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEeCCeeecCCCCCCCC-ceecc-c--------------------------cCCCceee
Confidence 58999999999999999999999999999988887755 75421 0 11234556
Q ss_pred cccchhHHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCccccc
Q 012426 228 LTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMD 306 (464)
Q Consensus 228 L~~Spql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~ 306 (464)
|+|||||||| ++++|++|||+|+||||+|++++.||+ ||||+|||++|+|++|+|+++|+||++++..+.+.
T Consensus 53 L~~Spql~lk~ll~~g~~~v~~i~~~fR~e~~~~~r~~-Ef~~~e~e~~~~~~~dlm~~~e~li~~i~~~~~~~------ 125 (280)
T cd00777 53 LPQSPQLFKQLLMVSGFDRYFQIARCFRDEDLRADRQP-EFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEVLGV------ 125 (280)
T ss_pred cccCHHHHHHHHHhcCcCcEEEeccceeCCCCCCCccc-eeEEeEeeeccCCHHHHHHHHHHHHHHHHHHHhCC------
Confidence 9999999998 567999999999999999999877775 99999999999999999999999999999887642
Q ss_pred ccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeee-CCCCCc
Q 012426 307 FFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSD-YPKEIK 385 (464)
Q Consensus 307 ~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~-yP~~~~ 385 (464)
....||++|||.||++.+. . .+.|+.++... +..+. .+.++++++ ||....
T Consensus 126 ----------------~~~~p~~rity~eA~~~~~---~----~~~~~~d~~~~-~~~~~----~~~~~~~~~pf~~~~~ 177 (280)
T cd00777 126 ----------------ELTTPFPRMTYAEAMERYG---F----KFLWIVDFPLF-EWDEE----EGRLVSAHHPFTAPKE 177 (280)
T ss_pred ----------------CCCCCCceeeHHHHHHHhC---C----CCccccCCccc-CChhH----HHHHHHHhCCCcCCCc
Confidence 1235899999999998753 2 23466554310 00000 113444554 444332
Q ss_pred ---ccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHcCCC----ccchHHHHHHhhhhh--------h
Q 012426 386 ---AFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGS--------G 450 (464)
Q Consensus 386 ---pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~----~~~~~~yl~~~~~G~--------g 450 (464)
|+++..+++ ++++|||||++|+ ||+|||+|+||+++|++||++.|++ ++.++|||++++||+ |
T Consensus 178 ~~~~~~~~~~~~-~~~~~fdl~~~G~-Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~a~~~G~pP~~G~giG 255 (280)
T cd00777 178 EDLDLLEKDPED-ARAQAYDLVLNGV-ELGGGSIRIHDPDIQEKVFEILGLSEEEAEEKFGFLLEAFKYGAPPHGGIALG 255 (280)
T ss_pred ccchhhhcCCcc-CeeEEEEEEeCCE-EEccCEEEcCCHHHHHHHHHHcCCChhhhhhhHHHHHHHHHCCCCCCCeEeEh
Confidence 243332223 7999999999997 9999999999999999999999998 456899999999988 3
Q ss_pred ---HhhhhcCCCCCCCC
Q 012426 451 ---LVFILIKVTNFLNC 464 (464)
Q Consensus 451 ---L~mll~~~~~I~~~ 464 (464)
|+|+++|.+|||||
T Consensus 256 idRL~m~~~g~~~Irdv 272 (280)
T cd00777 256 LDRLVMLLTGSESIRDV 272 (280)
T ss_pred HHHHHHHHcCCCchheE
Confidence 99999999999986
|
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. |
| >COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-49 Score=373.45 Aligned_cols=281 Identities=19% Similarity=0.160 Sum_probs=229.0
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 222 (464)
....+..|+.|+++||.||.++||+||+||.|+.+. .+.+-.+|++....+ ..--
T Consensus 12 ~~~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~------------------------~~~~ 67 (322)
T COG2269 12 SIDNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGP------------------------GGAK 67 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCccceeeeeeEEecc------------------------Cccc
Confidence 344588999999999999999999999999999865 578888887654332 0111
Q ss_pred CcccccccchhHHH-HHHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcC
Q 012426 223 EKPAFLTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC 301 (464)
Q Consensus 223 ~~~~yL~~Spql~l-qll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~ 301 (464)
+++.||++|||+|| +|+++|-+++||||+||||++. +++|+|||||||||+++.||+.+|+.+.+|+..++....
T Consensus 68 ~~~l~L~TSPEy~mKrLLAag~~~ifql~kvfRN~E~-G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~~~~--- 143 (322)
T COG2269 68 GKPLWLHTSPEYHMKRLLAAGSGPIFQLGKVFRNEEM-GRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLECVE--- 143 (322)
T ss_pred cceeeeecCcHHHHHHHHHccCCcchhhhHHHhcccc-cccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHHccCC---
Confidence 68999999999999 6999999999999999999997 799999999999999999999999999999988876542
Q ss_pred cccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhh-cccCCCeeeeeC
Q 012426 302 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEE-AFGGCPVIVSDY 380 (464)
Q Consensus 302 ~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~-~~~~~p~fI~~y 380 (464)
....++.+++..++|.+.....-++..+.+.+.|+......+|.+.++..+-.. +|+ ++.++|+||+||
T Consensus 144 ---------~E~ls~~eaF~r~~gid~l~~~~~~L~~~~~~~~l~~~~~~~~d~L~~~lf~~~-VEP~lg~~rpt~ly~f 213 (322)
T COG2269 144 ---------AERLSYQEAFLRYLGIDPLSADKTELREAAAKLGLSAATDEDWDTLLQLLFVEG-VEPNLGKERPTFLYHF 213 (322)
T ss_pred ---------cceeeHHHHHHHHhCCCcccccHHHHHHHHHhcCCCCCCccCHHHHHHHHHHhh-cCcccCCCCceEEEeC
Confidence 224577788888999887776666666777777776433345554444433333 333 456689999999
Q ss_pred CCCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHH-------cCCCccc-hHHHHHHhhh-----
Q 012426 381 PKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-------LKLNRDS-YWWYLDLRHY----- 447 (464)
Q Consensus 381 P~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~-------~g~~~~~-~~~yl~~~~~----- 447 (464)
|..+..+++..+.|+++++|||||++|| ||+||+.|++|+.+|++||+. .|+..-+ .++||.|+..
T Consensus 214 P~~qaaLA~i~~~D~rVAERFElY~kGi-ELaNgf~EltDa~EqrrRfe~dn~~r~~~~l~~~piDe~fl~Ala~mP~cS 292 (322)
T COG2269 214 PASQAALAQISTGDPRVAERFELYYKGI-ELANGFHELTDAAEQRRRFEQDNKERARRGLPQYPIDEDFLAALARMPPCS 292 (322)
T ss_pred cHHHHHhhccCCCCcchhhhhhheeeee-eecccchhcCCHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHhCCCcc
Confidence 9999999999999999999999999999 999999999999999999973 2343333 4889999986
Q ss_pred hh--h---HhhhhcCCCCCCC
Q 012426 448 GS--G---LVFILIKVTNFLN 463 (464)
Q Consensus 448 G~--g---L~mll~~~~~I~~ 463 (464)
|+ | ||||++|..+|.|
T Consensus 293 GvALG~DRLvmLalg~~~i~~ 313 (322)
T COG2269 293 GVALGFDRLVMLALGAESIDD 313 (322)
T ss_pred cceecHHHHHHHHcCcchHHH
Confidence 33 4 9999999999875
|
|
| >cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-21 Score=172.86 Aligned_cols=122 Identities=18% Similarity=0.339 Sum_probs=101.4
Q ss_pred ceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccc-hhhhhcCCCCCCcEEEEE
Q 012426 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQ 89 (464)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~-~~~~~~~~l~~g~~V~V~ 89 (464)
+++++++... ..|+.|+|+|||+++|.+|+++|++|+|++| .+|+|++.+... ++.++. |+.||+|.|+
T Consensus 2 ~~~~~~~~~~------~~g~~V~i~Gwv~~~R~~gk~~Fi~LrD~~g--~~Q~v~~~~~~~~~~~~~~--l~~gs~V~V~ 71 (135)
T cd04317 2 THYCGELRES------HVGQEVTLCGWVQRRRDHGGLIFIDLRDRYG--IVQVVFDPEEAPEFELAEK--LRNESVIQVT 71 (135)
T ss_pred ceehhhCChh------HCCCEEEEEEeEehhcccCCEEEEEEecCCe--eEEEEEeCCchhHHHHHhC--CCCccEEEEE
Confidence 4667777653 5689999999999999999999999999997 499999865433 556777 9999999999
Q ss_pred EEEEeCCC-------CCceEEEEEeeEEEEecCCCCCCCCccc---cchhhhhhcceecCCCcc
Q 012426 90 GNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNT 143 (464)
Q Consensus 90 G~v~~~~~-------~~~~~el~~~~i~vls~~~~~~P~~~~~---~~~~~~r~~r~l~~R~~~ 143 (464)
|++..++. ..+++||.++++++|++| .++|+..+. .+.+++.++||||||++.
T Consensus 72 G~~~~~~~~~~~~~~~~~~~El~~~~i~vl~~~-~~lP~~~~~~~~~~~~~r~~~R~LdLR~~~ 134 (135)
T cd04317 72 GKVRARPEGTVNPKLPTGEIEVVASELEVLNKA-KTLPFEIDDDVNVSEELRLKYRYLDLRRPK 134 (135)
T ss_pred EEEECCCccccCCCCCCCcEEEEEeEEEEEECC-CCCCCccccccCCCHHHhhhcceeecCCCC
Confidence 99997542 345699999999999999 578887654 357788899999999974
|
These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh |
| >cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS) | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-20 Score=156.22 Aligned_cols=101 Identities=27% Similarity=0.486 Sum_probs=89.3
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc--cchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEee
Q 012426 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (464)
Q Consensus 31 ~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~--~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~ 108 (464)
+|+|+|||+++|.+|+++|++|||++|. +|+|++.+. ..++.++. |+.||+|.|+|++.+++...+++||++++
T Consensus 1 ~V~v~Gwv~~~R~~gk~~Fi~lrD~~g~--iQ~v~~~~~~~~~~~~~~~--l~~~s~v~V~G~v~~~~~~~~~~Ei~~~~ 76 (103)
T cd04319 1 KVTLAGWVYRKREVGKKAFIVLRDSTGI--VQAVFSKDLNEEAYREAKK--VGIESSVIVEGAVKADPRAPGGAEVHGEK 76 (103)
T ss_pred CEEEEEEEEeEEcCCCeEEEEEecCCee--EEEEEeCCCCHHHHHHHhC--CCCCCEEEEEEEEEECCCCCCCEEEEEEE
Confidence 3899999999999999999999999974 999998652 33566777 99999999999999988777789999999
Q ss_pred EEEEecCCCCCCCCccccchhhhhhccee
Q 012426 109 IVLVGKSDPSYPIQKKRVSREFLRTKAHL 137 (464)
Q Consensus 109 i~vls~~~~~~P~~~~~~~~~~~r~~r~l 137 (464)
++++|+|. ++|++.+. +.++++++|||
T Consensus 77 i~vl~~a~-~~pi~~~~-~~~~~~~~rhL 103 (103)
T cd04319 77 LEIIQNVE-FFPITEDA-SDEFLLDVRHL 103 (103)
T ss_pred EEEEecCC-CCccCCCC-CHHHHhhccCC
Confidence 99999996 79998764 89999999997
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. |
| >cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-19 Score=151.26 Aligned_cols=102 Identities=19% Similarity=0.379 Sum_probs=87.3
Q ss_pred ecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc---cchhhhhcCCCCCCcEEEEE
Q 012426 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQ 89 (464)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V~V~ 89 (464)
+|.++.. ...|+.|+|+|||+++|.+|+++|++|||++|. +|+|++.+. ..++.++. |+.||+|.|+
T Consensus 2 ~~~~l~~------~~~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~~~~--l~~es~V~V~ 71 (108)
T cd04316 2 YSAEITP------ELDGEEVTVAGWVHEIRDLGGIKFVILRDREGI--VQVTAPKKKVDKELFKTVRK--LSRESVISVT 71 (108)
T ss_pred ChhhCch------hhCCCEEEEEEEEEeeeccCCeEEEEEecCCee--EEEEEeCCCCCHHHHHHHhC--CCCcCEEEEE
Confidence 4566654 357899999999999999999999999999974 999998653 23666778 9999999999
Q ss_pred EEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCcc
Q 012426 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKK 124 (464)
Q Consensus 90 G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~ 124 (464)
|++.+++...+++||+++++++++++..++|++.+
T Consensus 72 G~v~~~~~~~~~~Ei~~~~i~il~~~~~~~P~~~~ 106 (108)
T cd04316 72 GTVKAEPKAPNGVEIIPEEIEVLSEAKTPLPLDPT 106 (108)
T ss_pred EEEEeCCCCCCCEEEEEeEEEEEeCCCCCCCcCcC
Confidence 99999887777899999999999999877888643
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes. |
| >cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS) | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.7e-19 Score=151.23 Aligned_cols=104 Identities=21% Similarity=0.315 Sum_probs=83.7
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc---cchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEe
Q 012426 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (464)
Q Consensus 31 ~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~ 107 (464)
+|+|+|||+++|.+|+++|++|+|+++ .+|+|++.+. ..|..+.+ .|+.||+|.|+|++.+++++ ++||.++
T Consensus 1 ~v~v~GwV~~~R~~g~~~Fi~lrd~~~--~lQ~v~~~~~~~~~~~~~~~~-~l~~g~~V~v~G~v~~~~~g--~~El~~~ 75 (108)
T cd04322 1 EVSVAGRIMSKRGSGKLSFADLQDESG--KIQVYVNKDDLGEEEFEDFKK-LLDLGDIIGVTGTPFKTKTG--ELSIFVK 75 (108)
T ss_pred CEEEEEEEEEEecCCCeEEEEEEECCe--EEEEEEECCCCCHHHHHHHHh-cCCCCCEEEEEEEEEecCCC--CEEEEeC
Confidence 389999999999999999999999986 5999998653 33444322 29999999999999999874 4999999
Q ss_pred eEEEEecCCCCCCCCccc-cchhhhhhcceecC
Q 012426 108 KIVLVGKSDPSYPIQKKR-VSREFLRTKAHLRP 139 (464)
Q Consensus 108 ~i~vls~~~~~~P~~~~~-~~~~~~r~~r~l~~ 139 (464)
+++|+|+|..++|+.... .+.++++++||||+
T Consensus 76 ~~~ils~~~~plP~~~~~~~~~~~r~~~R~ldl 108 (108)
T cd04322 76 EFTLLSKSLRPLPEKFHGLTDVETRYRQRYLDL 108 (108)
T ss_pred EeEEeeccCCCCCCCccCcCChhheeecccccC
Confidence 999999997444443322 35677789999985
|
These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein |
| >cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-17 Score=137.23 Aligned_cols=89 Identities=24% Similarity=0.377 Sum_probs=75.3
Q ss_pred EEEEEEEEeeeecCC-CeEEEEEEeCcCCcceEEEEeCCc-----cchhhhhcCCCCCCcEEEEEEEEEeCCCC-----C
Q 012426 31 MIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-----EGYDQVKSGLITTGASIWIQGNVVPSQGS-----K 99 (464)
Q Consensus 31 ~V~v~GwV~~iR~~g-~~~Fi~LrD~sg~~~iQvv~~~~~-----~~~~~~~~~~l~~g~~V~V~G~v~~~~~~-----~ 99 (464)
.|+|+|||+++|.+| +++|++|||++| .+|+|++.+. ..++.++. |+.||+|.|+|++.+++.. .
T Consensus 1 ~V~i~Gwv~~~R~~g~k~~Fi~LrD~sg--~iQ~v~~~~~~~~~~~~~~~~~~--l~~es~V~V~G~v~~~~~~~~~~~~ 76 (102)
T cd04320 1 EVLIRARVHTSRAQGAKLAFLVLRQQGY--TIQGVLAASAEGVSKQMVKWAGS--LSKESIVDVEGTVKKPEEPIKSCTQ 76 (102)
T ss_pred CEEEEEEEEEeecCCCceEEEEEecCCc--eEEEEEeCCcccCCHHHHHHHhc--CCCccEEEEEEEEECCCCcccCCCc
Confidence 389999999999998 999999999997 4999998653 12344677 9999999999999987552 2
Q ss_pred ceEEEEEeeEEEEecCCCCCCCCc
Q 012426 100 QKVELKVNKIVLVGKSDPSYPIQK 123 (464)
Q Consensus 100 ~~~el~~~~i~vls~~~~~~P~~~ 123 (464)
+++||+++++++|++|..++|++.
T Consensus 77 ~~~El~~~~i~il~~~~~~~P~~~ 100 (102)
T cd04320 77 QDVELHIEKIYVVSEAAEPLPFQL 100 (102)
T ss_pred CcEEEEEEEEEEEecCCCCCCCCC
Confidence 679999999999999976788864
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. |
| >cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.9e-17 Score=131.20 Aligned_cols=82 Identities=40% Similarity=0.791 Sum_probs=73.5
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEE
Q 012426 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (464)
Q Consensus 31 ~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~ 110 (464)
.|+|+|||+++|.+|+++|++|||+++..++||+++++...++.++. |+.||+|.|+|.+.+++.+.+++||++++++
T Consensus 1 ~v~v~Gwv~~~R~~g~~~Fi~LrD~s~~~~lQvv~~~~~~~~~~~~~--l~~gs~V~v~G~v~~~~~~~~~~El~~~~i~ 78 (82)
T cd04318 1 EVTVNGWVRSVRDSKKISFIELNDGSCLKNLQVVVDKELTNFKEILK--LSTGSSIRVEGVLVKSPGAKQPFELQAEKIE 78 (82)
T ss_pred CEEEEEeEEEEEcCCcEEEEEEECCCCccCEEEEEeCcccCHHHHhc--CCCceEEEEEEEEEeCCCCCCCEEEEEEEEE
Confidence 38999999999999999999999999866799999877555667788 9999999999999999876778999999999
Q ss_pred EEec
Q 012426 111 LVGK 114 (464)
Q Consensus 111 vls~ 114 (464)
+++.
T Consensus 79 il~~ 82 (82)
T cd04318 79 VLGE 82 (82)
T ss_pred EecC
Confidence 9863
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial |
| >cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=130.32 Aligned_cols=81 Identities=20% Similarity=0.391 Sum_probs=71.4
Q ss_pred EEEEEEEEeeeec-CCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCC----ceEEEE
Q 012426 31 MIVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSK----QKVELK 105 (464)
Q Consensus 31 ~V~v~GwV~~iR~-~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~----~~~el~ 105 (464)
+|+|+|||+++|. +|+++|++|||++| ..+||+++++...|+.++. |+.||+|.|+|++..++.+. +++||.
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~~g-~~iQvv~~~~~~~~~~~~~--l~~~s~V~V~G~v~~~~~~~~~~~~~~Ei~ 77 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDPNG-DIIQLVSTAKKDAFSLLKS--ITAESPVQVRGKLQLKEAKSSEKNDEWELV 77 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECCCC-CEEEEEECCCHHHHHHHhc--CCCCcEEEEEEEEEeCCCcCCCCCCCEEEE
Confidence 3899999999999 68999999999998 4699999876556777788 99999999999999988654 779999
Q ss_pred EeeEEEEec
Q 012426 106 VNKIVLVGK 114 (464)
Q Consensus 106 ~~~i~vls~ 114 (464)
++++++|++
T Consensus 78 ~~~i~il~~ 86 (86)
T cd04321 78 VDDIQTLNA 86 (86)
T ss_pred EEEEEEecC
Confidence 999999984
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for |
| >cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-16 Score=127.03 Aligned_cols=80 Identities=29% Similarity=0.559 Sum_probs=71.0
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccc-hhhhhcCCCCCCcEEEEEEEEEeCCCC---CceEEEEE
Q 012426 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQGNVVPSQGS---KQKVELKV 106 (464)
Q Consensus 31 ~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~-~~~~~~~~l~~g~~V~V~G~v~~~~~~---~~~~el~~ 106 (464)
.|+|+|||+++|.+|+++|++|||++|. +|++++.+... ++.++. |+.||+|.|+|++.+++.+ .+++||++
T Consensus 1 ~V~v~Gwv~~~R~~g~~~Fi~LrD~~~~--iQ~v~~~~~~~~~~~~~~--l~~es~V~V~G~v~~~~~~~~~~~~~Ei~~ 76 (84)
T cd04323 1 RVKVFGWVHRLRSQKKLMFLVLRDGTGF--LQCVLSKKLVTEFYDAKS--LTQESSVEVTGEVKEDPRAKQAPGGYELQV 76 (84)
T ss_pred CEEEEEEEEEEecCCCcEEEEEEcCCeE--EEEEEcCCcchhHHHHhc--CCCcCEEEEEEEEEECCcccCCCCCEEEEE
Confidence 3899999999999999999999999975 99999865433 566778 9999999999999999877 77899999
Q ss_pred eeEEEEec
Q 012426 107 NKIVLVGK 114 (464)
Q Consensus 107 ~~i~vls~ 114 (464)
+++++||+
T Consensus 77 ~~i~vl~~ 84 (84)
T cd04323 77 DYLEIIGE 84 (84)
T ss_pred EEEEEEcC
Confidence 99999985
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with |
| >cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.9e-16 Score=124.69 Aligned_cols=80 Identities=25% Similarity=0.548 Sum_probs=70.0
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccc--hhhhhcCCCCCCcEEEEEEEEEeCCC---CCceEEEE
Q 012426 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG--YDQVKSGLITTGASIWIQGNVVPSQG---SKQKVELK 105 (464)
Q Consensus 31 ~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~--~~~~~~~~l~~g~~V~V~G~v~~~~~---~~~~~el~ 105 (464)
.|+|+|||+++|.+|+++|++|||+++ .+|++++.+... ++.++. |+.||+|.|+|++.+++. ..+++||.
T Consensus 1 ~V~i~Gwv~~~R~~g~~~Fi~Lrd~~~--~iQ~v~~~~~~~~~~~~~~~--l~~~s~V~v~G~~~~~~~~~~~~~~~El~ 76 (85)
T cd04100 1 EVTLAGWVHSRRDHGGLIFIDLRDGSG--IVQVVVNKEELGEFFEEAEK--LRTESVVGVTGTVVKRPEGNLATGEIELQ 76 (85)
T ss_pred CEEEEEEEehhccCCCEEEEEEEeCCe--eEEEEEECCcChHHHHHHhC--CCCCCEEEEEeEEEECCCCCCCCCCEEEE
Confidence 389999999999999999999999996 599999876433 455677 999999999999999885 45789999
Q ss_pred EeeEEEEec
Q 012426 106 VNKIVLVGK 114 (464)
Q Consensus 106 ~~~i~vls~ 114 (464)
+++++++++
T Consensus 77 ~~~i~il~~ 85 (85)
T cd04100 77 AEELEVLSK 85 (85)
T ss_pred EeEEEEECC
Confidence 999999985
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A |
| >PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.9e-11 Score=120.23 Aligned_cols=128 Identities=21% Similarity=0.247 Sum_probs=87.8
Q ss_pred CCccchhhhhH-----HHHHHHHHHHHhhhCCcEEEeCceEeecCC-CCCCCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 140 RTNTFGAVARV-----RNALAYATHKFFQENGFIWISSPIITASDC-EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 140 R~~~~~~~~~~-----rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
|.+..++++.+ .+.+.+++|++|...||.||.||.|+.... +..+..-.....++
T Consensus 190 r~~~~~~~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~------------------- 250 (417)
T PRK09537 190 RKNDLKQMYEEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQ------------------- 250 (417)
T ss_pred cchhhHHhhccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhh-------------------
Confidence 77788999999 999999999999999999999999985421 11000000000000
Q ss_pred CccccccccCcccccc--cchhHHHHHHh-----hccCceEEEccccccCCCCCccccccchhccceeccCC--HHHHHH
Q 012426 214 LIDWSQDFFEKPAFLT--VSGQLNAETYA-----TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD--LKDDMA 284 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~--~Spql~lqll~-----~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~--~~dlm~ 284 (464)
.-..+...+|+ ..|+|+..+.. ..--|+|+||+|||+|.. +.+|++||+|++++....+ +.+++.
T Consensus 251 -----my~ideel~LRpsLtPsLlr~la~n~k~~~~P~RIFEIG~VFR~E~~-g~~hlrEf~Ql~~~iiGs~~~f~dL~~ 324 (417)
T PRK09537 251 -----IFRVDKNFCLRPMLAPGLYNYLRKLDRILPDPIKIFEIGPCYRKESD-GKEHLEEFTMVNFCQMGSGCTRENLEN 324 (417)
T ss_pred -----heeeCCceEehhhhHHHHHHHHHhhhhcccCCeeEEEEeceEecCCC-CCCCcceEEEEEEEEeCCchHHHHHHH
Confidence 00023456677 56776653321 112489999999999987 5899999999999998753 677776
Q ss_pred HHHHHHHH
Q 012426 285 CATAYLQY 292 (464)
Q Consensus 285 ~~e~li~~ 292 (464)
+++++++.
T Consensus 325 lleeLL~~ 332 (417)
T PRK09537 325 IIDDFLKH 332 (417)
T ss_pred HHHHHHHH
Confidence 66666654
|
|
| >cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.5e-10 Score=106.24 Aligned_cols=116 Identities=21% Similarity=0.304 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhhhCCcEEEeCceEeecC-CCCCCCCce-eeecCCCcccccCCCCCCCCCCCCCCccccccccCcccc
Q 012426 150 VRNALAYATHKFFQENGFIWISSPIITASD-CEGAGEQFC-VTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAF 227 (464)
Q Consensus 150 ~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~eg~~~~F~-vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~y 227 (464)
+|+.+.+.+|++|.+.||.||.||.+++.. .+..+.... +...+ +..+...+
T Consensus 1 ~~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~ 54 (211)
T cd00768 1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVG--------------------------AENEEDLY 54 (211)
T ss_pred CHHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeee--------------------------cCCCCEEE
Confidence 367899999999999999999999998852 222111111 10111 12345678
Q ss_pred cccchhHHH-HHHhh----ccCceEEEccccccCCCCCc--cccccchhccceeccCC------HHHHHHHHHHHHHH
Q 012426 228 LTVSGQLNA-ETYAT----ALSNVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFAD------LKDDMACATAYLQY 292 (464)
Q Consensus 228 L~~Spql~l-qll~~----g~~rVfeI~~~FR~E~~~t~--rHl~EFtmlE~e~a~~~------~~dlm~~~e~li~~ 292 (464)
|+.|....+ ++++. .--|+||||+|||+|.. +. +|+.||+|+++++.+.+ +.++++.++++++.
T Consensus 55 LR~s~~~~l~~~~~~n~~~~~~~lfeig~vfr~e~~-~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 131 (211)
T cd00768 55 LRPTLEPGLVRLFVSHIRKLPLRLAEIGPAFRNEGG-RRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRA 131 (211)
T ss_pred ECCCCcHHHHHHHHhhcccCCEEEEEEcceeecCCC-ccccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHH
Confidence 999999999 55554 44689999999999976 34 78899999999999864 35566666666543
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. |
| >KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-10 Score=113.41 Aligned_cols=144 Identities=16% Similarity=0.189 Sum_probs=104.6
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccC---CC----------CCCCCCC
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAE---SP----------VDAIPKT 210 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~---~~----------~~~~~~~ 210 (464)
.+-++++| ..+|++|-+.||.|+.|.....+.-.....+|+.+.|+++..|++. +| +++++.+
T Consensus 211 lHPLmKvR----~eFRqiF~emGFsEMptn~yVEssFWNFDALfqPQqHpARDahDTFfl~~Pa~s~~~p~dY~~rVk~v 286 (483)
T KOG2784|consen 211 LHPLMKVR----EEFRQIFFEMGFSEMPTNNYVESSFWNFDALFQPQQHPARDAHDTFFLKDPATSTKFPEDYLERVKAV 286 (483)
T ss_pred cchHHHHH----HHHHHHHHHccccccccccchhhccccchhhcCcccCCccccccceEecChhhcccCCHHHHHHHHHH
Confidence 45567777 5689999999999999999999888889999998888888777633 12 2333344
Q ss_pred CCCCccccccccCcccc-------------cccchhHHHHHHhhcc--CceEEEccccccCCCCCccccccchhccceec
Q 012426 211 KDGLIDWSQDFFEKPAF-------------LTVSGQLNAETYATAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELA 275 (464)
Q Consensus 211 ~~~~~~~~~~~f~~~~y-------------L~~Spql~lqll~~g~--~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a 275 (464)
|+.+ .+..--|+.+|- -++|..+.-+|.-.|| .|+|.|.+|||||..| .+||+||+|+|.-.+
T Consensus 287 H~~G-~ygs~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LAk~~f~p~K~FSIDrVFRNEtvD-aTHLAEFHQVEGvia 364 (483)
T KOG2784|consen 287 HEQG-GYGSIGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLAKKGFKPAKYFSIDRVFRNETVD-ATHLAEFHQVEGVIA 364 (483)
T ss_pred HhcC-CcCCcccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHHhCCCCcccccchhhhhhccccc-hHHHHHHhhhceeee
Confidence 4211 011111222222 2455544445555566 5899999999999997 899999999999998
Q ss_pred cC--CHHHHHHHHHHHHHHH
Q 012426 276 FA--DLKDDMACATAYLQYV 293 (464)
Q Consensus 276 ~~--~~~dlm~~~e~li~~i 293 (464)
.. ++-|+|.++++++..+
T Consensus 365 d~gltLgdLig~l~~ff~~l 384 (483)
T KOG2784|consen 365 DKGLTLGDLIGILMEFFTKL 384 (483)
T ss_pred cCCCcHHHHHHHHHHHHhcc
Confidence 86 5999999999988654
|
|
| >PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.3e-09 Score=81.54 Aligned_cols=74 Identities=26% Similarity=0.465 Sum_probs=60.9
Q ss_pred EEEEEEEeee-ecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEE
Q 012426 32 IVVAGWVRTL-RAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (464)
Q Consensus 32 V~v~GwV~~i-R~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~ 110 (464)
|+|+|||.++ |..++++|+.|+|++| .+|+++... ......+. |..|++|.|+|++...+.+ +++|.+++++
T Consensus 1 V~v~G~V~~~~~~~~~~~~~~l~D~tg--~i~~~~~~~-~~~~~~~~--l~~g~~v~v~G~v~~~~~~--~~~l~~~~i~ 73 (75)
T PF01336_consen 1 VTVEGRVTSIRRSGGKIVFFTLEDGTG--SIQVVFFNE-EYERFREK--LKEGDIVRVRGKVKRYNGG--ELELIVPKIE 73 (75)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEETH-HHHHHHHT--S-TTSEEEEEEEEEEETTS--SEEEEEEEEE
T ss_pred CEEEEEEEEEEcCCCCEEEEEEEECCc--cEEEEEccH-HhhHHhhc--CCCCeEEEEEEEEEEECCc--cEEEEECEEE
Confidence 7899999999 7779999999999997 599999872 11122456 9999999999999998754 3999999998
Q ss_pred EE
Q 012426 111 LV 112 (464)
Q Consensus 111 vl 112 (464)
+|
T Consensus 74 ~l 75 (75)
T PF01336_consen 74 IL 75 (75)
T ss_dssp EE
T ss_pred EC
Confidence 76
|
The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A .... |
| >PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.2e-10 Score=115.11 Aligned_cols=146 Identities=14% Similarity=0.117 Sum_probs=96.6
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEe-CceEeecCCCCCCCCceeeecCCCcccccCC---C----------CCCCCCC
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWIS-SPIITASDCEGAGEQFCVTTLIPSSREAAES---P----------VDAIPKT 210 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~-TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~---~----------~~~~~~~ 210 (464)
..-+..-.+++..+|++|.+.||.|+. .|.+.+.-+ ....+|..++|++++.|++.. | ++++..+
T Consensus 217 ~G~~HPl~~~~~ei~~if~~mGF~e~~~g~~ves~f~-NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~erVk~~ 295 (492)
T PLN02853 217 GGHLHPLLKVRQQFRKIFLQMGFEEMPTNNFVESSFW-NFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVERVKTV 295 (492)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEecCCCCeechhh-hhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHHHHHH
Confidence 345566677889999999999999994 566655444 467788777777776555221 1 2233334
Q ss_pred CCCCccccccccCcccccccchhHHHHH---------Hh----hc--cCceEEEccccccCCCCCccccccchhccceec
Q 012426 211 KDGLIDWSQDFFEKPAFLTVSGQLNAET---------YA----TA--LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELA 275 (464)
Q Consensus 211 ~~~~~~~~~~~f~~~~yL~~Spql~lql---------l~----~g--~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a 275 (464)
|+.+. +...-|+.+|-...|..+-||. |. .+ =-|+|.||+|||+|..| .+|+|||+|+|.-+.
T Consensus 296 He~G~-~gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~fsigrVfR~d~iD-atH~~eFhQ~EG~vv 373 (492)
T PLN02853 296 HESGG-YGSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQKGFKPKRYFSIDRVFRNEAVD-RTHLAEFHQVEGLVC 373 (492)
T ss_pred HhcCC-CCccccccccccchhcccccCCCCCHHHHHHHHHhhccCCCCcEEEeccceecCCCCC-cccCccceeEEEEEE
Confidence 42110 1112344444444444444431 11 11 13899999999999996 899999999999887
Q ss_pred cC--CHHHHHHHHHHHHHHH
Q 012426 276 FA--DLKDDMACATAYLQYV 293 (464)
Q Consensus 276 ~~--~~~dlm~~~e~li~~i 293 (464)
.. ++.+++.+++++++.+
T Consensus 374 d~~~t~~~L~g~l~~f~~~l 393 (492)
T PLN02853 374 DRGLTLGDLIGVLEDFFSRL 393 (492)
T ss_pred eCCCCHHHHHHHHHHHHHHc
Confidence 65 6899998888887654
|
|
| >TIGR02367 PylS pyrrolysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-08 Score=104.95 Aligned_cols=121 Identities=21% Similarity=0.305 Sum_probs=79.7
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccc--c
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF--F 222 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--f 222 (464)
..-....+.+.+.+|++|...||.||.||+|+...- -+.|...... +...+. +
T Consensus 236 iG~~~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~---~E~m~~~~g~----------------------eI~n~Iyk~ 290 (453)
T TIGR02367 236 EDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEY---IERMGIDNDT----------------------ELSKQIFRV 290 (453)
T ss_pred cCcccHHHHHHHHHHHHHHHCCCEEEECCeecchHH---HHhhcCccCC----------------------cccccceEe
Confidence 344566789999999999999999999999973210 0111000000 000001 2
Q ss_pred Ccccccc--cchhHHHHHHh-----hccCceEEEccccccCCCCCccccccchhccceeccC--CHHHHHHHHHHHHH
Q 012426 223 EKPAFLT--VSGQLNAETYA-----TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQ 291 (464)
Q Consensus 223 ~~~~yL~--~Spql~lqll~-----~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~ 291 (464)
+...+|+ ..|+|+.-+.. ..--|+|+||+|||+|.. +.+|+.||+|++++.+.. ++.|+..++.++++
T Consensus 291 ee~lvLRPdLTPsLaR~La~N~~~l~~PqKIFEIGkVFR~E~~-~~thlREF~QL~~eIaG~~atfaDlealL~e~Lr 367 (453)
T TIGR02367 291 DKNFCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESD-GKEHLEEFTMLNFCQMGSGCTRENLEAIIKDFLD 367 (453)
T ss_pred cCceEecccCHHHHHHHHHHhhhhccCCeeEEEEcCeEecCCC-CCCCcCeEEEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 3345677 67787753321 113499999999999988 489999999999999876 47777765554443
|
PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase. |
| >PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.9e-08 Score=105.50 Aligned_cols=146 Identities=14% Similarity=0.097 Sum_probs=94.9
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCC---C------------CCCCCC
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAES---P------------VDAIPK 209 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~---~------------~~~~~~ 209 (464)
...+..-.+++..+|++|.+.||.|+.+|...-+.......+|..+.|+++..|++.. | +++++.
T Consensus 225 ~g~~HPl~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~~~p~~~~~~Vk~ 304 (494)
T PTZ00326 225 GGNLHPLLKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDDDYVERVKK 304 (494)
T ss_pred CCCCChHHHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcCccccccccCcHHHHHHHHH
Confidence 4455666788899999999999999998855555555677888888888776655221 1 223334
Q ss_pred CCCCCccccccccCcccccccchhHHH---------HHHhh--------c---cCceEEEccccccCCCCCccccccchh
Q 012426 210 TKDGLIDWSQDFFEKPAFLTVSGQLNA---------ETYAT--------A---LSNVYTFGPTFRAENSNTSRHLAEFWM 269 (464)
Q Consensus 210 ~~~~~~~~~~~~f~~~~yL~~Spql~l---------qll~~--------g---~~rVfeI~~~FR~E~~~t~rHl~EFtm 269 (464)
+|+.+. +...-|+.+|-...|..+-| ++|.. + =-|+|+||+|||+|..| .+|+|||+|
T Consensus 305 ~He~G~-~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~D-atH~~eFhQ 382 (494)
T PTZ00326 305 VHEVGG-YGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETLD-ATHLAEFHQ 382 (494)
T ss_pred HhccCC-cCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCCC-CCcCceeEE
Confidence 442110 11122333333333333322 22221 1 24899999999999996 899999999
Q ss_pred ccceeccCC--HHHHHHHHHHHHHH
Q 012426 270 IEPELAFAD--LKDDMACATAYLQY 292 (464)
Q Consensus 270 lE~e~a~~~--~~dlm~~~e~li~~ 292 (464)
+|..+...+ +.+++.++.++++.
T Consensus 383 ~Eg~vi~~~~s~~~L~~~l~~f~~~ 407 (494)
T PTZ00326 383 VEGFVIDRNLTLGDLIGTIREFFRR 407 (494)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 999998865 67777766665544
|
|
| >PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.5e-08 Score=95.84 Aligned_cols=130 Identities=16% Similarity=0.184 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc--Ccc
Q 012426 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF--EKP 225 (464)
Q Consensus 148 ~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f--~~~ 225 (464)
...-+.+.+.+|++|...||.||.+|.+.+.... ... .+-+..|++++..+..-. +...- ...
T Consensus 16 ~hp~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~n-FD~------Ln~p~dHpaR~~~Dtfyi--------~~p~~~~~~~ 80 (247)
T PF01409_consen 16 LHPITKFIREIRDIFVGMGFQEVEGPEVESEFYN-FDA------LNIPQDHPARDMQDTFYI--------SNPYSAEEDY 80 (247)
T ss_dssp TSHHHHHHHHHHHHHHCTTSEEESTTSEEEHHHH-TGG------GTSTTTSCGGCGTTSEBS--------CSSSBCECSS
T ss_pred CCHHHHHHHHHHHHHHHCCCeEeeCCeEEeeHHH-HHh------hCcCCCccccccccceee--------eccccccchh
Confidence 3445677899999999999999999999764321 111 222222333321100000 00000 233
Q ss_pred ccccc--chhHHHHHHh---hccCceEEEccccccCCCCCccccccchhccceeccC--CHHHHHHHHHHHHHHHH
Q 012426 226 AFLTV--SGQLNAETYA---TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYVV 294 (464)
Q Consensus 226 ~yL~~--Spql~lqll~---~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i~ 294 (464)
.-|++ ||-+. +.|. ..=-|+|+||+|||+|..| .+|+|||+|+|.-.+.. ++.++...++.++++++
T Consensus 81 ~vLRThts~~~~-~~l~~~~~~p~kif~iG~VyR~D~~D-~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lf 154 (247)
T PF01409_consen 81 SVLRTHTSPGQL-RTLNKHRPPPIKIFEIGKVYRRDEID-ATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELF 154 (247)
T ss_dssp EEE-SSTHHHHH-HHHTTTSHSSEEEEEEEEEESSSCSB-SSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHH-HHHHHhcCCCeEEEecCceEecCCcc-cccCccceeEeeEEEecccchhHHHHHHHHHHHHHh
Confidence 33443 34222 4441 2347999999999999996 89999999999998876 58999988888887764
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B .... |
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-08 Score=108.17 Aligned_cols=149 Identities=13% Similarity=0.224 Sum_probs=97.4
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCC---CC---------CCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAES---PV---------DAIPKT 210 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~---~~---------~~~~~~ 210 (464)
....-...+..++..+|+.|...||.||.||.+.+.-+. ...+|+.+.|+++..|+... |- +++..+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~n-fd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~ 305 (489)
T PRK04172 227 IYPGKKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWN-FDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEV 305 (489)
T ss_pred CCCCCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcc-cccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHH
Confidence 445667789999999999999999999999999887664 67789888887765544211 10 111111
Q ss_pred CC-CC----cccccccc---CcccccccchhHHH-HHHh-hcc--CceEEEccccccCCCCCccccccchhccceeccC-
Q 012426 211 KD-GL----IDWSQDFF---EKPAFLTVSGQLNA-ETYA-TAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA- 277 (464)
Q Consensus 211 ~~-~~----~~~~~~~f---~~~~yL~~Spql~l-qll~-~g~--~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~- 277 (464)
|+ |. ..+-.+|- ++..-|+..---.. ++++ .+. -|+|+||+|||+|..+ ..|++||+|+++.+.+.
T Consensus 306 he~g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~~~p~rlFeiGrVFR~e~~d-~~~l~Ef~ql~~~i~G~~ 384 (489)
T PRK04172 306 HEHGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTID-ATHLPEFYQLEGIVMGED 384 (489)
T ss_pred HhccCCCCCccccCCcchhhhhccccccCChHHHHHHHHhcCCCCeEEEEecceEcCCCCC-cccCCchheEEEEEEeCC
Confidence 21 11 11100110 12334443332222 4443 222 4899999999999985 78899999999999986
Q ss_pred -CHHHHHHHHHHHHHHH
Q 012426 278 -DLKDDMACATAYLQYV 293 (464)
Q Consensus 278 -~~~dlm~~~e~li~~i 293 (464)
++.+++.++++++..+
T Consensus 385 ~~f~elkg~l~~ll~~l 401 (489)
T PRK04172 385 VSFRDLLGILKEFYKRL 401 (489)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 5778887777777543
|
|
| >COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.8e-08 Score=96.98 Aligned_cols=129 Identities=14% Similarity=0.146 Sum_probs=88.3
Q ss_pred hhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcc
Q 012426 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKP 225 (464)
Q Consensus 146 ~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 225 (464)
.-...-..++..++++|.+.||.+++.|.+.+.. -....+|..++|+++..|++ =|++..
T Consensus 108 G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE~d~-~NFDaLn~P~dHPARdmqDT-------------------Fy~~~~ 167 (335)
T COG0016 108 GSLHPLTQTIEEIEDIFLGMGFTEVEGPEIETDF-YNFDALNIPQDHPARDMQDT-------------------FYLKDD 167 (335)
T ss_pred CCcChHHHHHHHHHHHHHHcCceeccCCcccccc-cchhhhcCCCCCCcccccce-------------------EEEcCC
Confidence 3345556788999999999999999999555543 34566676666665433321 122211
Q ss_pred ---ccc-ccchhHHHHHHhhc---cCceEEEccccccCCCCCccccccchhccceeccC--CHHHHHHHHHHHHHHHHH
Q 012426 226 ---AFL-TVSGQLNAETYATA---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYVVR 295 (464)
Q Consensus 226 ---~yL-~~Spql~lqll~~g---~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i~~ 295 (464)
.-| ++....--+.|... =-|+|.+|+|||+|..| .+|+|||+|+|.-.... ++.+|+.+++++++.++.
T Consensus 168 ~~~~lLRTHTs~vq~R~l~~~~~~P~k~~~~grvyR~D~~D-aTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~~fg 245 (335)
T COG0016 168 REKLLLRTHTSPVQARTLAENAKIPIKIFSPGRVYRNDTVD-ATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKKFFG 245 (335)
T ss_pred CCceeecccCcHhhHHHHHhCCCCCceEecccceecCCCCC-cccchheeeeEEEEEeCCccHHHHHHHHHHHHHHhcC
Confidence 122 12222323444433 45899999999999996 89999999999876665 588999999998887753
|
|
| >cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.5e-07 Score=88.42 Aligned_cols=120 Identities=14% Similarity=0.226 Sum_probs=78.6
Q ss_pred HHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCc--cccccc
Q 012426 153 ALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK--PAFLTV 230 (464)
Q Consensus 153 ~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~--~~yL~~ 230 (464)
++.+.+|++|...||.||.|+.+++...+ .+.|......+ .. .. + +.-.... -.+|++
T Consensus 5 ~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~--~~~~~~~~~~~-----~~----~~-----~----~~v~l~NP~~~~LR~ 64 (218)
T cd00496 5 KVIEEIEDIFVSMGFTEVEGPEVETDFYN--FDALNIPQDHP-----AR----DM-----Q----DTFYINDPARLLLRT 64 (218)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcccccchh--hhhcCCCCCCc-----cc----cc-----C----ceEEECCCceEEEec
Confidence 45678999999999999999999876311 11111100000 00 00 0 0000011 245655
Q ss_pred chhHHH-HHHhh--ccCceEEEccccccCCCCCccccccchhccceeccC--CHHHHHHHHHHHHHHH
Q 012426 231 SGQLNA-ETYAT--ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 293 (464)
Q Consensus 231 Spql~l-qll~~--g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i 293 (464)
|-=--+ +.++. .--|+||||+|||+++. +..|+|||+||++.+++. |+.+++..+|.++..+
T Consensus 65 sLlp~LL~~l~~N~~~~~lFEiG~Vf~~~~~-~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~l 131 (218)
T cd00496 65 HTSAVQARALAKLKPPIRIFSIGRVYRNDEI-DATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKEL 131 (218)
T ss_pred cCcHHHHHHHHhcCCCeeEEEEcCeEECCCC-CCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 543333 55554 56799999999999876 368899999999999998 8999999999988644
|
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. |
| >PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.2e-07 Score=95.29 Aligned_cols=126 Identities=13% Similarity=0.122 Sum_probs=84.2
Q ss_pred hhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccc-cCcc
Q 012426 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF-FEKP 225 (464)
Q Consensus 147 ~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-f~~~ 225 (464)
....-+.+...+|++|...||.|+.+|.|++.... ...+. -...|++++.- ..| ....
T Consensus 106 ~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes~~~N-FdaLn------~P~dHPaR~~~--------------DTfyI~~~ 164 (339)
T PRK00488 106 SLHPITQTIEEIEDIFVGMGFEVAEGPEIETDYYN-FEALN------IPKDHPARDMQ--------------DTFYIDDG 164 (339)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEeCCccccHHHH-HHHhC------CCCCCcccccC--------------ceEEEcCC
Confidence 34555788899999999999999999999763221 11122 11223333210 012 2222
Q ss_pred ccc--ccchhHHHHHHhhc-c-CceEEEccccccCCCCCccccccchhccceeccC--CHHHHHHHHHHHHHHHHH
Q 012426 226 AFL--TVSGQLNAETYATA-L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYVVR 295 (464)
Q Consensus 226 ~yL--~~Spql~lqll~~g-~-~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i~~ 295 (464)
.-| ++||-+ ++.|... . -|+|++|+|||++..| .+|.|+|+|+|.-++.. ++.++...++.+++.++.
T Consensus 165 ~lLRThTSp~q-ir~L~~~~~Pirif~~G~VyR~D~~D-atH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~fg 238 (339)
T PRK00488 165 LLLRTHTSPVQ-IRTMEKQKPPIRIIAPGRVYRNDSDD-ATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFFG 238 (339)
T ss_pred ceeeccCcHHH-HHHHHhcCCCeEEEEeeeEEEcCCCC-cccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHcC
Confidence 333 345543 2434333 2 3899999999999985 89999999999987775 699999999988888764
|
|
| >PTZ00213 asparagine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.4e-06 Score=81.69 Aligned_cols=247 Identities=16% Similarity=0.155 Sum_probs=139.0
Q ss_pred hhhHHHHHHHHHHHHhhh-----CCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc-c
Q 012426 147 VARVRNALAYATHKFFQE-----NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ-D 220 (464)
Q Consensus 147 ~~~~rs~i~~~~r~ff~~-----~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 220 (464)
.++.....+..+++||.. .+.+.|..|++....++-+.++=-+.. || .++. +
T Consensus 7 ~~~~~q~aI~~iK~~F~~~L~~~LnL~rVsaPLfv~~~~GlnDnLnG~Er-----------pV-----------~f~~k~ 64 (348)
T PTZ00213 7 AYIDLQEQILKVKQIFSEALAKELNLIRVEAPLLAEVGDGTQDNLSGVEK-----------AV-----------QVHVKG 64 (348)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCeeEecCCeEEcCCCCcccCCCCeee-----------ee-----------EEecCC
Confidence 345556667777777765 599999999999876543322100000 00 0000 1
Q ss_pred ccCcccccccchhHHHHHHhh--cc---CceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHH
Q 012426 221 FFEKPAFLTVSGQLNAETYAT--AL---SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVR 295 (464)
Q Consensus 221 ~f~~~~yL~~Spql~lqll~~--g~---~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~ 295 (464)
+-+..+-..+|=--|+|+... +| +.+|+=.++.|.++.-+..|.-=--|-|||+....-+.-++++.+.++.+..
T Consensus 65 ~~~~~~evVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~ 144 (348)
T PTZ00213 65 IPNSVFEVVHSLAKWKRLTLGEHKFPVGEGIYTDMNALRVEEELDNIHSVYVDQWDWEMVIAPADRNLEYLKNTVRRLYA 144 (348)
T ss_pred CCCceeEEehhhHHHHHHHHHhcCCCCCceeeeccccccCCcccCccceeEeccccHHHhcCccccCHHHHHHHHHHHHH
Confidence 112333345566667775433 44 5699988888864433589987788999998886444445555555555544
Q ss_pred HHhhc-------Cc-------ccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHH
Q 012426 296 YILDN-------CK-------EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 361 (464)
Q Consensus 296 ~~~~~-------~~-------~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~ 361 (464)
.+... +. ++|.|+.. +.|+ ..+|.+|..| -
T Consensus 145 ~ik~te~~~~~~yp~l~~~Lp~~I~Fits-------qeL~----~~YP~lt~ke-------------------------R 188 (348)
T PTZ00213 145 AIRKTEEAICNEYPNLKRILPKEITFLHT-------EHLL----KMYPNLSPKE-------------------------R 188 (348)
T ss_pred HHHHHHHHHHHHchhhhhcCCCceEEecH-------HHHH----HHCCCCCHHH-------------------------H
Confidence 44321 11 11111110 1111 1234444433 2
Q ss_pred HHHhhhhcccCCCeeeee-------------------------------CCCC---CcccccccCCCCCceeeEEEee--
Q 012426 362 ERYLTEEAFGGCPVIVSD-------------------------------YPKE---IKAFYMRQNDDGRTVAAMDMLV-- 405 (464)
Q Consensus 362 e~~l~e~~~~~~p~fI~~-------------------------------yP~~---~~pfy~~~~~d~~~~~~fdl~~-- 405 (464)
|..++..+ ..|||+. ||.. +.|.... .-.+=|+++
T Consensus 189 E~~i~ke~---gaVFi~~IG~~L~~G~~Hd~RApDYDDW~t~~~~~~~~~~~~~~~~~~~~~~------~gLNGDilvw~ 259 (348)
T PTZ00213 189 EREIVKKY---GAVFLIGIGCKLSSGDTHDLRAPDYDDWSSPVSASKIGFPTADPTMNSLMSL------QGLNGDILVYN 259 (348)
T ss_pred HHHHHHHh---CcEEEEeccCcCCCCCcCCCCCCCcccccccccccccccccccccccccccc------cCccceEEEec
Confidence 32333222 2333332 1111 1111111 112334433
Q ss_pred ----CCccccccCccccccHHHHHHHHHHcC-CCccchHHHHHHhhhh-------h--h---HhhhhcCCCCCCC
Q 012426 406 ----PRIGELIGGSQREERLEYLEGRLDELK-LNRDSYWWYLDLRHYG-------S--G---LVFILIKVTNFLN 463 (464)
Q Consensus 406 ----~GigEi~~G~~r~~d~~~l~~r~~~~g-~~~~~~~~yl~~~~~G-------~--g---L~mll~~~~~I~~ 463 (464)
.. .||.+|+.|. |++.+.++++..| .+...+.||+++ ..| . | |+|+|+|..+|.+
T Consensus 260 ~~l~~a-~ELSSmGiRV-d~esL~~Qlk~~g~~dr~~l~~h~~l-l~g~LP~TiGGGIGqsRL~M~LL~k~HIgE 331 (348)
T PTZ00213 260 PVLDDV-LELSSMGIRV-DAEALRRQLEITNNTDRLKCMWHQML-LNGELPQTIGGGIGQSRLCMFMLRKKHIGE 331 (348)
T ss_pred hhcCce-eecCCcceEE-cHHHHHHHHHHcCCCccccCHHHHHH-HcCCCCCcccccccHHHHHHHHhCcchhcc
Confidence 34 5999999999 9999999999999 688899999994 443 2 3 9999999999986
|
|
| >PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.7e-07 Score=82.20 Aligned_cols=116 Identities=23% Similarity=0.280 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhh-hCCcEEEeCceEeecCC-CC-------CCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccc
Q 012426 150 VRNALAYATHKFFQ-ENGFIWISSPIITASDC-EG-------AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (464)
Q Consensus 150 ~rs~i~~~~r~ff~-~~gF~EV~TP~L~~~~~-eg-------~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (464)
++++|.+.+++.+. +.||.||.||.|.+... +. ...+|.++..+
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~--------------------------- 53 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRG--------------------------- 53 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETT---------------------------
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeecc---------------------------
Confidence 47899999999999 99999999999998542 21 12344432110
Q ss_pred ccCcccccccchhHHH-HHHhh-c------c-CceEEEccccccCCCC--CccccccchhccceeccCCHHHHHHHHHHH
Q 012426 221 FFEKPAFLTVSGQLNA-ETYAT-A------L-SNVYTFGPTFRAENSN--TSRHLAEFWMIEPELAFADLKDDMACATAY 289 (464)
Q Consensus 221 ~f~~~~yL~~Spql~l-qll~~-g------~-~rVfeI~~~FR~E~~~--t~rHl~EFtmlE~e~a~~~~~dlm~~~e~l 289 (464)
+...+|+.+.+... .++.. . + =++|++|+|||+|... +-..+-||+|.|++....+ ++..+..+++
T Consensus 54 --~~~~~L~pt~~~~~~~~~~~~~~~~~~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~-~~~~~~~~~~ 130 (173)
T PF00587_consen 54 --DEEYCLRPTSEPGIYSLFKNEIRSSYRDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP-EQSEEEFEEL 130 (173)
T ss_dssp --TEEEEE-SSSHHHHHHHHHHHEEBHGGGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS-HHHHHHHHHH
T ss_pred --cccEEeccccccceeeeecceeeeccccCCeEEeecccccccccccccccceeeEeeeeceEEEeCC-cccHHHHHHH
Confidence 13457777766655 44332 1 2 2899999999999432 3567789999999997777 7877777777
Q ss_pred HHHHHH
Q 012426 290 LQYVVR 295 (464)
Q Consensus 290 i~~i~~ 295 (464)
+..+..
T Consensus 131 ~~~~~~ 136 (173)
T PF00587_consen 131 LELYKE 136 (173)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 755433
|
seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B .... |
| >cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-05 Score=78.30 Aligned_cols=257 Identities=14% Similarity=0.128 Sum_probs=147.0
Q ss_pred HHHHHHHhhh-----CCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc-cccCccccc
Q 012426 155 AYATHKFFQE-----NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ-DFFEKPAFL 228 (464)
Q Consensus 155 ~~~~r~ff~~-----~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~f~~~~yL 228 (464)
+..+++||.. .+.+.|..|+++...++-+.++=-+.. || .++. ++-+..+-.
T Consensus 4 I~~iK~~F~~~L~~~LnL~rvsaPlfv~~~sGlnD~LnG~E~-----------pV-----------~f~~k~~~~~~~ei 61 (309)
T cd00645 4 IKFIKDFFQDNLAKELNLIRVSAPLFVEKGSGLNDNLNGVEK-----------PV-----------SFKVKALPDATLEV 61 (309)
T ss_pred HHHHHHHHHHHHHHHhCeEEecCCeEEecCCCCccCCCCccc-----------ce-----------EeecCCCCCceeEE
Confidence 4555566644 699999999999876552221100000 00 0000 111233334
Q ss_pred ccchhHHHHHHh--hcc---CceEEEcccccc-CCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCc
Q 012426 229 TVSGQLNAETYA--TAL---SNVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK 302 (464)
Q Consensus 229 ~~Spql~lqll~--~g~---~rVfeI~~~FR~-E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~ 302 (464)
-+|=--|+|+.. -|| +.+|+=..+.|. |+. +..|.-=--|-|||.....-+.-++++.+.++.+...+...-
T Consensus 62 VhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~l-dn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~ik~te- 139 (309)
T cd00645 62 VHSLAKWKRLALARYGFSLGEGLYTDMNAIRPDEDL-DNIHSIYVDQWDWEKVISKGERNLETLKETVNKIYKAIKETE- 139 (309)
T ss_pred eeehHHHHHHHHHhcCCCCCceeccCCccccCCccc-CccceeEeccccHHhhcCccccCHHHHHHHHHHHHHHHHHHH-
Confidence 556666777543 245 568998888886 565 589987788899998876555556666666666555543220
Q ss_pred ccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCC
Q 012426 303 EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPK 382 (464)
Q Consensus 303 ~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~ 382 (464)
..+ ...+ ..+...+..++.=||-+|..+++ | . .=.++-|..++..+ ..|||+.-=.
T Consensus 140 ~~~--~~~y------~~~~~~Lp~~i~FitsqeL~~~Y---------P-~---l~~keRE~~i~ke~---gaVFi~~IG~ 195 (309)
T cd00645 140 LEV--NEKY------PQLEPILPEEITFITSQELEDRY---------P-D---LTPKEREDAICKEH---GAVFIIGIGG 195 (309)
T ss_pred HHH--HHHc------hhhhhcCCCceEEecHHHHHHHC---------C-C---CCHHHHHHHHHHHh---CcEEEEeccC
Confidence 000 0000 01112222222234555544432 1 1 11335566666654 5788876332
Q ss_pred CCcccccccC----CCCCceeeEEEee------CCccccccCccccccHHHHHHHHHHcC-CCccchHHHHHHhhhhh--
Q 012426 383 EIKAFYMRQN----DDGRTVAAMDMLV------PRIGELIGGSQREERLEYLEGRLDELK-LNRDSYWWYLDLRHYGS-- 449 (464)
Q Consensus 383 ~~~pfy~~~~----~d~~~~~~fdl~~------~GigEi~~G~~r~~d~~~l~~r~~~~g-~~~~~~~~yl~~~~~G~-- 449 (464)
.++-= ++|+ +-.....+=|+++ ..+ ||.+|+.|.+. +.+.++++..| .+...+.| ++++..|.
T Consensus 196 ~L~~g-~~Hd~RapDYDDW~LNGDil~w~~~l~~a~-ELSSmGiRVde-e~L~~Ql~~~g~~dr~~l~~-h~~ll~g~LP 271 (309)
T cd00645 196 KLSDG-KKHDGRAPDYDDWTLNGDILVWNPVLQRAF-ELSSMGIRVDE-ESLQKQLKLAGDEDRLELPF-HKMLLNGELP 271 (309)
T ss_pred cCCCC-CcCCCCCCCCcCccccceEEEEchhcCcee-eecCcceEecH-HHHHHHHHHcCCCccccCHH-HHHHHcCCCC
Confidence 22111 1121 1112334444444 477 99999999999 99999999998 67778888 88877652
Q ss_pred -------h---HhhhhcCCCCCCC
Q 012426 450 -------G---LVFILIKVTNFLN 463 (464)
Q Consensus 450 -------g---L~mll~~~~~I~~ 463 (464)
| |+|+|+|..+|.+
T Consensus 272 ~TiGgGIGqsRL~M~LL~k~HIgE 295 (309)
T cd00645 272 QTIGGGIGQSRLCMFLLQKAHIGE 295 (309)
T ss_pred ccccccccHHHHHHHHhccchhcc
Confidence 3 9999999999986
|
AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB. |
| >PLN02788 phenylalanine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.3e-07 Score=90.91 Aligned_cols=120 Identities=18% Similarity=0.275 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhhhC---CcEEEe--CceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc-Cc
Q 012426 151 RNALAYATHKFFQEN---GFIWIS--SPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF-EK 224 (464)
Q Consensus 151 rs~i~~~~r~ff~~~---gF~EV~--TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-~~ 224 (464)
-+.+...|+++|.+. ||.+++ .|+. +. ......++...+|++++.+ ..|| +.
T Consensus 70 l~~~~~~i~~~f~~~~~~gf~~~~~~~~iv-~~-~~NFD~L~~P~dHPaR~~~--------------------DTfy~~~ 127 (402)
T PLN02788 70 LGILKNAIYDYFDENYSNKFKKFDDLSPIV-ST-KQNFDDVLVPPDHVSRSYN--------------------DTYYVDA 127 (402)
T ss_pred HHHHHHHHHHHHhhcccCCcEEecCCCCcc-ch-hhhhhhhCCCCCCCccCcc--------------------ceEEecC
Confidence 355667888899887 999999 4544 33 3444555534444432211 1233 33
Q ss_pred ccccc--cch-hHHHHHHhhccCceEEEccccccCCCCCccccccchhccceecc--------------CCHHHHHHHHH
Q 012426 225 PAFLT--VSG-QLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--------------ADLKDDMACAT 287 (464)
Q Consensus 225 ~~yL~--~Sp-ql~lqll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~--------------~~~~dlm~~~e 287 (464)
..-|+ +|+ |. ++|..+-.|++.+|+|||++..| .+|.|+|+|+|.-+.+ .+..++...+|
T Consensus 128 ~~lLRTHTSa~q~--~~l~~~~~~~~~~g~VyRrD~iD-~tH~p~FhQ~EG~~v~~~~~~~~~~~~~~~~~~~dLKg~Le 204 (402)
T PLN02788 128 QTVLRCHTSAHQA--ELLRAGHTHFLVTGDVYRRDSID-ATHYPVFHQMEGVRVFSPEEWEASGLDGTDLAAEDLKKTLE 204 (402)
T ss_pred CccccCCCcHHHH--HHHHhCCCcEEEEeeEeecCCCC-cccCccceeEEEEEEecccccccccccccccCHHHHHHHHH
Confidence 33342 233 22 55556677999999999999996 8999999999998886 34678888888
Q ss_pred HHHHHHHH
Q 012426 288 AYLQYVVR 295 (464)
Q Consensus 288 ~li~~i~~ 295 (464)
.+++.++.
T Consensus 205 ~l~~~lfg 212 (402)
T PLN02788 205 GLARHLFG 212 (402)
T ss_pred HHHHHhcC
Confidence 88887754
|
|
| >PRK05425 asparagine synthetase AsnA; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-05 Score=78.77 Aligned_cols=262 Identities=15% Similarity=0.119 Sum_probs=150.3
Q ss_pred hHHHHHHHHHHHHhhh-----CCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc-ccc
Q 012426 149 RVRNALAYATHKFFQE-----NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ-DFF 222 (464)
Q Consensus 149 ~~rs~i~~~~r~ff~~-----~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~f 222 (464)
+.....++.++++|.. .+.+.|..|+++...++-+.++=-+.. || .++. +.-
T Consensus 9 ~~tq~aI~~iK~~F~~~L~~~LnL~rvsaPlfv~~~sGlnD~LnG~E~-----------pV-----------~F~~k~~~ 66 (327)
T PRK05425 9 IETQQAISFVKDFFERQLAKKLNLIRVSAPLFVRVGSGLNDNLNGVEK-----------PV-----------SFKVKDLP 66 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCeeEecCCeEEcCCCCcccCCCCeec-----------ce-----------EeeccCCC
Confidence 3344555666666654 699999999999876553332200000 00 0000 111
Q ss_pred CcccccccchhHHHHHHhh--cc---CceEEEcccccc-CCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHH
Q 012426 223 EKPAFLTVSGQLNAETYAT--AL---SNVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRY 296 (464)
Q Consensus 223 ~~~~yL~~Spql~lqll~~--g~---~rVfeI~~~FR~-E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~ 296 (464)
+.++-..+|=--|+|+... +| +.+|+=..+.|. |+. +..|.-=--|-|||.....-+.-++++.+.++.+...
T Consensus 67 ~~~~eiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~l-d~~HS~yVDQWDWEkvI~~~~Rn~~~Lk~tV~~Iy~~ 145 (327)
T PRK05425 67 DATFEVVHSLAKWKRLALKRYGFSAGEGLYTDMNAIRPDEDL-DNTHSVYVDQWDWEKVIGKEERNLDYLKETVEKIYKA 145 (327)
T ss_pred CCeeEEEeehHHHHHHHHHhcCCCCCceeccCCccccCCccc-CcccceEeccccHHHhCCccccCHHHHHHHHHHHHHH
Confidence 2233345566666776443 55 468998888886 555 5899877888999988764555556666666665555
Q ss_pred HhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCee
Q 012426 297 ILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVI 376 (464)
Q Consensus 297 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~f 376 (464)
+...- ..+ ...+ + .+ +.+..++.=||-+|..+++ | . .=.++-|..++..+ ..||
T Consensus 146 ik~te-~~~--~~~y-~-----~~-~~Lp~~i~FitsqeL~~~Y---------P-~---l~~keRE~~i~ke~---gaVF 199 (327)
T PRK05425 146 IKATE-KAV--SKKY-P-----LL-PFLPEEITFITSQELEDRY---------P-D---LTPKEREDAIAKEY---GAVF 199 (327)
T ss_pred HHHHH-HHH--HHhC-c-----cc-ccCCCceEEecHHHHHHHC---------C-C---CCHHHHHHHHHHHh---CcEE
Confidence 43220 000 0000 0 00 1122222234445544432 1 1 11335566666654 5788
Q ss_pred eeeCCCCCcccccccC----CCCCceeeEEEee------CCccccccCccccccHHHHHHHHHHcC-CCccchHHHHHHh
Q 012426 377 VSDYPKEIKAFYMRQN----DDGRTVAAMDMLV------PRIGELIGGSQREERLEYLEGRLDELK-LNRDSYWWYLDLR 445 (464)
Q Consensus 377 I~~yP~~~~pfy~~~~----~d~~~~~~fdl~~------~GigEi~~G~~r~~d~~~l~~r~~~~g-~~~~~~~~yl~~~ 445 (464)
|+.-=..++-= ++|+ +-.....+=|+++ ..+ ||.+|+.|.+ ++.+.++++..| .+...+.||+++
T Consensus 200 i~~IG~~L~~g-~~Hd~RapDYDDW~LNGDilvw~~~l~~a~-ELSSmGiRVd-~e~L~~Qlk~~g~~dr~~l~~h~~l- 275 (327)
T PRK05425 200 LIGIGGKLSDG-KPHDGRAPDYDDWGLNGDILVWNPVLDDAF-ELSSMGIRVD-EEALKRQLKLTGDEDRLELEWHQAL- 275 (327)
T ss_pred EEeccCcCCCC-CcCCCCCCCCcCcccCceEEEEccccCcee-eecCcceEec-HHHHHHHHHHcCCCccccCHHHHHH-
Confidence 87633222110 1121 1112233344443 377 9999999999 999999999999 688899999999
Q ss_pred hhhh---------h---HhhhhcCCCCCCC
Q 012426 446 HYGS---------G---LVFILIKVTNFLN 463 (464)
Q Consensus 446 ~~G~---------g---L~mll~~~~~I~~ 463 (464)
..|. | |+|+|+|..+|.+
T Consensus 276 l~g~LP~TiGgGIGqsRL~M~LL~k~HIgE 305 (327)
T PRK05425 276 LNGELPLTIGGGIGQSRLCMLLLQKAHIGE 305 (327)
T ss_pred HhCCCCCcccccccHHHHHHHHhccchhcc
Confidence 5442 3 9999999999976
|
|
| >cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.7e-06 Score=83.49 Aligned_cols=101 Identities=20% Similarity=0.284 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-------CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccc
Q 012426 148 ARVRNALAYATHKFFQENGFIWISSPIITASDC-------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (464)
Q Consensus 148 ~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (464)
.+.|..+.+.+++.|.++||.||.||.|...+. +...++|.+.+.+
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~--------------------------- 54 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKG--------------------------- 54 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCC---------------------------
Confidence 367889999999999999999999999998542 1223455543211
Q ss_pred ccCcccccccchhHHH-HHHhh------ccCceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 221 FFEKPAFLTVSGQLNA-ETYAT------ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 221 ~f~~~~yL~~Spql~l-qll~~------g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
++.+.|+.-..... ++++. .--|+|++++|||+|... ..|..||+|+++|+-..+
T Consensus 55 --g~~l~LRpd~T~~iaR~~a~~~~~~~~p~k~~y~g~vfR~e~~~-~g~~re~~Q~g~Eiig~~ 116 (261)
T cd00773 55 --GRDLALRPDLTAPVARAVAENLLSLPLPLKLYYIGPVFRYERPQ-KGRYREFYQVGVEIIGSD 116 (261)
T ss_pred --CCEEEeCCCCcHHHHHHHHhcCccCCCCeEEEEEcCEEecCCCC-CCCccceEEeceeeeCCC
Confidence 23333432222222 33332 234899999999999884 678899999999987663
|
HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain. |
| >TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.29 E-value=4e-06 Score=83.73 Aligned_cols=126 Identities=12% Similarity=0.125 Sum_probs=79.8
Q ss_pred hhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccc
Q 012426 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPA 226 (464)
Q Consensus 147 ~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 226 (464)
.......+...+|++|...||.|+.||.+++.... ....+....|+++..++ .-+.....
T Consensus 70 ~~~p~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~-fd~l~~~~~hpar~~~d-------------------~~~l~d~~ 129 (294)
T TIGR00468 70 SLHPLTRVIDEIRDIFLGLGFTEEKGPEVETDFWN-FDALNIPQDHPARDMQD-------------------TFYIKDRL 129 (294)
T ss_pred CcCHHHHHHHHHHHHHHHCCCEEeeCCceeccHHH-HHHhCCCCCCcchhhcc-------------------ceeecCCc
Confidence 34445677889999999999999999999875211 01111111122110000 00111233
Q ss_pred ccccchhHHH-HHHhhcc---CceEEEccccccCCCCCccccccchhccceeccC--CHHHHHHHHHHHHHHH
Q 012426 227 FLTVSGQLNA-ETYATAL---SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 293 (464)
Q Consensus 227 yL~~Spql~l-qll~~g~---~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i 293 (464)
.|++|-=--+ +.+.... -|+|+||+|||++..+ .+|+|||+|+++-.... |+.|+...++.++..+
T Consensus 130 vLRtsl~p~ll~~l~~N~~~pirlFEiGrVfr~d~~d-~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~~l 201 (294)
T TIGR00468 130 LLRTHTTAVQLRTMEENEKPPIRIFSPGRVFRNDTVD-ATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFLKKM 201 (294)
T ss_pred ceecccHHHHHHHHHhcCCCCceEEEecceEEcCCCC-CccCChhhEEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4554443333 5555444 4999999999998874 79999999999987653 7888888888777543
|
Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment. |
| >cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.1e-05 Score=77.53 Aligned_cols=105 Identities=19% Similarity=0.177 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CC--CCC-----CCceeeecCCCcccccCCCCCCCCCCCCCCcccccc
Q 012426 149 RVRNALAYATHKFFQENGFIWISSPIITASD-CE--GAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (464)
Q Consensus 149 ~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~e--g~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (464)
+++.+|.+.+++.|.+.||.||.||.|.... .+ +.. ++|.+++.+. .
T Consensus 3 ~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~ 57 (235)
T cd00670 3 ALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGR-------------------------E 57 (235)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcc-------------------------c
Confidence 5788999999999999999999999999854 22 111 2333211000 0
Q ss_pred ccCcccccccchhHHH-HHHhh------cc-CceEEEccccccCCCCC--ccccccchhccceeccCC
Q 012426 221 FFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 221 ~f~~~~yL~~Spql~l-qll~~------g~-~rVfeI~~~FR~E~~~t--~rHl~EFtmlE~e~a~~~ 278 (464)
--+..++|+....... ++++. .+ -|+|++|+|||+|.... ..-.-||+|.|++....+
T Consensus 58 ~~~~~~~LrP~~~~~i~~~~~~~~~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~ 125 (235)
T cd00670 58 LRDTDLVLRPAACEPIYQIFSGEILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEP 125 (235)
T ss_pred ccCCeEEEecCCCHHHHHHHhccCccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCH
Confidence 0023445554444333 33322 12 38999999999998741 223469999999986654
|
This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.3e-06 Score=80.98 Aligned_cols=125 Identities=18% Similarity=0.104 Sum_probs=84.5
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC----CC-----CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC----EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~----eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
...-.+++.+|.+.+++.+.+.||.||.||.|...+. .| ..++|.++....
T Consensus 28 lP~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~-------------------- 87 (261)
T cd00778 28 RPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGL-------------------- 87 (261)
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCC--------------------
Confidence 3445789999999999999999999999999988532 11 234565532110
Q ss_pred ccccccccCcccccccchhHHH-HHHhh------cc-CceEEEccccccCCCCC--ccccccchhccceeccCCHHHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADLKDDMA 284 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spql~l-qll~~------g~-~rVfeI~~~FR~E~~~t--~rHl~EFtmlE~e~a~~~~~dlm~ 284 (464)
.-.+.+++|....+-.+ .+++. .+ =|+|++++|||+|..++ --=.-||+|.|.+..+.+.++..+
T Consensus 88 -----~~~~~~~~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~ 162 (261)
T cd00778 88 -----EELEEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEE 162 (261)
T ss_pred -----cccCCcEEEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHH
Confidence 00012455665554444 22221 12 37899999999998742 112349999999999999988888
Q ss_pred HHHHHHHHH
Q 012426 285 CATAYLQYV 293 (464)
Q Consensus 285 ~~e~li~~i 293 (464)
..++++...
T Consensus 163 ~~~~~~~~~ 171 (261)
T cd00778 163 EVLQILDLY 171 (261)
T ss_pred HHHHHHHHH
Confidence 888877543
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria. |
| >TIGR00442 hisS histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.8e-05 Score=82.42 Aligned_cols=105 Identities=17% Similarity=0.219 Sum_probs=69.3
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC--C---C-----CCCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC--E---G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~--e---g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
...-.+++..+...+++.|.++||.||.||+|...+. . . ..++|.+.+.+
T Consensus 10 ~p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~-------------------- 69 (397)
T TIGR00442 10 LPEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKG-------------------- 69 (397)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCC--------------------
Confidence 4456788999999999999999999999999977431 1 1 12344443211
Q ss_pred CccccccccCcccccccchhHHH-HHHhhc------cCceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 214 LIDWSQDFFEKPAFLTVSGQLNA-ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql~l-qll~~g------~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
++.+-|+.=.-... ++++.. --|+|++|+|||.|... ..|.-||+|+++|....+
T Consensus 70 ---------g~~l~LRpD~T~~iaR~~~~~~~~~~~p~r~~y~g~vfR~e~~~-~gr~ref~Q~g~eiig~~ 131 (397)
T TIGR00442 70 ---------GRSLTLRPEGTAPVARAVIENKLLLPKPFKLYYIGPMFRYERPQ-KGRYRQFHQFGVEVIGSD 131 (397)
T ss_pred ---------CCEEeecCCCcHHHHHHHHhcccccCCCeEEEEEcCeecCCCCC-CCcccceEEcCeeeeCCC
Confidence 23323322111111 333321 24899999999999885 456689999999987764
|
This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff. |
| >cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.5e-05 Score=76.52 Aligned_cols=118 Identities=18% Similarity=0.119 Sum_probs=77.2
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-C--C-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-e--g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
..-.+++.+|.+.+++.|.+.||.||.||+|..... . | ..++|.+++.
T Consensus 28 P~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~d~------------------------ 83 (255)
T cd00779 28 PLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDR------------------------ 83 (255)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEecC------------------------
Confidence 445788999999999999999999999999987321 1 1 2234544221
Q ss_pred ccccccCcccccccchhHHH-----HHHhh--ccC-ceEEEccccccCCCCCcc--ccccchhccceeccCCHHHHHHHH
Q 012426 217 WSQDFFEKPAFLTVSGQLNA-----ETYAT--ALS-NVYTFGPTFRAENSNTSR--HLAEFWMIEPELAFADLKDDMACA 286 (464)
Q Consensus 217 ~~~~~f~~~~yL~~Spql~l-----qll~~--g~~-rVfeI~~~FR~E~~~t~r--Hl~EFtmlE~e~a~~~~~dlm~~~ 286 (464)
-+++++|+.-.+-.+ +.+.. .+. |+|++++|||+|.....= =.-||+|.|.+..+.+-.+.....
T Consensus 84 -----~~~~l~LrPt~e~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~ 158 (255)
T cd00779 84 -----HGKEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETY 158 (255)
T ss_pred -----CCCeEEEecCCcHHHHHHHHhccccHhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHH
Confidence 123456655433322 21211 233 899999999999432210 235999999999887766666666
Q ss_pred HHHHH
Q 012426 287 TAYLQ 291 (464)
Q Consensus 287 e~li~ 291 (464)
++++.
T Consensus 159 ~~i~~ 163 (255)
T cd00779 159 EKMYQ 163 (255)
T ss_pred HHHHH
Confidence 66554
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes. |
| >cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.7e-05 Score=74.95 Aligned_cols=122 Identities=20% Similarity=0.144 Sum_probs=81.0
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-CCC--------CCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGA--------GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-eg~--------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
..-.+++.+|.+.+++.+.+.||.||.||.|..... .+. .+.|.++..+.
T Consensus 29 P~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~~~~~--------------------- 87 (264)
T cd00772 29 PLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAGD--------------------- 87 (264)
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEEEeCCC---------------------
Confidence 345688999999999999999999999999988432 111 23444432110
Q ss_pred cccccccCcccccccchhHHH-HHHhh------ccC-ceEEEccccccCCCCCcc---ccccchhccceeccCCHHHHHH
Q 012426 216 DWSQDFFEKPAFLTVSGQLNA-ETYAT------ALS-NVYTFGPTFRAENSNTSR---HLAEFWMIEPELAFADLKDDMA 284 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~Spql~l-qll~~------g~~-rVfeI~~~FR~E~~~t~r---Hl~EFtmlE~e~a~~~~~dlm~ 284 (464)
+=.+.+++|+...+-.+ .+... .+. |+|++++|||+|..+ .+ =.-||+|.|.+..+.+.++..+
T Consensus 88 ----~~~~~~l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r~-~~Gl~R~reF~~~e~~~~~~~~e~a~~ 162 (264)
T cd00772 88 ----EELEEDFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIRP-RFGFLRAREFIMKDGHSAHADAEEADE 162 (264)
T ss_pred ----CccCceEEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCCC-CCCcceeeEEEEeeeEEecCCHHHHHH
Confidence 00013456655555433 33222 233 899999999999653 22 2359999999987788888888
Q ss_pred HHHHHHHH
Q 012426 285 CATAYLQY 292 (464)
Q Consensus 285 ~~e~li~~ 292 (464)
.++.++..
T Consensus 163 e~~~~~~~ 170 (264)
T cd00772 163 EFLNMLSA 170 (264)
T ss_pred HHHHHHHH
Confidence 77777743
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >TIGR00669 asnA aspartate--ammonia ligase, AsnA-type | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00037 Score=68.61 Aligned_cols=265 Identities=14% Similarity=0.101 Sum_probs=148.3
Q ss_pred hhHHHHHHHHHHHHhhh-----CCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc-cc
Q 012426 148 ARVRNALAYATHKFFQE-----NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ-DF 221 (464)
Q Consensus 148 ~~~rs~i~~~~r~ff~~-----~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 221 (464)
++.....+..+++||.. .+.++|..|+++...++-+.++=-+.. || .++. +.
T Consensus 5 ~~~tq~aI~~iK~~F~~~L~~~L~L~rVsAPLfv~~~sGlnD~LnG~Er-----------pV-----------~f~~k~~ 62 (330)
T TIGR00669 5 FILQQQQISFVKSTFTQQLEERLGLIEVQGPILSQVGDGTQDNLSGREK-----------AV-----------QVKVKAI 62 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCeEEeccceEEcCCCCCcCCCCCeec-----------ce-----------EeecCCC
Confidence 45555667777787765 599999999999876543322100100 00 0000 01
Q ss_pred cCcccccccchhHHHHHHhh--cc---CceEEEcccccc-CCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHH
Q 012426 222 FEKPAFLTVSGQLNAETYAT--AL---SNVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVR 295 (464)
Q Consensus 222 f~~~~yL~~Spql~lqll~~--g~---~rVfeI~~~FR~-E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~ 295 (464)
-+..+-.-+|=--|+|+... || +.+|+=..+-|. |+.-+..|.-=--|-|||.....-+.-++++.+.++.+.+
T Consensus 63 ~~~~~evVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~De~~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~Iy~ 142 (330)
T TIGR00669 63 PDAQFEVVHSLAKWKRHTLARHDFSAGEGLFVHMKALRPDEDRLDPLHSVYVDQWDWEKVMPDGERNFAYLKSTVEAIYA 142 (330)
T ss_pred CCceeEEehhhHHHHHHHHHhcCCCCCceeeeccccccCCccccCccceeeeccccHHHhcCcccccHHHHHHHHHHHHH
Confidence 12333345566667776443 55 469998888886 5622489987778889998876455555556655555555
Q ss_pred HHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCe
Q 012426 296 YILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPV 375 (464)
Q Consensus 296 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~ 375 (464)
.+...- ..+ ...+ .+...+..++.-||-+|..+++ | . .=.++-|..++..+ ..|
T Consensus 143 ~ik~te-~~~--~~~y-------~l~~~Lp~~I~FitsqeL~~~Y---------P-~---lt~keRE~~i~ke~---gaV 196 (330)
T TIGR00669 143 AIRATE-AAV--SERF-------GLAPFLPDQIHFVHSEELVSRY---------P-D---LDSKGRERAICKEL---GAV 196 (330)
T ss_pred HHHHHH-HHH--HHhc-------CccccCCCceEEecHHHHHHHC---------C-C---CCHHHHHHHHHHHh---CcE
Confidence 543220 000 0000 0111121222223445543332 1 1 11335566666654 477
Q ss_pred eeeeCCCCC--------cc-ccc---ccCCCCCceeeEEEee------CCccccccCccccccHHHHHHHHHHcC-CCcc
Q 012426 376 IVSDYPKEI--------KA-FYM---RQNDDGRTVAAMDMLV------PRIGELIGGSQREERLEYLEGRLDELK-LNRD 436 (464)
Q Consensus 376 fI~~yP~~~--------~p-fy~---~~~~d~~~~~~fdl~~------~GigEi~~G~~r~~d~~~l~~r~~~~g-~~~~ 436 (464)
||+.-=..+ ++ =|. ...+++-.-.+=|+++ ..+ ||.+-+.|- |.+.+.++++..| .+..
T Consensus 197 Fi~~IG~~L~~G~~Hd~RApDYDDW~t~~~~~~~gLNGDilvw~~vl~~a~-ElSSMGIRV-d~~~L~~Qlk~~g~~dr~ 274 (330)
T TIGR00669 197 FLIGIGGKLSDGKPHDVRAPDYDDWTTPSELGYKGLNGDILVWNPVLGDAF-ELSSMGIRV-DEDALRHQLALTGDEDRL 274 (330)
T ss_pred EEEeccCcCCCCCcCCCCCCCcccccccccccccCcCceEEEEchhcCcee-eeecceeEE-CHHHHHHHHHHcCCCccc
Confidence 777532222 21 110 0011111124445554 366 888877776 5677889999988 7888
Q ss_pred chHHHHHHhhhh-------h--h---HhhhhcCCCCCCC
Q 012426 437 SYWWYLDLRHYG-------S--G---LVFILIKVTNFLN 463 (464)
Q Consensus 437 ~~~~yl~~~~~G-------~--g---L~mll~~~~~I~~ 463 (464)
.+.||+++ ..| . | |+|+|+|..+|.+
T Consensus 275 ~l~~h~el-l~g~LP~TiGGGIGqsRL~MfLL~k~HIgE 312 (330)
T TIGR00669 275 ELEWHQDL-LNGELPQTIGGGIGQSRLAMLLLQLKHIGE 312 (330)
T ss_pred cCHHHHHH-HcCCCCccccccccHHHHHHHHhccccccc
Confidence 99999999 544 2 3 9999999999986
|
The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer. |
| >PRK00037 hisS histidyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.9e-05 Score=80.21 Aligned_cols=104 Identities=17% Similarity=0.233 Sum_probs=69.3
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC------CC----CCCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EG----AGEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~------eg----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
...-.+.+..+...+++.|.++||.||.||++...+- +. ..++|.+.+.
T Consensus 14 ~p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~--------------------- 72 (412)
T PRK00037 14 LPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDK--------------------- 72 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcC---------------------
Confidence 4455788899999999999999999999999976431 11 1334443221
Q ss_pred CccccccccCcccccccc--hhHHHHHHhh---ccCceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 214 LIDWSQDFFEKPAFLTVS--GQLNAETYAT---ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~S--pql~lqll~~---g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
-++.+-|+.= |++. ++++. .--|+|++|+|||+|... ..|.-||+|+++|.-..+
T Consensus 73 --------~g~~l~LRpd~T~~~a-r~~~~~~~~p~r~~~~g~vfR~e~~~-~gr~ref~Q~g~ei~g~~ 132 (412)
T PRK00037 73 --------GGRSLTLRPEGTAPVV-RAVIEHKLQPFKLYYIGPMFRYERPQ-KGRYRQFHQFGVEVIGSD 132 (412)
T ss_pred --------CCCEEEecCCCcHHHH-HHHHhCCCCCeEEEEEcCccccCCCC-CCcccceEEcCeeeeCCC
Confidence 1222233211 2222 33332 235999999999999885 567789999999986654
|
|
| >TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II | Back alignment and domain information |
|---|
Probab=97.79 E-value=7.8e-05 Score=80.95 Aligned_cols=126 Identities=15% Similarity=0.123 Sum_probs=82.1
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-C-------CCCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E-------GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-e-------g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
.+..-.+++.+|.+.+|+.|.+.||.||.||.|.+..- . -+.++|.+++.
T Consensus 42 ~lP~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~dr---------------------- 99 (568)
T TIGR00409 42 WLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLKDR---------------------- 99 (568)
T ss_pred ECChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhcEEEecC----------------------
Confidence 44566889999999999999999999999999998431 1 12356665321
Q ss_pred ccccccccCcccccccchh-----HHHHHHhh--ccC-ceEEEccccccCCC-CCc-cccccchhccceeccCCHHHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSGQ-----LNAETYAT--ALS-NVYTFGPTFRAENS-NTS-RHLAEFWMIEPELAFADLKDDMA 284 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spq-----l~lqll~~--g~~-rVfeI~~~FR~E~~-~t~-rHl~EFtmlE~e~a~~~~~dlm~ 284 (464)
-+..++|+...| ++.+.+.+ .+. |+|+|+++||+|.- ... -=.-||+|.|.|....+..+...
T Consensus 100 -------~~~~l~LrPT~Ee~~t~~~~~~i~syr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~ 172 (568)
T TIGR00409 100 -------KGREFVLGPTHEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDA 172 (568)
T ss_pred -------CCCEEEEcCCCcHHHHHHHHHHHhhccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHH
Confidence 134455654322 22222222 233 89999999999942 111 02349999999998877666655
Q ss_pred HHHHHH---HHHHHHH
Q 012426 285 CATAYL---QYVVRYI 297 (464)
Q Consensus 285 ~~e~li---~~i~~~~ 297 (464)
..+.++ ..+++.+
T Consensus 173 e~~~~~~~y~~if~~L 188 (568)
T TIGR00409 173 TYQKMYQAYSNIFSRL 188 (568)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 555444 4555544
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi. |
| >cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0001 Score=73.84 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=71.5
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC---CCC-----CCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~---eg~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
..-.+++..|.+.+++.+.+.||.||.||.|...+. .|. .++|.++.
T Consensus 27 p~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~------------------------- 81 (298)
T cd00771 27 PKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFEE------------------------- 81 (298)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEecc-------------------------
Confidence 345788899999999999999999999999987531 121 23443311
Q ss_pred ccccccCcccccccchhHHH-HHHhh------ccC-ceEEEccccccCCCCCcc---ccccchhccceeccCCHHHHHHH
Q 012426 217 WSQDFFEKPAFLTVSGQLNA-ETYAT------ALS-NVYTFGPTFRAENSNTSR---HLAEFWMIEPELAFADLKDDMAC 285 (464)
Q Consensus 217 ~~~~~f~~~~yL~~Spql~l-qll~~------g~~-rVfeI~~~FR~E~~~t~r---Hl~EFtmlE~e~a~~~~~dlm~~ 285 (464)
-+..++|+...+-.. .+.+. .+. |+|++|+|||+|.+...+ =.-||+|.|++.... -++..+.
T Consensus 82 -----~~~~l~LRP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~-~e~~~~e 155 (298)
T cd00771 82 -----EDEEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCT-PDQIKEE 155 (298)
T ss_pred -----CCceEEEcccCCHHHHHHHHhhccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeC-CcchHHH
Confidence 013444543333222 33322 232 899999999999773111 124999999998533 2333334
Q ss_pred HHHHHH
Q 012426 286 ATAYLQ 291 (464)
Q Consensus 286 ~e~li~ 291 (464)
+++++.
T Consensus 156 ~~e~l~ 161 (298)
T cd00771 156 IKGVLD 161 (298)
T ss_pred HHHHHH
Confidence 444443
|
ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I | Back alignment and domain information |
|---|
Probab=97.74 E-value=9.2e-05 Score=78.78 Aligned_cols=123 Identities=15% Similarity=0.140 Sum_probs=84.7
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-C---CC-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD-C---EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~---eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
..-.+++..|.+.+++-+.+.||.||.||.|.+.. . ++ ..++|.+++...
T Consensus 35 P~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~--------------------- 93 (472)
T TIGR00408 35 PYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGL--------------------- 93 (472)
T ss_pred cCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCC---------------------
Confidence 34578899999999999999999999999998743 1 12 345676654210
Q ss_pred cccccccCcccccccchhHHH-HHHhh------cc-CceEEEccccccCCCCCc--cccccchhccceeccCCHHHHHHH
Q 012426 216 DWSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFADLKDDMAC 285 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~Spql~l-qll~~------g~-~rVfeI~~~FR~E~~~t~--rHl~EFtmlE~e~a~~~~~dlm~~ 285 (464)
+=.+.+++|+...+-.. .+... .+ -|+|++++|||+|...+. -=.-||+|.|.+..|.+.++..+.
T Consensus 94 ----~~~~e~l~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e 169 (472)
T TIGR00408 94 ----SKLDEPLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQ 169 (472)
T ss_pred ----CccCCcEEEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHH
Confidence 00134556665555444 33222 12 289999999999987421 124599999999989988888877
Q ss_pred HHHHHHH
Q 012426 286 ATAYLQY 292 (464)
Q Consensus 286 ~e~li~~ 292 (464)
++.++..
T Consensus 170 ~~~~l~~ 176 (472)
T TIGR00408 170 VLRALDI 176 (472)
T ss_pred HHHHHHH
Confidence 7777643
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. |
| >PRK09194 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00017 Score=78.65 Aligned_cols=126 Identities=14% Similarity=0.088 Sum_probs=80.2
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CCC-------CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CEG-------AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~eg-------~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
....-++++.+|.+.+|+.|.+.||.||.||.|.+.. ... +.++|.+++.
T Consensus 42 ~lP~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~d~---------------------- 99 (565)
T PRK09194 42 YLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRLKDR---------------------- 99 (565)
T ss_pred ECccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhceEEecC----------------------
Confidence 3455688999999999999999999999999999743 111 2346655321
Q ss_pred ccccccccCcccccccchhHHH-HHHhh---c---c-CceEEEccccccCCCCCcc--ccccchhccceeccCCHHHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSGQLNA-ETYAT---A---L-SNVYTFGPTFRAENSNTSR--HLAEFWMIEPELAFADLKDDMA 284 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spql~l-qll~~---g---~-~rVfeI~~~FR~E~~~t~r--Hl~EFtmlE~e~a~~~~~dlm~ 284 (464)
-+++++|+.-.+-.. .++.. . + -|.|+|++|||.|.....= =.-||+|.|.|....+-.+...
T Consensus 100 -------~~~~l~LrPt~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~~ 172 (565)
T PRK09194 100 -------HGRDFVLGPTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDE 172 (565)
T ss_pred -------CCCEEEECCCChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHHH
Confidence 134555654333222 33221 1 2 3899999999999431110 2349999999998776555444
Q ss_pred HHHHHH---HHHHHHH
Q 012426 285 CATAYL---QYVVRYI 297 (464)
Q Consensus 285 ~~e~li---~~i~~~~ 297 (464)
..++++ ..+++.+
T Consensus 173 ~~~~~~~~~~~i~~~l 188 (565)
T PRK09194 173 TYDAMYQAYSRIFDRL 188 (565)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 444444 4444443
|
|
| >cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.73 E-value=5.4e-05 Score=74.07 Aligned_cols=101 Identities=24% Similarity=0.196 Sum_probs=66.6
Q ss_pred hhhhhHHHHHHHHHHHHhhhCC--cEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc
Q 012426 145 GAVARVRNALAYATHKFFQENG--FIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~g--F~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 222 (464)
..-.+++..|.+.+|+.|...| |.||.||+|.+. .+|.+. ..+ . +--
T Consensus 29 P~g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~------~mf~~~-~g~---------------~---------d~~ 77 (254)
T cd00774 29 PLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE------LMFKTS-IGP---------------V---------ESG 77 (254)
T ss_pred chHHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCH------HHheee-ecc---------------c---------CCC
Confidence 3457899999999999999885 999999999887 677652 110 0 001
Q ss_pred Cccccccc--ch---hHHHHHHhhc---c-CceEEEccccccCCCCC--ccccccchhccceecc
Q 012426 223 EKPAFLTV--SG---QLNAETYATA---L-SNVYTFGPTFRAENSNT--SRHLAEFWMIEPELAF 276 (464)
Q Consensus 223 ~~~~yL~~--Sp---ql~lqll~~g---~-~rVfeI~~~FR~E~~~t--~rHl~EFtmlE~e~a~ 276 (464)
+..+||+. .| -.+.+.+... + =|+||||+|||+|.+.. --=.-||||.|+|.-.
T Consensus 78 ~~~~~Lrp~~~~~~~~~~~~~~~~~~~~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~ 142 (254)
T cd00774 78 GNLGYLRPETAQGIFVNFKNLLEFNRRKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFV 142 (254)
T ss_pred CcccccCCcccchHHHHHHHHHHHhCCCCCchhhhhchhhccccCcccceeeeccchhhheeeeE
Confidence 23344543 21 1223433322 2 38999999999998632 0234599999999843
|
GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly |
| >TIGR00414 serS seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00012 Score=76.60 Aligned_cols=117 Identities=16% Similarity=0.267 Sum_probs=80.6
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CCCCC-------CCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CEGAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~eg~~-------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
.....++..+|++.+++.+.+.||.||.||.|.... .++.+ ++|.++
T Consensus 169 ~p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~------------------------- 223 (418)
T TIGR00414 169 KNDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLE------------------------- 223 (418)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEec-------------------------
Confidence 345688999999999999999999999999999854 23322 222221
Q ss_pred cccccccCcccccccchhHHHH-HHhh------cc-CceEEEccccccCCCC------CccccccchhccceeccCCHHH
Q 012426 216 DWSQDFFEKPAFLTVSGQLNAE-TYAT------AL-SNVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLKD 281 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~Spql~lq-ll~~------g~-~rVfeI~~~FR~E~~~------t~rHl~EFtmlE~e~a~~~~~d 281 (464)
+...||....+..+- +... .+ -|+|++++|||+|.+. +--=.-||+|.|. ..|.+-++
T Consensus 224 -------~~~~~L~pTsE~~~~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~-~~f~~~e~ 295 (418)
T TIGR00414 224 -------DTDLYLIPTAEVPLTNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVEL-VKFCKPEE 295 (418)
T ss_pred -------CCCEEEEeCCcHHHHHHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeE-EEEcCHHH
Confidence 234567776666653 3222 12 3799999999999741 1112349999999 45777777
Q ss_pred HHHHHHHHHHHH
Q 012426 282 DMACATAYLQYV 293 (464)
Q Consensus 282 lm~~~e~li~~i 293 (464)
..+..++++...
T Consensus 296 s~~~~~~~~~~~ 307 (418)
T TIGR00414 296 SAEELEEMTSDA 307 (418)
T ss_pred HHHHHHHHHHHH
Confidence 777777776544
|
This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model. |
| >PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00021 Score=70.95 Aligned_cols=112 Identities=17% Similarity=0.293 Sum_probs=73.0
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCC---CCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE---GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~e---g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (464)
+..-.+.+..+.+.+++.|...||-||.||.+.....- ...++|+..+..
T Consensus 15 lp~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~~~D~~--------------------------- 67 (281)
T PRK12293 15 FGKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSIADEKELIRFSDEK--------------------------- 67 (281)
T ss_pred CcHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcccchhceEEEECCC---------------------------
Confidence 34457788999999999999999999999999764321 223455443210
Q ss_pred ccCcccccccchhHHH---HHHhhc------cCceEEEccccccCCCCCccccccchhccceeccCC-HHHHHHHHHHHH
Q 012426 221 FFEKPAFLTVSGQLNA---ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMACATAYL 290 (464)
Q Consensus 221 ~f~~~~yL~~Spql~l---qll~~g------~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~-~~dlm~~~e~li 290 (464)
++. |..=|++=. |+++.. --|.|.+|+|||.|. .||+|+.+|.-+.+ ..+++.++-+.+
T Consensus 68 --g~~--l~LRpD~T~~iaR~~a~~~~~~~~p~r~~Y~g~vfR~~~-------rEf~Q~GvEliG~~~~~Evi~la~~~l 136 (281)
T PRK12293 68 --NHQ--ISLRADSTLDVVRIVTKRLGRSTEHKKWFYIQPVFRYPS-------NEIYQIGAELIGEEDLSEILNIAAEIF 136 (281)
T ss_pred --CCE--EEECCcCCHHHHHHHHHhcccCCCceeEEEeccEEecCC-------CcccccCeEeeCCCCHHHHHHHHHHHH
Confidence 222 222233222 333321 238999999999884 49999999998874 556665555555
Q ss_pred HHH
Q 012426 291 QYV 293 (464)
Q Consensus 291 ~~i 293 (464)
+.+
T Consensus 137 ~~l 139 (281)
T PRK12293 137 EEL 139 (281)
T ss_pred HHc
Confidence 443
|
|
| >PRK05431 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0001 Score=77.44 Aligned_cols=116 Identities=18% Similarity=0.308 Sum_probs=81.1
Q ss_pred hhhhhHHHHHHHHHHHHhh-hCCcEEEeCceEeecC-CCCCC-------CCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 012426 145 GAVARVRNALAYATHKFFQ-ENGFIWISSPIITASD-CEGAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~-~~gF~EV~TP~L~~~~-~eg~~-------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
....++..+|++.+++.+. +.||.||.||.|.... .++.+ ++|.++
T Consensus 167 p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i~------------------------- 221 (425)
T PRK05431 167 GDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIE------------------------- 221 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEec-------------------------
Confidence 4567899999999999998 9999999999999843 22221 122221
Q ss_pred cccccccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCCCCc------cccccchhccceeccCCHHH
Q 012426 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTS------RHLAEFWMIEPELAFADLKD 281 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~~t~------rHl~EFtmlE~e~a~~~~~d 281 (464)
+.+.||....|..+ -++... + =|+|++++|||+|..... -=..||+|.|.+ +|..-++
T Consensus 222 -------~~~~~L~pTsE~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~-~f~~~e~ 293 (425)
T PRK05431 222 -------DDDLYLIPTAEVPLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELV-KFTKPED 293 (425)
T ss_pred -------CCCEEEEeCCcHHHHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEE-EEECHHH
Confidence 34567877777666 333322 2 489999999999975210 123499999999 5777777
Q ss_pred HHHHHHHHHHHH
Q 012426 282 DMACATAYLQYV 293 (464)
Q Consensus 282 lm~~~e~li~~i 293 (464)
..+..++++...
T Consensus 294 s~~~~~~~l~~~ 305 (425)
T PRK05431 294 SYAELEELTANA 305 (425)
T ss_pred HHHHHHHHHHHH
Confidence 777777777544
|
|
| >TIGR00418 thrS threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00016 Score=78.78 Aligned_cols=116 Identities=17% Similarity=0.150 Sum_probs=74.9
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-C--CCC-----CCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--GAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-e--g~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
....-.+++..|.+.+|+.+.+.||.||.||+|....- . |.. ++|.+++.
T Consensus 195 ~~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~~d~---------------------- 252 (563)
T TIGR00418 195 WLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPFTEL---------------------- 252 (563)
T ss_pred EeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhcceeccC----------------------
Confidence 44567889999999999999999999999999987431 1 211 23332210
Q ss_pred ccccccccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCCCCc-----cccccchhccceeccCCHHH
Q 012426 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTS-----RHLAEFWMIEPELAFADLKD 281 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~~t~-----rHl~EFtmlE~e~a~~~~~d 281 (464)
-++.++|+.-..-.. ++.+.. + -|+|++|+|||+|.+ +. | .-||+|.|+|.-.. .++
T Consensus 253 -------~~~~~~LrP~~~~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~-g~~~Gl~R-~reF~q~~~~~~~~-~~~ 322 (563)
T TIGR00418 253 -------DNREFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQS-GELHGLMR-VRGFTQDDAHIFCT-EDQ 322 (563)
T ss_pred -------CCceEEEecCCCHHHHHHHhCcCCChHHCCceeeEeccccCCCCC-cCCcCccc-ccceEEeeeEEEcC-HHH
Confidence 034556655444443 443321 2 389999999999965 32 3 24999999997544 444
Q ss_pred HHHHHHHHH
Q 012426 282 DMACATAYL 290 (464)
Q Consensus 282 lm~~~e~li 290 (464)
.....++++
T Consensus 323 ~~~e~~~~i 331 (563)
T TIGR00418 323 IKEEFKNQF 331 (563)
T ss_pred HHHHHHHHH
Confidence 444434444
|
This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether.. |
| >PRK12305 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0002 Score=78.26 Aligned_cols=123 Identities=20% Similarity=0.245 Sum_probs=78.9
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CC--CC-----CCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CE--GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~e--g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
....-.+++..|.+.+++.+.+.||.||.||+|.... .. |. .++|.+++.
T Consensus 201 ~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~d~---------------------- 258 (575)
T PRK12305 201 WHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPMEI---------------------- 258 (575)
T ss_pred EeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhccccccc----------------------
Confidence 4566788999999999999999999999999999853 11 22 234443211
Q ss_pred ccccccccCcccccccch-hHHHHHHhh------ccC-ceEEEccccccCCCCCccc----cccchhccceeccCCHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSG-QLNAETYAT------ALS-NVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDD 282 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Sp-ql~lqll~~------g~~-rVfeI~~~FR~E~~~t~rH----l~EFtmlE~e~a~~~~~dl 282 (464)
-++.+.|+.-. ..+.++.+. .+. |.|++|+|||+|.+. .+| .-||+|.|++. |.+.+..
T Consensus 259 -------~~~~~~LRP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~-~~~Gl~R~reF~q~~~~i-f~~~~~~ 329 (575)
T PRK12305 259 -------DEEEYYLKPMNCPGHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSG-VLHGLTRVRGFTQDDAHI-FCTPDQI 329 (575)
T ss_pred -------CCceEEEecCCCHHHHHHHhcccCChhhCCHhhEEecccccCCCCC-CCcCcccccCeEEcceEE-EeCHHHH
Confidence 02334443221 222233322 232 899999999999873 222 24999999995 6666666
Q ss_pred HHHHHHHHHHHHHH
Q 012426 283 MACATAYLQYVVRY 296 (464)
Q Consensus 283 m~~~e~li~~i~~~ 296 (464)
.+.+.+++..+..-
T Consensus 330 ~~e~~e~i~l~~~~ 343 (575)
T PRK12305 330 EDEILKVLDFVLEL 343 (575)
T ss_pred HHHHHHHHHHHHHH
Confidence 65556666544433
|
|
| >cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00014 Score=72.85 Aligned_cols=117 Identities=18% Similarity=0.290 Sum_probs=79.5
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CCCCC-------CCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CEGAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~eg~~-------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
.....+++.+|.+.+++.+.+.||.||.||.|.+.. .++.+ ++|.++
T Consensus 48 ~p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v~------------------------- 102 (297)
T cd00770 48 KGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVE------------------------- 102 (297)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEec-------------------------
Confidence 345679999999999999999999999999999854 23222 233221
Q ss_pred cccccccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCC------CCccccccchhccceeccCCHHH
Q 012426 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENS------NTSRHLAEFWMIEPELAFADLKD 281 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~------~t~rHl~EFtmlE~e~a~~~~~d 281 (464)
+.+++|....+..+ .++..- + =|+|++|+|||+|.. .+---.-||+|.|.+. |..-++
T Consensus 103 -------~~~~~L~pt~e~~~~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~-f~~~e~ 174 (297)
T cd00770 103 -------GEDLYLIATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFV-FTKPEE 174 (297)
T ss_pred -------CCCEEEeecCCHHHHHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEE-EECchH
Confidence 24556766666665 343321 2 389999999999976 1222456999999974 654466
Q ss_pred HHHHHHHHHHHH
Q 012426 282 DMACATAYLQYV 293 (464)
Q Consensus 282 lm~~~e~li~~i 293 (464)
..+..++++...
T Consensus 175 ~~~~~~~~l~~~ 186 (297)
T cd00770 175 SWEELEELISNA 186 (297)
T ss_pred HHHHHHHHHHHH
Confidence 666666655443
|
SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer. |
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00022 Score=78.80 Aligned_cols=120 Identities=15% Similarity=0.190 Sum_probs=78.5
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CC--CCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CE--GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~e--g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (464)
...-.+++..|.+.+++.+.+.||.||.||+|.... .. |..+-|.- .-
T Consensus 270 ~p~g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~-----------------------------em 320 (639)
T PRK12444 270 LPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKD-----------------------------NM 320 (639)
T ss_pred eeCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhh-----------------------------hc
Confidence 344567888899999999999999999999999853 11 22111110 01
Q ss_pred cc----CcccccccchhHHH-HHHhhcc-------CceEEEccccccCCCCC--c-cccccchhccceeccCCHHHHHHH
Q 012426 221 FF----EKPAFLTVSGQLNA-ETYATAL-------SNVYTFGPTFRAENSNT--S-RHLAEFWMIEPELAFADLKDDMAC 285 (464)
Q Consensus 221 ~f----~~~~yL~~Spql~l-qll~~g~-------~rVfeI~~~FR~E~~~t--~-rHl~EFtmlE~e~a~~~~~dlm~~ 285 (464)
|| ++.++|+.-.+-.. ++....+ -|+|++|+|||.|.+.+ . -=.-||+|.|++ .|++-+++...
T Consensus 321 y~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~-~f~~~~~~~~e 399 (639)
T PRK12444 321 YFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPDQIEDE 399 (639)
T ss_pred CeecCCCcEEEEccCCCHHHHHHHhCcccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEE-EECCHHHHHHH
Confidence 11 23455665555554 4443221 38999999999998632 1 012489999999 68887776666
Q ss_pred HHHHHHHH
Q 012426 286 ATAYLQYV 293 (464)
Q Consensus 286 ~e~li~~i 293 (464)
.++++..+
T Consensus 400 ~~~~~~~~ 407 (639)
T PRK12444 400 IKSVMAQI 407 (639)
T ss_pred HHHHHHHH
Confidence 66666443
|
|
| >PRK08661 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00015 Score=77.34 Aligned_cols=122 Identities=17% Similarity=0.075 Sum_probs=85.3
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC----CC-----CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC----EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~----eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
...-.+++..|.+.+++.|.+.||.||.||.|.+.+- .+ ..++|.+++.+.
T Consensus 40 ~P~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~-------------------- 99 (477)
T PRK08661 40 KPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGG-------------------- 99 (477)
T ss_pred CccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCC--------------------
Confidence 4556899999999999999999999999999987432 12 335666643210
Q ss_pred ccccccccCcccccccchhHHH-HH----Hhh--cc-CceEEEccccccCCCCCc--cccccchhccceeccCCHHHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSGQLNA-ET----YAT--AL-SNVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFADLKDDMA 284 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spql~l-ql----l~~--g~-~rVfeI~~~FR~E~~~t~--rHl~EFtmlE~e~a~~~~~dlm~ 284 (464)
.=.+.+++|+...+-.+ .+ +.+ .+ =|+|++++|||+|.. ++ -=.-||+|.|.+.++.+.++..+
T Consensus 100 -----~~~~e~l~LrPtsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~eea~~ 173 (477)
T PRK08661 100 -----EKLEEKLALRPTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEEAEE 173 (477)
T ss_pred -----CccCceEEEecCCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHHHHH
Confidence 00134566765553333 22 221 22 379999999999987 43 23459999999999999888887
Q ss_pred HHHHHHH
Q 012426 285 CATAYLQ 291 (464)
Q Consensus 285 ~~e~li~ 291 (464)
.++.++.
T Consensus 174 e~~~~l~ 180 (477)
T PRK08661 174 ETLEMLE 180 (477)
T ss_pred HHHHHHH
Confidence 7777664
|
|
| >TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00025 Score=71.56 Aligned_cols=103 Identities=18% Similarity=0.136 Sum_probs=68.8
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC------CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccc
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (464)
..-.+.+..+...+++.|.++||.||+||+|..... +...++|.+.+.+
T Consensus 5 p~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~~d~~------------------------- 59 (314)
T TIGR00443 5 PEEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGGILNEDLFKLFDSL------------------------- 59 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCCcchhceEEEECCC-------------------------
Confidence 345678899999999999999999999999987432 1122345442211
Q ss_pred ccccCccccccc--chhHHHHHHhh---c---cCceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 219 QDFFEKPAFLTV--SGQLNAETYAT---A---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 219 ~~~f~~~~yL~~--Spql~lqll~~---g---~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
|+.+-|+. .++ +.+.++. + --|+|++|+|||.|... .-+.-||+|+.+|.-..+
T Consensus 60 ----g~~l~LRpD~T~~-iaR~~~~~~~~~~~p~r~~y~g~VfR~~~~~-~gr~re~~Q~g~Eiig~~ 121 (314)
T TIGR00443 60 ----GRVLGLRPDMTTP-IARAVSTRLRDRPLPLRLCYAGNVFRTNESG-AGRSREFTQAGVELIGAG 121 (314)
T ss_pred ----CCEEeecCcCcHH-HHHHHHHhcccCCCCeEEEEeceEeecCCCc-CCCcccccccceEEeCCC
Confidence 22222221 122 2343332 2 35899999999999974 567889999999986653
|
Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit. |
| >CHL00201 syh histidine-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00034 Score=73.70 Aligned_cols=118 Identities=15% Similarity=0.211 Sum_probs=74.3
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC--C--C-C-----CCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC--E--G-A-----GEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~--e--g-~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
...-...|..+.+.+++.|...||.||.||++..... . | . .++|.+.+.+
T Consensus 14 lp~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~-------------------- 73 (430)
T CHL00201 14 LPDEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRS-------------------- 73 (430)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCC--------------------
Confidence 4455778999999999999999999999999987431 1 1 1 3455543211
Q ss_pred CccccccccCcccccccchhHHH-HHHhh------cc-CceEEEccccccCCCCCccccccchhccceeccCC-H---HH
Q 012426 214 LIDWSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L---KD 281 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql~l-qll~~------g~-~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~-~---~d 281 (464)
++.+-|+.=.-... ++++. .. -|.|++|+|||.|.....|- -||+|+++|.-+.+ . -+
T Consensus 74 ---------g~~l~LRpd~T~~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e~~q~GR~-Ref~Q~g~EiiG~~~~~aD~E 143 (430)
T CHL00201 74 ---------NRDITLRPEGTAGIVRAFIENKMDYHSNLQRLWYSGPMFRYERPQSGRQ-RQFHQLGIEFIGSIDARADTE 143 (430)
T ss_pred ---------CCEEEeCCCCcHHHHHHHHHccccccCCCeEEEEEcceecCCCCcCCcc-ceeEEeceEEECCCChhhHHH
Confidence 22333332111122 33222 12 39999999999998765554 49999999987653 1 24
Q ss_pred HHHHHHHHHH
Q 012426 282 DMACATAYLQ 291 (464)
Q Consensus 282 lm~~~e~li~ 291 (464)
+|.++-+.++
T Consensus 144 vi~l~~~~l~ 153 (430)
T CHL00201 144 VIHLAMQIFN 153 (430)
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
|
| >PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00035 Score=72.71 Aligned_cols=119 Identities=18% Similarity=0.142 Sum_probs=75.5
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-------CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
...-.+.+..+...+++.|.++||.||.||++..... +...++|.+.+.+
T Consensus 13 lp~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~~----------------------- 69 (391)
T PRK12292 13 LPEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQL----------------------- 69 (391)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEEeecC-----------------------
Confidence 3445778999999999999999999999999975321 1123455443220
Q ss_pred ccccccCcccccccchhHHH---HHHhhc------cCceEEEccccccCCCCCccccccchhccceeccCC-H---HHHH
Q 012426 217 WSQDFFEKPAFLTVSGQLNA---ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L---KDDM 283 (464)
Q Consensus 217 ~~~~~f~~~~yL~~Spql~l---qll~~g------~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~-~---~dlm 283 (464)
-++. |+.=|++=. |+++.. --|.|++|+|||.|... .-+.-||+|+.+|.-+.+ . -+++
T Consensus 70 -----~g~~--l~LRpD~T~~iaR~~a~~~~~~~~p~r~~y~g~vfR~~~~~-~gr~ref~Q~g~EiiG~~~~~aDaEvi 141 (391)
T PRK12292 70 -----SGRT--LGLRPDMTAQIARIAATRLANRPGPLRLCYAGNVFRAQERG-LGRSREFLQSGVELIGDAGLEADAEVI 141 (391)
T ss_pred -----CCCE--EEECCCCcHHHHHHHHHhccCCCCCeEEEeeceeeecCCCc-CCCccchhccceEEeCCCCchHHHHHH
Confidence 0122 222232222 333322 23899999999999874 456779999999987754 2 3455
Q ss_pred HHHHHHHHHH
Q 012426 284 ACATAYLQYV 293 (464)
Q Consensus 284 ~~~e~li~~i 293 (464)
.++-+.++.+
T Consensus 142 ~l~~~~l~~l 151 (391)
T PRK12292 142 LLLLEALKAL 151 (391)
T ss_pred HHHHHHHHHc
Confidence 5555554433
|
|
| >PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00045 Score=69.41 Aligned_cols=116 Identities=20% Similarity=0.299 Sum_probs=73.0
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC------CCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~------~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (464)
...-.+.+..+.+.+++.|..+||.+|+||++.... ++...+.|.+.+.+
T Consensus 6 ~~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~~D~~------------------------ 61 (311)
T PF13393_consen 6 LPEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDNMYRFLDRS------------------------ 61 (311)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEEECTT------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccchhhhEEEEecC------------------------
Confidence 344578889999999999999999999999998743 12233555543211
Q ss_pred cccccCcccccccchhHHH---HHHhh-----ccCceEEEccccccCCCCCccccccchhccceeccCC-HH---HHHHH
Q 012426 218 SQDFFEKPAFLTVSGQLNA---ETYAT-----ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LK---DDMAC 285 (464)
Q Consensus 218 ~~~~f~~~~yL~~Spql~l---qll~~-----g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~-~~---dlm~~ 285 (464)
|.. |..-|.+=. |+++. -..|+|.+|++||.+... ..+.-||+|+.+|.-..+ .. +++.+
T Consensus 62 -----G~~--l~LR~D~T~~iaR~~a~~~~~~~~~r~~y~g~vfR~~~~~-~g~~re~~Q~g~Eiig~~~~~~daEvi~l 133 (311)
T PF13393_consen 62 -----GRV--LALRPDLTVPIARYVARNLNLPRPKRYYYIGPVFRYERPG-KGRPREFYQCGFEIIGSSSLEADAEVIKL 133 (311)
T ss_dssp -----SSE--EEE-SSSHHHHHHHHHHCCGSSSSEEEEEEEEEEEEETTT-TTBESEEEEEEEEEESSSSHHHHHHHHHH
T ss_pred -----CcE--eccCCCCcHHHHHHHHHhcCcCCCceEEEEcceeeccccC-CCCCceeEEEEEEEECCCCHHHHHHHHHH
Confidence 222 222233322 33333 246899999999999774 456679999999987764 43 55555
Q ss_pred HHHHHH
Q 012426 286 ATAYLQ 291 (464)
Q Consensus 286 ~e~li~ 291 (464)
+-+++.
T Consensus 134 ~~e~l~ 139 (311)
T PF13393_consen 134 ADEILD 139 (311)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
|
... |
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00042 Score=76.66 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=73.7
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC---CC-----CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~---eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
....-.+++..|.+.+++.|...||.||.||+|....- .| ..++|.+++.
T Consensus 265 ~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~d~---------------------- 322 (638)
T PRK00413 265 WHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPTTES---------------------- 322 (638)
T ss_pred EcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhccceeecC----------------------
Confidence 45677889999999999999999999999999987431 12 2234544221
Q ss_pred ccccccccCcccccccchh-HHHHHHhh------cc-CceEEEccccccCCCCCccc----cccchhccceeccCCHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSGQ-LNAETYAT------AL-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDD 282 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spq-l~lqll~~------g~-~rVfeI~~~FR~E~~~t~rH----l~EFtmlE~e~a~~~~~dl 282 (464)
-++.+.|+.-.. .+.++.+. .+ -|.|++|+|||+|.+. .+| .-||+|.|++. |..-+..
T Consensus 323 -------~~~~~~LRP~~~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~-~~~Gl~R~reF~q~~~~~-~g~~~~~ 393 (638)
T PRK00413 323 -------DGEEYALKPMNCPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSG-ALHGLMRVRGFTQDDAHI-FCTPEQI 393 (638)
T ss_pred -------CCcEEEEecCCcHHHHHHHhCcCCChhhCCceeeeccCeecCCCCC-CCcCcceeeeeEEeeEEE-EcCHHHH
Confidence 023334432221 11233321 23 2999999999999874 211 24999999997 5544433
Q ss_pred HHHHHHHH
Q 012426 283 MACATAYL 290 (464)
Q Consensus 283 m~~~e~li 290 (464)
.+.+.+++
T Consensus 394 ~~e~~eii 401 (638)
T PRK00413 394 EEEVKKVI 401 (638)
T ss_pred HHHHHHHH
Confidence 33334444
|
|
| >PRK12325 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00044 Score=73.01 Aligned_cols=119 Identities=17% Similarity=0.164 Sum_probs=79.9
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CC--C-----CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CE--G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~e--g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
....-.+++.+|.+.+|+.+.+.||.||.||.|.+.. .. | ..++|.+++.
T Consensus 42 ~lP~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~d~---------------------- 99 (439)
T PRK12325 42 WLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRIKDR---------------------- 99 (439)
T ss_pred ECCcHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhheEEecC----------------------
Confidence 3455689999999999999999999999999999752 11 1 2345554321
Q ss_pred ccccccccCcccccccch-hHHHHHH---hhc---c-CceEEEccccccCCCCCccc----cccchhccceeccCCHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSG-QLNAETY---ATA---L-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDD 282 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Sp-ql~lqll---~~g---~-~rVfeI~~~FR~E~~~t~rH----l~EFtmlE~e~a~~~~~dl 282 (464)
-+.+++|.... +.+-.++ +.. + =|+|+++++||+|... +| .-||+|-|+|....+.+++
T Consensus 100 -------~~~~~~L~Pt~e~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~~~--~~GL~R~reF~~~D~h~f~~~~~~a 170 (439)
T PRK12325 100 -------HDREMLYGPTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIRP--RFGVMRGREFLMKDAYSFDLDEEGA 170 (439)
T ss_pred -------CCCEEEEcCCCcHHHHHHHHHHhhhchhhchHheEecCEecCCCCC--CCCccccceEeEeccEEEeCCHHHH
Confidence 02344555322 3333322 112 3 4899999999999652 33 4699999999987887777
Q ss_pred HHHHHHHHHH
Q 012426 283 MACATAYLQY 292 (464)
Q Consensus 283 m~~~e~li~~ 292 (464)
.+..++++..
T Consensus 171 ~~~~~~~~~~ 180 (439)
T PRK12325 171 RHSYNRMFVA 180 (439)
T ss_pred HHHHHHHHHH
Confidence 6655555543
|
|
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00038 Score=77.45 Aligned_cols=122 Identities=18% Similarity=0.140 Sum_probs=82.7
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CCC--C-----CCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CEG--A-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~eg--~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
....-.+++.+|+..+|+.+.+.||.||.||.|.+.. ..+ . .++|.+..
T Consensus 316 ~lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~~~----------------------- 372 (686)
T PLN02908 316 FLPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVFEI----------------------- 372 (686)
T ss_pred EechHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEEec-----------------------
Confidence 4566789999999999999999999999999998853 221 1 12333210
Q ss_pred ccccccccCcccccccchhHHH-HHHhh------cc-CceEEEccccccCCCC---CccccccchhccceeccCCHHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSN---TSRHLAEFWMIEPELAFADLKDDM 283 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spql~l-qll~~------g~-~rVfeI~~~FR~E~~~---t~rHl~EFtmlE~e~a~~~~~dlm 283 (464)
-+..++|+.-.+-.. .+... .+ =|+|++|+|||+|.+. +-.=.-||+|.|++. |+.-+++.
T Consensus 373 -------~~~~~~Lrp~~~~~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~~~q~~ 444 (686)
T PLN02908 373 -------EKQEFGLKPMNCPGHCLMFAHRVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCREDQIK 444 (686)
T ss_pred -------CCeeEEEcCCCcHHHHHHHhccccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEE-EcCHHHHH
Confidence 023445544443333 33222 12 2899999999999873 212234899999998 87778888
Q ss_pred HHHHHHHHHHHH
Q 012426 284 ACATAYLQYVVR 295 (464)
Q Consensus 284 ~~~e~li~~i~~ 295 (464)
+.+++++..+..
T Consensus 445 ~e~~~~l~~~~~ 456 (686)
T PLN02908 445 DEVKGVLDFLDY 456 (686)
T ss_pred HHHHHHHHHHHH
Confidence 888877765543
|
|
| >PLN02530 histidine-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00057 Score=73.11 Aligned_cols=116 Identities=14% Similarity=0.140 Sum_probs=74.5
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-------CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
.+..-.+.|..|...+++.|...||.||.||+|...+- +...++|...+.
T Consensus 79 ~lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f~D~----------------------- 135 (487)
T PLN02530 79 FPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEEITDQLYNFEDK----------------------- 135 (487)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcccccceEEEECC-----------------------
Confidence 34556788999999999999999999999999987321 111234433211
Q ss_pred cccccccCcccccccchhHHH---HHHhhc-----c-CceEEEccccccCCCCCccccccchhccceeccCC----HHHH
Q 012426 216 DWSQDFFEKPAFLTVSGQLNA---ETYATA-----L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDD 282 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~Spql~l---qll~~g-----~-~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~----~~dl 282 (464)
-++.+-|+ |++=. |+++.- + -|.|++|+|||.|..... +.-||+|+.+|.-+.+ --++
T Consensus 136 ------~g~~l~LR--pD~T~~iaR~~~~~~~~~~~P~r~~y~g~vfR~e~~q~g-r~REf~Q~giEiiG~~~~~aDaEv 206 (487)
T PLN02530 136 ------GGRRVALR--PELTPSLARLVLQKGKSLSLPLKWFAIGQCWRYERMTRG-RRREHYQWNMDIIGVPGVEAEAEL 206 (487)
T ss_pred ------CCCEEecC--CCCcHHHHHHHHhcccccCCCeEEEEEcCEEcCcCCCCC-CccceEEcCeeEeCCCCcchhHHH
Confidence 12332232 33322 444331 2 389999999999987433 4679999999987653 2344
Q ss_pred HHHHHHHH
Q 012426 283 MACATAYL 290 (464)
Q Consensus 283 m~~~e~li 290 (464)
+.++.+.+
T Consensus 207 i~l~~~~l 214 (487)
T PLN02530 207 LAAIVTFF 214 (487)
T ss_pred HHHHHHHH
Confidence 44444433
|
|
| >PRK12420 histidyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00064 Score=71.46 Aligned_cols=119 Identities=18% Similarity=0.262 Sum_probs=77.6
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC--CC--C-C----CCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD--CE--G-A----GEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~--~e--g-~----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
.+..-..++..+...+++.|..+||.||.||+|...+ .. + + .++|.+++.+
T Consensus 13 ~~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~-------------------- 72 (423)
T PRK12420 13 YLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQG-------------------- 72 (423)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCC--------------------
Confidence 3455678899999999999999999999999998743 11 1 1 2345443211
Q ss_pred CccccccccCcccccccchhHHH---HHHhh--c--cC-ceEEEccccccCCCCCccccccchhccceeccCC----HHH
Q 012426 214 LIDWSQDFFEKPAFLTVSGQLNA---ETYAT--A--LS-NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKD 281 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql~l---qll~~--g--~~-rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~----~~d 281 (464)
|+. |..-|++=. |+++. . .. |.|++|+|||.|... .-+.-||+|+.+|.-..+ --+
T Consensus 73 ---------g~~--l~LRpD~T~~iaR~va~~~~~~~p~r~~y~g~vfR~~~~~-~gr~rE~~Q~g~EiiG~~~~~adaE 140 (423)
T PRK12420 73 ---------KRD--LALRYDLTIPFAKVVAMNPNIRLPFKRYEIGKVFRDGPIK-QGRFREFIQCDVDIVGVESVMAEAE 140 (423)
T ss_pred ---------Cce--ecccccccHHHHHHHHhCcCCCCCeeEEEEcceECCCCCC-CCccceeEECCeeeECCCCCcccHH
Confidence 222 222233322 33332 1 22 899999999999874 456789999999986653 255
Q ss_pred HHHHHHHHHHHH
Q 012426 282 DMACATAYLQYV 293 (464)
Q Consensus 282 lm~~~e~li~~i 293 (464)
++.++-+.++.+
T Consensus 141 vi~la~~~l~~l 152 (423)
T PRK12420 141 LMSMAFELFRRL 152 (423)
T ss_pred HHHHHHHHHHHC
Confidence 666665555443
|
|
| >PLN02972 Histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0007 Score=74.93 Aligned_cols=118 Identities=14% Similarity=0.140 Sum_probs=77.4
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC------CCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~------~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
....-..+|..|...+++.|..+||.||+||++.... ++...++|...+..
T Consensus 336 ~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~f~D~g----------------------- 392 (763)
T PLN02972 336 FAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGEDSKLIYDLADQG----------------------- 392 (763)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcchhheEEEECCC-----------------------
Confidence 5667788999999999999999999999999997532 12222355443211
Q ss_pred ccccccCcccccccchhHHH---HHHhhc---cCceEEEccccccCCCCCccccccchhccceeccC-C----HHHHHHH
Q 012426 217 WSQDFFEKPAFLTVSGQLNA---ETYATA---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-D----LKDDMAC 285 (464)
Q Consensus 217 ~~~~~f~~~~yL~~Spql~l---qll~~g---~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-~----~~dlm~~ 285 (464)
|+.+-|+ |++=. |+++.. --|.|+||+|||.|... .-+.-||+|+++|..+. + --+++.+
T Consensus 393 ------Gr~LaLR--PDlTvPiAR~vA~n~~~p~KrYyiG~VFR~e~pq-kGR~REF~Q~G~EIIG~~~~~~aDAEVI~L 463 (763)
T PLN02972 393 ------GELCSLR--YDLTVPFARYVAMNGITSFKRYQIAKVYRRDNPS-KGRYREFYQCDFDIAGVYEPMGPDFEIIKV 463 (763)
T ss_pred ------CCEEEeC--CCChHHHHHHHHhCCCCcceEEEeccEEecCCCC-CCCCccceEEeEEEEcCCCcchhhHHHHHH
Confidence 2222222 22222 444321 24788999999999874 44567999999999875 2 2455666
Q ss_pred HHHHHHH
Q 012426 286 ATAYLQY 292 (464)
Q Consensus 286 ~e~li~~ 292 (464)
+-+.++.
T Consensus 464 a~E~L~~ 470 (763)
T PLN02972 464 LTELLDE 470 (763)
T ss_pred HHHHHHh
Confidence 5555544
|
|
| >PRK14799 thrS threonyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00068 Score=73.19 Aligned_cols=122 Identities=12% Similarity=0.079 Sum_probs=81.5
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-C--CCCC-----CCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD-C--EGAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~--eg~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
....-.++|..|...+|+.+.+.||.||.||.|.... . .|.- ++|.++ .
T Consensus 163 ~lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~~-~---------------------- 219 (545)
T PRK14799 163 FHPKGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFN-M---------------------- 219 (545)
T ss_pred EcChHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhhccccccchhhcceee-c----------------------
Confidence 4566789999999999999999999999999987643 1 1211 223221 0
Q ss_pred ccccccccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCCCCc---cccccchhccceeccCCHHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTS---RHLAEFWMIEPELAFADLKDDM 283 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~~t~---rHl~EFtmlE~e~a~~~~~dlm 283 (464)
-+++++|+.-..-.. ++.... + =|.|++|+|||.|.+... .=.-||||.|+.. |++.+++.
T Consensus 220 -------~~e~~~LrPm~cp~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHi-f~~~~q~~ 291 (545)
T PRK14799 220 -------EGDEYGVKPMNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHI-FLREDQLR 291 (545)
T ss_pred -------cCceEEeccCCCHHHHHHHhccccChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEE-EeCHHHHH
Confidence 023444544443333 333321 2 289999999999988420 2345999999998 88877777
Q ss_pred HHHHHHHHHHHH
Q 012426 284 ACATAYLQYVVR 295 (464)
Q Consensus 284 ~~~e~li~~i~~ 295 (464)
+.+.+++..+..
T Consensus 292 ~E~~~~l~~i~~ 303 (545)
T PRK14799 292 EEIKMLISKTVE 303 (545)
T ss_pred HHHHHHHHHHHH
Confidence 777666655544
|
|
| >PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0011 Score=69.05 Aligned_cols=119 Identities=12% Similarity=0.145 Sum_probs=75.3
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC--CC-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC--EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~--eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
...-.+.+..+.+.+++.|..+||.||.||++..... .+ ...+|+..+...
T Consensus 17 lp~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~~~---------------------- 74 (392)
T PRK12421 17 LPEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQLS---------------------- 74 (392)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEEEcCCC----------------------
Confidence 4455788999999999999999999999999986431 11 123444432100
Q ss_pred ccccccCcccccccchhHHH---HHHhh-----ccCceEEEccccccCCCCCccccccchhccceeccCC-HH---HHHH
Q 012426 217 WSQDFFEKPAFLTVSGQLNA---ETYAT-----ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LK---DDMA 284 (464)
Q Consensus 217 ~~~~~f~~~~yL~~Spql~l---qll~~-----g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~-~~---dlm~ 284 (464)
|+. |+.=|++=. |+++. .--|.|.+|+|||.+.....| .-||+|+.+|.-+.+ .. +++.
T Consensus 75 ------g~~--l~LRpD~T~~iaR~~a~~~~~~~p~R~~Y~g~VfR~~~~~~gr-~rEf~Q~GvEiiG~~~~~aDaEvi~ 145 (392)
T PRK12421 75 ------GRL--MGVRADITPQVARIDAHLLNREGVARLCYAGSVLHTLPQGLFG-SRTPLQLGAELYGHAGIEADLEIIR 145 (392)
T ss_pred ------CcE--EEECCcCCHHHHHHHHhhcCCCCceEEEEeeeEEEcCCCcCCC-cCccceeceEEeCCCCchhHHHHHH
Confidence 111 222222221 22221 235899999999998764344 469999999987764 33 6666
Q ss_pred HHHHHHHHH
Q 012426 285 CATAYLQYV 293 (464)
Q Consensus 285 ~~e~li~~i 293 (464)
++-+.++.+
T Consensus 146 l~~e~l~~l 154 (392)
T PRK12421 146 LMLGLLRNA 154 (392)
T ss_pred HHHHHHHHc
Confidence 666666554
|
|
| >PLN02837 threonine-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0009 Score=73.57 Aligned_cols=122 Identities=16% Similarity=0.120 Sum_probs=79.2
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CCCC-------CCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CEGA-------GEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~eg~-------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
....-.+++.+|++.+++...++||.||.||.|.... +++. .++|.+....
T Consensus 242 ~~p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~--------------------- 300 (614)
T PLN02837 242 WHPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDIE--------------------- 300 (614)
T ss_pred EechHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhcccccCCC---------------------
Confidence 3466789999999999999999999999999999854 2221 1333321100
Q ss_pred ccccccccCcccccccchhHHH-HHHhh------cc-CceEEEccccccCCCCC---ccccccchhccceeccCCHHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNT---SRHLAEFWMIEPELAFADLKDDM 283 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spql~l-qll~~------g~-~rVfeI~~~FR~E~~~t---~rHl~EFtmlE~e~a~~~~~dlm 283 (464)
+..+.|+.+.+-.. .+... .+ -|++++++|||+|.+.. --=.-||+|.|.+. |+..++..
T Consensus 301 --------~~~y~l~p~~~p~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~-f~~~~q~~ 371 (614)
T PLN02837 301 --------DELYQLRPMNCPYHILVYKRKLHSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIK 371 (614)
T ss_pred --------CceEEECCCCcHHHHHHHhCccCChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEE-EeCHHHHH
Confidence 11122333332221 22211 12 37999999999998621 11234899999996 98888888
Q ss_pred HHHHHHHHHHH
Q 012426 284 ACATAYLQYVV 294 (464)
Q Consensus 284 ~~~e~li~~i~ 294 (464)
+..++++..+.
T Consensus 372 ~e~~~~l~~~~ 382 (614)
T PLN02837 372 DEIRGVLDLTE 382 (614)
T ss_pred HHHHHHHHHHH
Confidence 88887776543
|
|
| >PRK03991 threonyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0017 Score=71.10 Aligned_cols=124 Identities=16% Similarity=0.196 Sum_probs=82.7
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeec---CCCCC-----CCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITAS---DCEGA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~---~~eg~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
...-.+++..|.+.+++.+.+.||.+|.||.+... ...|. .++|.++..
T Consensus 223 ~P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~~----------------------- 279 (613)
T PRK03991 223 YPKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKSD----------------------- 279 (613)
T ss_pred EcHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEecCC-----------------------
Confidence 45678999999999999999999999999999443 22222 234443210
Q ss_pred cccccccCcccccccchhHHHH-HHh---h---cc-CceEEEcc-ccccCCCCC---ccccccchhccceeccCCHHHHH
Q 012426 216 DWSQDFFEKPAFLTVSGQLNAE-TYA---T---AL-SNVYTFGP-TFRAENSNT---SRHLAEFWMIEPELAFADLKDDM 283 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~Spql~lq-ll~---~---g~-~rVfeI~~-~FR~E~~~t---~rHl~EFtmlE~e~a~~~~~dlm 283 (464)
+.+++|+...+...= +.. . .+ -|+|++|+ |||+|.+.. -.=+-||+|.|.+.-..+.++.+
T Consensus 280 -------~e~l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~ 352 (613)
T PRK03991 280 -------KKDLMLRFAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAM 352 (613)
T ss_pred -------CceEEEecCCCHHHHHHHhCCcCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHH
Confidence 234455544443331 111 1 12 37999999 999997621 12345899999998666689999
Q ss_pred HHHHHHHHHHHHHH
Q 012426 284 ACATAYLQYVVRYI 297 (464)
Q Consensus 284 ~~~e~li~~i~~~~ 297 (464)
+..++++..+..-+
T Consensus 353 ~e~~~~l~~~~~i~ 366 (613)
T PRK03991 353 EEFEKQYEMILETG 366 (613)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887654433
|
|
| >COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0026 Score=66.45 Aligned_cols=119 Identities=23% Similarity=0.310 Sum_probs=77.3
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC------CC----CCCCceeeecCCCcccccCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EG----AGEQFCVTTLIPSSREAAESPVDAIPKTKD 212 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~------eg----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~ 212 (464)
....-...+..|...+|+.+.+.||.||.||++-...- |. ..+++..++.
T Consensus 13 ~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dk-------------------- 72 (429)
T COG0124 13 FLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDK-------------------- 72 (429)
T ss_pred cChHHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeC--------------------
Confidence 34456788999999999999999999999999876431 11 0112221111
Q ss_pred CCccccccccCcccccccchhHH--H-HHHhhc------cCceEEEccccccCCCCCccccccchhccceeccCC----H
Q 012426 213 GLIDWSQDFFEKPAFLTVSGQLN--A-ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----L 279 (464)
Q Consensus 213 ~~~~~~~~~f~~~~yL~~Spql~--l-qll~~g------~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~----~ 279 (464)
-++.+-|+ |++= . |+++.- --|.|.++||||.|.....|-- ||+|+++|....+ -
T Consensus 73 ---------ggr~laLR--pe~Tapv~R~~~en~~~~~~p~k~yy~g~vfRyErPQ~GR~R-qF~Q~g~E~iG~~~~~~D 140 (429)
T COG0124 73 ---------GGRSLALR--PELTAPVARAVAENKLDLPKPLKLYYFGPVFRYERPQKGRYR-QFYQFGVEVIGSDSPDAD 140 (429)
T ss_pred ---------CCCEEEec--ccCcHHHHHHHHhccccccCCeeEEEecceecCCCCCCCCce-eeEEcCeEEeCCCCcccC
Confidence 02222222 2221 1 443321 2489999999999998767764 9999999998763 3
Q ss_pred HHHHHHHHHHHHHH
Q 012426 280 KDDMACATAYLQYV 293 (464)
Q Consensus 280 ~dlm~~~e~li~~i 293 (464)
-+++.++.++++.+
T Consensus 141 AEvi~l~~~~l~~l 154 (429)
T COG0124 141 AEVIALAVEILEAL 154 (429)
T ss_pred HHHHHHHHHHHHHc
Confidence 56666666666554
|
|
| >cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.01 Score=46.64 Aligned_cols=73 Identities=19% Similarity=0.328 Sum_probs=54.6
Q ss_pred EEEEEEEeeeec-CCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEE
Q 012426 32 IVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (464)
Q Consensus 32 V~v~GwV~~iR~-~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~ 110 (464)
++|.|-|.++|. .++++|+.|.|.++ .+.+++-++. ++..+. .|..|+.|.|+|.+...... +++.|.++++.
T Consensus 2 ~~v~g~v~~i~~tk~g~~~~~L~D~~~--~i~~~~f~~~--~~~~~~-~l~~g~~v~v~g~v~~~~~~-~~~~l~v~~i~ 75 (78)
T cd04489 2 VWVEGEISNLKRPSSGHLYFTLKDEDA--SIRCVMWRSN--ARRLGF-PLEEGMEVLVRGKVSFYEPR-GGYQLIVEEIE 75 (78)
T ss_pred EEEEEEEecCEECCCcEEEEEEEeCCe--EEEEEEEcch--hhhCCC-CCCCCCEEEEEEEEEEECCC-CEEEEEEEEEE
Confidence 688999999986 44599999999986 5999887652 333322 49999999999999864322 34788887764
|
E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis. |
| >cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0072 Score=47.46 Aligned_cols=73 Identities=15% Similarity=0.319 Sum_probs=55.0
Q ss_pred EEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEE
Q 012426 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVL 111 (464)
Q Consensus 32 V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~v 111 (464)
|+|.|=|.+.+..++-+|+.|+|+.+ .|.|++-+... ...... +..||-|.|.|.+.- +. +.+.+.++++++
T Consensus 1 v~v~GeVs~~~~~~GHvyfsLkD~~a--~i~cv~f~~~~-~~~~~~--l~~Gd~V~v~G~v~~-~~--G~~ql~v~~i~~ 72 (73)
T cd04487 1 VHIEGEVVQIKQTSGPTIFTLRDETG--TVWAAAFEEAG-VRAYPE--VEVGDIVRVTGEVEP-RD--GQLQIEVESLEV 72 (73)
T ss_pred CEEEEEEeccccCCCCEEEEEEcCCE--EEEEEEEchhc-cCCcCC--CCCCCEEEEEEEEec-CC--eEEEEEEeeEEE
Confidence 57889888775477779999999874 59998865432 111234 999999999999875 43 459999999987
Q ss_pred E
Q 012426 112 V 112 (464)
Q Consensus 112 l 112 (464)
|
T Consensus 73 ~ 73 (73)
T cd04487 73 L 73 (73)
T ss_pred C
Confidence 5
|
RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function. |
| >cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.016 Score=47.55 Aligned_cols=76 Identities=22% Similarity=0.292 Sum_probs=57.4
Q ss_pred EEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccch--hhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeE
Q 012426 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (464)
Q Consensus 32 V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~--~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i 109 (464)
|++.|+|.++...++-.=+.|.|+||. |-+.+....+.. ..... +..|+.|.|.|.+..-+ +...|.+..+
T Consensus 2 v~~vG~V~~~~~~~~~~~~tL~D~TG~--I~~~~W~~~~~~~~~~~~~--~~~g~~v~v~G~v~~~~---g~~ql~i~~i 74 (95)
T cd04478 2 VTLVGVVRNVEEQSTNITYTIDDGTGT--IEVRQWLDDDNDDSSEVEP--IEEGTYVRVFGNLKSFQ---GKKSIMAFSI 74 (95)
T ss_pred EEEEEEEEeeeEcccEEEEEEECCCCc--EEEEEeCCCCCcccccccc--cccCCEEEEEEEEcccC---CeeEEEEEEE
Confidence 789999999999876666789999984 998887554321 12345 99999999999997655 2367777777
Q ss_pred EEEec
Q 012426 110 VLVGK 114 (464)
Q Consensus 110 ~vls~ 114 (464)
..+..
T Consensus 75 ~~v~d 79 (95)
T cd04478 75 RPVTD 79 (95)
T ss_pred EEeCC
Confidence 76554
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam |
| >PRK04173 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0024 Score=67.68 Aligned_cols=48 Identities=23% Similarity=0.337 Sum_probs=37.5
Q ss_pred ceEEEccccccCCCCCcccc----ccchhccceeccCCHHHHHHHHHHHHHHHHH
Q 012426 245 NVYTFGPTFRAENSNTSRHL----AEFWMIEPELAFADLKDDMACATAYLQYVVR 295 (464)
Q Consensus 245 rVfeI~~~FR~E~~~t~rHl----~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~ 295 (464)
|+.|+|+|||+|.+ + +|- -||+|.|++ .|++-+++.+.+..++..+..
T Consensus 188 r~aq~g~~~RnE~s-~-~~gL~RvReF~q~e~h-iF~~peq~~~e~~~~l~~~~~ 239 (456)
T PRK04173 188 GIAQIGKSFRNEIT-P-RNFIFRTREFEQMELE-FFVKPGTDNEWFAYWIELRKN 239 (456)
T ss_pred eeeEEchhHhCccC-C-CCCceeeceeeeeEEE-EEECcChHHHHHHHHHHHHHH
Confidence 79999999999987 4 443 799999997 688877777776666655443
|
|
| >TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0011 Score=69.01 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=44.9
Q ss_pred CceEEEccccccCCCCCccccccchhccceeccC--CHHHHHHHHHHHHHHH
Q 012426 244 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 293 (464)
Q Consensus 244 ~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i 293 (464)
-|+|++|+|||+|...+.+|+++|+|+|.-++.. ++.|++.+++.|++.+
T Consensus 208 iRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~L 259 (533)
T TIGR00470 208 LKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQF 259 (533)
T ss_pred eEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 5899999999999643479999999999998886 5999999999999988
|
This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys. |
| >PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0043 Score=64.12 Aligned_cols=107 Identities=19% Similarity=0.173 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhhhCCcEEEeCceEeecCC--C-----CCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCc
Q 012426 152 NALAYATHKFFQENGFIWISSPIITASDC--E-----GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (464)
Q Consensus 152 s~i~~~~r~ff~~~gF~EV~TP~L~~~~~--e-----g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 224 (464)
..+.+.+++.|..+||.||.||++..... . ...++|.+.+.+ ++
T Consensus 8 ~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~~-----------------------------G~ 58 (373)
T PRK12295 8 AAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDEN-----------------------------GE 58 (373)
T ss_pred HHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECCC-----------------------------CC
Confidence 37889999999999999999999987431 1 112345443211 11
Q ss_pred ccccccchhHHH---HHHhh----ccCceEEEccccccCCCCCccccccchhccceeccC-C-H---HHHHHHHHHHHHH
Q 012426 225 PAFLTVSGQLNA---ETYAT----ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-D-L---KDDMACATAYLQY 292 (464)
Q Consensus 225 ~~yL~~Spql~l---qll~~----g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-~-~---~dlm~~~e~li~~ 292 (464)
.+-| =|++=. |+++. .--|.|.+|+|||.|.. | .-||+|+.+|.-.. + . -+++.++-+.++.
T Consensus 59 ~l~L--RpD~T~piaR~~~~~~~~~p~R~~Y~g~VfR~~~g---r-~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~ 132 (373)
T PRK12295 59 ELCL--RPDFTIPVCRRHIATAGGEPARYAYLGEVFRQRRD---R-ASEFLQAGIESFGRADPAAADAEVLALALEALAA 132 (373)
T ss_pred EEee--CCCCcHHHHHHHHHcCCCCCeEEEEEccEEECCCC---C-CCcceEeeEEeeCCCCCccchHHHHHHHHHHHHH
Confidence 1112 122211 22222 23489999999999922 2 46999999999774 3 2 3677777766655
Q ss_pred H
Q 012426 293 V 293 (464)
Q Consensus 293 i 293 (464)
+
T Consensus 133 l 133 (373)
T PRK12295 133 L 133 (373)
T ss_pred c
Confidence 4
|
|
| >PLN02678 seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0056 Score=64.49 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=30.7
Q ss_pred hhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC
Q 012426 146 AVARVRNALAYATHKFFQENGFIWISSPIITASD 179 (464)
Q Consensus 146 ~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~ 179 (464)
...+++.+|++.+++++.++||.||.||.|....
T Consensus 172 ~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~ 205 (448)
T PLN02678 172 AGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKD 205 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECcccccHH
Confidence 5688999999999999999999999999998743
|
|
| >cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1) | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.04 Score=45.26 Aligned_cols=70 Identities=20% Similarity=0.356 Sum_probs=51.5
Q ss_pred EEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccch-------------------hhhhcCCCCCCcEEEEEEEEEe
Q 012426 34 VAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY-------------------DQVKSGLITTGASIWIQGNVVP 94 (464)
Q Consensus 34 v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~-------------------~~~~~~~l~~g~~V~V~G~v~~ 94 (464)
|.|+|.+++......-+.|.|+||. |-|++-.....- +.... +.+|++|.|.|.+..
T Consensus 2 ivG~V~sv~~~~~~~~~tLdDgTG~--Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~G~vvrV~G~i~~ 77 (92)
T cd04483 2 ILGTVVSRRERETFYSFGVDDGTGV--VNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKV--LEIGDLLRVRGSIRT 77 (92)
T ss_pred eEEEEEEEEecCCeEEEEEecCCce--EEEEEEcCcCcccccccccccccccccccccccccc--cCCCCEEEEEEEEec
Confidence 6799999998877777889999984 888887543200 22445 999999999999987
Q ss_pred CCCCCceEEEEEeeEE
Q 012426 95 SQGSKQKVELKVNKIV 110 (464)
Q Consensus 95 ~~~~~~~~el~~~~i~ 110 (464)
=++. ..|.++.+.
T Consensus 78 frg~---~ql~i~~~~ 90 (92)
T cd04483 78 YRGE---REINASVVY 90 (92)
T ss_pred cCCe---eEEEEEEEE
Confidence 6532 566666553
|
Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization. |
| >COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0099 Score=63.23 Aligned_cols=119 Identities=19% Similarity=0.207 Sum_probs=86.4
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-------CC-CCCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-------EG-AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-------eg-~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
+.--++++.+|.+.+|+.|++-|..||.-|.|+++.- ++ +.++|.+++.+
T Consensus 43 lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v~drg---------------------- 100 (500)
T COG0442 43 LPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVKDRG---------------------- 100 (500)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcchhhEEEEccC----------------------
Confidence 4456899999999999999999999999999999431 22 34677776422
Q ss_pred cccccccCcccccccchhHHH-HHHh---hc---c-CceEEEccccccCCCCC--ccccccchhccceeccCCHHHHHHH
Q 012426 216 DWSQDFFEKPAFLTVSGQLNA-ETYA---TA---L-SNVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADLKDDMAC 285 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~Spql~l-qll~---~g---~-~rVfeI~~~FR~E~~~t--~rHl~EFtmlE~e~a~~~~~dlm~~ 285 (464)
++++.|+...|--. -++. .+ + =++|||...||+|.-.+ ---.-||+|=|.|..+.|.+++...
T Consensus 101 -------~~~l~L~PTsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~ 173 (500)
T COG0442 101 -------DRPLALRPTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEET 173 (500)
T ss_pred -------CceeeeCCCcHHHHHHHHHHHhhhhhhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHH
Confidence 34555554444333 2322 22 2 47999999999996421 1135699999999999999999988
Q ss_pred HHHHHH
Q 012426 286 ATAYLQ 291 (464)
Q Consensus 286 ~e~li~ 291 (464)
.++++.
T Consensus 174 y~~~~~ 179 (500)
T COG0442 174 YEKMLD 179 (500)
T ss_pred HHHHHH
Confidence 888774
|
|
| >PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.035 Score=46.22 Aligned_cols=77 Identities=17% Similarity=0.281 Sum_probs=59.3
Q ss_pred CCEEEEEEEEeeeec-CCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEe
Q 012426 29 GLMIVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (464)
Q Consensus 29 ~~~V~v~GwV~~iR~-~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~ 107 (464)
-+.|+|.|=|.+.+. .++-+|++|.|+. ..|+|++-+.. +..+....+..|+-|.|.|.+.--+.. +.+.+.+.
T Consensus 21 ~~~vwV~GEIs~~~~~~~gh~YftLkD~~--a~i~~~~~~~~--~~~i~~~~l~~G~~V~v~g~~~~y~~~-G~~sl~v~ 95 (99)
T PF13742_consen 21 LPNVWVEGEISNLKRHSSGHVYFTLKDEE--ASISCVIFRSR--ARRIRGFDLKDGDKVLVRGRVSFYEPR-GSLSLIVE 95 (99)
T ss_pred cCCEEEEEEEeecEECCCceEEEEEEcCC--cEEEEEEEHHH--HhhCCCCCCCCCCEEEEEEEEEEECCC-cEEEEEEE
Confidence 378999999999999 5889999999987 46999998643 222220129999999999999765443 34888888
Q ss_pred eEE
Q 012426 108 KIV 110 (464)
Q Consensus 108 ~i~ 110 (464)
+|+
T Consensus 96 ~i~ 98 (99)
T PF13742_consen 96 DID 98 (99)
T ss_pred EeE
Confidence 764
|
|
| >PLN02320 seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.01 Score=63.06 Aligned_cols=119 Identities=17% Similarity=0.178 Sum_probs=72.8
Q ss_pred hhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc---
Q 012426 147 VARVRNALAYATHKFFQENGFIWISSPIITASD-CEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF--- 222 (464)
Q Consensus 147 ~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f--- 222 (464)
..++..++++.++++..++||.||.||.|.... .++.+. + ....+ ...|
T Consensus 232 ~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~-~-p~~e~-------------------------~~~y~ie 284 (502)
T PLN02320 232 AVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGF-Q-PRGDN-------------------------TQVYSID 284 (502)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCC-C-ccccc-------------------------CceeEEC
Confidence 444667888889998899999999999999854 344332 1 00000 0000
Q ss_pred Ccccccccchh-----HHH-HHHh-hcc-CceEEEccccccCCCCCcc------ccccchhccceeccCCHHHHHHHHHH
Q 012426 223 EKPAFLTVSGQ-----LNA-ETYA-TAL-SNVYTFGPTFRAENSNTSR------HLAEFWMIEPELAFADLKDDMACATA 288 (464)
Q Consensus 223 ~~~~yL~~Spq-----l~l-qll~-~g~-~rVfeI~~~FR~E~~~t~r------Hl~EFtmlE~e~a~~~~~dlm~~~e~ 288 (464)
+...||.-..| +|. +.+. ..+ =|++++++|||.|.+...+ =.-+|+++|... |..-++..+..++
T Consensus 285 ~ed~~Li~TaE~Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~i-f~~peqs~~e~e~ 363 (502)
T PLN02320 285 GSDQCLIGTAEIPVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFV-ICRPEESESFHEE 363 (502)
T ss_pred CCceEEeecccccccccccccccCHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEE-EECHHHHHHHHHH
Confidence 23345532222 344 3321 223 4899999999999662111 223799999976 6667777777777
Q ss_pred HHHHH
Q 012426 289 YLQYV 293 (464)
Q Consensus 289 li~~i 293 (464)
|+..+
T Consensus 364 ll~~~ 368 (502)
T PLN02320 364 LIQIE 368 (502)
T ss_pred HHHHH
Confidence 77554
|
|
| >TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.021 Score=59.89 Aligned_cols=32 Identities=9% Similarity=0.151 Sum_probs=27.7
Q ss_pred ceEEEccccccCCCCCccccccchhccceeccC
Q 012426 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 277 (464)
Q Consensus 245 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~ 277 (464)
++...|.|||.+..| .+|.|-|+|+|.-+.+.
T Consensus 135 ~~i~~G~VYRrD~iD-atH~p~FHQ~EG~~v~~ 166 (460)
T TIGR00469 135 GFLISADVYRRDEID-KTHYPVFHQADGAAIRK 166 (460)
T ss_pred eeEeecceeeCCCCc-cccCccceeeEEEEEec
Confidence 388999999999996 89999999999665553
|
Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species. |
| >cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.053 Score=44.41 Aligned_cols=74 Identities=19% Similarity=0.408 Sum_probs=54.7
Q ss_pred EEEEEEEeeeec--CCCeEEEEEEeCcCCcceEEEEeCCccchhh-hhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEee
Q 012426 32 IVVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (464)
Q Consensus 32 V~v~GwV~~iR~--~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~-~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~ 108 (464)
++|.|.|.+++. .|+-+|+.|.|+++ .|.+++=+....+.. ... |..||-|.|.|.+..-. .|.+++
T Consensus 1 ~~v~GeVs~~~~~~~sGH~yFtlkD~~~--~i~cv~f~~~g~~~~~~~~--l~~Gd~V~v~G~v~~y~------ql~ve~ 70 (91)
T cd04482 1 YRVTGKVVEEPRTIEGGHVFFKISDGTG--EIDCAAYEPTKEFRDVVRL--LIPGDEVTVYGSVRPGT------TLNLEK 70 (91)
T ss_pred CEEEEEEeCCeecCCCCCEEEEEECCCc--EEEEEEECcccccccccCC--CCCCCEEEEEEEEecCC------EEEEEE
Confidence 378999998865 46789999999885 488877544311222 245 99999999999986543 588888
Q ss_pred EEEEecC
Q 012426 109 IVLVGKS 115 (464)
Q Consensus 109 i~vls~~ 115 (464)
+++++..
T Consensus 71 l~~~glg 77 (91)
T cd04482 71 LRVIRLA 77 (91)
T ss_pred EEECCCc
Confidence 8887654
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende |
| >COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.011 Score=61.51 Aligned_cols=114 Identities=18% Similarity=0.308 Sum_probs=67.2
Q ss_pred hhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc---
Q 012426 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF--- 222 (464)
Q Consensus 147 ~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f--- 222 (464)
+.++--++++.+=++..++||+|+.+|.|..... -|.+.. .. ++.+.|
T Consensus 173 ~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgql--pk--------------------------f~e~~y~v~ 224 (429)
T COG0172 173 GARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQL--PK--------------------------FEEDLYKVE 224 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCC--CC--------------------------CcccceEec
Confidence 3445555566666666789999999999998553 222221 00 011222
Q ss_pred CcccccccchhHHH-HHHhh------cc-CceEEEccccccCCCCC--------ccccccchhccceeccCCHHHHHHHH
Q 012426 223 EKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNT--------SRHLAEFWMIEPELAFADLKDDMACA 286 (464)
Q Consensus 223 ~~~~yL~~Spql~l-qll~~------g~-~rVfeI~~~FR~E~~~t--------~rHl~EFtmlE~e~a~~~~~dlm~~~ 286 (464)
+..+||....+.-+ .++.. .+ -+++-.+||||.|.... +.| +|.++|.-. |..-++-....
T Consensus 225 ~~~~~LipTaEvpl~~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvH--QF~KVE~v~-~~~Pe~S~~~~ 301 (429)
T COG0172 225 DPDLYLIPTAEVPLTNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVH--QFDKVELVV-ITKPEESEEEL 301 (429)
T ss_pred CCCEEEEecchhhhHHhhcccccccccCCeeeEEEChhhhcccccccccccceeeee--eeeeEEEEE-EeCcchhHHHH
Confidence 12467877776666 34322 23 36778899999996521 235 899999843 55455555555
Q ss_pred HHHHH
Q 012426 287 TAYLQ 291 (464)
Q Consensus 287 e~li~ 291 (464)
|+|+.
T Consensus 302 E~m~~ 306 (429)
T COG0172 302 EEMLG 306 (429)
T ss_pred HHHHH
Confidence 55553
|
|
| >TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.028 Score=59.65 Aligned_cols=143 Identities=11% Similarity=0.030 Sum_probs=82.1
Q ss_pred hhhhhHHHHHHHHHHHHh-hhCCcEEEeCceEeecCC---CCCCC-----CceeeecCCCcccccCCCCCCCCCCC--CC
Q 012426 145 GAVARVRNALAYATHKFF-QENGFIWISSPIITASDC---EGAGE-----QFCVTTLIPSSREAAESPVDAIPKTK--DG 213 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff-~~~gF~EV~TP~L~~~~~---eg~~~-----~F~vt~~~~~~~~~~~~~~~~~~~~~--~~ 213 (464)
....++..++.+.+.+++ .+.||.||.+|.|.+... ++.-+ +|.|++... +.+..+...... ++
T Consensus 220 p~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~Vt~~~~-----d~d~~~~f~~~~~~~~ 294 (520)
T TIGR00415 220 PKITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKR-----DPELFEEFKNELIIKK 294 (520)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEEecCCC-----Ccchhhcccccccccc
Confidence 345667777888886555 556999999999998432 23333 333432110 000000000000 00
Q ss_pred Ccc---ccccccCcccccccchhHHH-HHHhh------cc-CceEEEc-cccccCCCC--CccccccchhccceeccCCH
Q 012426 214 LID---WSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFG-PTFRAENSN--TSRHLAEFWMIEPELAFADL 279 (464)
Q Consensus 214 ~~~---~~~~~f~~~~yL~~Spql~l-qll~~------g~-~rVfeI~-~~FR~E~~~--t~rHl~EFtmlE~e~a~~~~ 279 (464)
.+. .+...-..+++|+.+.+..+ .+++. .+ -++|+++ +|||.|... .-.=.-||+|.|.-. +.+.
T Consensus 295 eipi~~L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~-~~tp 373 (520)
T TIGR00415 295 EIPIDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW-IAEP 373 (520)
T ss_pred ccccccccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-EeCH
Confidence 000 00000122566888888777 44432 22 4789955 799999852 222345999999988 8899
Q ss_pred HHHHHHHHHHHHHH
Q 012426 280 KDDMACATAYLQYV 293 (464)
Q Consensus 280 ~dlm~~~e~li~~i 293 (464)
++..+..++++...
T Consensus 374 Eea~e~~e~mle~~ 387 (520)
T TIGR00415 374 EETEEIRDKTLELA 387 (520)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888543
|
The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases. |
| >PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.075 Score=51.97 Aligned_cols=78 Identities=17% Similarity=0.283 Sum_probs=55.4
Q ss_pred CCEEEEEEEEeeeecC----CCeEEEEEEeCcCCcceEEEEeCCccc-h-hhhhcCCCCCCcEEEEEEEEEeCCCCCceE
Q 012426 29 GLMIVVAGWVRTLRAQ----SSVTFIEVNDGSCLSNMQCVMTSDAEG-Y-DQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (464)
Q Consensus 29 ~~~V~v~GwV~~iR~~----g~~~Fi~LrD~sg~~~iQvv~~~~~~~-~-~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (464)
=+.|+|.|.|.++... .+.+|+.|-|+||...|.|++...... . -.+.. + .|++|.|.|.+. . +..
T Consensus 66 I~~v~i~G~Vv~~~~~~~~~~~~~~l~iDD~Sg~~~i~~~~~~~~~~~~~l~~~~--~-~G~~V~VkG~vs---r--~~~ 137 (256)
T PF10451_consen 66 IRWVRIVGVVVGIDYKWIENEDRIILTIDDSSGANTIECKCSKSSYLSMGLPIND--L-IGKVVEVKGTVS---R--NER 137 (256)
T ss_dssp E-EEEEEEEEEEEEEEE-BBTCEEEEEEE-SSCS-EEEEEEEHHHHHCCCHHCTT----TT-EEEEEEEEE---S--SSE
T ss_pred cEEEEEEEEEEEEEEEeecccceEEEEEeCCCCceeEEEEEEcccccccCCCccC--C-CCcEEEEEEEEc---c--CcE
Confidence 4679999999999865 789999999999832588988854210 0 11334 6 999999999998 2 347
Q ss_pred EEEEeeEEEEec
Q 012426 103 ELKVNKIVLVGK 114 (464)
Q Consensus 103 el~~~~i~vls~ 114 (464)
+|.++.+.++..
T Consensus 138 ql~ve~i~~~~~ 149 (256)
T PF10451_consen 138 QLDVERIELVRD 149 (256)
T ss_dssp EEEEEEEEEETS
T ss_pred EEEEEEEEccCC
Confidence 899998887753
|
Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A. |
| >PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.068 Score=52.83 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=28.5
Q ss_pred hhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC
Q 012426 146 AVARVRNALAYATHKFFQENGFIWISSPIITASD 179 (464)
Q Consensus 146 ~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~ 179 (464)
..+..+..+.+.+++.|..+||-+|.||++-..+
T Consensus 5 ~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d 38 (272)
T PRK12294 5 EQLIALKESETAFLKYFNKADYELVDFSVIEKLD 38 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhHH
Confidence 3455677888999999999999999999997643
|
|
| >PRK00960 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.019 Score=61.37 Aligned_cols=143 Identities=12% Similarity=0.048 Sum_probs=76.7
Q ss_pred chhhhhHHHHHHHHHHHH-hhhCCcEEEeCceEeecCC---CCCC-----CCceeeecC-CCcccccCC----CCCCCCC
Q 012426 144 FGAVARVRNALAYATHKF-FQENGFIWISSPIITASDC---EGAG-----EQFCVTTLI-PSSREAAES----PVDAIPK 209 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~f-f~~~gF~EV~TP~L~~~~~---eg~~-----~~F~vt~~~-~~~~~~~~~----~~~~~~~ 209 (464)
.....++...+.+.+++. ..+.||.||.||.|.+... .|.- ++|.|++.. ....+.+.. +...++-
T Consensus 219 ~p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl 298 (517)
T PRK00960 219 TPPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPI 298 (517)
T ss_pred EChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhccccccccc
Confidence 345678888888888876 4566999999999998432 2322 344443210 000000000 0000000
Q ss_pred CCCCCccccccccCcccccccchhHHH-HHHhh----ccC---ceEE-EccccccCCC--CCccccccchhccceeccCC
Q 012426 210 TKDGLIDWSQDFFEKPAFLTVSGQLNA-ETYAT----ALS---NVYT-FGPTFRAENS--NTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 210 ~~~~~~~~~~~~f~~~~yL~~Spql~l-qll~~----g~~---rVfe-I~~~FR~E~~--~t~rHl~EFtmlE~e~a~~~ 278 (464)
. +.....-+....|+.+...+. -+... .-+ |+|+ .|+|||+|.. ++-.=.-||+|.|.- .|++
T Consensus 299 ~-----~~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~t 372 (517)
T PRK00960 299 E-----KLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLGT 372 (517)
T ss_pred c-----ccccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEeC
Confidence 0 000000011223433333333 22221 112 7899 5599999952 222233499999998 7889
Q ss_pred HHHHHHHHHHHHHH
Q 012426 279 LKDDMACATAYLQY 292 (464)
Q Consensus 279 ~~dlm~~~e~li~~ 292 (464)
-+++.+..++++.+
T Consensus 373 pEqs~ee~e~ll~~ 386 (517)
T PRK00960 373 PEQVEEIRDELLKY 386 (517)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999844
|
|
| >cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.18 Score=37.88 Aligned_cols=68 Identities=18% Similarity=0.396 Sum_probs=50.1
Q ss_pred EEEEEEeeeecCC---CeEEEEEEeCc-CCcceEEEEeCCccchhhh-hcCCCCCCcEEEEEEEEEeCCCCCceEEEEEe
Q 012426 33 VVAGWVRTLRAQS---SVTFIEVNDGS-CLSNMQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (464)
Q Consensus 33 ~v~GwV~~iR~~g---~~~Fi~LrD~s-g~~~iQvv~~~~~~~~~~~-~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~ 107 (464)
++.|.|.+++... ..+++.|.|++ + .+.+++-.+. +... .. +..|+.|.|.|++.... +...+.+.
T Consensus 1 ~v~g~v~~~~~~~~~~~~~~~~l~D~~~~--~i~~~~~~~~--~~~~~~~--~~~g~~v~v~g~v~~~~---~~~~l~~~ 71 (75)
T cd03524 1 TIVGIVVAVEEIRTEGKVLIFTLTDGTGG--TIRVTLFGEL--AEELENL--LKEGQVVYIKGKVKKFR---GRLQLIVE 71 (75)
T ss_pred CeEEEEEeecccccCCeEEEEEEEcCCCC--EEEEEEEchH--HHHHHhh--ccCCCEEEEEEEEEecC---CeEEEEee
Confidence 3688898887764 78999999999 5 4888887642 2222 34 99999999999997643 33666665
Q ss_pred eE
Q 012426 108 KI 109 (464)
Q Consensus 108 ~i 109 (464)
++
T Consensus 72 ~~ 73 (75)
T cd03524 72 SI 73 (75)
T ss_pred ee
Confidence 44
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco |
| >cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.29 Score=38.98 Aligned_cols=57 Identities=19% Similarity=0.316 Sum_probs=44.3
Q ss_pred EEEEEEEeeeecC--CCeEEEEEEeCcCCcceEEEEeCCccchh--hhhcCCCCCCcEEEEEEEEEe
Q 012426 32 IVVAGWVRTLRAQ--SSVTFIEVNDGSCLSNMQCVMTSDAEGYD--QVKSGLITTGASIWIQGNVVP 94 (464)
Q Consensus 32 V~v~GwV~~iR~~--g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~--~~~~~~l~~g~~V~V~G~v~~ 94 (464)
|.++|-|.++|.. |+. |+.|.|.+|. +.+++-++ .|+ ..+. .|..+.+|.|+|++..
T Consensus 2 v~i~GiI~~v~~TK~g~~-~~~leD~~G~--~Ev~~F~~--~~~~~~~~~-~l~~d~~v~v~g~v~~ 62 (79)
T cd04490 2 VSIIGMVNDVRSTKNGHR-IVELEDTTGR--ITVLLTKD--KEELFEEAE-DILPDEVIGVSGTVSK 62 (79)
T ss_pred EEEEEEEeEEEEcCCCCE-EEEEECCCCE--EEEEEeCc--hhhhhhhhh-hccCCCEEEEEEEEec
Confidence 6889999998732 556 9999999984 99998765 344 4332 4899999999999954
|
PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain. |
| >COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.06 Score=57.24 Aligned_cols=79 Identities=15% Similarity=0.308 Sum_probs=56.9
Q ss_pred CCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEE
Q 012426 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELK 105 (464)
Q Consensus 26 ~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~ 105 (464)
+..|++|+|.|-|..++.-++-+-+.|+|++|. +++-.=.. .+...... +.+||+|.|.|.|....+. +.|.
T Consensus 210 ~~ig~tV~I~GeV~qikqT~GPTVFtltDetg~--i~aAAFe~-aGvRAyP~--IevGdiV~ViG~V~~r~g~---lQiE 281 (715)
T COG1107 210 EMIGKTVRIEGEVTQIKQTSGPTVFTLTDETGA--IWAAAFEE-AGVRAYPE--IEVGDIVEVIGEVTRRDGR---LQIE 281 (715)
T ss_pred hhcCceEEEEEEEEEEEEcCCCEEEEEecCCCc--eehhhhcc-CCcccCCC--CCCCceEEEEEEEeecCCc---EEEe
Confidence 378999999999999999877777789999985 77642111 11111235 9999999999999887643 5555
Q ss_pred EeeEEEE
Q 012426 106 VNKIVLV 112 (464)
Q Consensus 106 ~~~i~vl 112 (464)
+.+++.|
T Consensus 282 ~~~me~L 288 (715)
T COG1107 282 IEAMEKL 288 (715)
T ss_pred ehhhHHh
Confidence 5556554
|
|
| >PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif) | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.18 Score=42.26 Aligned_cols=81 Identities=15% Similarity=0.259 Sum_probs=51.3
Q ss_pred ceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEE
Q 012426 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90 (464)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G 90 (464)
..++++++.. ..++.|++.|.|.+.-..- - ...+|++| .|+|-++.+. |. -.. +++++-|.+.|
T Consensus 22 ~~TV~~a~~~------~Dd~~V~L~G~Iv~~l~~d--~-Y~F~D~TG--~I~VeId~~~--w~-g~~--vt~~~~Vri~G 85 (103)
T PF04076_consen 22 VTTVAQAKNA------KDDTPVTLEGNIVKQLGDD--K-YLFRDATG--EIEVEIDDDV--WR-GQT--VTPDDKVRISG 85 (103)
T ss_dssp ---HHHHTTS-------SSEEEEEEEEEEEEEETT--E-EEEEETTE--EEEEE--GGG--ST-T------TTSEEEEEE
T ss_pred eEeHHHHhhC------cCCCeEEEEEEEEEEecCC--E-EEEECCCC--cEEEEEChhh--cC-Ccc--cCCCCEEEEEE
Confidence 3567777653 5689999999986554332 2 44899998 4999888652 11 123 89999999999
Q ss_pred EEEeCCCCCceEEEEEeeEE
Q 012426 91 NVVPSQGSKQKVELKVNKIV 110 (464)
Q Consensus 91 ~v~~~~~~~~~~el~~~~i~ 110 (464)
+|-+.-. ..+|.|..|+
T Consensus 86 eVDk~~~---~~~IdV~~I~ 102 (103)
T PF04076_consen 86 EVDKDWN---KTEIDVDRIE 102 (103)
T ss_dssp EEEEETT---EEEEEEEEEE
T ss_pred EEeCCCC---ceEEEEEEEE
Confidence 9996542 3788887764
|
Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A. |
| >KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.089 Score=52.98 Aligned_cols=125 Identities=23% Similarity=0.186 Sum_probs=79.8
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CCC-------CCCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CEG-------AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~eg-------~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
+.-.+|.-.++++.++.-|++-|=.+|.-|+|++.. ++. +.++|.+.+.+
T Consensus 48 LPlg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl~Dr~---------------------- 105 (457)
T KOG2324|consen 48 LPLGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRLHDRK---------------------- 105 (457)
T ss_pred ccchHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEeeccC----------------------
Confidence 344578889999999999999999999999999843 332 45666653211
Q ss_pred cccccccCcccccccchhHHH-HHHhhcc--------CceEEEccccccCCCC--CccccccchhccceeccCCHHHHHH
Q 012426 216 DWSQDFFEKPAFLTVSGQLNA-ETYATAL--------SNVYTFGPTFRAENSN--TSRHLAEFWMIEPELAFADLKDDMA 284 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~Spql~l-qll~~g~--------~rVfeI~~~FR~E~~~--t~rHl~EFtmlE~e~a~~~~~dlm~ 284 (464)
++...|+..-|=-- .+|+.-. =+|||||+=||+|--- +-----||.|=|.|.=..|-++.|+
T Consensus 106 -------gkq~cL~pThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYsFd~~~etA~q 178 (457)
T KOG2324|consen 106 -------GKQMCLTPTHEEDITALMATYIPLSYKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYSFDSDEETAQQ 178 (457)
T ss_pred -------CCEeccCCchHHHHHHHHHhcCccccccCcEEeeeechhhhhccCccccchhhHHHHHhhhhcccCCHHHHHH
Confidence 34444554443333 4555433 2899999999999420 1112249999999973334555554
Q ss_pred HHHHHHHHHHHHHh
Q 012426 285 CATAYLQYVVRYIL 298 (464)
Q Consensus 285 ~~e~li~~i~~~~~ 298 (464)
+-.++..+...+.
T Consensus 179 -Ty~~v~~aY~~iF 191 (457)
T KOG2324|consen 179 -TYQLVDQAYDRIF 191 (457)
T ss_pred -HHHHHHHHHHHHH
Confidence 3344444444444
|
|
| >COG3111 Periplasmic protein with OB-fold [Function unknown] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.22 Score=42.62 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=53.3
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEE
Q 012426 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (464)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~ 106 (464)
..+..|++.|-|.+. .|.=.| ..||+|| .|+|.++.+. +....+++.|-|.+.|++-+.-. ..||.|
T Consensus 55 ~Dda~V~l~GnIv~q--i~~D~y-~FrD~sG--eI~VeIdd~~-----w~g~tv~P~dkV~I~GevDk~~~---~~eIdV 121 (128)
T COG3111 55 HDDAWVSLEGNIVRQ--IGDDRY-VFRDASG--EINVDIDDKV-----WNGQTVTPKDKVRIQGEVDKDWN---SVEIDV 121 (128)
T ss_pred ccCCeEEEEeeEEEe--eCCceE-EEEcCCc--cEEEEecccc-----cCCcccCcccEEEEEeEEcCCCc---cceeEh
Confidence 567899999998543 333344 4899998 5999998653 11123999999999999977532 378888
Q ss_pred eeEEEE
Q 012426 107 NKIVLV 112 (464)
Q Consensus 107 ~~i~vl 112 (464)
..|+.+
T Consensus 122 ~~I~k~ 127 (128)
T COG3111 122 KHIEKL 127 (128)
T ss_pred hheEec
Confidence 888765
|
|
| >COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.17 Score=47.08 Aligned_cols=97 Identities=12% Similarity=0.207 Sum_probs=66.7
Q ss_pred ccceecccccCCCCC--C-----CCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccc-hhhhhcCCC
Q 012426 9 RKKLKIVDVKGGPNE--G-----LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLI 80 (464)
Q Consensus 9 ~~~~~i~~l~~~~~~--~-----~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~-~~~~~~~~l 80 (464)
.+.++|++|+..... + ...+-..|++-|||.++..+-.-+|+.|.||+|. |-|-..+.... .++.+. +
T Consensus 39 LrpvTIKQIl~~~qd~~d~~f~vd~~Ev~~V~fVGvvrni~~~ttn~~~~iEDGTG~--Ievr~W~~~~~~~e~~~d--~ 114 (258)
T COG5235 39 LRPVTIKQILSCDQDETDSTFLVDSAEVTNVQFVGVVRNIKTSTTNSMFVIEDGTGS--IEVRFWPGNSYEEEQCKD--L 114 (258)
T ss_pred eeeeEHHHhhcccccccCCceeecceEEeeEEEEEEEEeeeecccceEEEEecCCce--EEEEecCCCchHHHhccc--c
Confidence 456889999874211 0 0111235889999999999988899999999985 88877665432 233456 7
Q ss_pred CCCcEEEEEEEEEeCCCCCceEEEEEeeEEEE
Q 012426 81 TTGASIWIQGNVVPSQGSKQKVELKVNKIVLV 112 (464)
Q Consensus 81 ~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vl 112 (464)
.-|-.|.|.|.++.=.+ +..|.+..|.-+
T Consensus 115 ~~~~yvkV~G~lk~F~G---K~~I~~~~i~~I 143 (258)
T COG5235 115 EEQNYVKVNGSLKTFNG---KRSISASHISAI 143 (258)
T ss_pred ccccEEEEecceeeeCC---eeEEehhheeec
Confidence 78889999999976543 356666554433
|
|
| >TIGR00156 conserved hypothetical protein TIGR00156 | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.26 Score=42.78 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=56.3
Q ss_pred eecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEE
Q 012426 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (464)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~ 91 (464)
.+++++++. ..+..|++.|.|.+.-..- - ...+|++|. |+|-++.+. +....++++|-|.+.|+
T Consensus 46 ~tV~~a~~~------~Ddt~V~L~G~Iv~~l~~d--~-Y~F~D~TG~--I~VeId~~~-----w~G~~v~p~d~V~I~Ge 109 (126)
T TIGR00156 46 MTVDFAKSM------HDGASVTLRGNIISHIGDD--R-YVFRDKSGE--INVVIPAAV-----WNGREVQPKDMVNISGS 109 (126)
T ss_pred EeHHHHhhC------CCCCEEEEEEEEEEEeCCc--e-EEEECCCCC--EEEEECHHH-----cCCCcCCCCCEEEEEEE
Confidence 456666553 5688999999996654432 2 448999984 999887542 22123899999999999
Q ss_pred EEeCCCCCceEEEEEeeEE
Q 012426 92 VVPSQGSKQKVELKVNKIV 110 (464)
Q Consensus 92 v~~~~~~~~~~el~~~~i~ 110 (464)
|-+.-. ..||.|.+|+
T Consensus 110 VDk~~~---~~~IdV~~I~ 125 (126)
T TIGR00156 110 LDKKSA---PAEVDVTHIQ 125 (126)
T ss_pred ECCCCC---CeEEEEEEEE
Confidence 985432 2688887765
|
As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae. |
| >cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE) | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.25 Score=38.47 Aligned_cols=71 Identities=20% Similarity=0.370 Sum_probs=49.2
Q ss_pred EEEEEeeeec----CC-CeEEEEEEeCcCCcceEEEEeCCccchhhh-hcCCCCCCcEEEEEEEEEeCCCCCceEEEEEe
Q 012426 34 VAGWVRTLRA----QS-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (464)
Q Consensus 34 v~GwV~~iR~----~g-~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~-~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~ 107 (464)
+.|.|.+++. .| .++|+.|.|++|. +.+++-.+ .|+.. .. +..|..|.|.|++.... +..++.+.
T Consensus 2 i~g~v~~~~~~~~k~g~~~~~~~l~D~tg~--~~~~~f~~--~~~~~~~~--l~~g~~v~v~G~v~~~~---~~~~l~~~ 72 (84)
T cd04485 2 VAGLVTSVRRRRTKKGKRMAFVTLEDLTGS--IEVVVFPE--TYEKYRDL--LKEDALLLVEGKVERRD---GGLRLIAE 72 (84)
T ss_pred EEEEEEEeEEEEcCCCCEEEEEEEEeCCCe--EEEEECHH--HHHHHHHH--hcCCCEEEEEEEEEecC---CceEEEee
Confidence 5666655432 23 4899999999975 88887643 34333 34 99999999999997743 34788887
Q ss_pred eEEEEe
Q 012426 108 KIVLVG 113 (464)
Q Consensus 108 ~i~vls 113 (464)
++..+.
T Consensus 73 ~i~~~~ 78 (84)
T cd04485 73 RIEDLE 78 (84)
T ss_pred ccccHH
Confidence 665443
|
The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis. |
| >PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.15 Score=45.02 Aligned_cols=82 Identities=16% Similarity=0.249 Sum_probs=47.5
Q ss_pred eecccccCCCCC-----CCCCCCCEEEEEEEEeeeecC-CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcE
Q 012426 12 LKIVDVKGGPNE-----GLDRVGLMIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGAS 85 (464)
Q Consensus 12 ~~i~~l~~~~~~-----~~~~~~~~V~v~GwV~~iR~~-g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~ 85 (464)
.+..+|.+.|.+ .....|+.|.|.|.|.+++.. ++-.++...+..+...++|.++.+......... |..||-
T Consensus 45 ~sa~~L~~~y~~N~~~A~~kY~gK~i~vtG~V~~I~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--l~~G~~ 122 (144)
T PF12869_consen 45 VSAEELYKDYKDNEVAADKKYKGKIIEVTGTVSSIDKGFGDNYVVLLGTENGFAGVQCYFSNDQEKRASVAK--LKKGQK 122 (144)
T ss_dssp EEHHHHHHHHHH-HHHHHHHHTT-EEEEEEEEEEEEE-STT-EEEEEE-TT-S-S--EEEEEEGGGHHHHHH----TTSE
T ss_pred ecHHHHHHHHHhCHHHHHhhcCCCEEEEEEEEEEEEEcCCCcEEEEccCCCCceeEEEEEccchhhhhhHhc--CCCCCE
Confidence 444555554421 224579999999999999773 555677677755556799999876533333456 999999
Q ss_pred EEEEEEEEeC
Q 012426 86 IWIQGNVVPS 95 (464)
Q Consensus 86 V~V~G~v~~~ 95 (464)
|.|+|++..-
T Consensus 123 Vti~G~~~g~ 132 (144)
T PF12869_consen 123 VTIKGICTGY 132 (144)
T ss_dssp EEEEEE----
T ss_pred EEEEEEEEee
Confidence 9999998654
|
; PDB: 3F1Z_I. |
| >PRK07373 DNA polymerase III subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.26 Score=52.19 Aligned_cols=78 Identities=17% Similarity=0.288 Sum_probs=59.3
Q ss_pred CCCCEEEEEEEEeeeecC----C-CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCce
Q 012426 27 RVGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (464)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~----g-~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~ 101 (464)
..++.|+|.|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|++.+. +|..|.+|.|+|++.... +.
T Consensus 278 ~~~~~v~vaG~I~~ik~~~TKkG~~maf~~leD~tG~--ie~vvFp~--~y~~~~~-~l~~~~~v~v~G~v~~~~---~~ 349 (449)
T PRK07373 278 KEKTKVSAVVMLNEVKKIVTKKGDPMAFLQLEDLSGQ--SEAVVFPK--SYERISE-LLQVDARLIIWGKVDRRD---DQ 349 (449)
T ss_pred cCCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCC--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecC---Ce
Confidence 357889999999999864 2 4999999999985 99988754 3555443 499999999999997632 34
Q ss_pred EEEEEeeEEEE
Q 012426 102 VELKVNKIVLV 112 (464)
Q Consensus 102 ~el~~~~i~vl 112 (464)
+.+.+.++.-+
T Consensus 350 ~~liv~~i~~l 360 (449)
T PRK07373 350 VQLIVEDAEPI 360 (449)
T ss_pred EEEEEeEeecH
Confidence 67777766533
|
|
| >COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.068 Score=58.10 Aligned_cols=117 Identities=17% Similarity=0.264 Sum_probs=78.6
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC---CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~---eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (464)
...-..+|+.+.+.+|.-..+.||-||.||.|....- .|+-+
T Consensus 216 ~pkG~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~----------------------------------- 260 (589)
T COG0441 216 HPKGATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWD----------------------------------- 260 (589)
T ss_pred CCCcccHHHHHHHHHHHHHHhcCceEecCCeeeecccchhccchh-----------------------------------
Confidence 3445689999999999999999999999999987532 12211
Q ss_pred ccCcccccccch--hHHHH---------HHhhc-------cCceEEEccccccCCCCCccc----cccchhccceeccCC
Q 012426 221 FFEKPAFLTVSG--QLNAE---------TYATA-------LSNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFAD 278 (464)
Q Consensus 221 ~f~~~~yL~~Sp--ql~lq---------ll~~g-------~~rVfeI~~~FR~E~~~t~rH----l~EFtmlE~e~a~~~ 278 (464)
.|....|+..|. ++.++ +...+ --|++++|.|||.|.+ +.-| +-+|||=|.-. |+.
T Consensus 261 ~y~e~mf~~~~~~~~~~lKpmNCpgh~~ifk~~~~SYR~LP~r~~E~g~v~R~E~S-Gal~GL~RvR~ftqdDaHi-fc~ 338 (589)
T COG0441 261 NYKEDMFLTESDDREYALKPMNCPGHILIFKSGLRSYRELPLRLAEFGYVYRYEKS-GALHGLMRVRGFTQDDAHI-FCT 338 (589)
T ss_pred hccccceeeccCChhheeeeccCHhHHHHHhcCCcceeccchhhhhcceeecccCc-chhhccccccceeecccce-ecc
Confidence 223333333332 22222 22111 1489999999999987 3444 46899988866 667
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012426 279 LKDDMACATAYLQYVVRYI 297 (464)
Q Consensus 279 ~~dlm~~~e~li~~i~~~~ 297 (464)
.+.+.+.+.+.+..+..-.
T Consensus 339 ~dQi~~E~~~~~~~i~~v~ 357 (589)
T COG0441 339 PDQIKDEFKGILELILEVY 357 (589)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7888887777776664433
|
|
| >COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.36 E-value=2 Score=41.49 Aligned_cols=208 Identities=18% Similarity=0.173 Sum_probs=106.5
Q ss_pred cccchhHHHHH-Hh-hcc---CceEEEcccccc-CCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcC
Q 012426 228 LTVSGQLNAET-YA-TAL---SNVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC 301 (464)
Q Consensus 228 L~~Spql~lql-l~-~g~---~rVfeI~~~FR~-E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~ 301 (464)
.-.|---|+|. ++ -|| +..|.=.++-|. |++-+..|.-=--|-|||...-+-+..++.+.+.+..+...+...
T Consensus 69 vVhSLAKWKR~tL~r~~f~~~eGlythM~AlRpDeD~ld~~HSvYVDQWDWEkvi~~g~rNl~yLK~tV~kIY~~ir~t- 147 (330)
T COG2502 69 VVHSLAKWKRHTLARYGFSAGEGLYTHMKALRPDEDRLDPIHSVYVDQWDWEKVIPDGDRNLAYLKSTVEKIYAAIRET- 147 (330)
T ss_pred hhHHHHHHHHHHHHhcCCcCCCceeeechhcCCCcccccchheEEecccchhhhcCCccccHHHHHHHHHHHHHHHHHH-
Confidence 34455567763 43 344 679999999997 554458888777788888877655555555555555555544321
Q ss_pred cccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeee--
Q 012426 302 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSD-- 379 (464)
Q Consensus 302 ~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~-- 379 (464)
++.....+ .++..+. ..|+|-.+.++.... | . .=.+.-|..++..+ ..+|++.
T Consensus 148 --e~av~~~~-------~~~~~LP---~~ItFihseeL~~ry------P-~---L~~k~RE~ai~Ke~---gAvFligIG 202 (330)
T COG2502 148 --ELAVSAEF-------GLAPFLP---DQITFIHSQELVARY------P-D---LDPKGRERAIAKEL---GAVFLIGIG 202 (330)
T ss_pred --HHHHHHhc-------CCcccCc---cceEEeehHHHHHhC------C-C---CCcchhhHHHHHhh---CcEEEEecc
Confidence 11000000 0111111 234443333333221 1 0 01223455555443 3666654
Q ss_pred ------CCCCCc-ccccc---cCCCCCceeeEEEee------CCccccccCccccccHHHHHHHHHHcCC-CccchHHHH
Q 012426 380 ------YPKEIK-AFYMR---QNDDGRTVAAMDMLV------PRIGELIGGSQREERLEYLEGRLDELKL-NRDSYWWYL 442 (464)
Q Consensus 380 ------yP~~~~-pfy~~---~~~d~~~~~~fdl~~------~GigEi~~G~~r~~d~~~l~~r~~~~g~-~~~~~~~yl 442 (464)
+|...+ |=|.- +.+++-...+=|+++ .++ |+.+-+.|. |.+.|++++.-.|. |...++|.=
T Consensus 203 g~LsdG~~hd~RaPdYDdWtt~se~~~~gLNGDilvwn~~l~~af-ElSSMGIRV-de~~l~~Ql~ltgdeDrl~~~wHq 280 (330)
T COG2502 203 GKLSDGKPHDVRAPDYDDWTTPSELGYKGLNGDILVWNPVLGDAF-ELSSMGIRV-DEDALKRQLALTGDEDRLELEWHQ 280 (330)
T ss_pred cccCCCCcCCCCCCCccccCCcccccccccCCcEEEechhccchh-eeecceeEe-cHHHHHHHHhccCchhhhcCHHHH
Confidence 344432 22210 011110112233333 466 887777775 45567777664443 444567766
Q ss_pred HHhhh------hh--h---HhhhhcCCCCCCC
Q 012426 443 DLRHY------GS--G---LVFILIKVTNFLN 463 (464)
Q Consensus 443 ~~~~~------G~--g---L~mll~~~~~I~~ 463 (464)
+++.- |. | |+|+|++...|-+
T Consensus 281 ~llng~lP~TIGGGIGQSRl~M~lL~k~HIGe 312 (330)
T COG2502 281 MLLNGELPQTIGGGIGQSRLCMLLLQKKHIGE 312 (330)
T ss_pred HHHcCCCCccccCcccHHHHHHHHhcccccce
Confidence 65532 22 3 9999999998865
|
|
| >cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1) | Back alignment and domain information |
|---|
Probab=94.01 E-value=1.1 Score=34.95 Aligned_cols=62 Identities=16% Similarity=0.325 Sum_probs=45.7
Q ss_pred CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecC
Q 012426 45 SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (464)
Q Consensus 45 g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~ 115 (464)
+.++++.|.|++|. +.+++-.+.. ..... +..|..|.|.|++.... +..++.+.++..+...
T Consensus 18 ~~~~~~~l~D~tg~--i~~~~f~~~~--~~~~~--l~~g~~v~v~G~v~~~~---~~~~l~~~~i~~l~~~ 79 (83)
T cd04492 18 KPYLALTLQDKTGE--IEAKLWDASE--EDEEK--FKPGDIVHVKGRVEEYR---GRLQLKIQRIRLVTEE 79 (83)
T ss_pred CcEEEEEEEcCCCe--EEEEEcCCCh--hhHhh--CCCCCEEEEEEEEEEeC---CceeEEEEEEEECCcc
Confidence 35899999999985 9998875432 12334 99999999999997632 2478888888766543
|
Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases. |
| >PRK10053 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.43 Score=41.72 Aligned_cols=80 Identities=11% Similarity=0.153 Sum_probs=56.0
Q ss_pred eecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEE
Q 012426 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (464)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~ 91 (464)
+++++..+- ..+..|++.|.|.+.=.. =- ...+|++|. |+|-++.+. +....++++|-|.+.|+
T Consensus 50 ~tV~~a~~~------~Dd~~V~L~G~Iv~~lg~--d~-Y~F~D~tG~--I~VeID~~~-----w~G~~v~p~~kV~I~Ge 113 (130)
T PRK10053 50 MTVEQAKTM------HDGATVSLRGNLIDHKGD--DR-YVFRDKSGE--INVIIPAAV-----FDGREVQPDQMININGS 113 (130)
T ss_pred EEHHHhhcC------cCCCeEEEEEEEEEEeCC--ce-EEEECCCCc--EEEEeCHHH-----cCCCcCCCCCEEEEEEE
Confidence 356665553 568899999999544322 22 448999984 999888542 22123999999999999
Q ss_pred EEeCCCCCceEEEEEeeEE
Q 012426 92 VVPSQGSKQKVELKVNKIV 110 (464)
Q Consensus 92 v~~~~~~~~~~el~~~~i~ 110 (464)
|-+.-. ..||.|..|+
T Consensus 114 vDk~~~---~~~IdV~~i~ 129 (130)
T PRK10053 114 LDKKSA---PPVVRVTHLQ 129 (130)
T ss_pred ECCCCC---CeEEEEEEEe
Confidence 987532 3688887775
|
|
| >PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.2 Score=54.61 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC--CCC---C--CCceeeecCCCcccccCCCCCCCCCCCCCCcccccc
Q 012426 148 ARVRNALAYATHKFFQENGFIWISSPIITASDC--EGA---G--EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (464)
Q Consensus 148 ~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~--eg~---~--~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (464)
.....++.+.+|++|...||.|+-|..+++... +.. . +. +.-.|| .+
T Consensus 358 ~~~~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~~~~--i~l~NP----------------------ls-- 411 (552)
T PRK09616 358 LHPIEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPEEDY--VEVLNP----------------------IS-- 411 (552)
T ss_pred CChHHHHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCCCCCe--EEEcCC----------------------Cc--
Confidence 344566788899999999999999999988621 111 0 11 211232 01
Q ss_pred ccCcccccccchhHHH-HHHh---hcc--CceEEEccccccCCCCCccccccchhccceeccC--CHHHHHHHHHHHHHH
Q 012426 221 FFEKPAFLTVSGQLNA-ETYA---TAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQY 292 (464)
Q Consensus 221 ~f~~~~yL~~Spql~l-qll~---~g~--~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~ 292 (464)
..-.+|++|-=--| +.+. .+. -|+||||+||+++.. +..|..|++++-+-++.. |+.++-..+|.++..
T Consensus 412 --~e~svLRtsLlpgLL~~~~~N~~~~~~~~lFEiG~Vf~~~~~-~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~~ 488 (552)
T PRK09616 412 --EDYTVVRTSLLPSLLEFLSNNKHREYPQKIFEIGDVVLIDES-TETGTRTERKLAAAIAHSEASFTEIKSVVQALLRE 488 (552)
T ss_pred --cchheEeccchHHHHHHHHhccCCCCCeeEEEeeEEEecCCc-cccCcchhhEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 11124555532222 3332 222 379999999998764 245778999999888774 789998888888854
|
|
| >PRK05672 dnaE2 error-prone DNA polymerase; Validated | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.35 Score=56.42 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=60.9
Q ss_pred CCCEEEEEEEEeeeecC---CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEE
Q 012426 28 VGLMIVVAGWVRTLRAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVEL 104 (464)
Q Consensus 28 ~~~~V~v~GwV~~iR~~---g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el 104 (464)
.++.|+|+|.|..++.. ++++|+.|.|.+|. +.+++-++ .|++.+. +|..|.++.|+|++.... +.+.+
T Consensus 952 ~~~~v~v~g~i~~~~~~~TkkGmaf~~leD~~g~--~e~~ifp~--~~~~~~~-~l~~~~~~~v~g~v~~~~---~~~~~ 1023 (1046)
T PRK05672 952 DGRRVRVAGVVTHRQRPGTASGVTFLTLEDETGM--VNVVVWPG--LWERQRR-EALGARLLLVRGRVQNAE---GVRHL 1023 (1046)
T ss_pred CCCEEEEEEEEEEEEEecCCCceEEEEEecCCCC--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecC---CeEEE
Confidence 56789999999988663 34999999999985 99998764 3555442 499999999999998642 34788
Q ss_pred EEeeEEEEec
Q 012426 105 KVNKIVLVGK 114 (464)
Q Consensus 105 ~~~~i~vls~ 114 (464)
.++++.-+..
T Consensus 1024 ~~~~i~~~~~ 1033 (1046)
T PRK05672 1024 VADRLEDLSP 1033 (1046)
T ss_pred EEeeeechHH
Confidence 8888765544
|
|
| >PRK07374 dnaE DNA polymerase III subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.45 Score=56.02 Aligned_cols=77 Identities=9% Similarity=0.215 Sum_probs=58.9
Q ss_pred CCCEEEEEEEEeeeecC----C-CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceE
Q 012426 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (464)
Q Consensus 28 ~~~~V~v~GwV~~iR~~----g-~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (464)
.++.|+|.|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|++.+. +|..|.+|.|+|++.... +.+
T Consensus 999 ~~~~v~v~g~i~~~k~~~Tk~G~~maf~~leD~tg~--~e~vvFp~--~y~~~~~-~l~~~~~~~v~g~v~~~~---~~~ 1070 (1170)
T PRK07374 999 DKAKVSAIAMIPEMKQVTTRKGDRMAILQLEDLTGS--CEAVVFPK--SYERLSD-HLMTDTRLLVWAKVDRRD---DRV 1070 (1170)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCC--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecC---CeE
Confidence 57889999999998764 2 4999999999985 99988754 3555443 499999999999997642 336
Q ss_pred EEEEeeEEEE
Q 012426 103 ELKVNKIVLV 112 (464)
Q Consensus 103 el~~~~i~vl 112 (464)
.+.++++.-+
T Consensus 1071 ~~~~~~i~~l 1080 (1170)
T PRK07374 1071 QLIIDDCREI 1080 (1170)
T ss_pred EEEEeeeecH
Confidence 7777766544
|
|
| >PRK06826 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.53 Score=55.41 Aligned_cols=79 Identities=15% Similarity=0.321 Sum_probs=59.8
Q ss_pred CCCEEEEEEEEeeeecC----C-CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceE
Q 012426 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (464)
Q Consensus 28 ~~~~V~v~GwV~~iR~~----g-~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (464)
.++.|+|+|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|+..+. +|..|.+|.|+|++..... +.+
T Consensus 990 ~~~~v~v~g~i~~~~~~~tk~G~~maf~~leD~~g~--~e~~vfp~--~~~~~~~-~l~~~~~~~v~g~v~~~~~--~~~ 1062 (1151)
T PRK06826 990 DGDKVIIGGIITEVKRKTTRNNEMMAFLTLEDLYGT--VEVIVFPK--VYEKYRS-LLNEDNIVLIKGRVSLRED--EEP 1062 (1151)
T ss_pred CCcEEEEEEEEEEeEeeccCCCCeEEEEEEEECCCc--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecCC--Cce
Confidence 47789999999998763 3 4999999999985 99998764 3555432 4999999999999975432 236
Q ss_pred EEEEeeEEEEe
Q 012426 103 ELKVNKIVLVG 113 (464)
Q Consensus 103 el~~~~i~vls 113 (464)
.+.+.++.-+.
T Consensus 1063 ~~~~~~~~~l~ 1073 (1151)
T PRK06826 1063 KLICEEIEPLV 1073 (1151)
T ss_pred EEEEeeeecHh
Confidence 78887775544
|
|
| >COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.92 Score=41.92 Aligned_cols=77 Identities=25% Similarity=0.365 Sum_probs=56.5
Q ss_pred CCCCCEEEEEEEEeeeec--CCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcC--CCCCCcEEEEEEEEEeCCCCCce
Q 012426 26 DRVGLMIVVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSG--LITTGASIWIQGNVVPSQGSKQK 101 (464)
Q Consensus 26 ~~~~~~V~v~GwV~~iR~--~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~--~l~~g~~V~V~G~v~~~~~~~~~ 101 (464)
-.+.+.|+|.|-|.+.+. .+++.++.|.|++| +|-+++..+....-.++.+ .+..|++|.|+|.+..=+..
T Consensus 48 G~l~e~v~vkg~V~~~~n~~~~gi~~l~lndgtG--ti~vva~~~tee~l~~n~~~p~~~eGe~veVtGrv~~yrG~--- 122 (204)
T COG4085 48 GRLNEEVTVKGEVTADQNAIGGGIESLVLNDGTG--TITVVASRSTEETLELNEGMPVTVEGEIVEVTGRVEEYRGS--- 122 (204)
T ss_pred ceeeccceeeeEEEeeecccccceEEEEEECCCC--cEEEEEecChhHhHhhcCCCCccccCcEEEEEEEEEEeCCC---
Confidence 356788999999999984 47899999999998 5998888765322111111 26699999999999876643
Q ss_pred EEEEEe
Q 012426 102 VELKVN 107 (464)
Q Consensus 102 ~el~~~ 107 (464)
.|+.+.
T Consensus 123 ~eVkvn 128 (204)
T COG4085 123 SEVKVN 128 (204)
T ss_pred ceeecc
Confidence 466654
|
|
| >PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.61 Score=39.40 Aligned_cols=58 Identities=14% Similarity=0.235 Sum_probs=39.0
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCC
Q 012426 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (464)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~ 96 (464)
..|+.|+|-|+|.+....|+.+-+.-.|+. .++|.++... . +..+.+|.|.|+|....
T Consensus 16 ~~gk~VrivGkv~~~~~~g~~~~l~~~d~~---~V~v~l~~~~-------~--~~~~~~vEviG~V~~~~ 73 (109)
T PF08661_consen 16 FVGKTVRIVGKVESVDPDGGSATLSTSDGG---QVTVSLNPPS-------D--EELSKYVEVIGKVNDDG 73 (109)
T ss_dssp GTTSEEEEEEEEEEE-TTSSEEEEE-TTS----EEEEEESS---------S--S---SEEEEEEEE-TTS
T ss_pred hCCCeEEEEEEEeeEcCCCCEEEEEcCCCC---EEEEEeCCCC-------C--CCCCCEEEEEEEEcCCC
Confidence 689999999999999977766555545653 5888877542 2 66799999999997654
|
; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D. |
| >PRK05673 dnaE DNA polymerase III subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.58 Score=55.12 Aligned_cols=79 Identities=16% Similarity=0.335 Sum_probs=60.2
Q ss_pred CCCEEEEEEEEeeeecC----C-CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceE
Q 012426 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (464)
Q Consensus 28 ~~~~V~v~GwV~~iR~~----g-~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (464)
.++.|++.|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|++.+. .|..|++|.|+|++.... +.+
T Consensus 976 ~g~~V~v~G~I~~vk~~~TKkG~~mafltLeD~TG~--iEvviFp~--~ye~~~~-~L~~g~iV~V~GkVe~~~---~~~ 1047 (1135)
T PRK05673 976 GGSVVTVAGLVVSVRRRVTKRGNKMAIVTLEDLSGR--IEVMLFSE--ALEKYRD-LLEEDRIVVVKGQVSFDD---GGL 1047 (1135)
T ss_pred cCceEEEEEEEEEEEecccCCCCeEEEEEEEeCCCc--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecC---CeE
Confidence 47889999999998774 3 4999999999985 99998764 3555432 399999999999997632 347
Q ss_pred EEEEeeEEEEec
Q 012426 103 ELKVNKIVLVGK 114 (464)
Q Consensus 103 el~~~~i~vls~ 114 (464)
.+.++++.-+.+
T Consensus 1048 qlii~~I~~L~~ 1059 (1135)
T PRK05673 1048 RLTAREVMDLEE 1059 (1135)
T ss_pred EEEEeecccHHH
Confidence 778877755543
|
|
| >cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14) | Back alignment and domain information |
|---|
Probab=91.81 E-value=1.8 Score=36.14 Aligned_cols=69 Identities=14% Similarity=0.284 Sum_probs=50.0
Q ss_pred CCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEE
Q 012426 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELK 105 (464)
Q Consensus 26 ~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~ 105 (464)
...|+.|++-|+|.+.+.. . +.+.+..| ..++|.++... . +..+-+|.|.|+|... .+|.
T Consensus 12 ~f~gk~V~ivGkV~~~~~~---~-~~~~~~Dg-~~v~v~l~~~~-------~--~~~~~~vEViG~V~~~------~~I~ 71 (101)
T cd04479 12 QFVGKTVRIVGKVEKVDGD---S-LTLISSDG-VNVTVELNRPL-------D--LPISGYVEVIGKVSPD------LTIR 71 (101)
T ss_pred hhCCCEEEEEEEEEEecCC---e-EEEEcCCC-CEEEEEeCCCC-------C--cccCCEEEEEEEECCC------CeEE
Confidence 3789999999999999865 2 44555544 36999988642 3 7888999999999642 4666
Q ss_pred EeeEEEEec
Q 012426 106 VNKIVLVGK 114 (464)
Q Consensus 106 ~~~i~vls~ 114 (464)
+....-++.
T Consensus 72 ~~~~~~~g~ 80 (101)
T cd04479 72 VLSYIDFGD 80 (101)
T ss_pred EEEEEECCC
Confidence 766555554
|
RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer. |
| >PRK15491 replication factor A; Provisional | Back alignment and domain information |
|---|
Probab=91.76 E-value=1.2 Score=46.10 Aligned_cols=92 Identities=22% Similarity=0.286 Sum_probs=65.4
Q ss_pred eecccccCCCCCCCCCCCCEEEEEEEEeee-------ecC---CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCC
Q 012426 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTL-------RAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (464)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~i-------R~~---g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~ 81 (464)
.+|++|... .+.|+|.|||.++ |+. |++.=+.|-|.|| .|++++-.+... .+..+.|.
T Consensus 58 ~kI~dL~~~--------~~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~DeTG--~ir~tlW~~~a~--~~~~~~le 125 (374)
T PRK15491 58 TKIADINES--------SSNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVADETG--SIRLTLWDDLAD--LIKTGDIE 125 (374)
T ss_pred ccHHHCCCC--------CCceEEEEEEeeccCCeeeecCCCCceEEEEEEEEcCCC--eEEEEEECchhh--hhccCCcC
Confidence 456666542 3679999999877 222 4677789999998 499999875421 12213499
Q ss_pred CCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCC
Q 012426 82 TGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS 118 (464)
Q Consensus 82 ~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~ 118 (464)
.|++|.|.|.+...- +++||.+.+-..+.++...
T Consensus 126 ~G~v~~I~~~~~~~y---~g~Ei~i~~~~~i~~~~~~ 159 (374)
T PRK15491 126 VGKSLNISGYAKEGY---SGIEVNIGRYGGISESDEN 159 (374)
T ss_pred CCCEEEEeeeeccCc---ccEEEEeCCCceeeecccc
Confidence 999999999754433 2389999988888888644
|
|
| >PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria | Back alignment and domain information |
|---|
Probab=91.75 E-value=2.9 Score=36.62 Aligned_cols=85 Identities=21% Similarity=0.400 Sum_probs=52.0
Q ss_pred eecccccCCCCCCCCCCCCEEEEEEEEe--eeec---CCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEE
Q 012426 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVR--TLRA---QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASI 86 (464)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~--~iR~---~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V 86 (464)
.+..++.... ...++.|+|.|+|. ++.. ...+.|. |.|+. ..+.|+.....++ +...|.-|
T Consensus 37 ~t~se~~~~~----~~~~~~vrv~G~V~~gSv~~~~~~~~~~F~-i~D~~--~~i~V~Y~G~~Pd-------~F~eg~~V 102 (131)
T PF03100_consen 37 LTPSELAAEP----QKVGRKVRVGGLVVEGSVEYDPDGNTLTFT-ITDGG--KEIPVVYTGPLPD-------LFREGQGV 102 (131)
T ss_dssp E-TTTTTTTS----T-TTSEEEEEEEEECTTEEE-TTSSEEEEE-EE-SS---EEEEEEES--CT-------T--TTSEE
T ss_pred cCHHHHhhcc----ccCCceEEEeeEEccCCEEEcCCCCEEEEE-EEECC--cEEEEEECCCCCc-------cccCCCeE
Confidence 4456665541 24799999999998 6644 3567776 78885 4699998865432 37889999
Q ss_pred EEEEEEEeCCCCCceEEEEEeeEEEEecCCCC
Q 012426 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS 118 (464)
Q Consensus 87 ~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~ 118 (464)
.|+|+... .+ ..+++ +||.||+..
T Consensus 103 Vv~G~~~~--~g----~F~A~--~lL~Kcpsk 126 (131)
T PF03100_consen 103 VVEGRLGE--DG----VFEAT--ELLAKCPSK 126 (131)
T ss_dssp EEEEEECC--TS----EEEEE--EEEETS---
T ss_pred EEEEEECC--CC----EEEEE--EEEeCCCCC
Confidence 99999822 11 34454 788888644
|
Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A. |
| >PRK06920 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.86 Score=53.44 Aligned_cols=77 Identities=16% Similarity=0.264 Sum_probs=58.4
Q ss_pred CCCEEEEEEEEeeeecC-----CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceE
Q 012426 28 VGLMIVVAGWVRTLRAQ-----SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (464)
Q Consensus 28 ~~~~V~v~GwV~~iR~~-----g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (464)
.++.|+|+|.|.++|.. +.++|+.|.|.+|. +.+++-++ .|+..+. .|..|.+|.|+|++.... +..
T Consensus 942 ~~~~v~v~g~i~~~~~~~tk~g~~maf~~leD~tg~--~e~~vFp~--~y~~~~~-~l~~~~~~~v~G~v~~~~---~~~ 1013 (1107)
T PRK06920 942 KKKVQRAIVYITSVKVIRTKKGQKMAFITFCDQNDE--MEAVVFPE--TYIHFSD-KLQEGAIVLVDGTIELRN---HKL 1013 (1107)
T ss_pred CCCEEEEEEEEEEeEeecCCCCCeEEEEEEeeCCCc--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecC---CcE
Confidence 46789999999998653 25999999999985 99988754 3555432 499999999999997642 336
Q ss_pred EEEEeeEEEE
Q 012426 103 ELKVNKIVLV 112 (464)
Q Consensus 103 el~~~~i~vl 112 (464)
.+.++++.-+
T Consensus 1014 ~~~~~~i~~l 1023 (1107)
T PRK06920 1014 QWIVNGLYPL 1023 (1107)
T ss_pred EEEEeecccH
Confidence 7777766544
|
|
| >PRK14699 replication factor A; Provisional | Back alignment and domain information |
|---|
Probab=91.45 E-value=1.4 Score=47.15 Aligned_cols=87 Identities=16% Similarity=0.208 Sum_probs=61.7
Q ss_pred CCEEEEEEEEeeee-------cC---CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCC
Q 012426 29 GLMIVVAGWVRTLR-------AQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGS 98 (464)
Q Consensus 29 ~~~V~v~GwV~~iR-------~~---g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~ 98 (464)
++.|++.|+|.++- .. |+++=+.|.|.||. |.+++..+.. +.+..+.|..||+|.|.|.++.-.
T Consensus 67 ~~~v~i~~rVl~i~~~r~f~r~dG~~g~v~~~~iaDeTG~--ir~tlW~~~a--~~~~~g~l~~GDvv~I~~~~r~~~-- 140 (484)
T PRK14699 67 SGPVNFIARVVSVFDTKEFTRNDGTIGRVGNLIVGDETGK--IKLTLWDNMA--DLIKAGKIKAGQTLQISGYAKQGY-- 140 (484)
T ss_pred CceEEEEEEEEEecCceEEecCCCCceEEEEEEEecCCCe--EEEEEecCcc--chhhhcCCCCCCEEEEcceeccCC--
Confidence 47899999998883 33 46777789999984 9999987542 113323399999999999753323
Q ss_pred CceEEEEEeeEEEEecCCCCCCCC
Q 012426 99 KQKVELKVNKIVLVGKSDPSYPIQ 122 (464)
Q Consensus 99 ~~~~el~~~~i~vls~~~~~~P~~ 122 (464)
++.||.+.+..++.++....+.+
T Consensus 141 -~g~el~~~~~~~i~~~~~~i~v~ 163 (484)
T PRK14699 141 -SGVEVNIGNNGVLTESEEEIDVA 163 (484)
T ss_pred -CCceEEeCCCceeeccCcccccC
Confidence 33799988877887765445543
|
|
| >cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain | Back alignment and domain information |
|---|
Probab=90.85 E-value=0.8 Score=42.84 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhhCCcEEEeCceEeec
Q 012426 153 ALAYATHKFFQENGFIWISSPIITAS 178 (464)
Q Consensus 153 ~i~~~~r~ff~~~gF~EV~TP~L~~~ 178 (464)
.+.+.+|++|...||.||-|..+++.
T Consensus 4 ~~~~~ir~~L~~~G~~E~~tys~~~~ 29 (198)
T cd00769 4 KLERKLRRLLAGLGFQEVITYSLTSP 29 (198)
T ss_pred HHHHHHHHHHHHCCCceeecccCCCH
Confidence 45677899999999999999999876
|
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain. |
| >PRK07279 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=89.30 E-value=1.6 Score=50.69 Aligned_cols=74 Identities=14% Similarity=0.320 Sum_probs=55.2
Q ss_pred CCEEEEEEEEeeeecC------CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceE
Q 012426 29 GLMIVVAGWVRTLRAQ------SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (464)
Q Consensus 29 ~~~V~v~GwV~~iR~~------g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (464)
++.+.+.|+|.++|.. +.++|+.|.|.+|. +.+++-++ .|++.+. .|..|.+|.|+|++.... +.+
T Consensus 884 ~~~~~~~~~i~~~~~~~tk~~g~~maf~~leD~~g~--ie~~vFp~--~y~~~~~-~l~~~~~~~v~G~v~~~~---~~~ 955 (1034)
T PRK07279 884 NSEATILVQIQSIRVIRTKTKGQQMAFLSVTDTKKK--LDVTLFPE--TYRQYKD-ELKEGKFYYLKGKIQERD---GRL 955 (1034)
T ss_pred CCcceEEEEEEEEEEEEEcCCCCeEEEEEEeeCCCc--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecC---Cee
Confidence 4668899999876632 24999999999985 99998764 3555432 399999999999997642 346
Q ss_pred EEEEeeEE
Q 012426 103 ELKVNKIV 110 (464)
Q Consensus 103 el~~~~i~ 110 (464)
.+.++++.
T Consensus 956 ~l~~~~i~ 963 (1034)
T PRK07279 956 QMVLQQIQ 963 (1034)
T ss_pred EEEEeeee
Confidence 77777664
|
|
| >PRK06461 single-stranded DNA-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=88.95 E-value=4.2 Score=35.44 Aligned_cols=84 Identities=21% Similarity=0.171 Sum_probs=56.9
Q ss_pred ceecccccCCCCCCCCCCCCEEEEEEEEeeeec-------C--CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCC
Q 012426 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA-------Q--SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (464)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~-------~--g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~ 81 (464)
..+|+||... .+.|.+-|.|.++-. . +.+.-+.|.|.||. |.+.+..+. +.. +.
T Consensus 4 ~~kI~dL~~g--------~~~v~~~~~V~~i~~~~~~~~k~~~~~v~~~~l~D~TG~--I~~tlW~~~-----a~~--l~ 66 (129)
T PRK06461 4 ITKIKDLKPG--------MERVNVTVRVLEVGEPKVIQTKGGPRTISEAVVGDETGR--VKLTLWGEQ-----AGS--LK 66 (129)
T ss_pred ceEHHHcCCC--------CCceEEEEEEEEcCCceEEEeCCCceEEEEEEEECCCCE--EEEEEeCCc-----ccc--CC
Confidence 3567777642 257888899985421 2 23667889999984 898887642 234 89
Q ss_pred CCcEEEEE-EEEEeCCCCCceEEEEEee---EEEEec
Q 012426 82 TGASIWIQ-GNVVPSQGSKQKVELKVNK---IVLVGK 114 (464)
Q Consensus 82 ~g~~V~V~-G~v~~~~~~~~~~el~~~~---i~vls~ 114 (464)
.||+|.|. |.+..- . +.++|.+.+ |..+.+
T Consensus 67 ~GdvV~I~na~v~~f-~--G~lqL~i~~~~~i~~~~~ 100 (129)
T PRK06461 67 EGEVVEIENAWTTLY-R--GKVQLNVGKYGSISESDD 100 (129)
T ss_pred CCCEEEEECcEEeee-C--CEEEEEECCCEEEEECCc
Confidence 99999999 555443 2 348899884 555554
|
|
| >cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC) | Back alignment and domain information |
|---|
Probab=88.37 E-value=11 Score=29.97 Aligned_cols=73 Identities=21% Similarity=0.241 Sum_probs=46.0
Q ss_pred EEEEEEEeee--ec--CCC-eEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCC-CCcEEEEEEEEEeCCCCCceEEEE
Q 012426 32 IVVAGWVRTL--RA--QSS-VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT-TGASIWIQGNVVPSQGSKQKVELK 105 (464)
Q Consensus 32 V~v~GwV~~i--R~--~g~-~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~-~g~~V~V~G~v~~~~~~~~~~el~ 105 (464)
|+|.|-|-.+ |. .|+ +.-+.|.|.+.. |-|..=.+ ...+.+.. |. .|++|.|.|.+.-..=. +++.+.
T Consensus 2 v~i~G~Vf~~e~re~k~g~~i~~~~itD~t~S--i~~K~F~~-~~~~~~~~--ik~~G~~v~v~G~v~~D~f~-~e~~~~ 75 (82)
T cd04484 2 VVVEGEVFDLEIRELKSGRKILTFKVTDYTSS--ITVKKFLR-KDEKDKEE--LKSKGDWVRVRGKVQYDTFS-KELVLM 75 (82)
T ss_pred EEEEEEEEEEEEEEecCCCEEEEEEEEcCCCC--EEEEEecc-CChhHHhh--cccCCCEEEEEEEEEEccCC-CceEEE
Confidence 7889998765 33 244 445889998864 55432221 11223456 89 99999999999765422 346666
Q ss_pred EeeEE
Q 012426 106 VNKIV 110 (464)
Q Consensus 106 ~~~i~ 110 (464)
+..+.
T Consensus 76 i~~i~ 80 (82)
T cd04484 76 INDIE 80 (82)
T ss_pred eeeEE
Confidence 66554
|
Replication in B. subtilis and Staphylococcus aureus requires two different polymerases, polC and DnaE. The holoenzyme is thought to include the two different polymerases. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis. |
| >PRK07217 replication factor A; Reviewed | Back alignment and domain information |
|---|
Probab=87.95 E-value=7.8 Score=38.86 Aligned_cols=84 Identities=13% Similarity=0.169 Sum_probs=63.7
Q ss_pred CCCEEEEEEEEeee--ecCCCeEE-EEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEE
Q 012426 28 VGLMIVVAGWVRTL--RAQSSVTF-IEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVEL 104 (464)
Q Consensus 28 ~~~~V~v~GwV~~i--R~~g~~~F-i~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el 104 (464)
.++.|+|.|+|..+ +.++++.. -.|-|.||. |..++..+.. ... |..|++|.+.+..+..-.+ .++|
T Consensus 81 ~~~~VsV~aKVl~l~e~~~~si~qvGllgDETG~--IkfT~W~~s~----~~~--leeGd~~rI~na~v~ey~G--~~~l 150 (311)
T PRK07217 81 PEQWVDVTAKVVQLWEPSSDSIAQVGLLGDETGT--IKFTKWAKSD----LPE--LEEGKSYLLKNVVTDEYQG--RFSV 150 (311)
T ss_pred CCCcEEEEEEEEEecCCCCCceEEEEEEEcCCce--EEEEEccCCC----CCc--ccCCCEEEEEeEEEeeECC--EEEE
Confidence 46789999999887 44567777 679999974 8888776421 223 9999999999998876654 3899
Q ss_pred EEeeEEEEecCCCCCCC
Q 012426 105 KVNKIVLVGKSDPSYPI 121 (464)
Q Consensus 105 ~~~~i~vls~~~~~~P~ 121 (464)
.+.+...+.+.+.+.++
T Consensus 151 nlg~~t~I~~~de~IeV 167 (311)
T PRK07217 151 KLNRTTSIEELDEDIEV 167 (311)
T ss_pred EeCCceEEEeCCCCccc
Confidence 99988888886655554
|
|
| >PRK13480 3'-5' exoribonuclease YhaM; Provisional | Back alignment and domain information |
|---|
Probab=87.33 E-value=4.3 Score=40.98 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=54.7
Q ss_pred CCEEEEEEEEeeeec----CC-CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEE
Q 012426 29 GLMIVVAGWVRTLRA----QS-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVE 103 (464)
Q Consensus 29 ~~~V~v~GwV~~iR~----~g-~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~e 103 (464)
|+.|..-.-|.++.. .| ....+.|+|.||. |.+.+...... .... +..|++|.|.|.+..-+. .+.
T Consensus 11 g~~v~~~~lv~~~~~~~~knG~~yl~l~l~D~tG~--I~ak~W~~~~~--~~~~--~~~g~vv~v~G~v~~y~g---~~Q 81 (314)
T PRK13480 11 GEQVDHFLLIKSATKGVASNGKPFLTLILQDKSGD--IEAKLWDVSPE--DEAT--YVPETIVHVKGDIINYRG---RKQ 81 (314)
T ss_pred CCEeeEEEEEEEceeeecCCCCeEEEEEEEcCCcE--EEEEeCCCChh--hHhh--cCCCCEEEEEEEEEEECC---cce
Confidence 445555555554432 24 3777889999984 99988754321 2345 999999999999987653 367
Q ss_pred EEEeeEEEEecCC
Q 012426 104 LKVNKIVLVGKSD 116 (464)
Q Consensus 104 l~~~~i~vls~~~ 116 (464)
+.+..+..+.+..
T Consensus 82 l~i~~i~~~~~~e 94 (314)
T PRK13480 82 LKVNQIRLATEED 94 (314)
T ss_pred EEEEEeEECCCCC
Confidence 8888898887753
|
|
| >cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB) | Back alignment and domain information |
|---|
Probab=87.00 E-value=6 Score=31.22 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=39.8
Q ss_pred CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEE-EEEEeCCCCCceEEEEEeeEE
Q 012426 45 SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ-GNVVPSQGSKQKVELKVNKIV 110 (464)
Q Consensus 45 g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~-G~v~~~~~~~~~~el~~~~i~ 110 (464)
+++.=+.|.|.+| .|.+++-.... ... +..|++|.+. |++..-+ +.++|.+.+..
T Consensus 22 ~~~~~~~l~D~TG--~i~~~~W~~~~----~~~--~~~G~vv~i~~~~v~~~~---g~~ql~i~~~~ 77 (82)
T cd04491 22 GKVQSGLVGDETG--TIRFTLWDEKA----ADD--LEPGDVVRIENAYVREFN---GRLELSVGKNS 77 (82)
T ss_pred eEEEEEEEECCCC--EEEEEEECchh----ccc--CCCCCEEEEEeEEEEecC---CcEEEEeCCce
Confidence 5677788999997 49998876532 234 9999999999 7776543 34788776543
|
SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating |
| >PF03590 AsnA: Aspartate-ammonia ligase; InterPro: IPR004618 Aspartate--ammonia ligase (asparagine synthetase) 6 | Back alignment and domain information |
|---|
Probab=86.12 E-value=4.2 Score=39.06 Aligned_cols=125 Identities=12% Similarity=0.071 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhhh-----CCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc-cccCcc
Q 012426 152 NALAYATHKFFQE-----NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ-DFFEKP 225 (464)
Q Consensus 152 s~i~~~~r~ff~~-----~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~f~~~ 225 (464)
.+.+..++++|.. .+.+.|..|+++...++=+.++=-+.. || .++. +.-+..
T Consensus 7 q~aI~~iK~~F~~~L~~~LnL~rVsAPLfv~~~sGlNDnLnG~Er-----------pV-----------sF~~k~~~~~~ 64 (244)
T PF03590_consen 7 QKAIKFIKDTFERELSKALNLTRVSAPLFVEKGSGLNDNLNGVER-----------PV-----------SFDIKDIPDET 64 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHC-EEE----SEEETTSS-S--TTST--------------------------EE--TTSTT--
T ss_pred HHHHHHHHHHHHHHHHHHhCceEecCCeEEecCCCCcCCCCCeEe-----------eE-----------EEEccCCCCce
Confidence 4556777777754 699999999999875542221100000 00 0000 111334
Q ss_pred cccccchhHHHHHHhh--cc---CceEEEccccc-cCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHh
Q 012426 226 AFLTVSGQLNAETYAT--AL---SNVYTFGPTFR-AENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYIL 298 (464)
Q Consensus 226 ~yL~~Spql~lqll~~--g~---~rVfeI~~~FR-~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~ 298 (464)
+-.-+|=--|+|+... +| +.+|+=..+.| .|+.-+..|.-=.-|-|||+....-+.-++.+.+.++.+...+.
T Consensus 65 ~EIVhSLAKWKR~aL~~y~f~~geGlyTdMnAiR~~de~ld~~HSiYVDQWDWEkvI~~~~Rnl~~Lk~tV~~Iy~aik 143 (244)
T PF03590_consen 65 AEIVHSLAKWKRMALKRYGFPPGEGLYTDMNAIRPDDEELDNIHSIYVDQWDWEKVISKEDRNLEFLKETVRKIYKAIK 143 (244)
T ss_dssp EEE-S--TTHHHHHHHHTT--TT-EEEEEEEEE-TT-SS--SS--SEEEEEEEEEE--TT--SHHHHHHHHHHHHHHHH
T ss_pred eeeehhHHHHHHHHHHHcCCCCCceEeecCceeecchhccCcceEEEecccCHhhhcCcccccHHHHHHHHHHHHHHHH
Confidence 4456677778886543 55 58999999999 87643589999999999999987555556666666666666554
|
3.1.1 from EC catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. This family represents one of two non-homologous forms of aspartate--ammonia ligase found in Escherichia coli. This type is also found in Haemophilus influenzae, Treponema pallidum and Lactobacillus delbrueckii, but appears to have a very limited distribution. The fact that the protein from the H. influenzae is more than 70% identical to that from the spirochete T. pallidum, but less than 65% identical to that from the closely related E. coli, strongly suggests lateral transfer.; GO: 0004071 aspartate-ammonia ligase activity, 0006529 asparagine biosynthetic process, 0005737 cytoplasm; PDB: 11AS_B 12AS_A. |
| >cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG | Back alignment and domain information |
|---|
Probab=86.00 E-value=10 Score=28.46 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=38.1
Q ss_pred EEEEEeeeec----CCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCC
Q 012426 34 VAGWVRTLRA----QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (464)
Q Consensus 34 v~GwV~~iR~----~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~ 96 (464)
+.|.|.+++. .++..-+.+.|++|. +.+++=... .+. .+. +..|+.+.|.|++....
T Consensus 2 i~~~V~~~~~~~~~~~~~~~~~~~D~~g~--i~~~~F~~~-~~~-~~~--~~~G~~~~v~Gkv~~~~ 62 (75)
T cd04488 2 VEGTVVSVEVVPRRGRRRLKVTLSDGTGT--LTLVFFNFQ-PYL-KKQ--LPPGTRVRVSGKVKRFR 62 (75)
T ss_pred EEEEEEEEEeccCCCccEEEEEEEcCCCE--EEEEEECCC-HHH-Hhc--CCCCCEEEEEEEEeecC
Confidence 5566655432 135677789999874 888775421 111 245 99999999999998754
|
RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha |
| >KOG3108 consensus Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=85.70 E-value=5.6 Score=39.08 Aligned_cols=76 Identities=22% Similarity=0.339 Sum_probs=55.9
Q ss_pred CEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccc-hhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEee
Q 012426 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (464)
Q Consensus 30 ~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~-~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~ 108 (464)
..|++-|||.++-....-++++|-|++|. |=+........ -.+... |..|-.|.|.|.++.-.++ .+|.+.+
T Consensus 69 ~~v~~VGivr~~e~~~t~i~y~I~D~tg~--id~r~W~~~~~~~~e~~~--l~~~~yVkv~G~Lk~f~Gk---~sl~~fk 141 (265)
T KOG3108|consen 69 SAVSIVGIVRNIEKSATNITYEIEDGTGQ--IDVRQWFHDNAESEEMPA--LETGTYVKVYGHLKPFQGK---KSLQVFK 141 (265)
T ss_pred EEEEEEEEEEeceecCcceEEEEecCccc--EEEEEeccccchhhhCcc--cccCcEEEeeecccCCCCc---eeEEEEe
Confidence 46899999999999988889999999985 66655443211 122446 9999999999999765533 5777776
Q ss_pred EEEE
Q 012426 109 IVLV 112 (464)
Q Consensus 109 i~vl 112 (464)
|.-+
T Consensus 142 I~pv 145 (265)
T KOG3108|consen 142 IRPV 145 (265)
T ss_pred eeee
Confidence 6543
|
|
| >COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.47 E-value=1.9 Score=44.65 Aligned_cols=99 Identities=19% Similarity=0.188 Sum_probs=65.5
Q ss_pred hhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC---C-C---CCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc
Q 012426 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---E-G---AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (464)
Q Consensus 147 ~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~---e-g---~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (464)
-.+.+..|.+.+++.|..+||..|+||+|...++ + | -.+.|++++..
T Consensus 16 e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~d~~-------------------------- 69 (390)
T COG3705 16 EARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLEDET-------------------------- 69 (390)
T ss_pred HHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEecCC--------------------------
Confidence 4567788889999999999999999999998654 1 1 13567664321
Q ss_pred cccCcccccccchhHHH---H----HHhhccCceEEEccccccCCCCCccccccchhccceeccC
Q 012426 220 DFFEKPAFLTVSGQLNA---E----TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 277 (464)
Q Consensus 220 ~~f~~~~yL~~Spql~l---q----ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~ 277 (464)
++.+-|+ |++=. + .+...-.|+...|++||+.+.. ..-..||+|+=+|.=+.
T Consensus 70 ---g~~l~LR--pD~T~pVaR~~~~~~~~~P~Rl~Y~G~Vfr~~~~~-~g~~~Ef~QaGiEllG~ 128 (390)
T COG3705 70 ---GGRLGLR--PDFTIPVARIHATLLAGTPLRLSYAGKVFRAREGR-HGRRAEFLQAGIELLGD 128 (390)
T ss_pred ---CCeEEec--ccccHHHHHHHHHhcCCCCceeeecchhhhcchhc-cCcccchhhhhhHHhCC
Confidence 2222232 22222 2 2233467999999999998332 33345999999987554
|
|
| >COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=85.11 E-value=4.4 Score=42.55 Aligned_cols=76 Identities=11% Similarity=0.215 Sum_probs=57.9
Q ss_pred CCEEEEEEEEeeeecCC-CeEEEEEEeCcCCcceEEEEeCCccchhhh-hcCCCCCCcEEEEEEEEEeCCCCCceEEEEE
Q 012426 29 GLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (464)
Q Consensus 29 ~~~V~v~GwV~~iR~~g-~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~-~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~ 106 (464)
=..|+|.|-|.+++.+. +-.|+.|.|... .|+|++-+.... .+ -. +..|+-|.|.|++.-=+.. +.+.|.+
T Consensus 23 ~~~V~v~GEISn~t~~~sgH~YFtLKD~~A--~i~c~mf~~~~~--~l~f~--p~eG~~V~v~G~is~Y~~r-G~YQi~~ 95 (440)
T COG1570 23 LGQVWVRGEISNFTRPASGHLYFTLKDERA--QIRCVMFKGNNR--RLKFR--PEEGMQVLVRGKISLYEPR-GDYQIVA 95 (440)
T ss_pred CCeEEEEEEecCCccCCCccEEEEEccCCc--eEEEEEEcCccc--ccCCC--ccCCCEEEEEEEEEEEcCC-CceEEEE
Confidence 36799999999998763 389999999985 599998765421 11 13 8899999999999865433 3488888
Q ss_pred eeEEE
Q 012426 107 NKIVL 111 (464)
Q Consensus 107 ~~i~v 111 (464)
++++-
T Consensus 96 ~~~~p 100 (440)
T COG1570 96 ESMEP 100 (440)
T ss_pred ecCCc
Confidence 88764
|
|
| >KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=84.98 E-value=2.1 Score=44.38 Aligned_cols=117 Identities=16% Similarity=0.197 Sum_probs=69.5
Q ss_pred hhhhHHHHHHHHHHHHhhhCCcEEEeCceEee------cCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc
Q 012426 146 AVARVRNALAYATHKFFQENGFIWISSPIITA------SDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (464)
Q Consensus 146 ~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~------~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (464)
+-+.+|..|++.+.+.|..+|...|+||++.- -.+|...-.+.+.+- .|
T Consensus 72 ~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEdskLiYdlkDQ-------------------GG------ 126 (518)
T KOG1936|consen 72 EQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDSKLIYDLKDQ-------------------GG------ 126 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhcccccceeEehhhc-------------------CC------
Confidence 34789999999999999999999999998653 233322111111100 00
Q ss_pred cccCcccccccchhHHHHHHhh-cc--CceEEEccccccCCC-CCccccccchhccceecc-CC----HHHHHHHHHHHH
Q 012426 220 DFFEKPAFLTVSGQLNAETYAT-AL--SNVYTFGPTFRAENS-NTSRHLAEFWMIEPELAF-AD----LKDDMACATAYL 290 (464)
Q Consensus 220 ~~f~~~~yL~~Spql~lqll~~-g~--~rVfeI~~~FR~E~~-~t~rHl~EFtmlE~e~a~-~~----~~dlm~~~e~li 290 (464)
......+-|+++=- |.++. .. =+-|.|+++||.+.. -|.--.-||+|+|+-.|+ .+ --+++..+-+++
T Consensus 127 El~SLRYDLTVPfA---RylAmNki~sikRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L 203 (518)
T KOG1936|consen 127 ELCSLRYDLTVPFA---RYLAMNKITSIKRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIVVEIL 203 (518)
T ss_pred cEEEeecccccHHH---HHHHHcccccceeeeEEEEEeccCchhhchhhhhhhccCccccccCCCCCchHHHHHHHHHHH
Confidence 11112233554422 43332 22 245999999998753 233345699999998887 22 244555555554
|
|
| >PRK02801 primosomal replication protein N; Provisional | Back alignment and domain information |
|---|
Probab=83.89 E-value=14 Score=30.63 Aligned_cols=48 Identities=25% Similarity=0.415 Sum_probs=33.0
Q ss_pred eEEEEeCCccchhhh-hcCCCCCCcEEEEEEEEEe--CCCCCceEEEEEeeEEEE
Q 012426 61 MQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVP--SQGSKQKVELKVNKIVLV 112 (464)
Q Consensus 61 iQvv~~~~~~~~~~~-~~~~l~~g~~V~V~G~v~~--~~~~~~~~el~~~~i~vl 112 (464)
|+|++-.+.. +.+ +. |..|+-|.|+|.+.. ++.+...+.|+++.++.+
T Consensus 50 i~~va~G~~A--e~~~~~--l~kGs~v~V~G~L~~~~~~~g~~~~~v~~~~i~~l 100 (101)
T PRK02801 50 MPVIVSGNQF--QAITQS--ITVGSKITVQGFISCHQGRNGLSKLVLHAEQIELI 100 (101)
T ss_pred EEEEEEcHHH--HHHHhh--cCCCCEEEEEEEEEEeECCCCCEEEEEEEEEEEEC
Confidence 6777665321 222 35 999999999999985 344434467888888765
|
|
| >KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=82.99 E-value=2.2 Score=49.74 Aligned_cols=115 Identities=14% Similarity=0.141 Sum_probs=68.3
Q ss_pred hhhHHHHHHHHHHHHhhhCCcEEEeCceEee-cCCC-CCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCc
Q 012426 147 VARVRNALAYATHKFFQENGFIWISSPIITA-SDCE-GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (464)
Q Consensus 147 ~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~-~~~e-g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 224 (464)
.-.+|+.+...+-+.|..+|++|++||-+.. ++|- +..++-.+-++ . ++--..
T Consensus 931 ~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~~~~~~~~~v~~ld~-------------------s------G~~v~L 985 (1351)
T KOG1035|consen 931 NNELREYVVEEVVKIFRKHGAIELETPPLSLRNACAYFSRKAVELLDH-------------------S------GDVVEL 985 (1351)
T ss_pred HHHHHHHHHHHHHHHHHHhcceeccCCccccccccchhccceeeeecC-------------------C------CCEEEe
Confidence 3467888888999999999999999996654 3331 12222111111 1 111122
Q ss_pred ccccccchhHHHHHHhh---ccCceEEEccccccCCCCCccccccchhccceeccCC----HHHHHHHHHHHHHH
Q 012426 225 PAFLTVSGQLNAETYAT---ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDMACATAYLQY 292 (464)
Q Consensus 225 ~~yL~~Spql~lqll~~---g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~----~~dlm~~~e~li~~ 292 (464)
|+-|++- +-+.++. -.-|-|+|++|||.+.. + |..|++.+++-....+ --+++.++-+++..
T Consensus 986 p~DLr~p---far~vs~N~~~~~Kry~i~rVyr~~~~--~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~ 1054 (1351)
T KOG1035|consen 986 PYDLRLP---FARYVSRNSVLSFKRYCISRVYRPAIH--N-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTE 1054 (1351)
T ss_pred eccccch---HHHHhhhchHHHHHHhhhheeeccccc--C-CCccccceeeeEecCCCCccHHHHHHHHHHHHHH
Confidence 3333321 1122221 24577999999999983 4 9999999998766543 24455555555544
|
|
| >cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70) | Back alignment and domain information |
|---|
Probab=82.52 E-value=8.6 Score=32.04 Aligned_cols=74 Identities=18% Similarity=0.272 Sum_probs=47.8
Q ss_pred CEEEEEEEEee---eec------CCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEE-EEeCCCC-
Q 012426 30 LMIVVAGWVRT---LRA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN-VVPSQGS- 98 (464)
Q Consensus 30 ~~V~v~GwV~~---iR~------~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~-v~~~~~~- 98 (464)
..++|+|||.+ +|. .|++.-++|.|..| ..|++.+-.+.. +... .+|..|+++.+.|- |.+....
T Consensus 10 ~~~~I~~rV~~k~~~~~f~~~~~~g~~~~~~l~De~~-~~I~~t~~~~~~--~~f~-~~l~eG~vy~i~~~~V~~a~~~y 85 (104)
T cd04474 10 NKWTIKARVTNKSDIRTWSNARGEGKLFSFDLLDEDG-GEIRATFFNDAV--DKFY-DLLEVGKVYYISKGSVKVANKKF 85 (104)
T ss_pred CcEEEEEEEeeccccccccCCCCCcEEEEEEEEECCC-CEEEEEEehHHH--HHhh-cccccccEEEEeccEEeeccccC
Confidence 46899999974 332 26788899999954 369999886431 1121 13999999999774 4443221
Q ss_pred ---CceEEEEEe
Q 012426 99 ---KQKVELKVN 107 (464)
Q Consensus 99 ---~~~~el~~~ 107 (464)
...+||...
T Consensus 86 ~~~~~~yeI~f~ 97 (104)
T cd04474 86 NTLKNDYEITFN 97 (104)
T ss_pred CCCCCcEEEEEC
Confidence 234666554
|
RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct |
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=82.43 E-value=11 Score=42.23 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=52.1
Q ss_pred CCCCEEEEEEEEeeeecC---CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEE
Q 012426 27 RVGLMIVVAGWVRTLRAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVE 103 (464)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~---g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~e 103 (464)
..|+.|+|.|.|.+.+.. +++.-+.+.|++|. +++++=.-...|- .+. +.+|+.+.|.|++.... +.++
T Consensus 57 ~~g~~vtv~g~V~~~~~~~~~~~~~~v~l~D~tg~--i~l~~F~~n~~~~-~~~--l~~G~~~~v~Gkv~~~~---~~~q 128 (681)
T PRK10917 57 RPGEKVTVEGEVLSAEVVFGKRRRLTVTVSDGTGN--LTLRFFNFNQPYL-KKQ--LKVGKRVAVYGKVKRGK---YGLE 128 (681)
T ss_pred CCCCEEEEEEEEEEEEEccCCceEEEEEEEECCeE--EEEEEEccCcHHH-Hhh--CCCCCEEEEEEEEEecC---CeEE
Confidence 458899999999887533 35677889999974 8887652111121 244 99999999999998732 2255
Q ss_pred EEEeeEEE
Q 012426 104 LKVNKIVL 111 (464)
Q Consensus 104 l~~~~i~v 111 (464)
+.--++.+
T Consensus 129 m~~P~~~~ 136 (681)
T PRK10917 129 MVHPEYEV 136 (681)
T ss_pred EEcCEEEe
Confidence 54444443
|
|
| >PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=82.12 E-value=8.8 Score=40.54 Aligned_cols=79 Identities=19% Similarity=0.261 Sum_probs=59.9
Q ss_pred CCEEEEEEEEeeeecC-CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEe
Q 012426 29 GLMIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (464)
Q Consensus 29 ~~~V~v~GwV~~iR~~-g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~ 107 (464)
-..|+|.|=|.+.+.+ ++-+|+.|.|... .|-||+-+... ..+. -.+..|+-|.|.|.+.--+.. +.+.|.+.
T Consensus 23 ~~~v~v~gEis~~~~~~sGH~Yf~Lkd~~a--~i~~~~~~~~~--~~~~-~~~~~G~~v~v~g~~~~y~~~-g~~ql~v~ 96 (438)
T PRK00286 23 LGQVWVRGEISNFTRHSSGHWYFTLKDEIA--QIRCVMFKGSA--RRLK-FKPEEGMKVLVRGKVSLYEPR-GDYQLIVE 96 (438)
T ss_pred CCcEEEEEEeCCCeeCCCCeEEEEEEcCCc--EEEEEEEcChh--hcCC-CCCCCCCEEEEEEEEEEECCC-CCEEEEEE
Confidence 5789999999999876 6689999999974 59999987531 1121 128999999999999853322 34999999
Q ss_pred eEEEEe
Q 012426 108 KIVLVG 113 (464)
Q Consensus 108 ~i~vls 113 (464)
+|...+
T Consensus 97 ~i~~~g 102 (438)
T PRK00286 97 EIEPAG 102 (438)
T ss_pred EeeeCC
Confidence 998644
|
|
| >PRK07218 replication factor A; Provisional | Back alignment and domain information |
|---|
Probab=81.89 E-value=11 Score=39.60 Aligned_cols=83 Identities=16% Similarity=0.124 Sum_probs=58.2
Q ss_pred ceecccccCCCCCCCCCCCCEEEEEEEEeeee-----c---CCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCC
Q 012426 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR-----A---QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITT 82 (464)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR-----~---~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~ 82 (464)
..+|+||.. .++.|.|.|+|.++- . -|.+.=+.|-|.||. |.+++..+. . |..
T Consensus 58 ~~kI~Di~~--------~~~~V~v~~kVl~i~~rt~r~dg~~g~v~~~~igDeTG~--Ir~tlW~~~-------~--l~~ 118 (423)
T PRK07218 58 SKDIKELST--------DDKNVTVTGRVLTIGERSIRYQGDDHVIYEGILADETGT--ISYTAWKDF-------G--LSP 118 (423)
T ss_pred CccHhhCCC--------CCceeEEEEEEEEecceeEecCCCceEEEEEEEECCCCe--EEEEEECCC-------C--CCC
Confidence 345666654 247899999998873 1 246777788888874 888887632 3 999
Q ss_pred CcEEEEEEEEEeCCCCCceEEEEEeeEEEEec
Q 012426 83 GASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (464)
Q Consensus 83 g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~ 114 (464)
||+|.|.+-..+.-. +.++|.+.+-.-+..
T Consensus 119 Gdvv~I~na~vre~~--g~~el~ig~~t~I~~ 148 (423)
T PRK07218 119 GDTVTIGNAGVREWD--GRPELNIGESTTVSL 148 (423)
T ss_pred CCEEEEeccEeeccC--CceEEeccCcceEEE
Confidence 999999987766554 348888765544443
|
|
| >KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.74 E-value=0.6 Score=48.35 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=29.6
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeec
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWISSPIITAS 178 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~ 178 (464)
.....+-.++++..-+|+.++||+-+.||-|...
T Consensus 182 g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rk 215 (455)
T KOG2509|consen 182 GAGAFLEQALINYALDFLNAKGYTPLTTPDILRK 215 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCccccCchhhhH
Confidence 4466777889999999999999999999999874
|
|
| >PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed | Back alignment and domain information |
|---|
Probab=81.41 E-value=23 Score=32.09 Aligned_cols=75 Identities=21% Similarity=0.354 Sum_probs=54.4
Q ss_pred CCCCEEEEEEEEe--eeecCC---CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCce
Q 012426 27 RVGLMIVVAGWVR--TLRAQS---SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (464)
Q Consensus 27 ~~~~~V~v~GwV~--~iR~~g---~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~ 101 (464)
..++.++|.|.|. |+.+.+ .+.| .|.|+.. .|.|....-.++ +..-|.-|.|+|.+....
T Consensus 55 ~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~--~v~V~Y~GilPD-------lFrEG~gVVveG~~~~~g----- 119 (159)
T PRK13150 55 AVGQRLRVGGMVMPGSVRRDPDSLKVNF-SLYDAEG--SVTVSYEGILPD-------LFREGQGVVVQGTLEKGN----- 119 (159)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCcEEEE-EEEcCCc--EEEEEEeccCCc-------cccCCCeEEEEEEECCCC-----
Confidence 4689999999998 886653 3565 5899874 588887754432 378899999999995421
Q ss_pred EEEEEeeEEEEecCCCCC
Q 012426 102 VELKVNKIVLVGKSDPSY 119 (464)
Q Consensus 102 ~el~~~~i~vls~~~~~~ 119 (464)
.+++ =+||.||+..|
T Consensus 120 -~F~A--~evLAKhdekY 134 (159)
T PRK13150 120 -HVLA--HEVLAKHDENY 134 (159)
T ss_pred -EEEE--eEEEeCCCCCC
Confidence 2344 37899998665
|
|
| >COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.98 E-value=7.3 Score=40.64 Aligned_cols=74 Identities=19% Similarity=0.338 Sum_probs=53.6
Q ss_pred CEEEEEEEEeee--ecCCCeEEEEEEeCcCCcceEEEEeCCccchhh-hhcCCCCCCcEEEEEEEEEeCCCCCceEEEEE
Q 012426 30 LMIVVAGWVRTL--RAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (464)
Q Consensus 30 ~~V~v~GwV~~i--R~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~-~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~ 106 (464)
..++|.|.|... ..-|+..|+.+.|+.| .|-++.-.....|.. ++. |.+||.|.+.|.++... |.+
T Consensus 267 ~~~~v~g~v~~~p~~ieGghv~v~i~d~~G--~I~~~A~eptk~fr~~a~~--L~pGD~i~~~G~~~~~~-------~n~ 335 (421)
T COG1571 267 SKYRVVGRVEAEPRAIEGGHVVVEITDGEG--EIGAVAFEPTKEFRELARK--LIPGDEITVYGSVKPGT-------LNL 335 (421)
T ss_pred cceEEEEEEecccEEeeCCEEEEEecCCCc--eEEEEEecccccchHHHHh--cCCCCEEEEecCccccc-------eeE
Confidence 467889988665 3358999999999987 477776544433433 677 99999999999986532 666
Q ss_pred eeEEEEec
Q 012426 107 NKIVLVGK 114 (464)
Q Consensus 107 ~~i~vls~ 114 (464)
++++++.-
T Consensus 336 ek~~v~~l 343 (421)
T COG1571 336 EKFQVLKL 343 (421)
T ss_pred EEEEEEEe
Confidence 66666543
|
|
| >PRK12366 replication factor A; Reviewed | Back alignment and domain information |
|---|
Probab=80.95 E-value=9.3 Score=42.48 Aligned_cols=81 Identities=17% Similarity=0.267 Sum_probs=56.8
Q ss_pred CCCEEEEEEEEeeee---c------CCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeC---
Q 012426 28 VGLMIVVAGWVRTLR---A------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS--- 95 (464)
Q Consensus 28 ~~~~V~v~GwV~~iR---~------~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~--- 95 (464)
.|..++|.|||.++- . .|++.=+.|.|.+| .|++++-.+.. +.+.. |..|+++.+.+-..+.
T Consensus 290 ~g~~~~I~grV~~~~~~R~f~~~~g~gkv~s~~l~D~tG--~IR~t~w~~~~--d~~~~--l~~G~vy~is~~~vk~y~~ 363 (637)
T PRK12366 290 DGEEVDVKGRIIAISDKREVERDDRTAEVQDIELADGTG--RVRVSFWGEKA--KILEN--LKEGDAVKIENCKVRTYYD 363 (637)
T ss_pred CCCEEEEEEEEEecCCceEEEcCCCcEEEEEEEEEcCCC--eEEEEEeCchh--hhhcc--cCCCCEEEEecCEEeeccc
Confidence 467899999998763 2 27888899999997 49999976532 12234 7899999998866551
Q ss_pred CCCCceEEEEEeeEEEEec
Q 012426 96 QGSKQKVELKVNKIVLVGK 114 (464)
Q Consensus 96 ~~~~~~~el~~~~i~vls~ 114 (464)
..+...+||.+..-..+.+
T Consensus 364 ~~~~~~~El~~~~~s~I~~ 382 (637)
T PRK12366 364 NEGEKRVDLNAGYSSEIIK 382 (637)
T ss_pred cCCCcCEEEEcCCceEEEe
Confidence 1233458888866554433
|
|
| >PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed | Back alignment and domain information |
|---|
Probab=80.88 E-value=23 Score=32.08 Aligned_cols=75 Identities=21% Similarity=0.363 Sum_probs=53.9
Q ss_pred CCCCEEEEEEEEe--eeecC-C--CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCce
Q 012426 27 RVGLMIVVAGWVR--TLRAQ-S--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (464)
Q Consensus 27 ~~~~~V~v~GwV~--~iR~~-g--~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~ 101 (464)
..++.++|.|.|. |+.+. + .+.| .|.|+.. .|.|....-.++ +..-|.-|.|+|.+....
T Consensus 55 ~~g~~iRvgG~V~~GSi~r~~~~l~v~F-~vtD~~~--~v~V~Y~GilPD-------lFrEG~gVVveG~~~~~g----- 119 (160)
T PRK13165 55 EVGQRLRVGGMVMPGSVQRDPNSLKVSF-TLYDAGG--SVTVTYEGILPD-------LFREGQGIVAQGVLEEGN----- 119 (160)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCeEEEE-EEEcCCe--EEEEEEcccCCc-------cccCCCeEEEEEEECCCC-----
Confidence 4689999999998 77665 3 3566 5889864 588887754332 378899999999995421
Q ss_pred EEEEEeeEEEEecCCCCC
Q 012426 102 VELKVNKIVLVGKSDPSY 119 (464)
Q Consensus 102 ~el~~~~i~vls~~~~~~ 119 (464)
.++++ +||.||+..|
T Consensus 120 -~F~A~--~vLAKhdekY 134 (160)
T PRK13165 120 -HIEAK--EVLAKHDENY 134 (160)
T ss_pred -eEEEE--EEEecCCCCC
Confidence 33443 7899998664
|
|
| >TIGR00237 xseA exodeoxyribonuclease VII, large subunit | Back alignment and domain information |
|---|
Probab=80.59 E-value=9.9 Score=40.19 Aligned_cols=76 Identities=13% Similarity=0.303 Sum_probs=57.8
Q ss_pred CEEEEEEEEeeeecC-CCeEEEEEEeCcCCcceEEEEeCCccchhhhh-cCCCCCCcEEEEEEEEEeCCCCCceEEEEEe
Q 012426 30 LMIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVK-SGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (464)
Q Consensus 30 ~~V~v~GwV~~iR~~-g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~-~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~ 107 (464)
..|+|.|=|.+.+.+ .+-+|+.|.|... .|.||+-+... ..++ . +..|+-|.|.|.+.--+.. +.+.|.|+
T Consensus 18 ~~v~V~GEisn~~~~~sGH~YFtLkD~~a--~i~~vmf~~~~--~~l~f~--~~~G~~V~v~g~v~~y~~~-G~~ql~v~ 90 (432)
T TIGR00237 18 LQVWIQGEISNFTQPVSGHWYFTLKDENA--QVRCVMFRGNN--NRLKFR--PQNGQQVLVRGGISVYEPR-GDYQIICF 90 (432)
T ss_pred CcEEEEEEecCCeeCCCceEEEEEEcCCc--EEEEEEEcChh--hCCCCC--CCCCCEEEEEEEEEEECCC-CcEEEEEE
Confidence 479999999999875 5689999999874 59998876532 1111 3 8999999999999754332 34899999
Q ss_pred eEEEE
Q 012426 108 KIVLV 112 (464)
Q Consensus 108 ~i~vl 112 (464)
+++-.
T Consensus 91 ~i~~~ 95 (432)
T TIGR00237 91 EMQPA 95 (432)
T ss_pred EeccC
Confidence 88754
|
This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits. |
| >PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed | Back alignment and domain information |
|---|
Probab=80.30 E-value=27 Score=31.24 Aligned_cols=75 Identities=21% Similarity=0.393 Sum_probs=53.1
Q ss_pred CCCCEEEEEEEEe--eeec-C-CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceE
Q 012426 27 RVGLMIVVAGWVR--TLRA-Q-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (464)
Q Consensus 27 ~~~~~V~v~GwV~--~iR~-~-g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (464)
..++.|+|.|+|. ++.. . +.+.|. |.|+. ..|.|..+...+. +..-|.-|.|+|++... +
T Consensus 49 ~~g~~vrvgG~V~~gSi~~~~~~~~~F~-ltD~~--~~i~V~Y~G~lPd-------~F~eg~~VVv~G~~~~~----g-- 112 (148)
T PRK13254 49 PAGRRFRLGGLVEKGSVQRGDGLTVRFV-VTDGN--ATVPVVYTGILPD-------LFREGQGVVAEGRLQDG----G-- 112 (148)
T ss_pred cCCCeEEEeEEEecCcEEeCCCCEEEEE-EEeCC--eEEEEEECCCCCc-------cccCCCEEEEEEEECCC----C--
Confidence 4689999999995 4543 3 557775 78985 4688887754332 37889999999998432 1
Q ss_pred EEEEeeEEEEecCCCCC
Q 012426 103 ELKVNKIVLVGKSDPSY 119 (464)
Q Consensus 103 el~~~~i~vls~~~~~~ 119 (464)
..+++ +||.||+..|
T Consensus 113 ~F~A~--~vLaKc~skY 127 (148)
T PRK13254 113 VFVAD--EVLAKHDENY 127 (148)
T ss_pred eEEEE--EEEecCCCCC
Confidence 34454 7899998664
|
|
| >PRK14699 replication factor A; Provisional | Back alignment and domain information |
|---|
Probab=80.17 E-value=16 Score=39.25 Aligned_cols=83 Identities=18% Similarity=0.213 Sum_probs=57.7
Q ss_pred CCEEEEEEEEeeeec-------CC---CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCC
Q 012426 29 GLMIVVAGWVRTLRA-------QS---SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGS 98 (464)
Q Consensus 29 ~~~V~v~GwV~~iR~-------~g---~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~ 98 (464)
...|+|.|+|.++=. .| ++.=+.|-|.|| +|.+++..+... .+.. |..||+|.+.+-..+....
T Consensus 176 ~~~V~i~gkVl~~~~~R~f~~~dG~~g~v~~~~igDeTG--~ir~tlW~~~a~--~~~~--l~~Gd~v~I~~a~vr~~~~ 249 (484)
T PRK14699 176 MGDLNLTGKVLEISEIRTFQRKDGTSGKVGNLLLGDETG--TLRVTLWDDKTD--FLNQ--IEYGDTVELINAYARENAF 249 (484)
T ss_pred CCceEEEEEEEeccCceEEecCCCCceEEEEEEEEcCCc--eEEEEEECcccc--cccc--cCCCCEEEEecceEeeccc
Confidence 356999999976522 12 354468999998 499998865321 2335 9999999987665443332
Q ss_pred CceEEEEEeeEEEEecCCC
Q 012426 99 KQKVELKVNKIVLVGKSDP 117 (464)
Q Consensus 99 ~~~~el~~~~i~vls~~~~ 117 (464)
.+.+||.+.+..++.++..
T Consensus 250 ~~~~el~~~~~s~i~~~~~ 268 (484)
T PRK14699 250 TQKVELQVGNRSIIRKSEK 268 (484)
T ss_pred CCceEEEecCceEeecccc
Confidence 2569999998888887753
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 464 | ||||
| 1x54_A | 434 | Crystal Structure Of Asparaginyl-trna Synthetase Fr | 8e-43 | ||
| 3m4p_A | 456 | Entamoeba Histolytica Asparaginyl-Trna Synthetase ( | 3e-34 | ||
| 1b8a_A | 438 | Aspartyl-trna Synthetase Length = 438 | 1e-28 | ||
| 3nel_A | 438 | Aspartyl-Trna Synthetase Complexed With Aspartic Ac | 5e-28 | ||
| 2xgt_A | 435 | Asparaginyl-Trna Synthetase From Brugia Malayi Comp | 1e-27 | ||
| 2xti_A | 437 | Asparaginyl-Trna Synthetase From Brugia Malayi Comp | 1e-27 | ||
| 1wyd_A | 429 | Crystal Structure Of Aspartyl-Trna Synthetase From | 2e-26 | ||
| 1n9w_A | 422 | Crystal Structure Of The Non-Discriminating And Arc | 4e-18 | ||
| 1eov_A | 487 | Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.1 | 2e-13 | ||
| 1asy_A | 490 | Class Ii Aminoacyl Transfer Rna Synthetases: Crysta | 2e-13 | ||
| 3i7f_A | 548 | Aspartyl Trna Synthetase From Entamoeba Histolytica | 8e-09 | ||
| 1eqr_A | 590 | Crystal Structure Of Free Aspartyl-Trna Synthetase | 8e-04 |
| >pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From Pyrococcus Horikoshii Complexed With Asparaginyl-adenylate Length = 434 | Back alignment and structure |
|
| >pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs) In Complex With Asparaginyl-Adenylate Length = 456 | Back alignment and structure |
|
| >pdb|1B8A|A Chain A, Aspartyl-trna Synthetase Length = 438 | Back alignment and structure |
|
| >pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid Length = 438 | Back alignment and structure |
|
| >pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With The Sulphamoyl Analogue Of Asparaginyl-Adenylate Length = 435 | Back alignment and structure |
|
| >pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg Length = 437 | Back alignment and structure |
|
| >pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Sulfolobus Tokodaii Length = 429 | Back alignment and structure |
|
| >pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal- Type Aspartyl-Trna Synthetase From Thermus Thermophilus Length = 422 | Back alignment and structure |
|
| >pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From Yeast Length = 487 | Back alignment and structure |
|
| >pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal Structure Of Yeast Aspartyl-Trna Synthetase Complexed With Trna Asp Length = 490 | Back alignment and structure |
|
| >pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica Length = 548 | Back alignment and structure |
|
| >pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From Escherichia Coli Length = 590 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Length = 434 | Back alignment and structure |
|---|
Score = 578 bits (1492), Expect = 0.0
Identities = 134/446 (30%), Positives = 209/446 (46%), Gaps = 58/446 (13%)
Query: 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD- 68
+K+ +VK + G + +AGWV T F+ + D + + +Q V+ +
Sbjct: 3 EKVYCQEVKP------ELDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGI--VQAVVAKNV 54
Query: 69 --AEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS-YPIQKKR 125
E +++ K + +S+ ++G V + + E+ V K+ ++ P ++
Sbjct: 55 VGEETFEKAKK--LGRESSVIVEGIVKADERAPGGAEVHVEKLEVIQAVSEFPIPENPEQ 112
Query: 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGE 185
S E L HL RT A+ +V+ L A ++ ++G+ + PI+ EG
Sbjct: 113 ASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGAT 172
Query: 186 QFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSN 245
F + +F+K A+L+ S QL E L
Sbjct: 173 LFKL------------------------------KYFDKYAYLSQSAQLYLEAAIFGLEK 202
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDM 305
V++ P+FRAE S T RHL EFW +E E A+ DL D M + Y+V+ L+ K+++
Sbjct: 203 VWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEI 262
Query: 306 DFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYL 365
+ F + E F ++SY +AI++L E WG DL ++ ER L
Sbjct: 263 EMFRDDLTT------LKNTEPPFPRISYDEAIDILQSKGVNVE----WGDDLGADEERVL 312
Query: 366 TEEAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDMLVPR-IGELIGGSQREERLEY 423
TEE F P V YPK IKAFYM+++ +D R V A DML P GE+IGGSQRE+ +
Sbjct: 313 TEE-FDR-PFFVYGYPKHIKAFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQREDDYDK 370
Query: 424 LEGRLDELKLNRDSYWWYLDLRHYGS 449
L R+ E ++ Y WYLDLR YGS
Sbjct: 371 LLNRILEEGMDPKDYEWYLDLRRYGS 396
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Length = 456 | Back alignment and structure |
|---|
Score = 571 bits (1474), Expect = 0.0
Identities = 110/453 (24%), Positives = 187/453 (41%), Gaps = 63/453 (13%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTS 67
I D G ++ GW +R ++ F+E+ DGS QCV+
Sbjct: 17 PIVCNIRDAA-------GLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGY--CQCVIFG 67
Query: 68 DAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQ--------KVELKVNKIVLVGKSDP-S 118
+ L T S+ I G + G +E++V + ++G+S
Sbjct: 68 KELCEPEKVKLL-TRECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDL 126
Query: 119 YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
I K S H+ R+ V ++R+ + + K++ +N F I P I +
Sbjct: 127 ENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKT 186
Query: 179 DCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET 238
CEG F + +F +PA+LT S QL E+
Sbjct: 187 QCEGGSTLFKL------------------------------QYFNEPAYLTQSSQLYLES 216
Query: 239 YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYIL 298
+L + ++RAE S T RHLAE+ +E EL F +D + + V+ ++
Sbjct: 217 VIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCTVIDNVM 276
Query: 299 DNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK-KKFEFLVKWGCDL 357
+ + N ++ + R F +++Y DAI+ + ++G D+
Sbjct: 277 AVHGDKIRKMNPHLK---------LPTRPFKRMTYADAIKYCNDHGILNKDKPFEYGEDI 327
Query: 358 QSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQ-NDDGRTVAAMDMLVPRIGELIGGSQ 416
+ ER +T+E GCP+ + +P ++KAFYM + ++D+L+P +GE++GGS
Sbjct: 328 SEKPERQMTDEI--GCPIFMIHFPSKMKAFYMSKVPGHPDLTESVDLLMPGVGEIVGGSM 385
Query: 417 REERLEYLEGRLDELKLNRDSYWWYLDLRHYGS 449
R + L G LN D Y+WY R YGS
Sbjct: 386 RIWNYDELMGAYKANGLNPDPYYWYTQQRKYGS 418
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Length = 435 | Back alignment and structure |
|---|
Score = 569 bits (1470), Expect = 0.0
Identities = 105/436 (24%), Positives = 189/436 (43%), Gaps = 52/436 (11%)
Query: 23 EGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81
+ + + + GW+ +R Q S+ F + DG+ +Q ++ + +
Sbjct: 5 DLVKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGF--LQVLLMDKLCQTYDALT--VN 60
Query: 82 TGASIWIQGNVVPSQGSKQK---VELKVNKIVLVGKSDPS--YPIQKKRVSREFLRTKAH 136
T ++ I G + K+ EL + ++G + P + + S + + H
Sbjct: 61 TECTVEIYGAIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRH 120
Query: 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSS 196
L R A+ R+R A A + F G++ ++ P + + EG F +
Sbjct: 121 LVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNL------- 173
Query: 197 REAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAE 256
D+F + +FLT S QL ET L +V+ ++RAE
Sbjct: 174 -----------------------DYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAE 210
Query: 257 NSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGI 316
S T RHLAE+ +E E F L D M + V +L + + I
Sbjct: 211 KSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLADE--EAKKLLEHINPKF 268
Query: 317 IDRLSTVAERDFVQLSYTDAIELLIKA--KKKFEFLVKWGCDLQSEHERYLTEEAFGGCP 374
ER F+++ Y DAI+ L + + +F +G D+ ER++T+ P
Sbjct: 269 -----QPPERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTI--NKP 321
Query: 375 VIVSDYPKEIKAFYMRQN-DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKL 433
++++ +P EIKAFYM+++ D ++D+L+P +GE++GGS R + + L +++
Sbjct: 322 ILLNRFPSEIKAFYMQRDAQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEI 381
Query: 434 NRDSYWWYLDLRHYGS 449
+ Y+WYLD R YG+
Sbjct: 382 DPKPYYWYLDQRLYGT 397
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Length = 429 | Back alignment and structure |
|---|
Score = 482 bits (1242), Expect = e-169
Identities = 110/444 (24%), Positives = 184/444 (41%), Gaps = 57/444 (12%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD 68
+ I DV + G ++ AGWV LR FI + D + L Q V+ +
Sbjct: 2 YRSHFIADVTP------EYDGKEVIWAGWVHLLRDLGGKKFIILRDKTGL--GQVVVDKN 53
Query: 69 AEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ---KKR 125
+ + + +T + I ++G V + + + +EL +I L+ K+ P+ K +
Sbjct: 54 SSAFGISQE--LTQESVIQVRGIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVK 111
Query: 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGE 185
+ + L R AV ++++ A + + GFI I +P I AS EG +
Sbjct: 112 ADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQ 171
Query: 186 QFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSN 245
F V +F K AFL S QL E A +
Sbjct: 172 LFPV------------------------------IYFGKEAFLAQSPQLYKELMAGVVER 201
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDM 305
V+ P +RAE S+T HLAEF ++ E+AFAD D M L +V+ I + KE++
Sbjct: 202 VFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKEEL 261
Query: 306 DFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYL 365
N + + +L YT+AIE+L + +G D+ + R L
Sbjct: 262 KILNYEPPE---------VKIPIKRLKYTEAIEILRSKGYNIK----FGDDIGTPELRIL 308
Query: 366 TEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLE 425
EE + D+P + + FY + + ++ L+ + E++ GS R + E LE
Sbjct: 309 NEE-LKEDLYFIVDWPSDARPFYTKSKSENPELSESFDLIYKFLEIVSGSTRNHKREVLE 367
Query: 426 GRLDELKLNRDSYWWYLDLRHYGS 449
L + L +S+ ++L YG
Sbjct: 368 EALKKKGLKPESFEFFLKWFDYGM 391
|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Length = 438 | Back alignment and structure |
|---|
Score = 478 bits (1232), Expect = e-167
Identities = 112/434 (25%), Positives = 190/434 (43%), Gaps = 56/434 (12%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKS-GLITTGA 84
+ G + VAGWV ++ + F+ + D + +Q + K + +
Sbjct: 13 ELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGI--VQITAPKKKVDPELFKLIPKLRSED 70
Query: 85 SIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ---KKRVSREFLRTKAHLRPRT 141
+ ++G V + +K E+ KIV++ +++ P+ K + + + R
Sbjct: 71 VVAVEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRR 130
Query: 142 NTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAE 201
A+ ++R+++ A FF ENGFI I +P I A+ EG E F +
Sbjct: 131 PEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPM------------ 178
Query: 202 SPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET-YATALSNVYTFGPTFRAENSNT 260
+FE+ AFL S QL + A+ L VY P FRAE NT
Sbjct: 179 ------------------KYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNT 220
Query: 261 SRHLAEFWMIEPELAF-ADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDR 319
+RHL E W I+ E+AF D ++ M+ + + + Y+ ++ +++D N +E+
Sbjct: 221 TRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEP---- 276
Query: 320 LSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVI 376
+ F ++SY A+E+L K+ WG D+ +E ER L + E
Sbjct: 277 -----KLPFPRVSYDKALEILGDLGKEIP----WGEDIDTEGERLLGKYMMENENAPLYF 327
Query: 377 VSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNR 435
+ YP E K FY M+ ++ A D+ R E+ G QRE R + L ++ E LN
Sbjct: 328 LYQYPSEAKPFYIMKYDNKPEICRAFDLEY-RGVEISSGGQREHRHDILVEQIKEKGLNP 386
Query: 436 DSYWWYLDLRHYGS 449
+S+ +YL YG
Sbjct: 387 ESFEFYLKAFRYGM 400
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Length = 422 | Back alignment and structure |
|---|
Score = 438 bits (1128), Expect = e-152
Identities = 96/447 (21%), Positives = 180/447 (40%), Gaps = 72/447 (16%)
Query: 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE 70
++ + D+K VG + + G++ R + F+ + D S + +Q V
Sbjct: 2 RVLVRDLK-------AHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGV--VQVVTGGLKL 52
Query: 71 GYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ----KKRV 126
+++ ++G VV + + +E++ ++ ++ + P++ + R
Sbjct: 53 ---------PLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRA 103
Query: 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ 186
+ + L ++ R A +V+ AL ++ F I +P + + EG
Sbjct: 104 NPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGL 163
Query: 187 FCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNV 246
F V D+FEK A+L S QL + V
Sbjct: 164 FGV------------------------------DYFEKRAYLAQSPQLYKQIMVGVFERV 193
Query: 247 YTFGPTFRAENSNTSRHLAEFWMIEPELAF-ADLKDDMACATAYLQYVVRYILDNCKEDM 305
Y P +R E +TSRHL E+ ++ E+ F AD +D M A L ++ L+ +++
Sbjct: 194 YEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEI 253
Query: 306 DFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYL 365
+D +L++ +A +L K++ G DL E ER L
Sbjct: 254 RLLGATWP---------SFPQDIPRLTHAEAKRIL---KEELG--YPVGQDLSEEAERLL 299
Query: 366 TE---EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLE 422
E E +G + V+ YP+ ++ FY +DG T + D+L + E+ G QR R E
Sbjct: 300 GEYAKERWGSDWLFVTRYPRSVRPFYTYPEEDGTT-RSFDLLFRGL-EITSGGQRIHRYE 357
Query: 423 YLEGRLDELKLNRDSYWWYLDLRHYGS 449
L L ++ +++ YL++ YG
Sbjct: 358 ELLESLKAKGMDPEAFHGYLEVFKYGM 384
|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Length = 294 | Back alignment and structure |
|---|
Score = 400 bits (1031), Expect = e-139
Identities = 54/319 (16%), Positives = 104/319 (32%), Gaps = 70/319 (21%)
Query: 135 AHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIP 194
+ + ++ + FF + GF W+ II+
Sbjct: 2 NAVEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPIT--------------- 46
Query: 195 SSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET-YATALSNVYTFGPTF 253
+G+ + + LT S L+ + A L ++ P
Sbjct: 47 --------DPLWPDPAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNI 98
Query: 254 RAEN--SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTW 311
R E+ + RH EF ++ E+ A ++D M + + R + +
Sbjct: 99 RLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTK-- 156
Query: 312 IEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFG 371
F Y++ +E ++G D ++ E
Sbjct: 157 ---------------RFEVFEYSEVLE-------------EFGSDEKASQEM-------- 180
Query: 372 GCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLDE 430
P + + P+E FY R+ D D+++P GE+ G +RE E + ++ +
Sbjct: 181 EEPFWIINIPRE---FYDREVDG--FWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRK 235
Query: 431 LKLNRDSYWWYLDLRHYGS 449
LN DS+ YL++ G
Sbjct: 236 AGLNEDSFRPYLEIAKAGK 254
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Length = 487 | Back alignment and structure |
|---|
Score = 398 bits (1024), Expect = e-135
Identities = 93/473 (19%), Positives = 183/473 (38%), Gaps = 76/473 (16%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTS 67
+K++K VD+ + + ++ V R Q ++ F+ + + L +Q ++ +
Sbjct: 21 QKRVKFVDLDEAKDSDKE-----VLFRARVHNTRQQGATLAFLTLRQQASL--IQGLVKA 73
Query: 68 DAEGY---DQVKS-GLITTGASIWIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPS 118
+ EG + VK G + + + ++G V + Q +E+ + KI + ++ +
Sbjct: 74 NKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEA 133
Query: 119 YPIQKKRVSR---------------EFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQ 163
PI + SR + + RT T A+ R++ + ++
Sbjct: 134 LPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLA 193
Query: 164 ENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFE 223
F + +P + + EG F V +F+
Sbjct: 194 TKKFTEVHTPKLLGAPSEGGSSVFEV------------------------------TYFK 223
Query: 224 KPAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDD 282
A+L S Q N + A VY GP FRAENSNT RH+ EF ++ E+AF + +
Sbjct: 224 GKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHE 283
Query: 283 -MACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLI 341
+ + ++ + +++ ++ + V+L+Y + IE+L
Sbjct: 284 VLDTLSELFVFIFSELPKRFAHEIELVRKQYP---VEEFKLPKDGKMVRLTYKEGIEMLR 340
Query: 342 KAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTV 398
A K+ DL +E+E++L + + + I+ +P EI+ FY +
Sbjct: 341 AAGKEIG----DFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKY 396
Query: 399 AAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS--YWWYLDLRHYGS 449
+ R E++ G+QR L+ R+ L+ + Y D YG
Sbjct: 397 SNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGC 449
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Length = 548 | Back alignment and structure |
|---|
Score = 343 bits (882), Expect = e-113
Identities = 75/366 (20%), Positives = 133/366 (36%), Gaps = 47/366 (12%)
Query: 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVAR 149
+ K + + + + + +VS++ L RT T A+ R
Sbjct: 186 AKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFR 245
Query: 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPK 209
+++A +F F+ I +P + EG F V
Sbjct: 246 IQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEV-------------------- 285
Query: 210 TKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFW 268
+F++ A+L S QL + V+ GP FRAENSNT RHL EF
Sbjct: 286 ----------KYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFE 335
Query: 269 MIEPELAFADLKDD-MACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERD 327
++ E+ + + + ++ I +++ + R
Sbjct: 336 GLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPF------EDLIYRP 389
Query: 328 FVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEI 384
F++L+Y +AIE+L + + D + E L E + I+ +P I
Sbjct: 390 FLRLTYKEAIEMLRASGETIG----DYDDFTTPQEVKLGELIKAKYNTDFYILDKFPAAI 445
Query: 385 KAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLD 443
+ FY M DD + D+ V E+ G+QR E+L R E ++ + Y++
Sbjct: 446 RPFYTMPDIDDPNYSNSYDVFVRG-QEITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIE 504
Query: 444 LRHYGS 449
+GS
Sbjct: 505 SFRFGS 510
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 2e-06
Identities = 75/453 (16%), Positives = 132/453 (29%), Gaps = 139/453 (30%)
Query: 49 FIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGAS--IWI----QGNVVPSQGSKQKV 102
F++ D + +M + S E + S +G W Q +V ++ V
Sbjct: 29 FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV-----QKFV 83
Query: 103 E--LKVNKIVLVGK-----SDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVAR------ 149
E L++N L+ PS + R+ L + + N V+R
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN----VSRLQPYLK 139
Query: 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPK 209
+R AL + + I + G+G+ T + A + + +
Sbjct: 140 LRQAL-----LELRPAKNVLIDGVL-------GSGK----TWV------ALDVCLSYKVQ 177
Query: 210 TK-DGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYT-FGPTFRAENSNTSRHLAEF 267
K D I W L + + ET L + P + + + ++S
Sbjct: 178 CKMDFKIFW----------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN----- 222
Query: 268 WMIEPELAFADLKDDMACATAYLQYVVRY-----ILDNC--KEDMDFFN-------TWIE 313
+L ++ ++ L Y +L N + + FN T
Sbjct: 223 ----IKLRIHSIQAELR----RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 314 KGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKW-GCDLQSEHERYLTEEAFGG 372
K + D LS +S L + K L+K+ C Q L E
Sbjct: 275 KQVTDFLSAATTT---HISLDHHSMTLTPDEVK-SLLLKYLDCRPQD-----LPREVLTT 325
Query: 373 CPVIVS-------DYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLE 425
P +S D + N D ++ +I S L LE
Sbjct: 326 NPRRLSIIAESIRDGLATWD-NWKHVNCD------------KLTTIIESS-----LNVLE 367
Query: 426 -----GRLDELKLNRDS----------YWWYLD 443
D L + S W+ +
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 2e-05
Identities = 71/469 (15%), Positives = 136/469 (28%), Gaps = 147/469 (31%)
Query: 94 PSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE----FLRTKA-HLRPRTNTF---- 144
PS ++ +E + +++ +D K VSR LR LRP N
Sbjct: 105 PSMMTRMYIE-QRDRL----YNDNQ-VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 145 -GA-----VARVRNALAYATHKFFQENGFIWIS-SPIITASDCEGAGEQFCVTTLIPSSR 197
G+ V L+Y + W++ + ++ + P+
Sbjct: 159 LGSGKTWVALDV--CLSYKVQCKM-DFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNWT 214
Query: 198 EAAESPVDAIPKTKDGLIDWSQDFFEKPAF---LTVSGQLNAETYATALSNVY------T 248
++ I + + + + L V L NV
Sbjct: 215 SRSDHS-SNIKLRIHSIQAELRRLLKSKPYENCLLV------------LLNVQNAKAWNA 261
Query: 249 FGP------TFR------AENSNTSRHLA---EFWMIEPE-----LA-FADLKDDM---- 283
F T R ++ T+ H++ + P+ L + D +
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 284 ACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA 343
T + I ++ ++ + ++ W + D+L+T+ E L + E
Sbjct: 322 VLTTNPR--RLSIIAESIRDGLATWDNW-KHVNCDKLTTIIESSLNVL---EPAEY---- 371
Query: 344 KKKFEFL------VK---------WGCDLQSEHERYLTEEAFGGCPVIVSDYPKE----I 384
+K F+ L W D+ + + +V PKE I
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIW-FDVIKSDVMVVVNKLHKYS--LVEKQPKESTISI 428
Query: 385 KAFYMRQNDDGRTVAAM-----------------DMLVPR--------IGELIGGSQREE 419
+ Y+ A+ D++ P IG + + E
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 420 RLE-----YLEGRLDELKLNRDSYWWY---------LDLRHYGSGLVFI 454
R+ +L+ R E K+ DS W L+ Y +I
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP---YI 534
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Length = 580 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 5e-05
Identities = 35/169 (20%), Positives = 69/169 (40%), Gaps = 17/169 (10%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG +V+ GWV R + F+++ D L +Q V + Y + + +
Sbjct: 15 VGEEVVLEGWVNRRRDLGGLIFLDLRDREGL--VQLVAHPASPAYATAER--VRPEWVVR 70
Query: 88 IQGNVVP-SQGSKQ----KVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAHLR--- 138
+G V + + + +VE++++ + ++ ++ P +P+ E LR
Sbjct: 71 AKGLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKY 130
Query: 139 ----PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
R R+R+ + A F GF+ + +P +T S EGA
Sbjct: 131 RYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGA 179
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Length = 585 | Back alignment and structure |
|---|
Score = 40.5 bits (96), Expect = 9e-04
Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 14/165 (8%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD-AEGYDQVKSGLITTGASI 86
VG + + GWV R S+ FI++ D + +Q D A+ + I
Sbjct: 14 VGQQVTLCGWVNRRRDLGSLIFIDMRDREGI--VQVFFDPDRADALKLASE--LRNEFCI 69
Query: 87 WIQGNVVP-SQGSKQ------KVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTK-AHLR 138
+ G V + + ++E+ + + ++ ++D P+ V+ E R K +L
Sbjct: 70 QVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVL-PLDSNHVNTEEARLKYRYLD 128
Query: 139 PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
R + R + +F ++GF+ I +P++T + EGA
Sbjct: 129 LRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGA 173
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 464 | |||
| 3nem_A | 438 | Aspartyl-tRNA synthetase; rossmann fold, OB fold, | 100.0 | |
| 3m4p_A | 456 | Ehasnrs, asparaginyl-tRNA synthetase, putative; am | 100.0 | |
| 3i7f_A | 548 | Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi | 100.0 | |
| 2xgt_A | 435 | Asparaginyl-tRNA synthetase, cytoplasmic; ligase, | 100.0 | |
| 1wyd_A | 429 | Hypothetical aspartyl-tRNA synthetase; archaea, LI | 100.0 | |
| 3bju_A | 521 | Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 100.0 | |
| 4ex5_A | 529 | Lysine--tRNA ligase; structural genomics, niaid, n | 100.0 | |
| 1x54_A | 434 | Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe | 100.0 | |
| 1n9w_A | 422 | Aspartyl-tRNA synthetase 2; biosynthetic protein; | 100.0 | |
| 1e1o_A | 504 | Lysyl-tRNA synthetase, heat inducible; ligase, ami | 100.0 | |
| 3a74_A | 493 | Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, | 100.0 | |
| 1eov_A | 487 | ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy | 100.0 | |
| 1l0w_A | 580 | Aspartyl-tRNA synthetase; space-grown crystal, dim | 100.0 | |
| 1c0a_A | 585 | Aspartyl tRNA synthetase; protein-RNA complex, lig | 100.0 | |
| 4ah6_A | 617 | Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo | 100.0 | |
| 3a5y_A | 345 | GENX, putative lysyl-tRNA synthetase; aminoacyl-tR | 100.0 | |
| 1nnh_A | 294 | Asparaginyl-tRNA synthetase-related peptide; struc | 100.0 | |
| 3qtc_A | 290 | Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet | 99.85 | |
| 12as_A | 330 | Asparagine synthetase; ligase, nitrogen fixation; | 99.68 | |
| 3dsq_A | 288 | Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t | 99.23 | |
| 2rhq_A | 294 | Phenylalanyl-tRNA synthetase alpha chain; heterote | 99.11 | |
| 1b7y_A | 350 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 99.03 | |
| 3pco_A | 327 | Phenylalanyl-tRNA synthetase, alpha subunit; amino | 98.39 | |
| 3l4g_A | 508 | Phenylalanyl-tRNA synthetase alpha chain; aminoacy | 98.36 | |
| 2i4l_A | 458 | Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud | 98.16 | |
| 1evl_A | 401 | Threonyl-tRNA synthetase; amino acid recognition, | 98.13 | |
| 2dq3_A | 425 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 98.1 | |
| 1qe0_A | 420 | Histidyl-tRNA synthetase; class II tRNA synthetase | 98.09 | |
| 1z7m_A | 344 | ATP phosphoribosyltransferase regulatory subunit; | 98.06 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 98.01 | |
| 2j3l_A | 572 | Prolyl-tRNA synthetase; class II aminoacyl- T synt | 97.98 | |
| 1wu7_A | 434 | Histidyl-tRNA synthetase; ligase, structural genom | 97.97 | |
| 1hc7_A | 477 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.94 | |
| 3uh0_A | 460 | Threonyl-tRNA synthetase, mitochondrial; threonine | 97.94 | |
| 1h4v_B | 421 | Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA | 97.89 | |
| 1htt_A | 423 | Histidyl-tRNA synthetase; complex (tRNA synthetase | 97.89 | |
| 1nj8_A | 459 | Proline-tRNA synthetase, proline--tRNA ligase; cla | 97.89 | |
| 3rac_A | 373 | Histidine-tRNA ligase; structural genomics, PSI-bi | 97.87 | |
| 1nj1_A | 501 | PROR, proline-tRNA synthetase, proline--tRNA ligas | 97.84 | |
| 3net_A | 465 | Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas | 97.81 | |
| 4e51_A | 467 | Histidine--tRNA ligase; seattle structural genomic | 97.8 | |
| 3od1_A | 400 | ATP phosphoribosyltransferase regulatory subunit; | 97.79 | |
| 3lc0_A | 456 | Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t | 97.74 | |
| 1ses_A | 421 | Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A | 97.73 | |
| 1wle_A | 501 | Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo | 97.73 | |
| 3lss_A | 484 | Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.72 | |
| 2dq0_A | 455 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 97.69 | |
| 3ial_A | 518 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.68 | |
| 3qne_A | 485 | Seryl-tRNA synthetase, cytoplasmic; amino acid bio | 97.67 | |
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 97.67 | |
| 4hvc_A | 519 | Bifunctional glutamate/proline--tRNA ligase; ligas | 97.63 | |
| 3a32_A | 471 | Probable threonyl-tRNA synthetase 1; aeropyrum per | 97.58 | |
| 3cmq_A | 415 | Phenylalanyl-tRNA synthetase, mitochondrial; class | 97.56 | |
| 4g84_A | 464 | Histidine--tRNA ligase, cytoplasmic; synthetase; 2 | 97.54 | |
| 3err_A | 536 | Fusion protein of microtubule binding domain from | 97.45 | |
| 4g85_A | 517 | Histidine-tRNA ligase, cytoplasmic; synthetase; 3. | 97.44 | |
| 2cja_A | 522 | Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE | 97.44 | |
| 2du7_A | 549 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 97.4 | |
| 3vbb_A | 522 | Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l | 97.35 | |
| 2odr_B | 648 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 97.28 | |
| 2odr_A | 665 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 97.27 | |
| 2odr_D | 685 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 97.25 | |
| 2odr_C | 701 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 97.21 | |
| 1ati_A | 505 | Glycyl-tRNA synthetase; protein biosynthesis, liga | 97.16 | |
| 2du3_A | 534 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 97.02 | |
| 3mf2_A | 346 | BLL0957 protein; aminoacyl-tRNA synthetase, seryl- | 96.94 | |
| 3kdf_D | 132 | Replication protein A 32 kDa subunit; wheat GERM c | 96.84 | |
| 3kf6_A | 159 | Protein STN1; OB fold, chromosomal protein, DNA-bi | 96.82 | |
| 2zt5_A | 693 | Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP | 96.78 | |
| 4gop_B | 136 | Putative uncharacterized protein; OB fold, ssDNA b | 96.73 | |
| 1usy_A | 275 | ATP phosphoribosyltransferase regulatory subunit; | 96.71 | |
| 3dm3_A | 105 | Replication factor A; probably plays AN essential | 96.35 | |
| 3ikl_A | 459 | DNA polymerase subunit gamma-2, mitochondrial; tra | 96.21 | |
| 3e0e_A | 97 | Replication protein A; structural genomics, PSI-2, | 96.13 | |
| 1g5h_A | 454 | Mitochondrial DNA polymerase accessory subunit; in | 95.98 | |
| 2k50_A | 115 | Replication factor A related protein; uncharacteri | 95.86 | |
| 2rhq_B | 795 | Phenylalanyl-tRNA synthetase beta chain; heterotet | 95.78 | |
| 3l4g_B | 589 | Phenylalanyl-tRNA synthetase beta chain; aminoacyl | 95.69 | |
| 3ig2_A | 213 | Phenylalanyl-tRNA synthetase beta chain; phers, MC | 95.55 | |
| 2pi2_A | 270 | Replication protein A 32 kDa subunit; FULL-length | 95.49 | |
| 1nnx_A | 109 | Protein YGIW; structural genomics, hypothetical pr | 95.44 | |
| 3au7_A | 402 | TIAS, putative uncharacterized protein; ATP hydrol | 95.07 | |
| 3ica_A | 213 | Phenylalanyl-tRNA synthetase beta chain; APC61692. | 94.66 | |
| 3kf8_A | 220 | Protein STN1; OB fold; 2.40A {Candida tropicalis m | 94.03 | |
| 2kbn_A | 109 | Conserved protein; nucleic acid binding protein, b | 93.93 | |
| 2k75_A | 106 | Uncharacterized protein TA0387; closed beta barrel | 93.11 | |
| 4gop_A | 114 | Putative uncharacterized protein; OB fold, ssDNA b | 92.8 | |
| 1o7i_A | 119 | SSB, SSO2364, single stranded DNA binding protein; | 92.76 | |
| 1b7y_B | 785 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 92.14 | |
| 3kdf_A | 121 | Replication protein A 14 kDa subunit; wheat GERM c | 92.1 | |
| 2pi2_E | 142 | Replication protein A 14 kDa subunit; FULL-length | 92.05 | |
| 3fhw_A | 115 | Primosomal replication protein N; PRIB BPR162 X-RA | 90.01 | |
| 2hpi_A | 1220 | DNA polymerase III alpha subunit; POL-beta-like nu | 89.81 | |
| 1ynx_A | 114 | Replication factor-A protein 1; canonical OB fold, | 87.1 | |
| 1jmc_A | 246 | Protein (replication protein A (RPA)); human ssDNA | 83.29 | |
| 3f1z_A | 133 | Putative nucleic acid-binding lipoprotein; YP_0013 | 82.59 | |
| 3k8a_A | 103 | Putative primosomal replication protein; beta-barr | 81.77 | |
| 3mxn_B | 150 | RECQ-mediated genome instability protein 2; bloom | 81.23 | |
| 1j6q_A | 136 | Cytochrome C maturation protein E; all-beta protei | 80.1 |
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-96 Score=762.13 Aligned_cols=401 Identities=27% Similarity=0.465 Sum_probs=362.4
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc---cchhhhhcCCCCCCcEE
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASI 86 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V 86 (464)
++++|++|.+. ..|++|+|+|||+++|.+||++|++|||++|. ||||++++. ..++.++. |+.||+|
T Consensus 3 rt~~~~~l~~~------~~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~~~~--l~~~~~V 72 (438)
T 3nem_A 3 RTHYSSEITEE------LNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGI--VQITAPKKKVDPELFKLIPK--LRSEDVV 72 (438)
T ss_dssp CSCCGGGCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEEETTTSCHHHHHHGGG--CCTTCEE
T ss_pred eEEEHHHcchh------cCCCEEEEEEEEEEEecCCCeEEEEEEECCee--EEEEEeCCcCCHHHHHHHhc--CCCCCEE
Confidence 78999999874 67999999999999999999999999999985 999999764 23566778 9999999
Q ss_pred EEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCccc---cchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhh
Q 012426 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQ 163 (464)
Q Consensus 87 ~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~---~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~ 163 (464)
.|+|+|+++++..+++||++++++|||+|..++|++.+. ++.++++++||||+|++.++++|++||+|++++|+||.
T Consensus 73 ~V~G~v~~~~~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~Rs~i~~~iR~f~~ 152 (438)
T 3nem_A 73 AVEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFFH 152 (438)
T ss_dssp EEEEEEEECTTSTTSEEEEEEEEEEEECBCSSCSSCTTSSSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCCCCcEEEEEEEEEEEecCCCCCCCCccccccCCHHHHhhchHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999886678999999999999998779988654 78899999999999999999999999999999999999
Q ss_pred hCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHHH-Hhhc
Q 012426 164 ENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET-YATA 242 (464)
Q Consensus 164 ~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lql-l~~g 242 (464)
++||+||+||+|++++|||+++.|.+ +||++++||+||||||||+ +++|
T Consensus 153 ~~gF~EVeTPiL~~~~~eg~~~~f~~------------------------------~~~~~~~yL~~Spql~~q~l~~~g 202 (438)
T 3nem_A 153 ENGFIEIHTPKIIATATEGGTELFPM------------------------------KYFEEDAFLAQSPQLYKQIMMASG 202 (438)
T ss_dssp HTTCEECCCCSEESSCSSCSSSCCEE------------------------------EETTEEEEECSCSHHHHHHGGGTT
T ss_pred HCCcEEEeCCEEecCCCCCCccceeE------------------------------eeCCccEEEecChHHHHHHHHhcC
Confidence 99999999999999999999999976 4789999999999999985 6799
Q ss_pred cCceEEEccccccCCCCCccccccchhccceeccCC-HHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHh
Q 012426 243 LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLS 321 (464)
Q Consensus 243 ~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~-~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 321 (464)
++||||||||||||+++|+||||||||||||++|+| ++|+|+++|+||+++++.+.+++..++.+++...
T Consensus 203 ~~rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~v~~~~~~~l~~~~~~l--------- 273 (438)
T 3nem_A 203 LDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFEL--------- 273 (438)
T ss_dssp CCEEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCCC---------
T ss_pred CCceEEEcceEECCCCCCcccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHhhccccc---------
Confidence 999999999999999998999999999999999999 9999999999999999999988876666554321
Q ss_pred hhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcc---cCCCeeeeeCCCCCcccccccC-CCCCc
Q 012426 322 TVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAF---GGCPVIVSDYPKEIKAFYMRQN-DDGRT 397 (464)
Q Consensus 322 ~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~---~~~p~fI~~yP~~~~pfy~~~~-~d~~~ 397 (464)
..+..||+||||.||++++++.|.+ +.||.+++.++|++|++.+. ..+|+||+|||++++|||++.+ +|+++
T Consensus 274 ~~~~~pf~rity~eai~~l~~~g~~----~~~~~dl~~~~e~~l~~~~~~~~~~~p~fi~~yP~~~~pfy~k~~~~~p~~ 349 (438)
T 3nem_A 274 EEPKLPFPRVSYDKALEILGDLGKE----IPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPEI 349 (438)
T ss_dssp CCCCSSCCEEEHHHHHHHHHHTTCC----CCTTSCCCHHHHHHHHHHHHHHHCCSEEEEESCBGGGSCTTBCBCTTSTTB
T ss_pred ccCCCCceEEEHHHHHHHHHHcCCC----CCCCCCCCcHHHHHHHHHhhhhcCCCCEEEECCchhhCccccccCCCCCCc
Confidence 1245689999999999999988754 46899999999999876542 1389999999999999987655 46789
Q ss_pred eeeEEEeeCCccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 398 VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 398 ~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
++|||||++| +||+|||+|+|||++|++||+++|++++.++|||+|++||+ | |+|++||.+|||||
T Consensus 350 ~~rfdL~~~G-~Ei~nG~~el~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GlGidRLvm~l~g~~~Irdv 426 (438)
T 3nem_A 350 CRAFDLEYRG-VEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREV 426 (438)
T ss_dssp BSEEEEEETT-EEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGG
T ss_pred eEEEEEEECC-EEEEeCeeecCCHHHHHHHHHHcCCChhHHHHHHHHHHcCCCCceEEEEhHHHHHHHHhCCCcHHHc
Confidence 9999999999 69999999999999999999999999999999999999998 2 99999999999986
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-95 Score=757.25 Aligned_cols=403 Identities=29% Similarity=0.505 Sum_probs=345.6
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCC-CeEEEEEEeCcCCcceEEEEeCCc-cchhhhhcCCCCCCcEEE
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIW 87 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g-~~~Fi~LrD~sg~~~iQvv~~~~~-~~~~~~~~~~l~~g~~V~ 87 (464)
+++.|+++. +..|++|+|+|||+++|.+| +++|++|||++|. ||||++++. .....+.. |+.||+|.
T Consensus 18 ~~~~i~~~~-------~~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~~--l~~g~~V~ 86 (456)
T 3m4p_A 18 IVCNIRDAA-------GLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGY--CQCVIFGKELCEPEKVKL--LTRECSLE 86 (456)
T ss_dssp CCEECCSTT-------CCCSSEEEEEEEEEEEECCSSSEEEEEEECSSCE--EEEEEESTTTTCHHHHTT--CCTTCEEE
T ss_pred eEEEhhhhh-------hcCCCEEEEEEEEEEEecCCCceEEEEEEeCCcc--EEEEEecccchhhHHhhc--CCCccEEE
Confidence 457788883 37899999999999999996 6999999999985 999999743 22223456 99999999
Q ss_pred EEEEEEeCCCCC--------ceEEEEEeeEEEEecCCCCCCC-CccccchhhhhhcceecCCCccchhhhhHHHHHHHHH
Q 012426 88 IQGNVVPSQGSK--------QKVELKVNKIVLVGKSDPSYPI-QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYAT 158 (464)
Q Consensus 88 V~G~v~~~~~~~--------~~~el~~~~i~vls~~~~~~P~-~~~~~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~ 158 (464)
|+|+|++++.+. +++||++++++||++|..++|- ..+.++.++++++||||+|++.++++|++||+|++++
T Consensus 87 V~G~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a~~~~~~~~~~~~~~e~r~~~R~LdlR~~~~~~~lr~Rs~i~~~i 166 (456)
T 3m4p_A 87 ITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYF 166 (456)
T ss_dssp EEEEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECCCGGGTTTSCTTCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred EEeEEEecCCcccCcccCCCCcEEEEEeEEEEEecCCCCCcccccccCCHHHHhhchHHhhhcHHHHHHHHHHHHHHHHH
Confidence 999999876532 6799999999999999743331 1235678999999999999999999999999999999
Q ss_pred HHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHHH
Q 012426 159 HKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET 238 (464)
Q Consensus 159 r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lql 238 (464)
|+||.++||+||+||+|++++|||++++|++ +||++++||+||||||||+
T Consensus 167 R~ff~~~gF~EVeTPiL~~s~~eGg~~~f~~------------------------------~~~~~~~~L~~SpqL~lq~ 216 (456)
T 3m4p_A 167 RKYYHDNHFTEIQPPTIVKTQCEGGSTLFKL------------------------------QYFNEPAYLTQSSQLYLES 216 (456)
T ss_dssp HHHHHHTTCEECCCCSEEC------CCCCEE------------------------------EETTEEEEECSCCHHHHHT
T ss_pred HHHHHhCCCEEEeCCeeecCCCCCccccccc------------------------------cccCCCcccccCHHHHHHH
Confidence 9999999999999999999999999999965 6899999999999999997
Q ss_pred HhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHH
Q 012426 239 YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIID 318 (464)
Q Consensus 239 l~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~ 318 (464)
+++|++||||||||||||+++|+||||||||||||++|+|++|+|+++|+||+++++.+.+++...+......
T Consensus 217 l~~g~~rVyeig~~FR~E~~~t~rH~pEFtmlE~e~af~d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~------- 289 (456)
T 3m4p_A 217 VIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPH------- 289 (456)
T ss_dssp THHHHSSEEEEEEEECCCSCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-------
T ss_pred HHhccCcEEEEEhheecCCCCCCcchHHHHHhHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCcc-------
Confidence 7778999999999999999999999999999999999999999999999999999999987654333222110
Q ss_pred HHhhhhCCCCCCCCHHHHHHHHHhcCCCcc-cCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccC-CCCC
Q 012426 319 RLSTVAERDFVQLSYTDAIELLIKAKKKFE-FLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN-DDGR 396 (464)
Q Consensus 319 ~l~~~~~~~~~~it~~ea~~~l~~~~~~~~-~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~-~d~~ 396 (464)
+ ..+..||+||||.||+++|++.|++.+ .+..||.+++.++|++|.+.+ . +|+||+|||++++|||++.+ +|++
T Consensus 290 -~-~~~~~pf~rity~eAi~~l~~~g~~~~~~~~~~g~~l~~~~e~~l~~~~-~-~P~fv~~yP~~~~pfy~k~~~~dp~ 365 (456)
T 3m4p_A 290 -L-KLPTRPFKRMTYADAIKYCNDHGILNKDKPFEYGEDISEKPERQMTDEI-G-CPIFMIHFPSKMKAFYMSKVPGHPD 365 (456)
T ss_dssp -C-CCCCSSCEEEEHHHHHHHHHHHTCCSSSSCCCTTCCCCHHHHHHHHHHH-T-SCEEEECCBGGGSCTTBCEETTEEE
T ss_pred -c-ccCCCCCeEeeHHHHHHHHHHcCCCccccCcchHHHHHHHHHHHHHHHh-C-ceEEEECCCchhCccccccCCCCCC
Confidence 0 123468999999999999998886543 346799999999999988764 4 89999999999999987654 5678
Q ss_pred ceeeEEEeeCCccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 397 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 397 ~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
+++|||||++|+|||+|||+|+||+++|.+||++.|++++.++|||++++||+ | |||++||.+||||+
T Consensus 366 ~~~rfdL~~~G~gEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yld~~~~G~pP~gG~GlGidRLvm~ltg~~~Irdv 444 (456)
T 3m4p_A 366 LTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIRKV 444 (456)
T ss_dssp EECEEEEEETTTEEEEEEEEBCCCHHHHHHHHHTTTCCCGGGHHHHGGGTSSCCCEEEEEEEHHHHHHHHHTCSCGGGG
T ss_pred eeEEEEEEeCCceEEccceeecCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCcccEEEEcHHHHHHHHcCCccHHHe
Confidence 99999999999999999999999999999999999999999999999999998 2 99999999999986
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-92 Score=741.21 Aligned_cols=404 Identities=24% Similarity=0.366 Sum_probs=333.6
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc----cchhhhhcCCCCCCcE
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA----EGYDQVKSGLITTGAS 85 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~----~~~~~~~~~~l~~g~~ 85 (464)
.+++|++|.. ...|++|+|+|||+++|.+||++|++|||++| .||||++.+. ..++.++. |+.||+
T Consensus 49 ~~~~i~~l~~------~~~g~~V~v~Gwv~~~R~~gkl~Fi~LrD~~g--~iQ~v~~~~~~~~~~~~~~~~~--l~~es~ 118 (548)
T 3i7f_A 49 KYTEIEELVP------AMAEKTVTIRARVQAVRGKGNMVFLFLRKGIY--TCQALVMKSETISKEFVQFCQK--ISAESI 118 (548)
T ss_dssp CBCCGGGCSG------GGTTCEEEEEEEEEEEEECSSEEEEEEEETTE--EEEEEEECSSSSCHHHHHHHHT--CCTTEE
T ss_pred ceEEhhhcch------hcCCCEEEEEEEEEEEecCCCeEEEEEEECCe--eEEEEEECCCccCHHHHHHHhC--CCCCCE
Confidence 4577888875 37899999999999999999999999999997 5999998632 11334667 999999
Q ss_pred EEEEEEEEeCCC-----CCceEEEEEeeEEEEecCCCCCCCCccc-----------------------------------
Q 012426 86 IWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKR----------------------------------- 125 (464)
Q Consensus 86 V~V~G~v~~~~~-----~~~~~el~~~~i~vls~~~~~~P~~~~~----------------------------------- 125 (464)
|.|+|+|++++. +.+++||++++|+|||+|..++|++.++
T Consensus 119 V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (548)
T 3i7f_A 119 CDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLT 198 (548)
T ss_dssp EEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECCCBSCSSCSGGGSCCHHHHHHHHHHTTCC-----------------
T ss_pred EEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecCCCCCCCCchhccccccccccccccccccccccccccccccccccc
Confidence 999999999864 2467999999999999998778987421
Q ss_pred -----------------------cchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCC
Q 012426 126 -----------------------VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG 182 (464)
Q Consensus 126 -----------------------~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg 182 (464)
.+.++++++||||||++.++++|++||++++++|+||.++||+||+||+|++++|||
T Consensus 199 ~~~~~~e~~~~l~~~~~~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~eg 278 (548)
T 3i7f_A 199 KRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEG 278 (548)
T ss_dssp --------------CCCCCCCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSBC------
T ss_pred cccccccccccccccccccccccCCHHHhhhchhhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccCCC
Confidence 245667799999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHH-HHhhccCceEEEccccccCCCCCc
Q 012426 183 AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTS 261 (464)
Q Consensus 183 ~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lq-ll~~g~~rVfeI~~~FR~E~~~t~ 261 (464)
++++|.+ +||+.++||+|||||||| ++++|++||||||||||||+++|+
T Consensus 279 ga~~F~v------------------------------~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~t~ 328 (548)
T 3i7f_A 279 GSNIFEV------------------------------KYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTR 328 (548)
T ss_dssp -------------------------------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCSS
T ss_pred CcceeEE------------------------------ecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEecCCCCCC
Confidence 9999975 578999999999999996 788999999999999999999999
Q ss_pred cccccchhccceeccC-CHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHH
Q 012426 262 RHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELL 340 (464)
Q Consensus 262 rHl~EFtmlE~e~a~~-~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l 340 (464)
|||||||||||||+|. +++++|+++|+||+++++.+.++|..++.++....+.. .+ .-.||++|||.||+++|
T Consensus 329 RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~~~~~~~el~~~~~~~~~~---~~---~~~pf~rit~~eai~~l 402 (548)
T 3i7f_A 329 RHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFE---DL---IYRPFLRLTYKEAIEML 402 (548)
T ss_dssp SCCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCC---CC---CCCSCEEEEHHHHHHHH
T ss_pred CcchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCcc---cc---ccCCcceeEHHHHHHHH
Confidence 9999999999999998 69999999999999999999888776665443221110 01 11589999999999999
Q ss_pred HhcCCCcccCCCccccccHHHHHHhhh---hcccCCCeeeeeCCCCCcccccccC-CCCCceeeEEEeeCCccccccCcc
Q 012426 341 IKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDMLVPRIGELIGGSQ 416 (464)
Q Consensus 341 ~~~~~~~~~~~~~~~~l~~~~e~~l~e---~~~~~~p~fI~~yP~~~~pfy~~~~-~d~~~~~~fdl~~~GigEi~~G~~ 416 (464)
++.|.+ ..|+.|++.++|++|++ +.+...++||+|||.+++|||++.+ +|+++++|||||++| +||+|||+
T Consensus 403 ~~~g~~----~~~~~dl~~~~e~~l~~~i~~~~~~~~~~i~~yP~~~~pfYak~~~~dp~~~~rFDL~i~G-~Ei~nG~~ 477 (548)
T 3i7f_A 403 RASGET----IGDYDDFTTPQEVKLGELIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVFVRG-QEITSGAQ 477 (548)
T ss_dssp HHTTCC----CCTTCCCCHHHHHHHHHHHHHHHCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETT-EEEEEEEE
T ss_pred HHcCCC----CCCccccchHHHHHHHHHHHHHcCCCeEEEecCccccCchhhccCCCCCCeEEEEEEEECC-EEEeeCee
Confidence 998865 35788999999998864 2334245678999999999997644 578999999999999 69999999
Q ss_pred ccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 417 REERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 417 r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
|+|||++|++||+++|++++.++|||+|++||| | |||++||.+||||+
T Consensus 478 rl~Dp~~~~~R~~~~G~d~~~~e~yl~al~yG~PPhgG~GlGiDRLvMlltg~~nIRdV 536 (548)
T 3i7f_A 478 RIHDPEFLMKRCIEKGVDPATLKDYIESFRFGSWPHAGCGIGLERITMLYLGIPNIRKV 536 (548)
T ss_dssp ECCCHHHHHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGG
T ss_pred ecCCHHHHHHHHHHcCCChHHHHHHHHHHhCCCCCceEEEEcHHHHHHHHhCCccHHHh
Confidence 999999999999999999999999999999988 2 99999999999986
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-92 Score=729.74 Aligned_cols=399 Identities=28% Similarity=0.534 Sum_probs=343.3
Q ss_pred ecccccCCCCCCCCCCCCEEEEEEEEeeeecCC-CeEEEEEEeCcCCcceEEEEeCCc-cchhhhhcCCCCCCcEEEEEE
Q 012426 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWIQG 90 (464)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g-~~~Fi~LrD~sg~~~iQvv~~~~~-~~~~~~~~~~l~~g~~V~V~G 90 (464)
+|+++.+ ..|++|+|+|||+++|.+| +++|++|||++|. ||||++.+. ..|+.. . |+.||+|.|+|
T Consensus 2 ~i~~~~~-------~~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~-~--l~~~~~v~v~G 69 (435)
T 2xgt_A 2 KIRDLVK-------HRNERVCIKGWIHRMRRQGKSLMFFILRDGTGF--LQVLLMDKLCQTYDAL-T--VNTECTVEIYG 69 (435)
T ss_dssp CGGGGGG-------GTTSEEEEEEEEEEEEECTTSEEEEEEECSSCE--EEEEEEGGGGSSHHHH-H--CCTTCEEEEEE
T ss_pred chhhhhh-------cCCCEEEEEEEEEEecccCCCcEEEEEEECCce--EEEEECCcchhHHHHh-c--CCCCCEEEEEE
Confidence 4566643 6789999999999999995 7999999999985 999998543 234433 6 99999999999
Q ss_pred EEEeCC---CCCceEEEEEeeEEEEecCCCC--CCCCccccchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhC
Q 012426 91 NVVPSQ---GSKQKVELKVNKIVLVGKSDPS--YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 165 (464)
Q Consensus 91 ~v~~~~---~~~~~~el~~~~i~vls~~~~~--~P~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~ 165 (464)
+|++++ ++.+++||++++++||+++.+. +|++.+.++.++++++||||+|++.++++|++||+|++++|+||.++
T Consensus 70 ~v~~~~~~~~~~g~~El~~~~~~vl~~~~p~~~~pl~~~~~~~e~r~~~R~Ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~ 149 (435)
T 2xgt_A 70 AIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNA 149 (435)
T ss_dssp EEEECC------TTEEEEEEEEEEEECCCTTHHHHHCC--CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCcCCCCcEEEEEEEEEEeecCCCcccccccccCCCHHHHhhCeeeeecCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999976 3456799999999999986432 67777778889999999999999999999999999999999999999
Q ss_pred CcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHHHHhhccCc
Q 012426 166 GFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSN 245 (464)
Q Consensus 166 gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~r 245 (464)
||+||+||+|+++++||++++|.+ +||++++||+||||||||++++|++|
T Consensus 150 gFlEVeTPiL~~s~~eG~~~~F~~------------------------------~~~g~~~~L~~SpqLylq~l~~g~~r 199 (435)
T 2xgt_A 150 GYVEVAPPTLVQTQVEGGSTLFNL------------------------------DYFGEQSFLTQSSQLYLETCIPTLGD 199 (435)
T ss_dssp TCEECCCCSEESCCSSCTTSCCEE------------------------------EETTEEEEECSCSHHHHHHHHHHHCS
T ss_pred CCEEEECCeEeeccCCCchhceee------------------------------ccCCcccccCCChHHHHHHhhhccCc
Confidence 999999999999999999999965 58899999999999999976678999
Q ss_pred eEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCccc--ccccccccccchHHHHhhh
Q 012426 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKED--MDFFNTWIEKGIIDRLSTV 323 (464)
Q Consensus 246 VfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~--i~~~~~~~~~~~~~~l~~~ 323 (464)
|||||||||||+++|+||+||||||||||+|+|++|+|+++|+||+++++.+.+.+... +...... + ..
T Consensus 200 vfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~~--------~-~~ 270 (435)
T 2xgt_A 200 VFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLADEEAKKLLEHINPK--------F-QP 270 (435)
T ss_dssp EEEEEEEECCCSSCCTTCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHSTT--------C-CC
T ss_pred eEEEecceecCCCCccccccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhccccchhhhhhcccc--------c-cc
Confidence 99999999999999999999999999999999999999999999999999997654211 1111100 0 01
Q ss_pred hCCCCCCCCHHHHHHHHHhcCCCccc--CCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccCC-CCCceee
Q 012426 324 AERDFVQLSYTDAIELLIKAKKKFEF--LVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAA 400 (464)
Q Consensus 324 ~~~~~~~it~~ea~~~l~~~~~~~~~--~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~~-d~~~~~~ 400 (464)
...||+||||.||++++++.+...+. +..||.++..++|++|.+.+ . +|+||+|||.+++|||++.++ |+++++|
T Consensus 271 ~~~pf~rity~ea~~~~~~~~~~~~~~~~~~~g~~l~~~~e~~l~~~~-~-~p~fv~d~P~~~~~f~a~~~~~~p~~~~~ 348 (435)
T 2xgt_A 271 PERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTI-N-KPILLNRFPSEIKAFYMQRDAQDNTLTES 348 (435)
T ss_dssp CCSSCEEEEHHHHHHHHHHTTCBCTTSCBCCTTSCCCHHHHHHHHHHH-T-SCEEEECCBGGGSCTTBCBCSSCTTBBSE
T ss_pred cCCCceEEEHHHHHHHHHhcCCCcccccccchhhHHHHHHHHHHHHhc-C-CcEEEECCChhhCcccCCCCCCCcCeEEE
Confidence 23589999999999999887754322 35789999999999987754 4 799999999999999877554 6789999
Q ss_pred EEEeeCCccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 401 MDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 401 fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
||||++|+|||+|||+|+||+++|++||++.|++++.++|||+|++||+ | |||+++|.+||||+
T Consensus 349 fdl~~~G~~Ei~~G~~r~~d~~~q~~r~~~~g~~~~~~~~yl~a~~yG~pPhgG~glGiDRLvmll~g~~~Irdv 423 (435)
T 2xgt_A 349 VDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDV 423 (435)
T ss_dssp EEEEETTTEEEEEEEEBCCCHHHHHHHHHHHTCCCGGGHHHHHHHHSSCCCEEEEEEEHHHHHHHHHTCSCGGGG
T ss_pred EEEEcCCceEEEeeeEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCceEEEhHHHHHHHHcCCCcHHhE
Confidence 9999999999999999999999999999999999999999999999998 2 99999999999985
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-91 Score=724.55 Aligned_cols=400 Identities=28% Similarity=0.433 Sum_probs=362.1
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEE
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (464)
++++|++|... ..|++|+|+|||+++|.+|+++|++|||++|. ||||++++...|+.++. |+.||+|.|+
T Consensus 3 ~~~~~~~l~~~------~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~--l~~~~~v~v~ 72 (429)
T 1wyd_A 3 RSHFIADVTPE------YDGKEVIWAGWVHLLRDLGGKKFIILRDKTGL--GQVVVDKNSSAFGISQE--LTQESVIQVR 72 (429)
T ss_dssp CSSCTTTCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEECTTSTTHHHHTT--CCTTCEEEEE
T ss_pred eEEEHHHhhHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCee--EEEEEeCChHHHHHHHh--CCCCCEEEEE
Confidence 57889998863 67999999999999999999999999999985 99999876555676777 9999999999
Q ss_pred EEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCccc---cchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhCC
Q 012426 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENG 166 (464)
Q Consensus 90 G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~---~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~g 166 (464)
|+|.+++++.+++||++++++|||+|..++|++.+. ++.++++++||||+|++.+++++++||+|++++|+||.++|
T Consensus 73 G~v~~~~~~~~~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~ff~~~g 152 (429)
T 1wyd_A 73 GIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEG 152 (429)
T ss_dssp EEEEECSSSGGGEEEEEEEEEEEECCCSSCSSCSSSCCCCCHHHHHHTHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEecCCCCccEEEEEeEEEEeccCCCCCCCCccccccCChhHhhhccceeccCHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999988788999999999999997679988765 78899999999999999999999999999999999999999
Q ss_pred cEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHHHHhhccCce
Q 012426 167 FIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNV 246 (464)
Q Consensus 167 F~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~rV 246 (464)
|+||+||+|+++++||++++|.+ +|+++++||+||||+|+|++++|++||
T Consensus 153 F~eV~TP~l~~~~~e~~~~~f~~------------------------------~~~~~~~~L~~Spql~~~~~~~g~~rv 202 (429)
T 1wyd_A 153 FIEIFTPKIIASATEGGAQLFPV------------------------------IYFGKEAFLAQSPQLYKELMAGVVERV 202 (429)
T ss_dssp CEECCCCSEESSCSSTTCCCCEE------------------------------EETTEEEEECSCCHHHHHHHHHHHSEE
T ss_pred CEEEECCEEEeeCCCCCceeEEE------------------------------ecCCceEEecCCcHHHHHHHHhCcCce
Confidence 99999999999999999999975 478899999999999998888899999
Q ss_pred EEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhCC
Q 012426 247 YTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAER 326 (464)
Q Consensus 247 feI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~ 326 (464)
|+||||||||++++.||+|||||||+|++|.|++|+|+++|+|++++++.+.++|..++++.+...+ .++.
T Consensus 203 f~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~l~~~~~~~~~~~l~~~~~~~~---------~l~~ 273 (429)
T 1wyd_A 203 FEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPP---------EVKI 273 (429)
T ss_dssp EEEEEEECCCCCCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCCCC---------CCCS
T ss_pred EEEcccccccCCccccccceeeEeeeeecCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcccccc---------cCCC
Confidence 9999999999999899999999999999999999999999999999999999887766665543211 1246
Q ss_pred CCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccC-CCCCceeeEEEee
Q 012426 327 DFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDMLV 405 (464)
Q Consensus 327 ~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~-~d~~~~~~fdl~~ 405 (464)
||+|+||.||++++++.|.+ ..||.+++.++|++|.+.+.. +|+||+|||..++|||++.+ +|+++++|||||+
T Consensus 274 pf~rity~eA~~~~~~~g~~----~~~~~~l~~~~e~~l~~~~~~-~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~ 348 (429)
T 1wyd_A 274 PIKRLKYTEAIEILRSKGYN----IKFGDDIGTPELRILNEELKE-DLYFIVDWPSDARPFYTKSKSENPELSESFDLIY 348 (429)
T ss_dssp SCEEEEHHHHHHHHHHSSCC----CCTTSCCCHHHHHHHHHHHCC-SEEEEECCBGGGSCTTBCBCCC-CCBBSEEEEEE
T ss_pred CccEEEHHHHHHHHHhcCCC----cccCcccCcHHHHHHHHHhcc-CCEEEecCChhhChhhCCcCCCCCCeEEEEEEEE
Confidence 89999999999999887743 468889999999998876543 69999999999999987655 4677999999999
Q ss_pred CCccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 406 PRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 406 ~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
+|+ ||+|||+|+||+++|++||+++|++++.++|||+|++||+ | |+|+++|.+||||+
T Consensus 349 ~G~-Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdv 417 (429)
T 1wyd_A 349 KFL-EIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEI 417 (429)
T ss_dssp TTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGSCCCCEEEEEEEHHHHHHHHHCCCCGGGT
T ss_pred CCE-EEEeCeeeeCCHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhE
Confidence 998 9999999999999999999999999999999999999998 2 99999999999985
|
| >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-90 Score=731.57 Aligned_cols=421 Identities=16% Similarity=0.208 Sum_probs=360.7
Q ss_pred cccccceecccccCCCCC---CCCCCCCEEEEEEEEeeeecCC-CeEEEEEEeCcCCcceEEEEeCCcc----chhhh-h
Q 012426 6 GEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAE----GYDQV-K 76 (464)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~GwV~~iR~~g-~~~Fi~LrD~sg~~~iQvv~~~~~~----~~~~~-~ 76 (464)
++|.++++++++.+.|++ ++...+++|+|+|||+++|.+| |++|++|||++| .||||++++.. .|+.+ +
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gkk~~F~~LrD~sg--~iQvv~~~~~~~~~~~~~~~~~ 106 (521)
T 3bju_A 29 HKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV--KLQVMANSRNYKSEEEFIHINN 106 (521)
T ss_dssp SCCCCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSSSEEEEEEEETTE--EEEEEEEGGGSSCHHHHHHHHH
T ss_pred CcCcCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCCCcEEEEEEECCE--EEEEEEECCccCCHHHHHHHHh
Confidence 578999999999876553 2344578999999999999999 999999999997 59999986532 35553 5
Q ss_pred cCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCcc-ccchhhhhhcceecCC-CccchhhhhHHHHH
Q 012426 77 SGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKK-RVSREFLRTKAHLRPR-TNTFGAVARVRNAL 154 (464)
Q Consensus 77 ~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~-~~~~~~~r~~r~l~~R-~~~~~~~~~~rs~i 154 (464)
. |+.||+|.|+|+|.+++++ ++||+|++|++|++|..++|.... ..+.+.+.++||||+| ++.++++|++||+|
T Consensus 107 ~--l~~gd~V~V~G~v~~t~~g--e~ei~~~~i~~l~~~~~~lP~~~~~~~~~e~r~r~RyLdLr~~~~~~~~~r~Rs~i 182 (521)
T 3bju_A 107 K--LRRGDIIGVQGNPGKTKKG--ELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKI 182 (521)
T ss_dssp H--CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCCSCCCCC----CCHHHHHHCHHHHHHHCHHHHHHHHHHHHH
T ss_pred c--CCCCCEEEEEEEEEecCCC--CEEEEEeEEEEeecCCCCCCCccccccChhhhhhhhhhhHhcCHHHHHHHHHHHHH
Confidence 7 9999999999999999865 499999999999999866665433 2467778899999999 78999999999999
Q ss_pred HHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhH
Q 012426 155 AYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL 234 (464)
Q Consensus 155 ~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql 234 (464)
++++|+||.++||+||+||+|+++++++++++|. +++ ++|++++||+|||||
T Consensus 183 ~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~-t~~---------------------------~~~~~~~yL~~SpqL 234 (521)
T 3bju_A 183 ITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFI-TYH---------------------------NELDMNLYMRIAPEL 234 (521)
T ss_dssp HHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCE-EEE---------------------------TTTTEEEEECSCSHH
T ss_pred HHHHHHHHHHCCCEEEeCceeeccCCCcccccee-eec---------------------------ccCCcceEeeCCHHH
Confidence 9999999999999999999999988888899994 443 478999999999999
Q ss_pred HHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcc----------
Q 012426 235 NAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE---------- 303 (464)
Q Consensus 235 ~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~---------- 303 (464)
||| ++++|++||||||||||||++++ ||||||||||||++|+|++|+|+++|+||+++++.+.+++.-
T Consensus 235 ~lk~liv~g~~rVyeig~~FR~E~~~t-rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~~~~~~~~~~d~~ 313 (521)
T 3bju_A 235 YHKMLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQ 313 (521)
T ss_dssp HHHHHHHTTCCEEEEEEEEECCSCCBT-TBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSSSEEEECTTCTTSC
T ss_pred HHHHHHhcCcCceEEEEcceeCCCCCC-ccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCceEEecccccccc
Confidence 997 67899999999999999999985 999999999999999999999999999999999999876531
Q ss_pred --cccccccccccchHHHHhhhhCCCCC---CCCHHHHHH----HHHhcCCCcccCCCccccccHHHHHHhhhhcccCCC
Q 012426 304 --DMDFFNTWIEKGIIDRLSTVAERDFV---QLSYTDAIE----LLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCP 374 (464)
Q Consensus 304 --~i~~~~~~~~~~~~~~l~~~~~~~~~---~it~~ea~~----~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p 374 (464)
++++..+|.+.++.++++...+.+++ .++.+++.+ +.++.|..+..+.+||..++.++|+++.+.+ . +|
T Consensus 314 ~~~~d~~~pf~rit~~eai~~~~g~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~~ve~~l-~-~P 391 (521)
T 3bju_A 314 AYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTC-I-NP 391 (521)
T ss_dssp CEEEECCSSCEEEEHHHHHHHHHTSCCCCGGGTTSHHHHHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHTGGGC-C-SC
T ss_pred cceeccCCCcccccHHHHHHHHhCCCCCccccCCcHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhc-C-Cc
Confidence 34455678888888888888887764 355544443 3344566555566788899999999976654 4 79
Q ss_pred eeeeeCCCCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHc------CCCccc--hHHHHHHhh
Q 012426 375 VIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDS--YWWYLDLRH 446 (464)
Q Consensus 375 ~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~------g~~~~~--~~~yl~~~~ 446 (464)
+||+|||.+++||||++++|+++++|||||++|. ||+|||+|++||.+|++||+++ |.+++. ++|||+|++
T Consensus 392 ~fI~dyP~~~spla~~~~~dp~~~~rfdL~i~G~-Ei~ng~~el~Dp~~qr~rf~~q~~~~~~g~~e~~~~d~~yl~al~ 470 (521)
T 3bju_A 392 TFICDHPQIMSPLAKWHRSKEGLTERFELFVMKK-EICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALE 470 (521)
T ss_dssp EEEECCBGGGCTTBCBCSSSTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHHTCTTSCCCCHHHHHHHT
T ss_pred EEEECCccccCcccccCCCCCCeeeeEEEEEcce-eeecChhhhCCHHHHHHHHHHHHHHHhcCCChhhcchHHHHHHHh
Confidence 9999999999999999888999999999999995 9999999999999999999764 777765 699999999
Q ss_pred hhh--------h---HhhhhcCCCCCCCC
Q 012426 447 YGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 447 ~G~--------g---L~mll~~~~~I~~~ 464 (464)
||| | |||++||.+||||+
T Consensus 471 yG~PP~gG~GlGiDRLvMlltg~~~IRdV 499 (521)
T 3bju_A 471 YGLPPTAGWGMGIDRVAMFLTDSNNIKEV 499 (521)
T ss_dssp TTCCSEEEEEEEHHHHHHHHTTCSSGGGS
T ss_pred cCCCCceeEEEcHHHHHHHHhCCCcHHhE
Confidence 998 2 99999999999986
|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-90 Score=728.35 Aligned_cols=419 Identities=18% Similarity=0.233 Sum_probs=337.2
Q ss_pred cccccceecccccCCCCCCCC----CCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc---cchhhhhcC
Q 012426 6 GEFRKKLKIVDVKGGPNEGLD----RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSG 78 (464)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~~~~----~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~---~~~~~~~~~ 78 (464)
++|.++++++++.+.+.+... ..|++|+|+|||+++|.+||++|++|||++| .||||++++. ..|+.++.
T Consensus 59 ~~~~~t~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~~R~~Gk~~Fi~LrD~sg--~iQvv~~~~~~~~~~~~~~~~- 135 (529)
T 4ex5_A 59 NDFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMGKASFATVQDGSG--QIQFFVTPADVGAETYDAFKK- 135 (529)
T ss_dssp CCCCCCCCHHHHHHHTTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEECSSC--EEEEEECHHHHCHHHHHHHHT-
T ss_pred CCCcCceEHHHHHHHhhccCccccccCCcEEEEEEEEEeeecCCCeEEEEEEeCCe--eEEEEEECCcCCHHHHHHHhc-
Confidence 578999999999987653111 1278999999999999999999999999997 5999998753 23666788
Q ss_pred CCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCccccc---hhhhhhcceecCC-CccchhhhhHHHHH
Q 012426 79 LITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRNAL 154 (464)
Q Consensus 79 ~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~~~---~~~~r~~r~l~~R-~~~~~~~~~~rs~i 154 (464)
|+.||+|.|+|+|.++++++ +||.+++|+|||+|. +|+|.+.++ .+.++++||||+| ++.++++|++||+|
T Consensus 136 -l~~gd~V~V~G~v~~t~~ge--lel~~~~i~vLs~a~--~plP~k~~~l~d~e~r~r~RyLdLr~~~~~~~~fr~Rs~i 210 (529)
T 4ex5_A 136 -WDLGDIVAARGVLFRTNKGE--LSVKCTQLRLLAKAL--RPLPDKFHGLADQETRYRQRYVDLIVTPETRTTFRARTKA 210 (529)
T ss_dssp -CCTTCEEEEEEEEEECTTSC--EEEEEEEEEEEECCS--SCCCC------CTTHHHHTHHHHHHHCHHHHHHHHHHHHH
T ss_pred -CCCCCEEEEEEEEEEcCCCc--EEEEEEEEEEEecCC--CCCCccccCCcChhhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 99999999999999998754 999999999999997 555555443 4677799999997 78999999999999
Q ss_pred HHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhH
Q 012426 155 AYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL 234 (464)
Q Consensus 155 ~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql 234 (464)
++++|+||.++||+||+||+|+++++++++++|. |++ ++|+.++||+|||||
T Consensus 211 ~~~iR~ff~~~gFlEVeTPiL~~~~gGA~a~pF~-t~~---------------------------n~~~~~~yL~~SpqL 262 (529)
T 4ex5_A 211 IASIRKFMGDADFMEVETPMLHPIPGGAAAKPFV-THH---------------------------NALDMEMFLRIAPEL 262 (529)
T ss_dssp HHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCE-EEE---------------------------TTTTEEEEECSCSHH
T ss_pred HHHHHHHHHHCCCEEEeCCeeeccCCCCcccccc-ccc---------------------------ccCCcceecccCHHH
Confidence 9999999999999999999999887777789994 443 468999999999999
Q ss_pred HHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcc-----ccccc
Q 012426 235 NAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE-----DMDFF 308 (464)
Q Consensus 235 ~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~-----~i~~~ 308 (464)
||| ++++|++||||||||||||+++ .||||||||||||++|+|++|+|+++|+||+++++.+.+++.- .+++.
T Consensus 263 ylk~L~v~G~~rVyeIg~~FR~E~~~-~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~~~~~~~~~id~~ 341 (529)
T 4ex5_A 263 YLKRLIVGGFERVFEINRNFRNEGVS-PRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTATIQYQGRELDLA 341 (529)
T ss_dssp HHHHHHHTTCSEEEEEEEEECCSCCB-TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSEEEETTEEEETT
T ss_pred HHHHHHhcCCCcEEEeehheecCCCC-CCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCcCceecCceeeccC
Confidence 996 7899999999999999999997 7999999999999999999999999999999999999886531 23333
Q ss_pred ccccccchHHHHhhhhC-CCCCC-CCHHHHHHHHHhcCCCccc----CCCccccccHHHHHHhhhhcccCCCeeeeeCCC
Q 012426 309 NTWIEKGIIDRLSTVAE-RDFVQ-LSYTDAIELLIKAKKKFEF----LVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPK 382 (464)
Q Consensus 309 ~~~~~~~~~~~l~~~~~-~~~~~-it~~ea~~~l~~~~~~~~~----~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~ 382 (464)
.+|.+.++.++++.+.+ .++.. .+.+++.+++++.|++++. ...+|..++..++. ++++.+. +||||+|||.
T Consensus 342 ~pf~Rity~eAi~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~g~l~~e~~~~-~vE~~l~-~P~FI~dyP~ 419 (529)
T 4ex5_A 342 QPFHRLTITQAIQKYAPSYTDGQLSDDAFLRSELKRLGVDVTQPAFLNAGIGALQLALFEE-TAEAQLW-EPTFIIDYPI 419 (529)
T ss_dssp SCCEEEEHHHHHHHHCTTSCHHHHTCHHHHHHHHHHTTCCTTSGGGTTCCHHHHHHHHHHH-HTGGGCC-SCEEEEEEEG
T ss_pred CCceEEEHHHHHHHHhCCCChhhcCCHHHHHHHHHHcCCCCCCcccCCCCHHHHHHHHHHH-HhccccC-CCEEEECCch
Confidence 34444444444443333 11111 1233344444445555433 22344444444444 4666666 7999999999
Q ss_pred CCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHH------cCCCccc--hHHHHHHhhhhh-----
Q 012426 383 EIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE------LKLNRDS--YWWYLDLRHYGS----- 449 (464)
Q Consensus 383 ~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~------~g~~~~~--~~~yl~~~~~G~----- 449 (464)
+++|||+++++|+++++|||||++|+ ||||||+|++||++|++||.+ .|.++.. .+|||+|++|||
T Consensus 420 ~~splak~~~~~p~~~~rFeL~i~G~-EianG~~el~Dp~~q~~rf~~q~~~~~~gd~ea~~~De~yl~aleyG~PP~gG 498 (529)
T 4ex5_A 420 EVSPLARESDTVAGITERFELFITGR-EIANGFSELNDPEDQAARFKKQVEQKDAGDEEAMFFDADYIRALEYGMPPTGG 498 (529)
T ss_dssp GGCTTBCBCSSSTTEEEEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCCEEE
T ss_pred hhCCCcccCCCCCCceEEEEEEECCE-EEecchhccCCHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHcCCCCCcE
Confidence 99999998888999999999999996 999999999999999999864 2434333 289999999998
Q ss_pred ---h---HhhhhcCCCCCCCC
Q 012426 450 ---G---LVFILIKVTNFLNC 464 (464)
Q Consensus 450 ---g---L~mll~~~~~I~~~ 464 (464)
| |||++||.+||||+
T Consensus 499 ~GlGiDRLvMlltg~~~IRdV 519 (529)
T 4ex5_A 499 CGIGIDRLVMLLTDSPTIRDV 519 (529)
T ss_dssp EEEEHHHHHHHHHTCSSGGGG
T ss_pred EEEeHHHHHHHHcCCCcHHHe
Confidence 2 99999999999986
|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-90 Score=715.90 Aligned_cols=402 Identities=35% Similarity=0.583 Sum_probs=364.3
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc---cchhhhhcCCCCCCcEE
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASI 86 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V 86 (464)
++++|++|... ..|++|+|+|||+++|.+||++|++|||++|. ||||++++. ..|+.++. |+.||+|
T Consensus 3 ~~~~~~~l~~~------~~~~~V~v~G~v~~~R~~g~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~~~~--l~~~~~v 72 (434)
T 1x54_A 3 EKVYCQEVKPE------LDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGI--VQAVVAKNVVGEETFEKAKK--LGRESSV 72 (434)
T ss_dssp CCCCGGGCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEECHHHHCHHHHHHHHT--CCTTCEE
T ss_pred eEEEHHHhhHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCEE--EEEEEECCcCCHHHHHHHhc--CCCCCEE
Confidence 57889999863 67999999999999999999999999999985 999997542 33666777 9999999
Q ss_pred EEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCC--CccccchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhh
Q 012426 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI--QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 164 (464)
Q Consensus 87 ~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~--~~~~~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~ 164 (464)
.|+|+|.+++++.+++||++++++|||+| .++|+ +.+.++.++++++||||+|++.+++++++||++++++|+||.+
T Consensus 73 ~v~G~v~~~~~~~~~~el~~~~~~vl~~~-~~~P~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~ 151 (434)
T 1x54_A 73 IVEGIVKADERAPGGAEVHVEKLEVIQAV-SEFPIPENPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLK 151 (434)
T ss_dssp EEEEEEEECTTSGGGEEEEEEEEEEEECC-SCCSSCSSGGGSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCCccEEEEEeEEEEeecC-CCCCCcccccCCCHHHhhhceeeeecCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998878899999999999999 67998 7777889999999999999999999999999999999999999
Q ss_pred CCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHHHHhhccC
Q 012426 165 NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALS 244 (464)
Q Consensus 165 ~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~ 244 (464)
+||+||+||+|+++++|+++++|.+ +|+++++||+||||+|+|++++|++
T Consensus 152 ~gF~eVeTP~l~~~~~e~~~~~f~~------------------------------~~~~~~~~Lr~Spel~~~~~~~g~~ 201 (434)
T 1x54_A 152 DGWHEVFPPILVTGAVEGGATLFKL------------------------------KYFDKYAYLSQSAQLYLEAAIFGLE 201 (434)
T ss_dssp TTCEECCCCSEESCCSSCGGGCCEE------------------------------EETTEEEEECSCSHHHHHHHHHHHS
T ss_pred CCCEEEeCcEEEeecCCCCceeEEE------------------------------eecCCcEEeccChHHHHHHHhcCcc
Confidence 9999999999999999999999975 4788999999999999988888999
Q ss_pred ceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhh
Q 012426 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA 324 (464)
Q Consensus 245 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 324 (464)
|||+||||||||++++.||+|||||||+|++|.|++|+|+++|+|++++++.+.++|..++++.+... +.++ .+
T Consensus 202 rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~l~~~v~~~~~~~i~~~~~~~-----~~~~-~~ 275 (434)
T 1x54_A 202 KVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDL-----TTLK-NT 275 (434)
T ss_dssp EEEEEEEEECCCCCCCSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTCSCC-----HHHH-TC
T ss_pred ceEEEecceecCCCCCcccccEEEEeeEEEcCCCHHHHHHHHHHHHHHHHHHHhhhchhhhhhcCccc-----cccc-cc
Confidence 99999999999999988999999999999999999999999999999999999988888887776532 1222 24
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccC-CCCCceeeEEE
Q 012426 325 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDM 403 (464)
Q Consensus 325 ~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~-~d~~~~~~fdl 403 (464)
+.||+|+||.||++++++.|.+ ..||.+++.++|++|.+.+ . +|+||+|||..++|||++.+ +|+++++||||
T Consensus 276 ~~pf~rity~ea~~~~~~~g~~----~~~~~dl~~~~e~~l~~~~-~-~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl 349 (434)
T 1x54_A 276 EPPFPRISYDEAIDILQSKGVN----VEWGDDLGADEERVLTEEF-D-RPFFVYGYPKHIKAFYMKEDPNDPRKVLASDM 349 (434)
T ss_dssp CSSCCEEEHHHHHHHHHHTTCC----CCTTCCCCHHHHHHHHTTC-S-SCEEEEEEEGGGSCTTBCBCSSCTTEEEEEEE
T ss_pred CCCCcEEEHHHHHHHHHhcCCC----cccCCccChHHHHHHHHHh-C-CcEEEEcCChhhCcccCCcCCCCCCeEEEEEE
Confidence 6799999999999999987753 4688899999999988755 3 79999999999999987554 56789999999
Q ss_pred eeC-CccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 404 LVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 404 ~~~-GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
|++ |+|||+|||+|+|||++|++||+++|++++.++|||+|++||+ | |+|+++|.+||||+
T Consensus 350 ~~~~G~gEi~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdv 422 (434)
T 1x54_A 350 LAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLKLDHIRWA 422 (434)
T ss_dssp EETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTTTSSCCCEEEEEEEHHHHHHHHTTCSSGGGG
T ss_pred EECCCceEEecCeEeeCCHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhE
Confidence 999 9999999999999999999999999999999999999999988 3 99999999999985
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-90 Score=714.54 Aligned_cols=389 Identities=25% Similarity=0.396 Sum_probs=303.5
Q ss_pred ceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCC-CCcEEEEE
Q 012426 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT-TGASIWIQ 89 (464)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~-~g~~V~V~ 89 (464)
+++|++|. . ..|++|+|+|||+++|.+||++|++|||++|. ||||+++ +. |+ .||+|.|+
T Consensus 2 ~~~~~~l~-~------~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~--iQ~v~~~--------~~--l~~~~~~v~v~ 62 (422)
T 1n9w_A 2 RVLVRDLK-A------HVGQEVELLGFLHWRRDLGRIQFLLLRDRSGV--VQVVTGG--------LK--LPLPESALRVR 62 (422)
T ss_dssp BCCGGGGG-G------CTTSEEEEEEEEEEEEECSSEEEEEEEETTEE--EEEEEES--------CC--CCCTTCEEEEE
T ss_pred eEEHHHHH-h------cCCCEEEEEEEEEEEecCCCeEEEEEEECCEE--EEEEEEc--------cc--cCCCCCEEEEE
Confidence 46788887 3 67899999999999999999999999999985 9999985 34 99 99999999
Q ss_pred EEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCccc----cchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhC
Q 012426 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR----VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 165 (464)
Q Consensus 90 G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~----~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~ 165 (464)
|+|.+++++.+++||++++++|||+|..++|++.+. ++.++++++||||+|++.+++++++||++++++|+||.++
T Consensus 63 G~v~~~~~~~~~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~~ 142 (422)
T 1n9w_A 63 GLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQ 142 (422)
T ss_dssp EEEEECTTSTTSEEEEEEEEEEEECCCSCCC-----------------CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCCCccEEEEEeEEEEeccCCcCCCCCccccccCCCHHHHhhhhHHhhcCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999988788999999999999997779988766 7889999999999999999999999999999999999999
Q ss_pred CcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHHHHhhccCc
Q 012426 166 GFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSN 245 (464)
Q Consensus 166 gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lqll~~g~~r 245 (464)
||+||+||+|+++++|+++++|.+ +|+++++||+||||+|+|++++|++|
T Consensus 143 gF~EV~TPil~~~~~e~~~~~f~~------------------------------~~~g~~~~L~~Spel~~~~l~~g~~r 192 (422)
T 1n9w_A 143 DFTEIFTPKVVRAGAEGGSGLFGV------------------------------DYFEKRAYLAQSPQLYKQIMVGVFER 192 (422)
T ss_dssp TCEECCCC----------------------------------------------------------CHHHHHHHHHHHSE
T ss_pred CCEEEECCEEEEeCCCCCceeEEE------------------------------eeCCCcEEeeeCHHHHHHHHhhCCCc
Confidence 999999999999999999999965 47889999999999999876688999
Q ss_pred eEEEccccccCCCCCccccccchhccceeccC-CHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhh
Q 012426 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA 324 (464)
Q Consensus 246 VfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 324 (464)
||+||||||||++++.||+|||||||+|++|+ |++|+|+++|+|++++++.+.+++..++++.+...+ ..
T Consensus 193 vf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~d~~dlm~l~e~ll~~l~~~~~~~~~~~i~~~~~~~~---------~~ 263 (422)
T 1n9w_A 193 VYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWP---------SF 263 (422)
T ss_dssp EEEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCCC---------CC
T ss_pred eeEEeCceECCCCCCCcccceeEEeeeeeeCCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcCcccc---------cc
Confidence 99999999999999889999999999999999 999999999999999999999888777766543211 11
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcc---cCCCeeeeeCCCCCcccccccCCCCCceeeE
Q 012426 325 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAF---GGCPVIVSDYPKEIKAFYMRQNDDGRTVAAM 401 (464)
Q Consensus 325 ~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~---~~~p~fI~~yP~~~~pfy~~~~~d~~~~~~f 401 (464)
..||+|+||.||++++++.| ...||.+++.++|++|.+.+. ..+|+||+|||..++|||+++++| ++++||
T Consensus 264 ~~pf~rity~eA~~~~~~~~-----~~~~~~dl~~~~e~~l~~~~~~~~~~~p~fv~d~P~~~~pf~~~~~~d-~~~~~f 337 (422)
T 1n9w_A 264 PQDIPRLTHAEAKRILKEEL-----GYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEED-GTTRSF 337 (422)
T ss_dssp SSSCCEEEHHHHHHHHHHTS-----CCCCCSSCCHHHHHHHHHHHHHHTCCSEEEEECCBGGGSCTTBCBCTT-SBBSEE
T ss_pred CCCcceeEHHHHHHHHHhcC-----CcccccccCcHHHHHHHHHHHhhhCCceEEEECCChhhCcCcCCCCCC-CEEEEE
Confidence 15899999999999998776 246888999999998876432 226999999999999999998877 899999
Q ss_pred EEeeCCccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 402 DMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 402 dl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
|||++|+ ||+|||+|+||+++|++||++.|++++.++|||+|++||+ | |||+++|.+||||+
T Consensus 338 DL~~~G~-Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~a~~yG~PPhgG~glGiDRLvm~l~g~~~Irdv 410 (422)
T 1n9w_A 338 DLLFRGL-EITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYA 410 (422)
T ss_dssp EEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGBCCCSEEEEEEEHHHHHHHHTTCSSGGGG
T ss_pred EEEECCE-EEEeCEeecCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHhCCCcHHhE
Confidence 9999998 9999999999999999999999999999999999999998 2 99999999999985
|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-89 Score=717.35 Aligned_cols=419 Identities=17% Similarity=0.269 Sum_probs=339.9
Q ss_pred cccccceecccccCCCCCCCC----CCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc---cchh-hhhc
Q 012426 6 GEFRKKLKIVDVKGGPNEGLD----RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYD-QVKS 77 (464)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~~~~----~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~---~~~~-~~~~ 77 (464)
++|.++++|+++.+.+.+... ..|++|+|+|||+++|.+||++|++|||++| .||||++++. ..|+ .++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg--~iQvv~~~~~~~~~~~~~~~~~ 114 (504)
T 1e1o_A 37 NDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGG--RIQLYVARDSLPEGVYNDQFKK 114 (504)
T ss_dssp CCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEETTTSSTTHHHHTGGG
T ss_pred CCCcCceEHHHHHHHhhccCccccccCCCEEEEEEEEEEEecCCCcEEEEEEECCe--eEEEEEECCcCCHHHHHHHHhc
Confidence 578999999999987543110 1278999999999999999999999999997 5999998763 3366 5777
Q ss_pred CCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCccccc---hhhhhhcceecCC-CccchhhhhHHHH
Q 012426 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRNA 153 (464)
Q Consensus 78 ~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~~~---~~~~r~~r~l~~R-~~~~~~~~~~rs~ 153 (464)
|+.||+|.|+|+|.+++++ ++||+|++++||++|..++| .+.++ .+.+.++||||+| ++.++++|++||+
T Consensus 115 --l~~g~~V~V~G~v~~~~~g--e~ei~~~~i~vl~~a~~plP--~k~~~~~~~e~r~r~RyLdL~~~~~~~~~~r~Rs~ 188 (504)
T 1e1o_A 115 --WDLGDIIGARGTLFKTQTG--ELSIHCTELRLLTKALRPLP--DKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSK 188 (504)
T ss_dssp --CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCSSCCC--C-------TTHHHHTHHHHHHHCHHHHHHHHHHHH
T ss_pred --CCCCCEEEEEEEEEecCCc--eEEEEEEEEEEecccCCCCC--ccccCCcChhhhhhccchhhhcCHHHHHHHHHHHH
Confidence 9999999999999999875 49999999999999974444 45444 5677799999996 8899999999999
Q ss_pred HHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchh
Q 012426 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQ 233 (464)
Q Consensus 154 i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spq 233 (464)
|++++|+||.++||+||+||+|+++++++++++|.+ ++ ++|+.++||+||||
T Consensus 189 i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t-~~---------------------------~~~~~~~yL~~Spq 240 (504)
T 1e1o_A 189 ILAAIRQFMVARGFMEVETPMMQVIPGGASARPFIT-HH---------------------------NALDLDMYLRIAPE 240 (504)
T ss_dssp HHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEE-EE---------------------------TTTTEEEEECSCSH
T ss_pred HHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEe-cc---------------------------CCCCceEEeccCHH
Confidence 999999999999999999999998877777899954 33 46899999999999
Q ss_pred HHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcc-----cccc
Q 012426 234 LNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE-----DMDF 307 (464)
Q Consensus 234 l~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~-----~i~~ 307 (464)
|||| ++++|++||||||||||||+++ .||+|||||||||++|+|++|+|+++|+||+++++.+++++.- .+++
T Consensus 241 Lylk~L~v~G~~rVyeIg~~FR~E~~~-~rH~pEFt~lE~e~af~d~~dlm~l~E~li~~~~~~v~~~~~i~~~~~~i~~ 319 (504)
T 1e1o_A 241 LYLKRLVVGGFERVFEINRNFRNEGIS-VRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDF 319 (504)
T ss_dssp HHHHHHHHHTCCEEEEEEEEECCCCCC-C-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSEEEETTEEEET
T ss_pred HHHHHHhhcCCCcEEEEcccccCCCCC-ccccCceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCceeeeCCEeecc
Confidence 9997 5789999999999999999997 5999999999999999999999999999999999999987631 1233
Q ss_pred cccccccchHHHHhhhhC-CCCCCC-CHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCc
Q 012426 308 FNTWIEKGIIDRLSTVAE-RDFVQL-SYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 385 (464)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~-~~~~~i-t~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~ 385 (464)
..+|.+.++.++++.+.+ .++..+ +.+++.+++++.|.+++.+..+|..++..+|.+ +++.+. +|+||+|||..++
T Consensus 320 ~~pf~rity~eAi~~~~~d~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~-ve~~~~-~p~fV~dyP~~~~ 397 (504)
T 1e1o_A 320 GKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEV-AEAHLI-QPTFITEYPAEVS 397 (504)
T ss_dssp TSCCEEEEHHHHHHHHSTTCCGGGGGSHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHH-TGGGCC-SCEEEECCBGGGC
T ss_pred CCCceEEeHHHHHHHHcCCCCccccCCHHHHHHHHHHcCCCCCCCcCHhHHHHHHHHHH-hhccCC-CeEEEECCCcccC
Confidence 334555555555554444 333333 344444444555554433334555666667766 455555 7999999999999
Q ss_pred ccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHc-----CCCccch---HHHHHHhhhhh--------
Q 012426 386 AFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-----KLNRDSY---WWYLDLRHYGS-------- 449 (464)
Q Consensus 386 pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~-----g~~~~~~---~~yl~~~~~G~-------- 449 (464)
||||++++|+++++|||||++|+ ||+|||+|+||+++|++||++. ..+++.+ +|||+|++||+
T Consensus 398 pf~~~~~~dp~~~~~fDL~i~G~-Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhgG~gl 476 (504)
T 1e1o_A 398 PLARRNDVNPEITDRFEFFIGGR-EIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGI 476 (504)
T ss_dssp TTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHHHHHHHHCCSEEEEEE
T ss_pred cCcCCCCCCCCceEEEEEEECCe-EEccceeeeCCHHHHHHHHHHHHHHhhcCChhhhhchHHHHHHHhcCCCCceeEEE
Confidence 99999888899999999999998 9999999999999999999763 1244443 99999999998
Q ss_pred h---HhhhhcCCCCCCCC
Q 012426 450 G---LVFILIKVTNFLNC 464 (464)
Q Consensus 450 g---L~mll~~~~~I~~~ 464 (464)
| |||++||.+||||+
T Consensus 477 GiDRLvmlltg~~~IRdV 494 (504)
T 1e1o_A 477 GIDRMIMLFTNSHTIRDV 494 (504)
T ss_dssp EHHHHHHHHHTCSSGGGT
T ss_pred cHHHHHHHHhCCCcHHhE
Confidence 2 99999999999986
|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-88 Score=714.57 Aligned_cols=419 Identities=19% Similarity=0.276 Sum_probs=358.1
Q ss_pred cccccceecccccCCCCCCCC----CCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc---cchhhhhcC
Q 012426 6 GEFRKKLKIVDVKGGPNEGLD----RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSG 78 (464)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~~~~----~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~---~~~~~~~~~ 78 (464)
++|.++++|+++.+.+.+... ..|++|+|+|||+++|.+||++|++|||++| .||||++++. ..|+.++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg--~iQvv~~~~~~~~~~~~~~~~- 105 (493)
T 3a74_A 29 KRFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMGKAGFAHIQDVTG--QIQIYVRQDDVGEQQYELFKI- 105 (493)
T ss_dssp CCCCCSCCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEEHHHHHHHHHHHHHH-
T ss_pred CCCcCceehHHHHHhhccccchhhccCCCEEEEEEEEEEEecCCCcEEEEEEECCE--eEEEEEECCcCCHHHHHHHhc-
Confidence 478899999999986543110 1278999999999999999999999999997 5999998653 23566778
Q ss_pred CCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCCCccccc---hhhhhhcceecCC-CccchhhhhHHHHH
Q 012426 79 LITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRNAL 154 (464)
Q Consensus 79 ~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~~~~~~---~~~~r~~r~l~~R-~~~~~~~~~~rs~i 154 (464)
|+.||+|.|+|+|.+++++ ++||+|++++||++|.. |+|.+.++ .+.+.++||||+| ++.++++|++||+|
T Consensus 106 -l~~g~~v~V~G~v~~~~~g--e~ei~~~~i~vl~~~~~--plP~k~~~~~~~e~r~r~RyldL~~~~~~~~~~r~Rs~i 180 (493)
T 3a74_A 106 -SDLGDIVGVRGTMFKTKVG--ELSIKVSSYEFLTKALR--PLPEKYHGLKDIEQRYRQRYLDLIMNPESKKTFITRSLI 180 (493)
T ss_dssp -CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCSS--CCCCC-----CHHHHHHTHHHHHHHCTHHHHHHHHHHHH
T ss_pred -CCCCCEEEEEEEEEeCCCC--cEEEEEEEEEEcccccC--CCCccccCCCCHhhhhhcchhhhhcCHHHHHHHHHHHHH
Confidence 9999999999999999875 49999999999999974 44455444 6677799999996 89999999999999
Q ss_pred HHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhH
Q 012426 155 AYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL 234 (464)
Q Consensus 155 ~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql 234 (464)
++++|+||.++||+||+||+|+++++++++++|.+ ++ ++|++++||+|||||
T Consensus 181 ~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~-~~---------------------------~~~~~~~yLr~SpqL 232 (493)
T 3a74_A 181 IQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFIT-HH---------------------------NALDMTLYMRIAIEL 232 (493)
T ss_dssp HHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEE-EE---------------------------TTTTEEEEECSCSHH
T ss_pred HHHHHHHHHhCCeEEEECCeEEecCCCCcccceEe-cc---------------------------cCCCceeEEecCHHH
Confidence 99999999999999999999998887777899954 32 468999999999999
Q ss_pred HHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCc-----cccccc
Q 012426 235 NAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK-----EDMDFF 308 (464)
Q Consensus 235 ~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~-----~~i~~~ 308 (464)
||| ++++|++||||||||||||+++ .||+|||||||+|++|+|++|+|+++|+||+++++.+.+++. ..+++.
T Consensus 233 ylk~l~v~G~~rVyeig~~FR~E~~~-~rH~pEFT~lE~e~af~d~~dlm~l~E~ll~~l~~~v~~~~~i~~~~~~i~~~ 311 (493)
T 3a74_A 233 HLKRLIVGGLEKVYEIGRVFRNEGIS-TRHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTKIQYGEHLVDLT 311 (493)
T ss_dssp HHHHHHHTTCCEEEEEEEEECCCCCB-TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSEEEETTEEEECC
T ss_pred HHHHHhhcccCceEEECccccCCCCC-cccCCceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHhCCceEeeCCEeeccC
Confidence 997 5789999999999999999997 599999999999999999999999999999999999988763 224455
Q ss_pred ccccccchHHHHhhhhCCCC-CCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeeeeCCCCCccc
Q 012426 309 NTWIEKGIIDRLSTVAERDF-VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAF 387 (464)
Q Consensus 309 ~~~~~~~~~~~l~~~~~~~~-~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pf 387 (464)
.+|.+.++.++++.+.+.++ ..++.+++.+++++.|.+++....||..++..+|.++ ++.+. +|+||+|||..++||
T Consensus 312 ~pf~rity~eai~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v-e~~~~-~p~fv~dyP~~~~pf 389 (493)
T 3a74_A 312 PEWRRLHMVDAIKEYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFGHIVNEFFEQKV-EDKLI-QPTFIYGHPVEISPL 389 (493)
T ss_dssp SSCEEEEHHHHHHHHTCCCTTSCCCHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHT-GGGCC-SCEEEECCBGGGCTT
T ss_pred CCcceeeHHHHHHHHhCCCCccccCHHHHHHHHHHcCCCCCCCcChhHHHHHHHHHHh-hcccC-CcEEEECCCcccCCc
Confidence 67888889999988877777 6778888988888888765434456777787788764 44455 799999999999999
Q ss_pred ccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHc-----CCCccch---HHHHHHhhhhh--------h-
Q 012426 388 YMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-----KLNRDSY---WWYLDLRHYGS--------G- 450 (464)
Q Consensus 388 y~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~-----g~~~~~~---~~yl~~~~~G~--------g- 450 (464)
||++++|+++++|||||++|+ ||+|||+|+||+++|++||++. ..+++.+ +|||+|++||+ |
T Consensus 390 ~~~~~~dp~~~~~fDL~i~G~-Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhgG~glGi 468 (493)
T 3a74_A 390 AKKNPDDPRFTDRFELFIVGR-EHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDEDFLEALEYGMPPTGGLGIGV 468 (493)
T ss_dssp BCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCSEEEEEEEH
T ss_pred cCcCCCCCCeEEEEEEEeCCe-EEecCcceeCCHHHHHHHHHHHHHHhhcCCchhhhccHHHHHHHhCCCCCceeEEEcH
Confidence 999888999999999999998 9999999999999999999753 1244443 99999999998 2
Q ss_pred --HhhhhcCCCCCCCC
Q 012426 451 --LVFILIKVTNFLNC 464 (464)
Q Consensus 451 --L~mll~~~~~I~~~ 464 (464)
|||++||.+||||+
T Consensus 469 DRLvmlltg~~~IRdV 484 (493)
T 3a74_A 469 DRLVMLLTNSPSIRDV 484 (493)
T ss_dssp HHHHHHHHTCSSGGGT
T ss_pred HHHHHHHhCCCcHHhE
Confidence 99999999999986
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-87 Score=703.89 Aligned_cols=408 Identities=22% Similarity=0.378 Sum_probs=348.4
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCe-EEEEEEeCcCCcceEEEEeCCc------cchhhhhcCCCCC
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSV-TFIEVNDGSCLSNMQCVMTSDA------EGYDQVKSGLITT 82 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~-~Fi~LrD~sg~~~iQvv~~~~~------~~~~~~~~~~l~~ 82 (464)
++++|++|... ...|++|+|+|||+++|.+|++ +|++|||++| .||||++++. ..++.++. |+.
T Consensus 22 ~~~~~~~l~~~-----~~~g~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g--~iQvv~~~~~~~~~~~~~~~~~~~--l~~ 92 (487)
T 1eov_A 22 KRVKFVDLDEA-----KDSDKEVLFRARVHNTRQQGATLAFLTLRQQAS--LIQGLVKANKEGTISKNMVKWAGS--LNL 92 (487)
T ss_dssp CCCCGGGCCTT-----TTTTCEEEEEEEEEEEEECSSSEEEEEEEETTE--EEEEEEECCSSSSSCHHHHHHHTT--CCT
T ss_pred ceeEHHHhccc-----ccCCCEEEEEEEEEEeeccCCccEEEEEEECCc--cEEEEEeccccccccHHHHHHHhc--CCC
Confidence 45668777652 2679999999999999999997 9999999997 4999998651 12445667 999
Q ss_pred CcEEEEEEEEEeCCC-----CCceEEEEEeeEEEEecCCCCCCCCccc---------------cchhhhhhcceecCCCc
Q 012426 83 GASIWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKR---------------VSREFLRTKAHLRPRTN 142 (464)
Q Consensus 83 g~~V~V~G~v~~~~~-----~~~~~el~~~~i~vls~~~~~~P~~~~~---------------~~~~~~r~~r~l~~R~~ 142 (464)
||+|.|+|+|.+++. +.+++||++++++|||+|..++|++.++ .+.+.++++||||+|++
T Consensus 93 e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a~~~lP~~~~~~~~~~~~~~~~~~~~~~~e~r~~~R~LdLr~~ 172 (487)
T 1eov_A 93 ESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTV 172 (487)
T ss_dssp TCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCCSSCSSCHHHHTSCHHHHHHTTCCCCCHHHHHHTHHHHTTSH
T ss_pred CCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecccccCCcchhhcccccccccccccccCChhhhhhcceeecCCH
Confidence 999999999999984 3467999999999999998778986542 45678889999999999
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 222 (464)
.+++++++||+|++++|+||.++||+||+||+|+++++++++++|.+ +|+
T Consensus 173 ~~~~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~~~ga~~f~~------------------------------~~~ 222 (487)
T 1eov_A 173 TNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEV------------------------------TYF 222 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEE------------------------------EET
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEecCCCCccccee------------------------------ccC
Confidence 99999999999999999999999999999999999999999999976 367
Q ss_pred CcccccccchhHHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccC-CHHHHHHHHHHHHHHHHHHHhhc
Q 012426 223 EKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDN 300 (464)
Q Consensus 223 ~~~~yL~~Spql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-~~~dlm~~~e~li~~i~~~~~~~ 300 (464)
++++||+||||||+| +|++|++|||+||||||||++++.||+|||||||||++|. +++|+|+++|+||+++++.+.+.
T Consensus 223 ~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~~l~~~v~~~ 302 (487)
T 1eov_A 223 KGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKR 302 (487)
T ss_dssp TEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccEEcccChHHHHHHHHhcCCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 899999999999997 5689999999999999999999899999999999999997 59999999999999999999887
Q ss_pred CcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhh---hcccCCCeee
Q 012426 301 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIV 377 (464)
Q Consensus 301 ~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e---~~~~~~p~fI 377 (464)
+..++..+....+.. .+.-....||++++|.||++++++.|.+ ..|+.++..++|+.|++ +.+...|+||
T Consensus 303 ~~~~l~~~~~~~~~~---~~~~~~~~~~~ri~~~ea~~~l~~~g~~----~~~~~d~~~~~e~~l~~~~~~~~~~~~~~v 375 (487)
T 1eov_A 303 FAHEIELVRKQYPVE---EFKLPKDGKMVRLTYKEGIEMLRAAGKE----IGDFEDLSTENEKFLGKLVRDKYDTDFYIL 375 (487)
T ss_dssp CHHHHHHHHHHSCCC---CCCCCTTCCCEEEEHHHHHHHHHHTTCC----CCTTCCCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred chhHHHhhhhhcCCc---ceecccCCCeeEEEHHHHHHHHHHhCCC----CCcccchhhHHHHHHHHHHHHHhCCCCEEE
Confidence 765554332211110 0100112378999999999999988754 35677888899988764 2233367899
Q ss_pred eeCCCCCcccc-cccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHcCCCcc--chHHHHHHhhhhh-----
Q 012426 378 SDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD--SYWWYLDLRHYGS----- 449 (464)
Q Consensus 378 ~~yP~~~~pfy-~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~--~~~~yl~~~~~G~----- 449 (464)
+|||..++||| |++++|+++++|||||++|+ ||+|||+|+||+++|++||++.|++++ .++|||+|++||+
T Consensus 376 ~dyP~~~~pfy~~~~~~dp~~~~~fDL~~~G~-Ei~~G~~rl~d~~~q~~r~~~~g~~~~~~~~~~yl~al~yG~PPhgG 454 (487)
T 1eov_A 376 DKFPLEIRPFYTMPDPANPKYSNSYDFFMRGE-EILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAG 454 (487)
T ss_dssp ECCBGGGSCTTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCCCCEEE
T ss_pred ECCccccChhhcCcCCCCCCeEEEEEEEeCCE-EEEeeEEecCCHHHHHHHHHHcCCChhhhhHHHHHHHHhcCCCCCeE
Confidence 99999999997 55566788999999999995 999999999999999999999999998 8999999999998
Q ss_pred ---h---HhhhhcCCCCCCCC
Q 012426 450 ---G---LVFILIKVTNFLNC 464 (464)
Q Consensus 450 ---g---L~mll~~~~~I~~~ 464 (464)
| |||+++|.+||||+
T Consensus 455 ~glGiDRLvmll~g~~~IRdV 475 (487)
T 1eov_A 455 GGIGLERVVMFYLDLKNIRRA 475 (487)
T ss_dssp EEEEHHHHHHHHTTCSSGGGG
T ss_pred EEEhHHHHHHHHcCCCcHHhe
Confidence 2 99999999999985
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-84 Score=693.75 Aligned_cols=406 Identities=19% Similarity=0.288 Sum_probs=313.4
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEE
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (464)
++++|++|... ..|++|+|+|||+++|.+|+++|++|||++|. ||||++.+...|+.++. |+.||+|.|+
T Consensus 3 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~--l~~e~~V~V~ 72 (580)
T 1l0w_A 3 RTHYAGSLRET------HVGEEVVLEGWVNRRRDLGGLIFLDLRDREGL--VQLVAHPASPAYATAER--VRPEWVVRAK 72 (580)
T ss_dssp CSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTEE--EEEEECTTSTTHHHHTT--CCTTCEEEEE
T ss_pred cEEEHHHhHHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCee--EEEEEeCChhHHHHHhc--CCCCcEEEEE
Confidence 68999999874 67999999999999999999999999999985 99999865434666777 9999999999
Q ss_pred EEEEeCCC-----CCceEEEEEeeEEEEecCCC-CCCCCc------c-ccchhhhhhcceecCCCccchhhhhHHHHHHH
Q 012426 90 GNVVPSQG-----SKQKVELKVNKIVLVGKSDP-SYPIQK------K-RVSREFLRTKAHLRPRTNTFGAVARVRNALAY 156 (464)
Q Consensus 90 G~v~~~~~-----~~~~~el~~~~i~vls~~~~-~~P~~~------~-~~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~ 156 (464)
|+|.+++. +.|++||+|++++|||+|.+ ++|+.. + ..+.+.++++||||+|++.++++|++||+|++
T Consensus 73 G~v~~~~~~~~~~~~ge~Ei~~~~i~vl~~a~~lP~~i~~~~~~~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~Rs~i~~ 152 (580)
T 1l0w_A 73 GLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIK 152 (580)
T ss_dssp EEEEECSSCCTTSTTTTEEEEEEEEEEEECCCCCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcCccCCCccEEEEEeEEEEeccCcCCCCCcchhccccccccCCHHHhhhhhHHHhcCHHHHHHHHHHHHHHH
Confidence 99999842 34669999999999999973 355543 2 23455556999999999999999999999999
Q ss_pred HHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccc-ccccchhHH
Q 012426 157 ATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPA-FLTVSGQLN 235 (464)
Q Consensus 157 ~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-yL~~Spql~ 235 (464)
++|+||.++||+||+||+|+++++||+.+ |.+ +++ .++... ||+||||||
T Consensus 153 ~iR~fl~~~gF~EVeTPiL~~s~~eGAr~-F~v-~~~---------------------------~~~~~~y~L~qSPQl~ 203 (580)
T 1l0w_A 153 AIWDFLDREGFVQVETPFLTKSTPEGARD-FLV-PYR---------------------------HEPGLFYALPQSPQLF 203 (580)
T ss_dssp HHHHHHHHTTCEECCCCSSBCCCSSSSCC-CEE-ECT---------------------------TSTTEEEECCSCSHHH
T ss_pred HHHHHHHhCCcEEEeCCEEecCCCCCCCC-ccc-ccc---------------------------ccCCceeECccCHHHH
Confidence 99999999999999999999999998655 854 322 122223 599999999
Q ss_pred HH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCccccccccccccc
Q 012426 236 AE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEK 314 (464)
Q Consensus 236 lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~ 314 (464)
|| +|++|++||||||||||||++++.|| ||||||||||+|+|++|+|+++|+||+++++.+.+. ++..+|.+.
T Consensus 204 kq~Lmv~G~~rvfqI~~~FR~E~~~~~r~-pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v~~~-----~~~~pf~ri 277 (580)
T 1l0w_A 204 KQMLMVAGLDRYFQIARCFRDEDLRADRQ-PDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGV-----ELPLPFPRL 277 (580)
T ss_dssp HHHHHHTTCSEEEEEEEEECCCCCCSSCC-SEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHTCC-----CCCSSCCEE
T ss_pred HHHHHHhccCCeEEEeceeeCCCCCCCcC-CCccceeeeecCCCHHHHHHHHHHHHHHHHHHHhCC-----ccCCCccEE
Confidence 98 58999999999999999999986555 599999999999999999999999999999998642 111233333
Q ss_pred chHHHHhhhhCCCCC---------------------------------------CCCHHHHHHHHHhcCCCcccCCCccc
Q 012426 315 GIIDRLSTVAERDFV---------------------------------------QLSYTDAIELLIKAKKKFEFLVKWGC 355 (464)
Q Consensus 315 ~~~~~l~~~~~~~~~---------------------------------------~it~~ea~~~l~~~~~~~~~~~~~~~ 355 (464)
++.++++.+ |.+-| +-+.++..+.+++.|.+--..+.|+.
T Consensus 278 ty~eA~~~~-g~dkpd~r~~~~~~d~~~~~~~~~~~~~~~~~~v~~i~~~~~~~r~~~~~l~~~~~~~g~~~~~~~~~~~ 356 (580)
T 1l0w_A 278 SYEEAMERY-GSDKPDLRFGLELKEVGPLFRQSGFRVFQEAESVKALALPKALSRKEVAELEEVAKRHKAQGLAWARVEE 356 (580)
T ss_dssp EHHHHHHHH-SSSSCCCSSCCCCEECGGGGSSSCCTHHHHSSEEEEEEESSCCCHHHHHHHHHHHHHTSCSCCEEEEEET
T ss_pred EHHHHHHHh-cCCCcccccccchhhhhhhhhccccccccccceeEEEeccCccCHHHHHHHHHHHHHcCCCcceEEEecC
Confidence 444443322 11000 00112222222222211000011222
Q ss_pred c-ccHHHHHH----------------------------------------------hhhhcccCCCeeeeeCCCC-----
Q 012426 356 D-LQSEHERY----------------------------------------------LTEEAFGGCPVIVSDYPKE----- 383 (464)
Q Consensus 356 ~-l~~~~e~~----------------------------------------------l~e~~~~~~p~fI~~yP~~----- 383 (464)
+ +...++++ |+++ .. +|+||||||..
T Consensus 357 ~~~~~~~~k~l~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~Lg~lr~~l~~~~~lve~-~~-~p~fV~dfP~~~~~~~ 434 (580)
T 1l0w_A 357 GGFSGGVAKFLEPVREALLQATEARPGDTLLFVAGPRKVAATALGAVRLRAADLLGLKRE-GF-RFLWVVDFPLLEWDEE 434 (580)
T ss_dssp TEEESTTHHHHGGGHHHHHHHHCCCTTCEEEEEEESHHHHHHHHHHHHHHHHHHTTCCCC-SC-CEEEEECCBSBCCCTT
T ss_pred ccccchhhhhhhHHHHHHHHHhCCCcCceEEEecCccchhhhhHHHHHHHHHHHhccccc-cc-CeEEEEcCCccccccc
Confidence 2 22222222 2222 23 79999999996
Q ss_pred -------CcccccccCC-------CC-Cc-eeeEEEeeCCccccccCccccccHHHHHHHHHHcCCCccc----hHHHHH
Q 012426 384 -------IKAFYMRQND-------DG-RT-VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS----YWWYLD 443 (464)
Q Consensus 384 -------~~pfy~~~~~-------d~-~~-~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~----~~~yl~ 443 (464)
.+||||++++ || ++ +++|||+++|+ ||+|||+|+||+++|++||++.|++++. ++|||+
T Consensus 435 ~~~~~a~~~PFt~~~~~dl~~l~~dp~~~~a~~fDL~i~G~-Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~~L~ 513 (580)
T 1l0w_A 435 EEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVLNGV-EVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLE 513 (580)
T ss_dssp TSCCCBSSCTTBCBCSTTTTHHHHCGGGCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHH
T ss_pred ccccccccCCccCCCchhhhhhcCCccceeeeEEEEEeCCE-EEEeCeeecCCHHHHHHHHHHcCCChhHHHhHHHHHHH
Confidence 8999998876 45 36 89999999998 9999999999999999999999998876 889999
Q ss_pred Hhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 444 LRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 444 ~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
|++||+ | |||+++|.+||||+
T Consensus 514 al~yG~PPhgG~glGlDRLvMll~g~~sIRdV 545 (580)
T 1l0w_A 514 ALEYGAPPHGGIAWGLDRLLALMTGSPSIREV 545 (580)
T ss_dssp HTTBTCCCEEEEEEEHHHHHHHHHTCSSGGGG
T ss_pred HHhcCCCCCceEEEcHHHHHHHHcCCCcHHeE
Confidence 999998 2 99999999999985
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-84 Score=690.14 Aligned_cols=407 Identities=19% Similarity=0.268 Sum_probs=323.0
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc-cchhhhhcCCCCCCcEEEE
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWI 88 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~-~~~~~~~~~~l~~g~~V~V 88 (464)
++++|.+|... ..|++|+|+|||+++|.+|+++|++|||++|. ||||++.+. ..|+.++. |+.||+|.|
T Consensus 2 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~~--l~~e~~V~V 71 (585)
T 1c0a_A 2 RTEYCGQLRLS------HVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI--VQVFFDPDRADALKLASE--LRNEFCIQV 71 (585)
T ss_dssp CSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTEE--EEEEECGGGHHHHHHHTT--CCTTCEEEE
T ss_pred ceeEHHHHHHH------hCCCEEEEEEEEEEEecCCCcEEEEEEECCee--EEEEEeCCchHHHHHHhc--CCCCCEEEE
Confidence 57889999874 67999999999999999999999999999985 999998653 23556777 999999999
Q ss_pred EEEEEeCCC-------CCceEEEEEeeEEEEecCCCCCCCCcc-ccchhhhhhcceecCCCccchhhhhHHHHHHHHHHH
Q 012426 89 QGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKK-RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHK 160 (464)
Q Consensus 89 ~G~v~~~~~-------~~~~~el~~~~i~vls~~~~~~P~~~~-~~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ 160 (464)
+|+|.+++. +.|++||+|++++|||+|. ++|++.. ..+.+.++++||||+|++.++++|++||+|++++|+
T Consensus 72 ~G~v~~~~~~~~n~~~~~geiEl~~~~i~vl~~a~-~lP~~~~~~~~~e~Rl~~R~LdLR~~~~~~~l~~Rs~i~~~iR~ 150 (585)
T 1c0a_A 72 TGTVRARDEKNINRDMATGEIEVLASSLTIINRAD-VLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRR 150 (585)
T ss_dssp EEEEEECCTTTCCTTSTTTTEEEEEEEEEEEECCC-SCSSCTTSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred EeEEEccCcccccccCCCccEEEEEeEEEEEeccC-CCCCCccccCCHhHhhhchHhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 999999854 3467999999999999997 3555433 345566669999999999999999999999999999
Q ss_pred HhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHH-HH
Q 012426 161 FFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TY 239 (464)
Q Consensus 161 ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lq-ll 239 (464)
||.++||+||+||+|+++++||+.+ |.| +++. +.+.-+||+|||||||| +|
T Consensus 151 fl~~~gFlEVeTPiL~~s~~eGAr~-F~v-~~~~--------------------------~~~~~y~L~qSPQl~kq~Lm 202 (585)
T 1c0a_A 151 FMDDHGFLDIETPMLTKATPEGARD-YLV-PSRV--------------------------HKGKFYALPQSPQLFKQLLM 202 (585)
T ss_dssp HHHHTTCEECCCCSSBCCCSSSSCC-CEE-ECSS--------------------------STTCEEECCSCSHHHHHHHH
T ss_pred HHHhCCcEEEeCCEEecCCCCCCcc-cee-cccc--------------------------cCCceEeCccCHHHHHHHHH
Confidence 9999999999999999999998765 855 3321 11222369999999998 57
Q ss_pred hhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHH
Q 012426 240 ATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDR 319 (464)
Q Consensus 240 ~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~ 319 (464)
++|++||||||||||||++++.|| ||||||||||+|+|++|+|+++|+||+++++.+.+.+.. .|.+.++.++
T Consensus 203 v~G~~rvfqI~~~FR~E~~~t~r~-pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v~~~~~~------~f~r~ty~ea 275 (585)
T 1c0a_A 203 MSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLG------DFPVMTFAEA 275 (585)
T ss_dssp HTTCCEEEEEEEEECCCCCBTTBC-SEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSCCCC------SCCEEEHHHH
T ss_pred hcCCCceEEEeceeecCCCCCCcC-cccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCCcc------ccceeeHHHH
Confidence 999999999999999999986555 599999999999999999999999999999998764311 0222222222
Q ss_pred Hhhhh---------------------------------------------CCCCCCCCHHHHHHHHHhcCCCcccCCCcc
Q 012426 320 LSTVA---------------------------------------------ERDFVQLSYTDAIELLIKAKKKFEFLVKWG 354 (464)
Q Consensus 320 l~~~~---------------------------------------------~~~~~~it~~ea~~~l~~~~~~~~~~~~~~ 354 (464)
++.+- +.+|++.+++++.+++++.|.+--..+.|+
T Consensus 276 ~~~~g~dkpd~r~~~~l~d~~~~~~~~~f~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~l~~~~~~~g~~~~~~~~~~ 355 (585)
T 1c0a_A 276 ERRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVN 355 (585)
T ss_dssp HHHHSCSSCCTTSCCCEEECHHHHTTCSCHHHHHHHHCTTEEEEEEEETTGGGCCHHHHHHHHHHHHHTTCSCCCEEEES
T ss_pred HHHhcCCCccccCCceeEEehhhhccCCcceehhhhhccCceEEEEEccccCccCHhhHHHHHHHHHHcCCCCceeEEec
Confidence 22110 113566788889888887653200001222
Q ss_pred c------cccHHHHHH-----------------------------------------------hhhhcccCCCeeeeeCC
Q 012426 355 C------DLQSEHERY-----------------------------------------------LTEEAFGGCPVIVSDYP 381 (464)
Q Consensus 355 ~------~l~~~~e~~-----------------------------------------------l~e~~~~~~p~fI~~yP 381 (464)
+ ++...++++ |+++... +|+||||||
T Consensus 356 ~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~lG~lr~~l~~~~~lve~~~~-~p~fV~dfP 434 (585)
T 1c0a_A 356 ERAKGLEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESKW-APLWVIDFP 434 (585)
T ss_dssp CGGGGGGGEECTTGGGSCHHHHHHHHHHTTCCTTCEEEEEEEEHHHHHHHHHHHHHHHHHHTTCSCSSCC-CEEEEECCB
T ss_pred ccccccccccchhhhhcCHHHHHHHHHHhCCCcCcEEEEecCcccchhhhhHHHHHHHHHHhCccccccc-ccEEEEeCC
Confidence 2 121211111 1222122 699999999
Q ss_pred CC-----------CcccccccCC-------CC-Cc-eeeEEEeeCCccccccCccccccHHHHHHHHHHcCCCccc----
Q 012426 382 KE-----------IKAFYMRQND-------DG-RT-VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS---- 437 (464)
Q Consensus 382 ~~-----------~~pfy~~~~~-------d~-~~-~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~---- 437 (464)
.. .+||||++++ || ++ +++|||+++|+ ||+|||+|+||+++|++||++.|++++.
T Consensus 435 ~~~~~~~~~~~a~~~PFt~~~~~dl~~l~~dp~~~~a~~fDL~i~G~-Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~ 513 (585)
T 1c0a_A 435 MFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGY-EVGGGSVRIHNGDMQQTVFGILGINEEEQREK 513 (585)
T ss_dssp SEEECSSSCEEESSCTTBCBSSCCHHHHHHSCTTCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHH
T ss_pred ccccccccccccccCCccCCCchhhhhhccCCcceeeeEEEEEECCE-EEeeeeeecCCHHHHHHHHHHcCCChHHHHhh
Confidence 96 8999998876 46 36 89999999998 9999999999999999999999999876
Q ss_pred hHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 438 YWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 438 ~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
++|||+|++||+ | |||+++|.+||||+
T Consensus 514 ~~~yL~al~yG~PPhgG~glGlDRLvmlltg~~sIRdV 551 (585)
T 1c0a_A 514 FGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDV 551 (585)
T ss_dssp HHHHHHHTTTTCCCEEEEEEEHHHHHHHHHTCSCGGGG
T ss_pred HHHHHHHHhcCCCCceeEEEcHHHHHHHHcCCCcHHhe
Confidence 899999999998 2 99999999999985
|
| >4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-73 Score=602.46 Aligned_cols=411 Identities=18% Similarity=0.213 Sum_probs=308.6
Q ss_pred CCCCccc-ccceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc---chhhhhc
Q 012426 2 GSKVGEF-RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVKS 77 (464)
Q Consensus 2 ~~~~~~~-~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~---~~~~~~~ 77 (464)
-|....| .++++|.+|... ..|++|+|+|||+++|.+ +|++|||++|. ||||++++.. .++.++.
T Consensus 2 ~~~~~~~~~rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~---~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~~~~ 70 (617)
T 4ah6_A 2 IPEFSSFVVRTNTCGELRSS------HLGQEVTLCGWIQYRRQN---TFLVLRDFDGL--VQVIIPQDESAASVKKILCE 70 (617)
T ss_dssp -CCCSCSSSCSSCGGGCCGG------GTTCEEEEEEEECCCCTT---TEEEEECSSCE--EEEECCCSSSSHHHHHHHHH
T ss_pred CccccccccCceEHHHhHHH------hCCCEEEEEEEeeeecCe---EEEEEEeCCcC--EEEEEeCCcCcHHHHHHHhc
Confidence 3455555 788999999985 689999999999999975 59999999974 9999987642 3556778
Q ss_pred CCCCCCcEEEEEEEEEeCCC-------CCceEEEEEeeEEEEecCCCCCCCCcccc---chhhhhhcceecCCCccchhh
Q 012426 78 GLITTGASIWIQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKRV---SREFLRTKAHLRPRTNTFGAV 147 (464)
Q Consensus 78 ~~l~~g~~V~V~G~v~~~~~-------~~~~~el~~~~i~vls~~~~~~P~~~~~~---~~~~~r~~r~l~~R~~~~~~~ 147 (464)
|+.||+|.|+|+|++++. ..+++||++++|+|||+|. ++|++.+.+ +.+.++++||||+|++.++++
T Consensus 71 --l~~e~~V~V~G~v~~~~~~~~n~~~~tgeiEl~~~~i~vL~~a~-~lP~~~~~~~~~~ee~Rl~~R~LdLR~~~~~~~ 147 (617)
T 4ah6_A 71 --APVESVVQVSGTVISRPAGQENPKMPTGEIEIKVKTAELLNACK-KLPFEIKNFVKKTEALRLQYRYLDLRSFQMQYN 147 (617)
T ss_dssp --CCSSCEEEEEEEEEECSTTCCCTTSTTTTEEEEEEEEEEEECBC-CCSSCTTTTCCSCHHHHHHTHHHHTTSHHHHHH
T ss_pred --CCCCCEEEEEEEEEeCCccccCccCCCCcEEEEEeEEEEeecCC-CCCcccccccccChhhhccceeeeecchHHHHH
Confidence 999999999999998542 2357999999999999998 788876543 344455999999999999999
Q ss_pred hhHHHHHHHHHHHHhh-hCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccc
Q 012426 148 ARVRNALAYATHKFFQ-ENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPA 226 (464)
Q Consensus 148 ~~~rs~i~~~~r~ff~-~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 226 (464)
|++||++++++|+||. ++||+||+||+|+++++||+. .|.+. ++ .++..+
T Consensus 148 lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st~~GA~-~F~v~-~~---------------------------~~g~~~ 198 (617)
T 4ah6_A 148 LRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTPGGAK-EFLVP-SR---------------------------EPGKFY 198 (617)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCCCSSSC-CCEEE-CS---------------------------STTCEE
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCCCCCCc-Cceec-cc---------------------------cCCccc
Confidence 9999999999999996 799999999999998888765 58553 21 246778
Q ss_pred ccccchhHHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccc
Q 012426 227 FLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDM 305 (464)
Q Consensus 227 yL~~Spql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i 305 (464)
||+|||||||| +|++|++||||||||||||+++ .+|+||||||||||+|+|++|+|+++|+|++++++.+..
T Consensus 199 ~L~qSpql~kq~l~v~g~~rvfqi~~~FR~E~~~-t~r~pEFt~lE~e~af~d~~d~m~~~E~l~~~~~~~~~~------ 271 (617)
T 4ah6_A 199 SLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSR-PDRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPNDKD------ 271 (617)
T ss_dssp ECCSSTTHHHHHHHHTSCSEEEEEEEEECCCSSC-SSSCSEEEEEEEEEESCCHHHHHHHHHHHHHHHSCSSSC------
T ss_pred ccccCHHHHHHHHHhcccCcEEEEEhheecccCC-CCcCcceecceeeecCCCHHHHHHHHHHHHHHHHHHhcC------
Confidence 99999999997 5789999999999999999997 567999999999999999999999999999998764321
Q ss_pred cccccccccchHHHHhhhhCCC-----------------------------------------------CCCCCHHHHHH
Q 012426 306 DFFNTWIEKGIIDRLSTVAERD-----------------------------------------------FVQLSYTDAIE 338 (464)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~-----------------------------------------------~~~it~~ea~~ 338 (464)
++..+|.+.++.+++..+ |.+ +.|-..++..+
T Consensus 272 ~~~~pf~r~ty~eA~~~y-gsDkPDlR~~~ei~DVtdif~~s~FkVF~~~~~~~~g~VkAI~vpg~a~~lsRK~id~L~e 350 (617)
T 4ah6_A 272 PVVVPFPTMTFAEVLATY-GTDKPDTRFGMKIIDISDVFRNTEIGFLQDALSKPHGTVKAICIPEGAKYLKRKDIESIRN 350 (617)
T ss_dssp CCCSSCCEEEHHHHHHHT-SSSSCCSSSCCCEEECGGGGSSCCCHHHHHHTTSTTEEEEEEEEESCTTTSCTTTHHHHHH
T ss_pred ccCCCceEeEHHHHHHHH-cCCCCccccCcccccHHHHhccCCchhHhhhhhcCCCeEEEEEcCCCccccchhhHHHHHH
Confidence 111223333333333221 110 11111222222
Q ss_pred HHHh-cCCC-----------cccCC------------------Cccccc------cHHHHHHh-------hhhc------
Q 012426 339 LLIK-AKKK-----------FEFLV------------------KWGCDL------QSEHERYL-------TEEA------ 369 (464)
Q Consensus 339 ~l~~-~~~~-----------~~~~~------------------~~~~~l------~~~~e~~l-------~e~~------ 369 (464)
..+. .|.. +..|+ +.|+.+ .......| .+.+
T Consensus 351 ~ak~~~g~ggl~~~~~~d~~~~~~I~Kflsee~~~~L~e~l~a~~GDlIff~Ag~~~~v~~~LG~LR~~l~~~L~~~~~~ 430 (617)
T 4ah6_A 351 FAADHFNQEILPVFLNANRNWNSPVANFIMESQRLELIRLMETQEEDVVLLTAGEHNKACSLLGKLRLECADLLETRGVV 430 (617)
T ss_dssp HHHHSSCCCEEEECSSTTTTSSCTTHHHHHHHHHHHHHHHHTCCSSEEEEEEEEEHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHhcCCceEEEEEecCCccccchhhhcCHHHHHHHHHHhCCCCCCEEEEecCChHHHHHHHHHHHHHHHHHhhhcccc
Confidence 2222 1110 00000 001100 00000000 1111
Q ss_pred -c---cCCCeeeeeCCCC-------------CcccccccCCC-------C--CceeeEEEeeCCccccccCccccccHHH
Q 012426 370 -F---GGCPVIVSDYPKE-------------IKAFYMRQNDD-------G--RTVAAMDMLVPRIGELIGGSQREERLEY 423 (464)
Q Consensus 370 -~---~~~p~fI~~yP~~-------------~~pfy~~~~~d-------~--~~~~~fdl~~~GigEi~~G~~r~~d~~~ 423 (464)
. .-.++||+|||.. ..||.|+..+| | -.+.+|||+++|+ ||+|||+|+||++.
T Consensus 431 l~~~~~~~f~WvvdfPlf~~~~~~~~~~~a~HhPFT~P~~~d~~~l~~~p~~~~a~~ydlv~~g~-El~~gs~ri~~~~~ 509 (617)
T 4ah6_A 431 LRDPTLFSFLWVVDFPLFLPKEENPRELESAHHPFTAPHPSDIHLLYTEPKKARSQHYDLVLNGN-EIGGGSIRIHNAEL 509 (617)
T ss_dssp SCCTTSCCEEEEECCBSBCCCSSSSSSCCBSSCSSCCCCCTTSTHHHHSTTSSBCCCEEEEETTE-EEEEEECCCCSHHH
T ss_pred ccCCCCeEEEEEeccCCcCCccccccceeeccCCcCCCChhhHHHhhcChhhhhhceEEEEECCE-EEeeeeEEcCCHHH
Confidence 0 1258999999974 36888876543 2 3578999999996 99999999999999
Q ss_pred HHHHHH-HcCCCccchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 424 LEGRLD-ELKLNRDSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 424 l~~r~~-~~g~~~~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
|+++|+ ..|++++.++|||+|++||+ | |||+++|.+||||+
T Consensus 510 q~~~f~~~~~~~~~~~~~~l~a~~~G~pphgG~a~G~dRlvml~~g~~~irdv 562 (617)
T 4ah6_A 510 QRYILATLLKEDVKMLSHLLQALDYGAPPHGGIALGLDRLICLVTGSPSIRDV 562 (617)
T ss_dssp HHHHHHHHCSSTHHHHHHHHHHHTBTCCCEEEEEEEHHHHHHHHHTCSSGGGS
T ss_pred HHHHHHHhhccchhhHHHHHHHHHcCCCCCCceeecHHHHHHHHcCCCchheE
Confidence 999999 78999889999999999998 2 99999999999996
|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-65 Score=515.38 Aligned_cols=285 Identities=16% Similarity=0.140 Sum_probs=227.5
Q ss_pred cCCCccchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCC-CCCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 012426 138 RPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE-GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (464)
Q Consensus 138 ~~R~~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~e-g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
..|++ .+++|++||+|++++|+||.++||+||+||+|++++++ +++++|.+....+
T Consensus 27 ~~~~~-~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~~~~~~---------------------- 83 (345)
T 3a5y_A 27 WQPSA-SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGP---------------------- 83 (345)
T ss_dssp TSCSS-CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEEEECCS----------------------
T ss_pred cCCch-HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEEEecCc----------------------
Confidence 44555 88999999999999999999999999999999987765 5789997632110
Q ss_pred ccccccCcccccccchhHHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHH
Q 012426 217 WSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVR 295 (464)
Q Consensus 217 ~~~~~f~~~~yL~~Spql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~ 295 (464)
..-.+.++||+|||||||| ++++|++||||||||||||++ +.||+|||||||||++|+|++|+|+++|+||+++++
T Consensus 84 --~~~~~~~~yL~~Spql~~k~l~~~g~~rvyqIg~~FR~E~~-~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~v~~ 160 (345)
T 3a5y_A 84 --GHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEM-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLD 160 (345)
T ss_dssp --TTSCCEEEEECSCSHHHHHHHHHTTCCSEEEEEEEECCCCC-BTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHC
T ss_pred --ccccCCCEeecCCHHHHHHHHHHcCCCcEEEEEcceeCCCC-cccccchhheeeeeeeCCCHHHHHHHHHHHHHHHHc
Confidence 0001278999999999998 789999999999999999999 799999999999999999999999999999999986
Q ss_pred HHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCcc-ccccHHHHHHhhh---hcc-
Q 012426 296 YILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWG-CDLQSEHERYLTE---EAF- 370 (464)
Q Consensus 296 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~-~~l~~~~e~~l~e---~~~- 370 (464)
. .+|.+.++.+++++++|.+.+.++++++.+++++.|... +.++ .++..++|+++.+ +.+
T Consensus 161 ~------------~~~~rity~ea~~~~~g~d~~~~~~~~l~~~~~~~g~~~---~~~~~~~~~~~~e~~l~~~ve~~lg 225 (345)
T 3a5y_A 161 C------------PAAESLSYQQAFLRYLEIDPLSADKTQLREVAAKLDLSN---VADTEEDRDTLLQLLFTFGVEPNIG 225 (345)
T ss_dssp C------------CCCEEEEHHHHHHHHTCCCTTCCC---------------------------HHHHHHHHHHTGGGSS
T ss_pred C------------CCCcEeeHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCcc---cCCCcCCHhHHHHHHHHHHHHHHcC
Confidence 1 257778889999988888888889999999888877541 2344 4566677776653 333
Q ss_pred cCCCeeeeeCCCCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHc-------CCCccch-HHHH
Q 012426 371 GGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-------KLNRDSY-WWYL 442 (464)
Q Consensus 371 ~~~p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~-------g~~~~~~-~~yl 442 (464)
..+|+||||||..++||++..++++.+++|||||++|+ ||+|||+|+||+++|++||++. |+++..+ +|||
T Consensus 226 ~~~p~fv~dyP~~~~~~~~~~~~~~~~a~~fDL~~~G~-Ei~~G~~rl~d~~~q~~rf~~~~~~~~~~g~~~~~~d~~yl 304 (345)
T 3a5y_A 226 KEKPTFVYHFPASQASLAQISTEDHRVAERFEVYYKGI-ELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPIDQNLI 304 (345)
T ss_dssp SSSCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHHTTCCCCCCCHHHH
T ss_pred CCCEEEEECCChhhChhhCCCCCCCCeEEEEEEEECCE-EEeeeEEEeCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 23799999999999999987777788999999999998 9999999999999999999875 8999888 6999
Q ss_pred HHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 443 DLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 443 ~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
+|++||+ | |||+++|.+||||+
T Consensus 305 ~al~yG~PPhgG~glGiDRLvmll~g~~~IRdV 337 (345)
T 3a5y_A 305 EALKVGMPDCSGVALGVDRLVMLALGAETLAEV 337 (345)
T ss_dssp HHHHHCCCSEEEEEEEHHHHHHHHHTCSSGGGG
T ss_pred HHHhcCCCCCcEEEEcHHHHHHHHcCCCcHheE
Confidence 9999998 3 99999999999985
|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-57 Score=447.37 Aligned_cols=257 Identities=23% Similarity=0.385 Sum_probs=225.5
Q ss_pred hcceecCCCccchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeec--------CCCCCCCCceeeecCCCcccccCCCC
Q 012426 133 TKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS--------DCEGAGEQFCVTTLIPSSREAAESPV 204 (464)
Q Consensus 133 ~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~--------~~eg~~~~F~vt~~~~~~~~~~~~~~ 204 (464)
+||++|+|++ +++++++|++|++++|+||.++||+||+||+|+++ .+|+ +++|.+
T Consensus 1 ~~r~l~lr~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f~~--------------- 63 (294)
T 1nnh_A 1 MNAVEIISRE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPAEV--------------- 63 (294)
T ss_dssp -CHHHHHTSC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCCEE---------------
T ss_pred CchHHhhhcc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeEEE---------------
Confidence 4899999999 99999999999999999999999999999999999 8888 888865
Q ss_pred CCCCCCCCCCccccccccCcccccccchhHHHH-HHhhccCceEEEccccccCC--CCCccccccchhccceeccCCHHH
Q 012426 205 DAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAEN--SNTSRHLAEFWMIEPELAFADLKD 281 (464)
Q Consensus 205 ~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lq-ll~~g~~rVfeI~~~FR~E~--~~t~rHl~EFtmlE~e~a~~~~~d 281 (464)
+|+++++||++|||+|+| ++++|++|||+||||||+|+ ++|.||+|||||||+|++|.|++|
T Consensus 64 ---------------~~~~~~~~L~~Spe~~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~ 128 (294)
T 1nnh_A 64 ---------------EIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMED 128 (294)
T ss_dssp ---------------EETTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHH
T ss_pred ---------------EcCCCCEEeccChHHHHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHH
Confidence 477889999999999997 46778999999999999999 887899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHH
Q 012426 282 DMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 361 (464)
Q Consensus 282 lm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~ 361 (464)
+|+++|+|++.+++.+.+....+++ .++. |+|++|.||++. ||. ++
T Consensus 129 l~~~~e~l~~~l~~~~~~~~~~~i~----------------~~~~-~~r~~y~ea~~~-------------~g~----~~ 174 (294)
T 1nnh_A 129 IMRLIERLVYGLFRKAEEWTGREFP----------------KTKR-FEVFEYSEVLEE-------------FGS----DE 174 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCC----------------CCSS-CEEEEHHHHHHH-------------TSS----HH
T ss_pred HHHHHHHHHHHHHHHHHhhhccccc----------------cCCC-ceEeEHHHHHHH-------------hCC----hH
Confidence 9999999999999887642111110 1233 899999999852 332 34
Q ss_pred HHHhhhhcccCCCeeeeeCCCCCcccccccCCCCCceeeEEEeeC-CccccccCccccccHHHHHHHHHHcCCCccchHH
Q 012426 362 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWW 440 (464)
Q Consensus 362 e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~-GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~ 440 (464)
|+ ++. .. .|+||+||| +|||++. |++++++||||++ |+|||+|||+|++|++.|.++++..|++++.|+|
T Consensus 175 er--~~~-~~-~P~~v~~~P---~pf~~~~--d~~~~~~~Dl~~~~g~~Ei~~g~~r~~d~~~l~~~~~~~g~~~~~~~~ 245 (294)
T 1nnh_A 175 KA--SQE-ME-EPFWIINIP---REFYDRE--VDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRP 245 (294)
T ss_dssp HH--HHH-CS-SCEEEECCC---CCTTBCE--ETTEECEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHH
T ss_pred hh--hhh-cC-CCEEEEcCC---hHHhCCC--CCCeEEEEEEEECCCcEEEecCeeecCCHHHHHHHHHHcCCCccCHHH
Confidence 54 333 33 799999999 9999987 7889999999999 9999999999999999999999999999999999
Q ss_pred HHHHhhhhh---------h---HhhhhcCCCCCCCC
Q 012426 441 YLDLRHYGS---------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 441 yl~~~~~G~---------g---L~mll~~~~~I~~~ 464 (464)
||++++||+ | |+|+++|.+||||+
T Consensus 246 ~l~~l~~G~p~P~~G~glGieRL~mll~g~~~Irdv 281 (294)
T 1nnh_A 246 YLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEV 281 (294)
T ss_dssp HHHHHHTTCCCCEEEEEEEHHHHHHHHHTCSSGGGG
T ss_pred HHHHHhcCCCCCceEEEEcHHHHHHHHhCCCCHHHE
Confidence 999999987 3 99999999999985
|
| >3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=7.6e-23 Score=202.15 Aligned_cols=171 Identities=15% Similarity=0.158 Sum_probs=129.0
Q ss_pred CCCCceEEEEEeeEEEEecCCCCCCCCccccchhhhhhcceecCCCccchhhhhH-----HHHHHHHHHHHhhhCCcEEE
Q 012426 96 QGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARV-----RNALAYATHKFFQENGFIWI 170 (464)
Q Consensus 96 ~~~~~~~el~~~~i~vls~~~~~~P~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~-----rs~i~~~~r~ff~~~gF~EV 170 (464)
+++.+++||++++++||++|..++|++.+.. ..++++||||+|++.+.++++. ++++.+.+|++|.+.||.||
T Consensus 21 ~~~~~~~ei~~~~~~vl~~a~~~~P~~~~~~--~~~l~~r~l~~R~~~~~~i~~~g~~~~~~~i~~~ir~~l~~~Gf~EV 98 (290)
T 3qtc_A 21 ASAPALTKSQTDRLEVLLNPKDEISLNSGKP--FRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEI 98 (290)
T ss_dssp ---CCCCHHHHHHHHHHCCTTCC----CCSC--HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCEEE
T ss_pred cCCCceEEEEhhhhhhhccCCCCCCCCcchh--hhhhhhHHHHhccchHHHHhccccccHHHHHHHHHHHHHHHCCCEEE
Confidence 3445679999999999999987789876544 3377999999999999999999 99999999999999999999
Q ss_pred eCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccc--cchhHHHHHH--h---hcc
Q 012426 171 SSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT--VSGQLNAETY--A---TAL 243 (464)
Q Consensus 171 ~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~--~Spql~lqll--~---~g~ 243 (464)
.||+|++..+.. ..+ ++..++ + .....+++...+|+ +|||++..+. . .+.
T Consensus 99 ~Tp~l~~~~~~~--~~~-~~~~~p---------~-----------~~~~~~~~~~~~LR~slsp~L~~~l~~n~~~~~~p 155 (290)
T 3qtc_A 99 KSPILIPLEYIE--RMG-IDNDTE---------L-----------SKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPDP 155 (290)
T ss_dssp CCCSEEETHHHH--HTT-CCTTSS---------G-----------GGGCCEETTTEEECSCSHHHHHHHHHHHTTTSCSS
T ss_pred ECCceeeHHHHH--hcC-CCcCCc---------h-----------hhhheeeCCCeeEcccChHHHHHHHHHhhccCCCC
Confidence 999999875321 111 111111 0 00113567788999 9999997542 2 456
Q ss_pred CceEEEccccccCCCCCccccccchhccceeccCC--HHHHHHHHHHHHHH
Q 012426 244 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD--LKDDMACATAYLQY 292 (464)
Q Consensus 244 ~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~--~~dlm~~~e~li~~ 292 (464)
.|+||||+|||+|.. +.+|++||||+|+++++.+ +.++..+++++++.
T Consensus 156 ~rlfeiG~vFR~E~~-~~~~~~Ef~ql~~~~~g~~~~f~elkg~le~ll~~ 205 (290)
T 3qtc_A 156 IKIFEIGPCYRKESD-GKEHLEEFTMLVFWQMGSGCTRENLESIITDFLNH 205 (290)
T ss_dssp EEEEEEEEEECCCSC-SSSCCSEEEEEEEEEESTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEEcCEEecCCC-CCcCcchheEEEEEEEcCChHHHHHHHHHHHHHHH
Confidence 899999999999977 5899999999999999974 77777777776654
|
| >12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-16 Score=151.77 Aligned_cols=264 Identities=11% Similarity=0.036 Sum_probs=188.6
Q ss_pred hhhHHHHHHHHHHHHhh-----hCCcEEEeCceEeecCCCCCCC----CceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 012426 147 VARVRNALAYATHKFFQ-----ENGFIWISSPIITASDCEGAGE----QFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (464)
Q Consensus 147 ~~~~rs~i~~~~r~ff~-----~~gF~EV~TP~L~~~~~eg~~~----~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (464)
.++-....+..+++||. +.|+++|..|+++....+-+.+ --.|+ +
T Consensus 4 ~~~~tq~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~ErpV~--------------------------f 57 (330)
T 12as_A 4 AYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQ--------------------------V 57 (330)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCE--------------------------E
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCcEEecCCEEecCCCCCCCCCCCceecce--------------------------E
Confidence 45677888999999999 8999999999999865432211 00111 0
Q ss_pred cc-cccCcccccccchhHHHHHH-h-hcc---CceEEEccccccCCC-CCccccccchhccceeccCCHHHHHHHHHHHH
Q 012426 218 SQ-DFFEKPAFLTVSGQLNAETY-A-TAL---SNVYTFGPTFRAENS-NTSRHLAEFWMIEPELAFADLKDDMACATAYL 290 (464)
Q Consensus 218 ~~-~~f~~~~yL~~Spql~lqll-~-~g~---~rVfeI~~~FR~E~~-~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li 290 (464)
+. +.-+..+-+.+|--.|||+. . .+| +.+|+-.++-|.++- .+.+|.-+|.|.|||.....-+..|+++++.+
T Consensus 58 ~i~~~~~~~~eivhSLaKWKR~aL~~y~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~tV 137 (330)
T 12as_A 58 KVKALPDAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTV 137 (330)
T ss_dssp CCSSSTTCCEEECSCCTTHHHHHHHHTTCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHH
T ss_pred ecccCCCceEEEeeeHHHHHHHHHHhCCCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHHH
Confidence 00 11155677899999999964 3 357 999999999998654 56999999999999999988888899999998
Q ss_pred HHHHHHHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcc
Q 012426 291 QYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAF 370 (464)
Q Consensus 291 ~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~ 370 (464)
+.|...+...-. .+ ...+ .+.+.+..++..||.+|+.+.+ ++.-.++-|..+++.+
T Consensus 138 ~~Iy~~ik~tE~-~~--~~~y-------~l~p~Lp~~i~fitsqeL~~~Y-------------P~lt~keRE~~i~ke~- 193 (330)
T 12as_A 138 EAIWAGIKATEA-AV--SEEF-------GLAPFLPDQIHFVHSQELLSRY-------------PDLDAKGRERAIAKDL- 193 (330)
T ss_dssp HHHHHHHHHHHH-HH--HHHS-------CCCCCSCSSCEEEEHHHHHHHS-------------SSSCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHH-HH--HHHh-------ccCcCCCCceEEEeHHHHHHHc-------------CCCChHHHHHHHHHhh-
Confidence 877776653210 00 0000 0111244566678888876653 2222345566666654
Q ss_pred cCCCeeeeeCCCCCcc--cccccCC-CCCce---------eeEEEee-----CCccccccCccccccHHHHHHHHHHcCC
Q 012426 371 GGCPVIVSDYPKEIKA--FYMRQND-DGRTV---------AAMDMLV-----PRIGELIGGSQREERLEYLEGRLDELKL 433 (464)
Q Consensus 371 ~~~p~fI~~yP~~~~p--fy~~~~~-d~~~~---------~~fdl~~-----~GigEi~~G~~r~~d~~~l~~r~~~~g~ 433 (464)
.||||++.|..++- ++....+ -+... .+.||++ .+..||.+++.| .|++.|.++++..|.
T Consensus 194 --gaVFii~IG~~L~~g~~HD~RaPDYDDW~t~~~~~~~gLNGDilvw~~vl~~a~ElSSMGIR-Vd~~~L~~QL~~~g~ 270 (330)
T 12as_A 194 --GAVFLVGIGGKLSDGHRHDVRAPDYDDWSTPSELGHAGLNGDILVWNPVLEDAFELSSMGIR-VDADTLKHQLALTGD 270 (330)
T ss_dssp --SEEEEECCSSCCSSSCCSSCCCTTTBCCSSBCTTSSBCSEEEEEEEETTTTEEEEEEEEEEB-CCHHHHHHHHHHHTC
T ss_pred --CCEEEEecCCccCCCCcCcCcCCCCCCccccccccccCccceEEEeccccCceeEEecceEE-eCHHHHHHHHHHcCC
Confidence 69999999966432 3322222 12344 8899999 466799999999 999999999999999
Q ss_pred CccchHHHHHHhhhhh---------h---HhhhhcCCCCCCC
Q 012426 434 NRDSYWWYLDLRHYGS---------G---LVFILIKVTNFLN 463 (464)
Q Consensus 434 ~~~~~~~yl~~~~~G~---------g---L~mll~~~~~I~~ 463 (464)
......+|..++..|. | |+|+|++...|.+
T Consensus 271 ~er~~~~yh~~ll~g~LP~TiGGGIGQSRLcmflL~k~HIGE 312 (330)
T 12as_A 271 EDRLELEWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQ 312 (330)
T ss_dssp TTGGGSHHHHHHHTTCSCCEEEEEEEHHHHHHHHHTCSCGGG
T ss_pred ChhhccHHHHHHHcCCCCccccccccHHHHHHHHhccchhhe
Confidence 8888889999887765 3 9999999999865
|
| >3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-11 Score=121.94 Aligned_cols=100 Identities=17% Similarity=0.288 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-CCCC-----CCceeeecCCCcccccCCCCCCCCCCCCCCccccccc
Q 012426 148 ARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (464)
Q Consensus 148 ~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-eg~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (464)
.....++.+.+|++|...||.||.||.|++... +..+ +.|.+ . +.
T Consensus 70 ~h~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~--~---------------------------np 120 (288)
T 3dsq_A 70 RPALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQ--V---------------------------FW 120 (288)
T ss_dssp SCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTT--S---------------------------CE
T ss_pred cCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEe--e---------------------------cc
Confidence 344578899999999999999999999998431 1100 11111 0 11
Q ss_pred cCcccccc--cchhHHH--HHHhhccC---ceEEEccccccCCCCCccccccchhccceeccC
Q 012426 222 FEKPAFLT--VSGQLNA--ETYATALS---NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 277 (464)
Q Consensus 222 f~~~~yL~--~Spql~l--qll~~g~~---rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~ 277 (464)
.+...+|+ .+|.+.. +.....-+ |+|++|+|||+|..+ ..|.+||+|+|++....
T Consensus 121 l~e~~~LRp~l~p~l~~~~r~~~~~~~~PlrlfeiG~vFR~E~~~-~~r~~EF~qle~~i~g~ 182 (288)
T 3dsq_A 121 LDGKKCLRPMLAPNLYTLWRELERLWDKPIRIFEIGTCYRKESQG-AQHLNEFTMLNLTELGT 182 (288)
T ss_dssp EETTEEECSCSHHHHHHHHHHHTTTSCSCEEEEEEEEEECSCCSS-SCCCSEEEEEEEEEETC
T ss_pred cccchhhhhcChHHHHHHHHHHHhCCCCCEEEEEEeeEEecCCCC-CCcCccEEEEEEEEEcC
Confidence 12345676 3465542 22222233 899999999999985 78999999999998664
|
| >2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=6.5e-11 Score=116.72 Aligned_cols=125 Identities=9% Similarity=0.056 Sum_probs=86.3
Q ss_pred hhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCC-ceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcc
Q 012426 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ-FCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKP 225 (464)
Q Consensus 147 ~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~-F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 225 (464)
.....+++.+.+|++|...||.||++|.+.+.... .... | .+.++ +++.- +.-|....
T Consensus 51 ~~~~~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~n-f~~l~~-~~~~p------ar~~~-------------d~~~l~e~ 109 (294)
T 2rhq_A 51 SKHPLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYN-FEALNL-PKSHP------ARDMQ-------------DSFYITDE 109 (294)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHH-TGGGTC-CTTCG------GGCTT-------------TSCBSSSS
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEcCcceeeehhh-HHhhCC-CCCcc------ccccC-------------CcEEEcCc
Confidence 34556788999999999999999999998764211 1111 2 11111 11000 00011233
Q ss_pred cccccchhHHH-HHHhhc----cCceEEEccccccCCCCCccccccchhccceecc--CCHHHHHHHHHHHHHHH
Q 012426 226 AFLTVSGQLNA-ETYATA----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQYV 293 (464)
Q Consensus 226 ~yL~~Spql~l-qll~~g----~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~--~~~~dlm~~~e~li~~i 293 (464)
.+|++|.--.+ ++++.+ -.|+||||+|||+++.+ .+|+|||+|||+++++ .|+.+++..++.+++.+
T Consensus 110 ~vLRtsl~p~ll~~l~~N~~~~~~riFEiG~Vfr~d~~d-~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l 183 (294)
T 2rhq_A 110 ILMRTHTSPVQARTMEKRNGQGPVKIICPGKVYRRDSDD-ATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKL 183 (294)
T ss_dssp EEECSSSHHHHHHHHHHTTTCSCEEEEEEEEEECCCCCB-TTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ceeeccCHHHHHHHHHhcCCCCCccEEEEcCEEecCCCC-CCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 45655555555 788776 67999999999998764 6799999999999999 57999999999888765
|
| >1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=5.5e-10 Score=112.25 Aligned_cols=133 Identities=11% Similarity=-0.027 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCC-ceeeecCCCcccccCC---CCC-CCCCCCCCCccccccccC
Q 012426 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ-FCVTTLIPSSREAAES---PVD-AIPKTKDGLIDWSQDFFE 223 (464)
Q Consensus 149 ~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~-F~vt~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~f~ 223 (464)
...+++.+.+|++|...||.||.+|.+.+.... .... | ...|+++..+++.. |.. ..+..+. .-.
T Consensus 101 hp~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~n-fd~L~~-p~~hpar~~~dt~~l~nP~s~~~~~~~~--------~~~ 170 (350)
T 1b7y_A 101 HPITLMERELVEIFRALGYQAVEGPEVESEFFN-FDALNI-PEHHPARDMWDTFWLTGEGFRLEGPLGE--------EVE 170 (350)
T ss_dssp CHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHH-TTTTTC-CSSSTTTTSSCCCBEECSSCCCBCTTSC--------BCC
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECcchhcchhH-HHhhCC-CCCCccccccccEEEcCccccccccccc--------ccc
Confidence 445778899999999999999999999774210 0111 1 11122111000000 000 0000000 000
Q ss_pred cc--cccccchhHHHHHHhhcc--CceEEEccccccCCCCCccccccchhccceeccC--CHHHHHHHHHHHHHHH
Q 012426 224 KP--AFLTVSGQLNAETYATAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 293 (464)
Q Consensus 224 ~~--~yL~~Spql~lqll~~g~--~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i 293 (464)
.. +..++||.+. +++..+- -|+|+||+|||+|+.+ .+|+|||+|||+++++. |+.|++..++.+++.+
T Consensus 171 ~~~vLRt~tsp~ll-r~l~~~~~piriFEiGrVFR~d~~d-~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~l 244 (350)
T 1b7y_A 171 GRLLLRTHTSPMQV-RYMVAHTPPFRIVVPGRVFRFEQTD-ATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQAL 244 (350)
T ss_dssp SCEEECSSSTHHHH-HHHHHCCSSEEEEEEEEEECCCCCC-SSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred ccceeeccchHHHH-HHHHhcCCCeeEEEeeeEEECCCCC-CCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhh
Confidence 11 2345566554 7666543 4799999999999875 68999999999999987 7999999999888664
|
| >3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.39 E-value=4.5e-07 Score=90.03 Aligned_cols=124 Identities=15% Similarity=0.198 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccc
Q 012426 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAF 227 (464)
Q Consensus 148 ~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~y 227 (464)
...-+.+...+|++|...||.|+.+|.+.+.... ...+. +. ..|++++. + +.-|.+....
T Consensus 106 ~hp~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~n-Fd~Ln-~p-----~dhpaR~~----------~---dt~~i~e~~v 165 (327)
T 3pco_A 106 LHPVTRTIDRIESFFGELGFTVATGPEIEDDYHN-FDALN-IP-----GHHPARAD----------H---DTFWFDTTRL 165 (327)
T ss_dssp CCHHHHHHHHHHHHHHTTTCBCCCCCSEECTCCC-CCTTT-CC-----SSSHHHHH----------T---TCCBSSSSCE
T ss_pred CCHHHHHHHHHHHHHHHCCCeEEECCCccCCHHH-HHhhC-CC-----CCChhhcc----------c---ccEEeCCCce
Confidence 3445677899999999999999999988654322 11111 11 11111100 0 0011122223
Q ss_pred c--ccchhHHHHHHhhccC--ceEEEccccccCCCCCccccccchhccceeccC--CHHHHHHHHHHHHHHHH
Q 012426 228 L--TVSGQLNAETYATALS--NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYVV 294 (464)
Q Consensus 228 L--~~Spql~lqll~~g~~--rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i~ 294 (464)
| ++||.+ ++.+..+-. |+|++|+|||++ . ..+|+|+|+|+|+..... ++.++...++.+++.++
T Consensus 166 LRThtsp~~-lr~l~~~~~pirifeiGrVyR~d-~-d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~lf 235 (327)
T 3pco_A 166 LRTQTSGVQ-IRTMKAQQPPIRIIAPGRVYRND-Y-DQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFF 235 (327)
T ss_dssp ECSCTHHHH-HHHHTTCCSSCCBCCEECCBCSC-C-BTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred ecccCCHHH-HHHHHhCCCCeeEEeeccEEecC-C-CcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 4 455654 466665544 899999999998 4 489999999999887754 69999999998887763
|
| >3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.7e-07 Score=96.40 Aligned_cols=146 Identities=16% Similarity=0.180 Sum_probs=87.1
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeC-ceEeecCCCCCCCCceeeecCCCcccccCC---CC----------CCCCC
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISS-PIITASDCEGAGEQFCVTTLIPSSREAAES---PV----------DAIPK 209 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~T-P~L~~~~~eg~~~~F~vt~~~~~~~~~~~~---~~----------~~~~~ 209 (464)
....+...+++...+|++|...||.||.| |.+.+.... ...++...+|+++..|++.. |. +++..
T Consensus 220 ~~G~lHPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~N-FDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~ 298 (508)
T 3l4g_A 220 DSGHLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWN-FDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKR 298 (508)
T ss_dssp CCCBCCHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHH-TGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCeEeccCCccccHHHH-HHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhh
Confidence 34556777889999999999999999875 777764322 22233223333332222111 11 01111
Q ss_pred CC-CCCccccccccCc--------ccccccchhHHH-HHHhh-----c--cCceEEEccccccCCCCCccccccchhccc
Q 012426 210 TK-DGLIDWSQDFFEK--------PAFLTVSGQLNA-ETYAT-----A--LSNVYTFGPTFRAENSNTSRHLAEFWMIEP 272 (464)
Q Consensus 210 ~~-~~~~~~~~~~f~~--------~~yL~~Spql~l-qll~~-----g--~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~ 272 (464)
+| +|. +....|+. ..-|+++-=-.+ ++|.. + =-|+|+||+|||+|..+ .+|+|+|+|+|+
T Consensus 299 ~He~g~--~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~D-atHlpeFhQleg 375 (508)
T 3l4g_A 299 THSQGG--YGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLD-ATHLAEFHQIEG 375 (508)
T ss_dssp HHHTCB--TTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCC-SSSCSEEEEEEE
T ss_pred hhhccc--cCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCC-CCcCCeEEEEEE
Confidence 22 111 00111222 234544432222 44432 2 23799999999999985 799999999999
Q ss_pred eeccC--CHHHHHHHHHHHHHHH
Q 012426 273 ELAFA--DLKDDMACATAYLQYV 293 (464)
Q Consensus 273 e~a~~--~~~dlm~~~e~li~~i 293 (464)
.++.. ++.+++..++.+++.+
T Consensus 376 l~~~~~v~f~dLKg~Le~~l~~l 398 (508)
T 3l4g_A 376 VVADHGLTLGHLMGVLREFFTKL 398 (508)
T ss_dssp EEEEESCCHHHHHHHHHHHHHTT
T ss_pred EEECCCCCHHHHHHHHHHHHHHc
Confidence 88754 7999999888876553
|
| >2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=4.6e-06 Score=87.01 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=78.4
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC----CC----CCCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD----CE----GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~----~e----g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
....-.+++.+|.+.+|+.|.+.||.||.||+|.+.. ++ -..++|.+++.
T Consensus 62 ~lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~~d~---------------------- 119 (458)
T 2i4l_A 62 WLPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADR---------------------- 119 (458)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEECT----------------------
T ss_pred ECCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceEEEEeC----------------------
Confidence 4566789999999999999999999999999999853 11 13455655321
Q ss_pred ccccccccCcccccccch-hHHH---HHHhhcc----CceEEEccccccCCCCCcc----ccccchhccceeccCCHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSG-QLNA---ETYATAL----SNVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFADLKDD 282 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Sp-ql~l---qll~~g~----~rVfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~a~~~~~dl 282 (464)
-++.++|+... +..- +..+... -|+|+|++|||+|.. ++ -..||+|.|+|.-..+..++
T Consensus 120 -------~~~~~~LrPt~ee~t~~i~r~~~~s~~~lP~rl~~ig~~fR~E~~--p~~Gl~R~REF~q~d~~~f~~~~~~a 190 (458)
T 2i4l_A 120 -------HKRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQR--PRFGVMRGREFLMKDAYSFDVDEAGA 190 (458)
T ss_dssp -------TCCEEEECSCCHHHHHHHHHHHCCBGGGCSEEEEEEEEEECCCSS--CBTGGGBCSEEEEEEEEEEESSHHHH
T ss_pred -------CCCeEEECCCChHHHHHHHHHHHhhccccCeeeEEecCEeeCCCC--CCCCcccccceEEeEEEEEECCHHHH
Confidence 13455666432 3322 2222222 489999999999943 23 34799999999977666555
Q ss_pred HHHHHHH
Q 012426 283 MACATAY 289 (464)
Q Consensus 283 m~~~e~l 289 (464)
-..+..+
T Consensus 191 d~e~~~~ 197 (458)
T 2i4l_A 191 RKSYNKM 197 (458)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
|
| >1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=2.4e-06 Score=87.56 Aligned_cols=117 Identities=14% Similarity=0.137 Sum_probs=78.7
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-C--C-----CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-e--g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
....-.+++..|.+.+|+.|.+.||.||.||+|.+..- . | ..++|. .+.
T Consensus 25 ~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~-~d~---------------------- 81 (401)
T 1evl_A 25 WHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSS---------------------- 81 (401)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCE-EEE----------------------
T ss_pred ECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEe-Eec----------------------
Confidence 34556889999999999999999999999999998641 1 1 123443 211
Q ss_pred ccccccccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCCCCcc----ccccchhccceeccCCHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFADLKDD 282 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~a~~~~~dl 282 (464)
-+..++|+...+-.. ++++.. + -|+|+||+|||+|.+ +++ -..||+|.|+|. |.+..++
T Consensus 82 -------~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~-~p~~Gl~R~reF~q~d~~~-f~~~~~~ 152 (401)
T 1evl_A 82 -------ENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPS-GSLHGLMRVRGFTQDDAHI-FCTEEQI 152 (401)
T ss_dssp -------TTEEEEECSCSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEE-EECGGGH
T ss_pred -------CCceEEEcCCCCHHHHHHHHhhhhhhhhCChhhccccceecCCCC-cccccccccCcEEecceEE-eCCHHHH
Confidence 134556765554444 444321 2 489999999999986 233 246999999995 6665555
Q ss_pred HHHHHHHHH
Q 012426 283 MACATAYLQ 291 (464)
Q Consensus 283 m~~~e~li~ 291 (464)
....++++.
T Consensus 153 ~~e~~e~i~ 161 (401)
T 1evl_A 153 RDEVNGCIR 161 (401)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 554444443
|
| >2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.10 E-value=4.2e-06 Score=86.35 Aligned_cols=120 Identities=15% Similarity=0.179 Sum_probs=74.1
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-C--CCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-e--g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (464)
......+++..|.+.+++.+.+.||.||.||+|..... + |...-|.- .. +
T Consensus 167 ~~p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~-em------------------------y-- 219 (425)
T 2dq3_A 167 IAGWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEE-DL------------------------Y-- 219 (425)
T ss_dssp EETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTGG-GS------------------------C--
T ss_pred ECcHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcChh-hh------------------------e--
Confidence 34667889999999999999999999999999998541 1 11111210 00 0
Q ss_pred cccCcccccccchhHHH-HHHhh------c-cCceEEEccccccCCCCCc--c----ccccchhccceeccCCHHHHHHH
Q 012426 220 DFFEKPAFLTVSGQLNA-ETYAT------A-LSNVYTFGPTFRAENSNTS--R----HLAEFWMIEPELAFADLKDDMAC 285 (464)
Q Consensus 220 ~~f~~~~yL~~Spql~l-qll~~------g-~~rVfeI~~~FR~E~~~t~--r----Hl~EFtmlE~e~a~~~~~dlm~~ 285 (464)
.+.+..+||..-.+-.. .+... . --|+|++|+|||+|.+... + -..||+|+|.+. |..-++..+.
T Consensus 220 ~~~~~~l~LrPt~e~~i~~~~~~~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~-f~~pe~s~~~ 298 (425)
T 2dq3_A 220 KCERDNLYLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVK-IVHPDTSYDE 298 (425)
T ss_dssp BCTTTCCEECSSTHHHHHGGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEE-EECGGGHHHH
T ss_pred EecCCeEEEcCCCcHHHHHHHHhhccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEE-ECCHHHHHHH
Confidence 01134566765444433 33322 1 2489999999999985211 1 234999999976 4443444444
Q ss_pred HHHHH
Q 012426 286 ATAYL 290 (464)
Q Consensus 286 ~e~li 290 (464)
.++++
T Consensus 299 ~~e~i 303 (425)
T 2dq3_A 299 LEKLV 303 (425)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
|
| >1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=2.4e-06 Score=87.91 Aligned_cols=105 Identities=16% Similarity=0.221 Sum_probs=66.0
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC---C--CC-----CCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---E--GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~---e--g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
...-.+++..|.+.+|+.|.+.||.||.||+|.+... . +. .++|.+++.
T Consensus 12 ~p~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~--------------------- 70 (420)
T 1qe0_A 12 LPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDK--------------------- 70 (420)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHH---------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcC---------------------
Confidence 3456789999999999999999999999999998431 1 11 244544211
Q ss_pred CccccccccCcccccccchhHHH-HHHhh-------c-cCceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 214 LIDWSQDFFEKPAFLTVSGQLNA-ETYAT-------A-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql~l-qll~~-------g-~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
-++.++|+.-..... ++++. . --|+|++|+|||+|... .-+.-||+|.|+|.-..+
T Consensus 71 --------~g~~~~Lrp~~t~~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E~~~-~gR~reF~q~~~e~~~~~ 135 (420)
T 1qe0_A 71 --------GDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQ-KGRYRQFNQFGVEAIGAE 135 (420)
T ss_dssp --------HHCCEEECSCSHHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC--------CCEEEEEEEEEESCC
T ss_pred --------CCCEEEeCCCChHHHHHHHHhccccccCCCCeEEEEecCEeecCCCc-CCCcccEEEeeEEEECCC
Confidence 123444543222222 33321 1 24899999999999764 456779999999997765
|
| >1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.8e-05 Score=79.48 Aligned_cols=103 Identities=15% Similarity=0.116 Sum_probs=66.6
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC----------CCCCCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC----------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~----------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
...-.+++..|...+|+.|...||.||.||++..... ....++|...+..
T Consensus 32 lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~-------------------- 91 (344)
T 1z7m_A 32 TLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHE-------------------- 91 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTT--------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCC--------------------
Confidence 4456788999999999999999999999999988421 1233555543211
Q ss_pred CccccccccCcccccccchhHHH---HHHhhc----cCceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 214 LIDWSQDFFEKPAFLTVSGQLNA---ETYATA----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql~l---qll~~g----~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
++.+.|+ |++=- ++++.. --|.|+||+|||+|... .-+.-||+|+++|.-..+
T Consensus 92 ---------g~~l~LR--pd~T~~~aR~~~~~~~~~P~rl~y~g~vfR~e~p~-~gR~REF~Q~g~ei~g~~ 151 (344)
T 1z7m_A 92 ---------GQSITLR--YDFTLPLVRLYSQIKDSTSARYSYFGKIFRKEKRH-KGRSTENYQIGIELFGES 151 (344)
T ss_dssp ---------CCEEEEC--CCSHHHHHHHHHTCCSCCCEEEEEEEECCCCCC--------CCEEEEEEEESSC
T ss_pred ---------CCEEecC--CCCcHHHHHHHHhcCCCCCeEEEEECcEEccCCCC-CCCcceeEEEEEEEEcCC
Confidence 2222232 22222 444332 25899999999999774 457789999999997765
|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=8.9e-06 Score=88.39 Aligned_cols=118 Identities=15% Similarity=0.153 Sum_probs=79.3
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-C--C-----CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-e--g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
....-.+++..|.+.+|+.|.+.||.||.||+|....- + | ..++|.+++.
T Consensus 266 ~lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~~d~---------------------- 323 (645)
T 1nyr_A 266 WLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQL---------------------- 323 (645)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEE----------------------
T ss_pred ECCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCcceeEec----------------------
Confidence 34567899999999999999999999999999998541 1 1 2244433211
Q ss_pred ccccccccC-cccccccchhHHH-HHHhhc------c-CceEEEccccccCCCCCccc----cccchhccceeccCCHHH
Q 012426 215 IDWSQDFFE-KPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKD 281 (464)
Q Consensus 215 ~~~~~~~f~-~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~~t~rH----l~EFtmlE~e~a~~~~~d 281 (464)
-+ +.++|+.-..-.. ++++.. + -|+|+||+|||+|.+. .+| .-||||.|+|. |.+-+.
T Consensus 324 -------~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~~-~~~GL~R~ReF~Q~d~~~-f~~~~~ 394 (645)
T 1nyr_A 324 -------DETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASG-AVSGLQRVRGMTLNDSHI-FVRPDQ 394 (645)
T ss_dssp -------TTTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTT-TCBTTTBCSEEEEEEEEE-EECGGG
T ss_pred -------CCCeEEEeCCCCCHHHHHHHHhhhhhccCCCeEEEEeccEEecCCCc-cccCcceeeeEEEccEEE-EcCHHH
Confidence 13 4455654443333 544432 1 3899999999999983 443 36999999998 666555
Q ss_pred HHHHHHHHHH
Q 012426 282 DMACATAYLQ 291 (464)
Q Consensus 282 lm~~~e~li~ 291 (464)
+.+...+++.
T Consensus 395 ~~d~~~e~i~ 404 (645)
T 1nyr_A 395 IKEEFKRVVN 404 (645)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5554455443
|
| >2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=1.8e-05 Score=84.74 Aligned_cols=117 Identities=17% Similarity=0.164 Sum_probs=79.3
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC---CC-----CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~---eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
....-.+++.+|.+.+|+.|.+.||.||.||+|.+..- .| ..++|.+++.
T Consensus 42 ~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~~d~---------------------- 99 (572)
T 2j3l_A 42 YLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDR---------------------- 99 (572)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEEECT----------------------
T ss_pred eCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheEEEecC----------------------
Confidence 45667899999999999999999999999999998641 01 2345554321
Q ss_pred ccccccccCcccccccchhHHH-HHHhh------cc-CceEEEccccccCCCCCccc----cccchhccceeccCCHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDD 282 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spql~l-qll~~------g~-~rVfeI~~~FR~E~~~t~rH----l~EFtmlE~e~a~~~~~dl 282 (464)
-++.++|+.-.+-.. +++.. .+ -|+|+||+|||+|.. + +| .-||+|.|+|.-..+-.+.
T Consensus 100 -------~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~-~-~~Gl~R~ReF~q~d~~~f~~~~~~~ 170 (572)
T 2j3l_A 100 -------NDRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKR-S-RSGLLRGREFIMKDGYSFHADEASL 170 (572)
T ss_dssp -------TCCEEEECSCCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSS-C-CTGGGSCSEEEEEEEEEEESSHHHH
T ss_pred -------CCCeEEEccccHHHHHHHHHhhccChhhcCHhhheecCeeccCcC-c-ccCccccceeEEeeeEEEcCCHHHH
Confidence 134556644333222 33222 12 389999999999987 2 33 3699999999977766666
Q ss_pred HHHHHHHH
Q 012426 283 MACATAYL 290 (464)
Q Consensus 283 m~~~e~li 290 (464)
...++.++
T Consensus 171 ~~e~~~~~ 178 (572)
T 2j3l_A 171 DQSYRDYE 178 (572)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555433
|
| >1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=2.1e-05 Score=81.36 Aligned_cols=105 Identities=13% Similarity=0.163 Sum_probs=70.8
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC--C--C---CCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC--E--G---AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~--e--g---~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
...-.+++..|.+.+|+.|...||.||.||++.+... . | ..++|.+++.+
T Consensus 16 lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~~----------------------- 72 (434)
T 1wu7_A 16 YPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKG----------------------- 72 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTT-----------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEEECCC-----------------------
Confidence 4456789999999999999999999999999998531 1 1 23456553211
Q ss_pred ccccccCcccccccchhHHH-HHHhhc----c-CceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 217 WSQDFFEKPAFLTVSGQLNA-ETYATA----L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 217 ~~~~~f~~~~yL~~Spql~l-qll~~g----~-~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
++.+-|+.=..... ++++.. + -|.|+|+++||+|... .-+.-||+|.++|.-..+
T Consensus 73 ------g~~l~LrPd~t~~~aR~~~~~~~~~lP~rl~~~g~vfR~erp~-~gR~REF~Q~d~ei~g~~ 133 (434)
T 1wu7_A 73 ------GREVTLIPEATPSTVRMVTSRKDLQRPLRWYSFPKVWRYEEPQ-AGRYREHYQFNADIFGSD 133 (434)
T ss_dssp ------SCEEEECSCSHHHHHHHHTTCTTCCSSEEEEECCEEECCCCSC-SSCCSEEEEEEEEEESCC
T ss_pred ------CCEEEeCCCChHHHHHHHHhcCCCCCCeEEEEEcCeecCCCCC-CCCccceEEeeEEEEcCC
Confidence 22323322111111 333322 1 4899999999999764 335679999999997765
|
| >1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A | Back alignment and structure |
|---|
Probab=97.94 E-value=3.5e-05 Score=80.63 Aligned_cols=122 Identities=15% Similarity=0.097 Sum_probs=81.2
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CC---C-----CCCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CE---G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~e---g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
....-.+++..|.+.+|+.|.+.||.||.||+|.+.. .+ | +.++|.+++...
T Consensus 39 ~lP~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~------------------- 99 (477)
T 1hc7_A 39 VRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGG------------------- 99 (477)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESS-------------------
T ss_pred ECccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCC-------------------
Confidence 3456788999999999999999999999999999865 21 1 234555543210
Q ss_pred CccccccccCcccccccchhH-----HHHHHhh--cc-CceEEEccccccCCCCCc-cccccchhccceeccCCHHHHHH
Q 012426 214 LIDWSQDFFEKPAFLTVSGQL-----NAETYAT--AL-SNVYTFGPTFRAENSNTS-RHLAEFWMIEPELAFADLKDDMA 284 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql-----~lqll~~--g~-~rVfeI~~~FR~E~~~t~-rHl~EFtmlE~e~a~~~~~dlm~ 284 (464)
+-.+.+++|+.-.+- |.+-+.. .+ -|+|+||+|||+|..... --.-||+|.|++..+.+..+...
T Consensus 100 ------~~l~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~~~ad~ 173 (477)
T 1hc7_A 100 ------EELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEE 173 (477)
T ss_dssp ------SEEEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHH
T ss_pred ------ccCCCeEEEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCHHHHHH
Confidence 001345566654442 3322211 22 489999999999954212 12349999999999998777766
Q ss_pred HHHHH
Q 012426 285 CATAY 289 (464)
Q Consensus 285 ~~e~l 289 (464)
.+..+
T Consensus 174 E~~~~ 178 (477)
T 1hc7_A 174 EVRRM 178 (477)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
|
| >3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=1.4e-05 Score=83.30 Aligned_cols=125 Identities=18% Similarity=0.112 Sum_probs=80.3
Q ss_pred cchhhhhHHHHHHHHHHHHh-hhCCcEEEeCceEeecCC-C--CC-----CCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFF-QENGFIWISSPIITASDC-E--GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff-~~~gF~EV~TP~L~~~~~-e--g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
....-.+++..|.+.+|+.+ .+.||.||.||+|..... + |. .++|.+++.+
T Consensus 59 ~lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~-------------------- 118 (460)
T 3uh0_A 59 FLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTD-------------------- 118 (460)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC----------------------
T ss_pred ECccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEEecCC--------------------
Confidence 44567899999999999999 999999999999988431 1 22 2344332110
Q ss_pred CccccccccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCCC---CccccccchhccceeccCCHHHH
Q 012426 214 LIDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSN---TSRHLAEFWMIEPELAFADLKDD 282 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~~---t~rHl~EFtmlE~e~a~~~~~dl 282 (464)
--+..++|+.-.+-.. .+.... + -|+|++|+|||+|... +-.=.-||+|.|++. |.+-++.
T Consensus 119 -------~~~~~l~LrPt~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~-f~~~e~~ 190 (460)
T 3uh0_A 119 -------EEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHI-FCTPSQV 190 (460)
T ss_dssp -----------CEEECSCSHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGH
T ss_pred -------CCCceEEEcccCcHHHHHHHHhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEE-EcCHHHH
Confidence 0134566755444433 444332 1 3799999999999873 211234999999996 6666666
Q ss_pred HHHHHHHHHHHHH
Q 012426 283 MACATAYLQYVVR 295 (464)
Q Consensus 283 m~~~e~li~~i~~ 295 (464)
.+.+++++..+..
T Consensus 191 ~~e~~~~i~~~~~ 203 (460)
T 3uh0_A 191 KSEIFNSLKLIDI 203 (460)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666644433
|
| >1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A | Back alignment and structure |
|---|
Probab=97.89 E-value=2.4e-05 Score=80.41 Aligned_cols=103 Identities=21% Similarity=0.359 Sum_probs=69.7
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC---C-CC------CCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA------GEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~---e-g~------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
...-.+++..|.+.+|+.|.+.||.||.||++.+... . |. .++|.+++.+
T Consensus 13 lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~-------------------- 72 (421)
T 1h4v_B 13 FGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRG-------------------- 72 (421)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCC--------------------
Confidence 3445788999999999999999999999999998531 1 11 2456553211
Q ss_pred CccccccccCcccccccchhHHH---HHHh-hcc------CceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 214 LIDWSQDFFEKPAFLTVSGQLNA---ETYA-TAL------SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql~l---qll~-~g~------~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
++.+-|+ |++-- ++++ ... -|.|+|+++||+|... .-+.-||+|.++|.-..+
T Consensus 73 ---------g~~l~Lr--pd~t~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e~p~-~gR~REf~Q~g~e~~g~~ 135 (421)
T 1h4v_B 73 ---------GRSLTLR--PEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQ-KGRYRQFHQVNYEALGSE 135 (421)
T ss_pred ---------CCEEeeC--CcchHHHHHHHHhccccccCCCeEEEEecCeecCCCCC-CCCcccEEEccEEEECCC
Confidence 2222232 22222 3333 212 4899999999999764 335679999999987654
|
| >1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=2.8e-05 Score=80.07 Aligned_cols=103 Identities=15% Similarity=0.193 Sum_probs=71.3
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC---C-CC------CCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA------GEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~---e-g~------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
...-.+++..|.+.+|+.|...||.||.||++.+... . |. .++|.+++.+
T Consensus 14 lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~-------------------- 73 (423)
T 1htt_A 14 LPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRN-------------------- 73 (423)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTT--------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCC--------------------
Confidence 3456789999999999999999999999999998531 1 22 2577664321
Q ss_pred CccccccccCcccccccchhHHH---HHHh-hc-----cCceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 214 LIDWSQDFFEKPAFLTVSGQLNA---ETYA-TA-----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql~l---qll~-~g-----~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
++.+-|+ |++-- ++++ .. --|.|+|+++||+|... .-+.-||+|.++|.-..+
T Consensus 74 ---------g~~l~Lr--pd~t~~~aR~~~~~~~~~~~P~rl~~~g~vfR~e~p~-~gR~Ref~Q~d~e~~g~~ 135 (423)
T 1htt_A 74 ---------GDSLTLR--PEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQ-KGRYRQFHQLGCEVFGLQ 135 (423)
T ss_dssp ---------SCEEEEC--SCSHHHHHHHHHHHTCSTTCCEEEEEEEEEECCCCCC-SSCCSEEEEEEEEEESCC
T ss_pred ---------CCEEEeC--CCchHHHHHHHHhcccccCCCeEEEEEcCEecCCCCC-CCccceeEEeeEEEECCC
Confidence 2222232 22222 3333 21 24899999999999764 446679999999997765
|
| >1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=3.4e-05 Score=80.39 Aligned_cols=123 Identities=16% Similarity=0.120 Sum_probs=82.2
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-C---CC-----CCCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD-C---EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~---eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
....-.+++..|.+.+|+.|.+.||.||.||+|.+.. . .| ..++|.+++...
T Consensus 33 ~lP~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~------------------- 93 (459)
T 1nj8_A 33 YLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGK------------------- 93 (459)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSS-------------------
T ss_pred ECChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCc-------------------
Confidence 4556788999999999999999999999999999843 1 12 234565543210
Q ss_pred CccccccccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCCCCcc--ccccch-hccceeccCCHHHH
Q 012426 214 LIDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSR--HLAEFW-MIEPELAFADLKDD 282 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~~t~r--Hl~EFt-mlE~e~a~~~~~dl 282 (464)
+-.+.+++|+.-.+-.. ++++.. + -|+|+||+|||+|..+..- -.-||+ |.|++..+.+-.+.
T Consensus 94 ------~~~~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a 167 (459)
T 1nj8_A 94 ------TQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEA 167 (459)
T ss_dssp ------SEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHH
T ss_pred ------ccCCCeeEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHH
Confidence 00134566665444443 544321 2 3899999999999872111 234999 99999988887666
Q ss_pred HHHHHHHH
Q 012426 283 MACATAYL 290 (464)
Q Consensus 283 m~~~e~li 290 (464)
....++++
T Consensus 168 ~~e~~~~i 175 (459)
T 1nj8_A 168 ENQVKEAI 175 (459)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65544444
|
| >3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.8e-05 Score=78.87 Aligned_cols=103 Identities=14% Similarity=0.089 Sum_probs=65.6
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC------CCC-CCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGA-GEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~------eg~-~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
...-.+++..|...+|+.|...||.||.||++..... .-. .++|.+.+.+
T Consensus 33 lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~~D~~----------------------- 89 (373)
T 3rac_A 33 YPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRLFDGG----------------------- 89 (373)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCBCCCCS-----------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCCccchhceEEEECCC-----------------------
Confidence 4455788999999999999999999999999987531 112 3455442211
Q ss_pred ccccccCcccccccchhHHH---HHHhh------ccCceEEEccccccCCC------CCccccccchhccceeccCC
Q 012426 217 WSQDFFEKPAFLTVSGQLNA---ETYAT------ALSNVYTFGPTFRAENS------NTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 217 ~~~~~f~~~~yL~~Spql~l---qll~~------g~~rVfeI~~~FR~E~~------~t~rHl~EFtmlE~e~a~~~ 278 (464)
++.+-|+ |++=- ++++. .--|.|+||+|||+|.. . .-+.-||+|+++|.-..+
T Consensus 90 ------g~~l~LR--pd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~g~~~~~~-~gR~ReF~Q~g~ei~g~~ 157 (373)
T 3rac_A 90 ------GDAVALR--PEMTPSIARMAAPRVAAGRTPIRWCYCERVYRRTDDPASLSWA-SGKAAESTQVGIERIGEE 157 (373)
T ss_dssp ------SSCEEEC--SSSHHHHHHHHHHHHHTTCCCCEEEEEEEEEECC-------------CEEEEEEEEEECSSC
T ss_pred ------CCEEEEC--CcCHHHHHHHHHhccccCCCCeEEEEEcceEccCCCccccccc-CCccceeEEeeeEEECCC
Confidence 2222222 22211 33322 23689999999999976 3 345779999999986654
|
| >1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=3.7e-05 Score=80.94 Aligned_cols=123 Identities=15% Similarity=0.113 Sum_probs=83.4
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CCC--------CCCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CEG--------AGEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~eg--------~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
....-.+++..|.+.+|+.|.+ ||.||.||+|.+.. ..+ ..++|.+++...
T Consensus 66 ~~P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~------------------- 125 (501)
T 1nj1_A 66 WMPHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGL------------------- 125 (501)
T ss_dssp ECHHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETT-------------------
T ss_pred ECccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCC-------------------
Confidence 3456788999999999999999 99999999999854 221 245666543110
Q ss_pred CccccccccCcccccccchhHHH-HHHhh------cc-CceEEEccccccCCCCCcc--ccccch-hccceeccCCHHHH
Q 012426 214 LIDWSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNTSR--HLAEFW-MIEPELAFADLKDD 282 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql~l-qll~~------g~-~rVfeI~~~FR~E~~~t~r--Hl~EFt-mlE~e~a~~~~~dl 282 (464)
+-.+.+++|+.-.+-.. ++++. .+ -|+|++|+|||+|..++.= =.-||+ |.|++..+.+-++.
T Consensus 126 ------~~~~~~l~LrPt~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a 199 (501)
T 1nj1_A 126 ------SKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEA 199 (501)
T ss_dssp ------EEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHH
T ss_pred ------cccCCeeEEccCCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHH
Confidence 00124556765554444 44332 12 3899999999999863211 224999 99999989887777
Q ss_pred HHHHHHHHH
Q 012426 283 MACATAYLQ 291 (464)
Q Consensus 283 m~~~e~li~ 291 (464)
...+++++.
T Consensus 200 ~~e~~~~l~ 208 (501)
T 1nj1_A 200 EEQVERAVE 208 (501)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766655553
|
| >3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} | Back alignment and structure |
|---|
Probab=97.81 E-value=4e-05 Score=80.00 Aligned_cols=135 Identities=16% Similarity=0.210 Sum_probs=73.8
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-----CCCCCC-CceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD-----CEGAGE-QFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-----~eg~~~-~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (464)
...-.+.+..+...+|+.|...||.||.||++.... ++...+ +|.+.+..+.-.+.+ . ..
T Consensus 22 lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G~~~ke~m~~~~d~~~~g~~~~-----~---------~~ 87 (465)
T 3net_A 22 LPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAE-----K---------DK 87 (465)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGGCC--CBEEEEEEEC------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccCCCCccceEEEecccccccccc-----c---------cc
Confidence 445678899999999999999999999999995421 233345 777654310000000 0 00
Q ss_pred cccccCcccccccchhHHH-HHHhhc------cCceEEEccccccCCCCCccccccchhccceeccCC--HH----HHHH
Q 012426 218 SQDFFEKPAFLTVSGQLNA-ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD--LK----DDMA 284 (464)
Q Consensus 218 ~~~~f~~~~yL~~Spql~l-qll~~g------~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~--~~----dlm~ 284 (464)
+.++-++.+-|+.=.-... ++++.. --|.|++|||||.|... .-+.-||+|+++|.-..+ .. +++.
T Consensus 88 ~~~~~g~~l~LRpd~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~-~gr~Ref~Q~g~ei~G~~~~~a~~DaEvi~ 166 (465)
T 3net_A 88 SGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAK-DGRFRQFRQCDIDVVGREKLSLLYDAQMPA 166 (465)
T ss_dssp ------CCEEECSCSHHHHHHHHHHHGGGSCSSEEEEECCEEECBC-------CCEEEEEEEEEECSSCCCHHHHHHHHH
T ss_pred ccCCCCCEEEeCCCChHHHHHHHHhcccccCCCeEEEEeccEEecCCCC-CCCcceeEEeeEEEECCCCccchhhHHHHH
Confidence 0001123333331111111 333321 23999999999999874 456679999999987653 22 3555
Q ss_pred HHHHHHHHH
Q 012426 285 CATAYLQYV 293 (464)
Q Consensus 285 ~~e~li~~i 293 (464)
++-++++.+
T Consensus 167 l~~~~l~~l 175 (465)
T 3net_A 167 IITEIFEAV 175 (465)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 555555443
|
| >4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.80 E-value=4e-05 Score=80.09 Aligned_cols=107 Identities=14% Similarity=0.204 Sum_probs=69.6
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC---C-CC------CCCceeeecCCCcccccCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA------GEQFCVTTLIPSSREAAESPVDAIPKTKD 212 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~---e-g~------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~ 212 (464)
....-.+++..|...+|+.|.+.||.||.||+|..... . |. .++|.+.+..
T Consensus 41 ~lP~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~------------------- 101 (467)
T 4e51_A 41 ILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDAL------------------- 101 (467)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTT-------------------
T ss_pred eCHHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCC-------------------
Confidence 34556789999999999999999999999999988532 1 21 2466543211
Q ss_pred CCccccccccCcccccccchhHHH-HHHhh-c-----cCceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 213 GLIDWSQDFFEKPAFLTVSGQLNA-ETYAT-A-----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 213 ~~~~~~~~~f~~~~yL~~Spql~l-qll~~-g-----~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
-++.+.|+.-..... ++++. . --|.|++|+|||+|... .-+.-||+|+++|.-..+
T Consensus 102 ---------~g~~l~LRPd~t~~~ar~~~~~~~~~~lP~r~~~~g~vfR~E~~~-~gR~ReF~Q~d~ei~g~~ 164 (467)
T 4e51_A 102 ---------NGENLTLRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQ-RGRYRQFHQVGVEALGFA 164 (467)
T ss_dssp ---------TCCEEEECSCSHHHHHHHHHHTTTTTTSCEEEEEEEEEECCCCC----CCSEEEEEEEEEETCC
T ss_pred ---------CCCEEEeCcccHHHHHHHHHHcccccCCCEEEEEEccEEccCCCC-CCCcCceEEEEEEEEeCC
Confidence 022333432222222 43332 1 24899999999999875 345679999999986553
|
| >3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.79 E-value=8.3e-05 Score=76.07 Aligned_cols=103 Identities=14% Similarity=0.104 Sum_probs=68.2
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC------CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (464)
...-.+++..|...+|+.|...||.||.||++..... ....++|.+.+.+
T Consensus 20 lP~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f~D~~------------------------ 75 (400)
T 3od1_A 20 LPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKLLDQQ------------------------ 75 (400)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEEECTT------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccceEEEECCC------------------------
Confidence 4456788999999999999999999999999976542 1123455443211
Q ss_pred cccccCcccccccchhHHH---HHHhhc------cCceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 218 SQDFFEKPAFLTVSGQLNA---ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 218 ~~~~f~~~~yL~~Spql~l---qll~~g------~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
++.+-|+ |++=- ++++.. --|.|++|+|||.|... .-+.-||+|+++|.-..+
T Consensus 76 -----g~~l~LR--pd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~-~gR~Ref~Q~g~ei~G~~ 137 (400)
T 3od1_A 76 -----GNTLVLR--PDMTAPIARLVASSLKDRAYPLRLAYQSNVYRAQQNE-GGKPAEFEQLGVELIGDG 137 (400)
T ss_dssp -----SCEEEEC--SCSHHHHHHHHHHHCSSSCSCEEEEEEEEEECCCC----CCCSEEEEEEEEEESCC
T ss_pred -----CCEEEEC--CCCHHHHHHHHHhhcccCCCCeEEEEEcCEEeCCCCC-CCCCCccEEeEEEEECCC
Confidence 2222222 32221 333332 24899999999999874 446779999999987654
|
| >3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A | Back alignment and structure |
|---|
Probab=97.74 E-value=8.8e-05 Score=77.18 Aligned_cols=103 Identities=14% Similarity=0.113 Sum_probs=67.5
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-C-C-C----CCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E-G-A----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-e-g-~----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
...-.+++..|...+|+.|...||.||.||++..... . + + .++|.+.+.+
T Consensus 39 lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~~----------------------- 95 (456)
T 3lc0_A 39 PPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKG----------------------- 95 (456)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECSS-----------------------
T ss_pred CHhHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEEcCC-----------------------
Confidence 4455788999999999999999999999999998642 1 1 1 2355543211
Q ss_pred ccccccCcccccccchhHHH---HHHhhc------cCceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 217 WSQDFFEKPAFLTVSGQLNA---ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 217 ~~~~~f~~~~yL~~Spql~l---qll~~g------~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
++.+-| -|++=- ++++.. --|.|+||+|||.|... .-+.-||+|+++|.-..+
T Consensus 96 ------g~~l~L--Rpd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~-~gR~ReF~Q~g~ei~G~~ 157 (456)
T 3lc0_A 96 ------GHRVAL--RPEMTPSLARLLLGKGRSLLLPAKWYSIPQCWRYEAIT-RGRRREHYQWNMDIVGVK 157 (456)
T ss_dssp ------SCEEEE--CSCSHHHHHHHHHHSCTTCCSSEEEEECCEEECCCC------CCEEEEEEEEEESCC
T ss_pred ------CCEEec--CCcCHHHHHHHHHhcCcccCCCEEEEEeccEEecCCCC-CCCccceEEEEEEEEcCC
Confidence 222222 233222 433332 24899999999999874 446789999999987653
|
| >1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A | Back alignment and structure |
|---|
Probab=97.73 E-value=7.7e-05 Score=76.77 Aligned_cols=123 Identities=19% Similarity=0.250 Sum_probs=77.6
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-C--CCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-e--g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (464)
......+++.+|.+.+++.+.+.||.||.||+|..... . |...-|.- .. +
T Consensus 161 ~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~-em------------------------y-- 213 (421)
T 1ses_A 161 LKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRD-QV------------------------W-- 213 (421)
T ss_dssp EETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGG-GS------------------------C--
T ss_pred ECcHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCch-hc------------------------E--
Confidence 34567889999999999999999999999999998531 1 22222210 00 0
Q ss_pred cccCcccccccchhHHH-HHHhh------cc-CceEEEccccccCCCCCc--c----ccccchhccceeccCC-HHHHHH
Q 012426 220 DFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNTS--R----HLAEFWMIEPELAFAD-LKDDMA 284 (464)
Q Consensus 220 ~~f~~~~yL~~Spql~l-qll~~------g~-~rVfeI~~~FR~E~~~t~--r----Hl~EFtmlE~e~a~~~-~~dlm~ 284 (464)
.+-+..+||..-.+-.+ .++.. .+ -|+|++|+|||+|.+... + -.-||+|+|++..... .++..+
T Consensus 214 ~~~d~~l~L~Pt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~ 293 (421)
T 1ses_A 214 AIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDR 293 (421)
T ss_dssp BBTTSSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHH
T ss_pred EEcCCeEEEeecCcHHHHHHhcccccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHH
Confidence 00124556766555544 33322 12 389999999999963111 1 2359999999875444 466666
Q ss_pred HHHHHHHH
Q 012426 285 CATAYLQY 292 (464)
Q Consensus 285 ~~e~li~~ 292 (464)
..++++..
T Consensus 294 ~~~e~~~~ 301 (421)
T 1ses_A 294 AFQELLEN 301 (421)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666543
|
| >1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00015 Score=75.99 Aligned_cols=121 Identities=15% Similarity=0.114 Sum_probs=81.8
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-C--C-----CC-CCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AG-EQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-e--g-----~~-~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
.....++..+|.+.+++.+.+.||.||.||.|..... + | .. ++|.++..
T Consensus 215 ~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~---------------------- 272 (501)
T 1wle_A 215 RGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPS---------------------- 272 (501)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTT----------------------
T ss_pred cChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecC----------------------
Confidence 4556899999999999999999999999999998542 1 1 12 44543210
Q ss_pred ccccccccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCC---C--CccccccchhccceeccCCH-H
Q 012426 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENS---N--TSRHLAEFWMIEPELAFADL-K 280 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~---~--t~rHl~EFtmlE~e~a~~~~-~ 280 (464)
-+.++||.-..+..+ .+...- + =|+|++++|||+|.. + +--=.-||+|.|.+.--.+. +
T Consensus 273 -------~~~~l~L~PTaE~~~~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e 345 (501)
T 1wle_A 273 -------RFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLE 345 (501)
T ss_dssp -------TSSSCEECSSHHHHHHHHHTTEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHH
T ss_pred -------CCCeEEECCcCcHHHHHHHhhccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHH
Confidence 024567776666555 343321 2 489999999999965 1 11112489999999855443 6
Q ss_pred HHHHHHHHHHHHH
Q 012426 281 DDMACATAYLQYV 293 (464)
Q Consensus 281 dlm~~~e~li~~i 293 (464)
+..+..++++...
T Consensus 346 ~s~~~~e~~l~~~ 358 (501)
T 1wle_A 346 QSSELLEEFLSLQ 358 (501)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777543
|
| >3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=3.4e-05 Score=80.25 Aligned_cols=117 Identities=14% Similarity=0.175 Sum_probs=77.8
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CCCCC-------CCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CEGAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~eg~~-------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
.....+++.++++.+++.+.++||.||.||.|.... .++.+ ++|.++..
T Consensus 204 ~p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~----------------------- 260 (484)
T 3lss_A 204 KGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGD----------------------- 260 (484)
T ss_dssp EHHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESS-----------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeecC-----------------------
Confidence 355689999999999999999999999999999854 23222 44544210
Q ss_pred cccccccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCCCCc------cccccchhccceeccCCHHH
Q 012426 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTS------RHLAEFWMIEPELAFADLKD 281 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~~t~------rHl~EFtmlE~e~a~~~~~d 281 (464)
+..+||....+..+ .+.... + =|+|++++|||+|..... --.-||+|.|.+. |..-++
T Consensus 261 -------~~~~~L~PTaE~~l~~l~~~~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~-f~~pe~ 332 (484)
T 3lss_A 261 -------GDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFV-VCSPRQ 332 (484)
T ss_dssp -------SSCEEECSSTHHHHHHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEE-EECSST
T ss_pred -------CcceEEeccCcHHHHHHHhccccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEE-EeCcch
Confidence 34567877766666 333221 1 379999999999973111 1223999999985 543333
Q ss_pred --HHHHHHHHHH
Q 012426 282 --DMACATAYLQ 291 (464)
Q Consensus 282 --lm~~~e~li~ 291 (464)
..+..++++.
T Consensus 333 ~~s~~e~e~~~~ 344 (484)
T 3lss_A 333 EESWRHLEDMIT 344 (484)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 5555555553
|
| >2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A | Back alignment and structure |
|---|
Probab=97.69 E-value=4.8e-05 Score=79.03 Aligned_cols=122 Identities=15% Similarity=0.173 Sum_probs=78.5
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CC--CCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CE--GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~e--g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (464)
......+++..|.+.+++.+.+.||.||.||+|.... .+ |...-|.- .. +
T Consensus 188 ~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~-em------------------------y-- 240 (455)
T 2dq0_A 188 LLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFED-VI------------------------Y-- 240 (455)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHH-TC------------------------C--
T ss_pred ECCHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChH-hh------------------------C--
Confidence 3456788899999999999999999999999999854 22 22222210 00 0
Q ss_pred cccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCCCCc------cccccchhccceeccCCHHHHHHH
Q 012426 220 DFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTS------RHLAEFWMIEPELAFADLKDDMAC 285 (464)
Q Consensus 220 ~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~~t~------rHl~EFtmlE~e~a~~~~~dlm~~ 285 (464)
.+-+..+||....+..+ .+.... + -|+|++|+|||+|.+... .-.-||+|.|++ .|.+-++..+.
T Consensus 241 ~~~d~~l~LrPt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~-~f~~pe~s~~~ 319 (455)
T 2dq0_A 241 KVEDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQF-VYSRPEESWEW 319 (455)
T ss_dssp BBTTSSCEECSSTHHHHHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEE-EEECTTTHHHH
T ss_pred eecCCcEEEcCcCcHHHHHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEE-EecCHHHHHHH
Confidence 01134567776665554 433321 2 389999999999986211 023499999998 46655666666
Q ss_pred HHHHHHH
Q 012426 286 ATAYLQY 292 (464)
Q Consensus 286 ~e~li~~ 292 (464)
.++++..
T Consensus 320 ~~e~l~~ 326 (455)
T 2dq0_A 320 HEKIIRN 326 (455)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
|
| >3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=97.68 E-value=8.1e-05 Score=78.36 Aligned_cols=125 Identities=17% Similarity=0.132 Sum_probs=86.2
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CC---C-----CCCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CE---G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~e---g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
....-.+++..|.+.+|+.|.+.||.||.||+|.+.. .+ | ..++|.+++...
T Consensus 50 ~lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~------------------- 110 (518)
T 3ial_A 50 FRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGL------------------- 110 (518)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETT-------------------
T ss_pred ECccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCC-------------------
Confidence 3566789999999999999999999999999998854 21 1 235666543210
Q ss_pred CccccccccCcccccccchhHHH-HHHhh------cc-CceEEEccccccCCCCCc--cccccchhccceeccCCHHHHH
Q 012426 214 LIDWSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFADLKDDM 283 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql~l-qll~~------g~-~rVfeI~~~FR~E~~~t~--rHl~EFtmlE~e~a~~~~~dlm 283 (464)
.=.+.+++|+.-.+-.. .++.. .+ -|+|++++|||+|...+. .-.-||+|.|.+...++.++..
T Consensus 111 ------~~~~~~l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~ 184 (518)
T 3ial_A 111 ------QPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAV 184 (518)
T ss_dssp ------EEEEEEEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHH
T ss_pred ------cccCcceeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHH
Confidence 00134566765554433 44332 22 389999999999943221 1335999999999778988888
Q ss_pred HHHHHHHHH
Q 012426 284 ACATAYLQY 292 (464)
Q Consensus 284 ~~~e~li~~ 292 (464)
+.++.++..
T Consensus 185 ~e~~~~l~~ 193 (518)
T 3ial_A 185 SQLSDYWKV 193 (518)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877743
|
| >3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A | Back alignment and structure |
|---|
Probab=97.67 E-value=5e-05 Score=78.97 Aligned_cols=118 Identities=14% Similarity=0.166 Sum_probs=78.8
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CCC-------CCCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CEG-------AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~eg-------~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
.....+++.++++.+++.+.++||.||.||.|.... .++ ..++|.++..
T Consensus 181 ~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~----------------------- 237 (485)
T 3qne_A 181 RNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDG----------------------- 237 (485)
T ss_dssp CTHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEET-----------------------
T ss_pred ecHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCC-----------------------
Confidence 356789999999999999999999999999999854 222 1345554310
Q ss_pred cccccccCcccccccchhHHH-HHHhhc-c--------CceEEEccccccCCCC------CccccccchhccceeccCCH
Q 012426 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA-L--------SNVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADL 279 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~Spql~l-qll~~g-~--------~rVfeI~~~FR~E~~~------t~rHl~EFtmlE~e~a~~~~ 279 (464)
+.+.||.-..+.-+ -++..- + =|+|++++|||+|... +---.-||+|.|.+. |..-
T Consensus 238 -------~~~~~LipTaE~pl~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~p 309 (485)
T 3qne_A 238 -------EDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTEP 309 (485)
T ss_dssp -------TEEEEECSSTHHHHHHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EECG
T ss_pred -------CCeEEEeccccHHHHHHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeCH
Confidence 23456765555555 233221 1 2699999999999742 111233999999996 5655
Q ss_pred HHHHHHHHHHHHH
Q 012426 280 KDDMACATAYLQY 292 (464)
Q Consensus 280 ~dlm~~~e~li~~ 292 (464)
++..+..++|+..
T Consensus 310 e~s~~e~e~ml~~ 322 (485)
T 3qne_A 310 EKSWEEFDRMIGC 322 (485)
T ss_dssp GGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666543
|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=4.8e-05 Score=82.53 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=78.1
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-C--C-----CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-e--g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
....-.+++..|.+.+|+.+.+.||.||.||+|.+..- + | ..++|. ++.
T Consensus 266 ~lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~-~d~---------------------- 322 (642)
T 1qf6_A 266 WHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSS---------------------- 322 (642)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEE-EEE----------------------
T ss_pred ECCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCcccccccccee-eec----------------------
Confidence 45667899999999999999999999999999998641 1 1 123443 211
Q ss_pred ccccccccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCCCCccc----cccchhccceeccCCHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDD 282 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~~t~rH----l~EFtmlE~e~a~~~~~dl 282 (464)
-++.++|+.-.+-.. ++.... + -|+|+||+|||+|.+ +.+| .-||+|.|++. |.+-+++
T Consensus 323 -------~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~-g~~~GL~R~ReF~q~d~~~-f~~~~~~ 393 (642)
T 1qf6_A 323 -------ENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPS-GSLHGLMRVRGFTQDDAHI-FCTEEQI 393 (642)
T ss_dssp -------TTEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEE-EECGGGH
T ss_pred -------CCceEEecCCCCHHHHHHHHhhhhhccccCeEEEEeccEEecCCC-ccccCCceeeeEEEccEEE-EcCHHHH
Confidence 023455654443333 444322 2 389999999999987 2332 45999999998 6665555
Q ss_pred HHHHHHHHH
Q 012426 283 MACATAYLQ 291 (464)
Q Consensus 283 m~~~e~li~ 291 (464)
....++++.
T Consensus 394 ~~e~~~~i~ 402 (642)
T 1qf6_A 394 RDEVNGCIR 402 (642)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444443
|
| >4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00012 Score=77.20 Aligned_cols=125 Identities=16% Similarity=0.100 Sum_probs=82.5
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CC---CCC-----CCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CE---GAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~e---g~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
....-.+++..|.+.+++.+.+.||.||.||+|.+.. .+ |.. ++|.+++...
T Consensus 56 ~lP~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~------------------- 116 (519)
T 4hvc_A 56 LRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGK------------------- 116 (519)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETT-------------------
T ss_pred ECccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCC-------------------
Confidence 3456688999999999999999999999999998753 12 222 2343432110
Q ss_pred CccccccccCcccccccchhHHH-HHHhh------cc-CceEEEccccccCCCCCcc--ccccchhccceeccCCHHHHH
Q 012426 214 LIDWSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNTSR--HLAEFWMIEPELAFADLKDDM 283 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql~l-qll~~------g~-~rVfeI~~~FR~E~~~t~r--Hl~EFtmlE~e~a~~~~~dlm 283 (464)
.+ .+.+++|+.-.+-.. .+... .+ -|+|++|+|||+|...+.= =.-||+|.|.+..|++.++..
T Consensus 117 -----~~-l~e~l~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~ 190 (519)
T 4hvc_A 117 -----TE-LAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAA 190 (519)
T ss_dssp -----EE-EEEEEEECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHH
T ss_pred -----cc-cccceeeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHH
Confidence 00 023456654443333 43332 22 3899999999999542210 124999999999999988888
Q ss_pred HHHHHHHHH
Q 012426 284 ACATAYLQY 292 (464)
Q Consensus 284 ~~~e~li~~ 292 (464)
+.++.++..
T Consensus 191 ~E~~~~l~~ 199 (519)
T 4hvc_A 191 EEVLQILDL 199 (519)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877776643
|
| >3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0001 Score=77.09 Aligned_cols=117 Identities=16% Similarity=0.176 Sum_probs=74.1
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC---CCC-----CCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~---eg~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
....-.+++..|.+.+|+.|.+.||.||.||+|.+... +|+ .++|.+. .
T Consensus 44 ~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~d-~---------------------- 100 (471)
T 3a32_A 44 FSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFD-I---------------------- 100 (471)
T ss_dssp BCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEEE-E----------------------
T ss_pred ECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEEe-c----------------------
Confidence 34556889999999999999999999999999998541 222 2344331 1
Q ss_pred ccccccccCcccccccchhHHH-HHHh-----h----cc-CceEEEccccccCCCC--Cc-cccccchhccceeccCCHH
Q 012426 215 IDWSQDFFEKPAFLTVSGQLNA-ETYA-----T----AL-SNVYTFGPTFRAENSN--TS-RHLAEFWMIEPELAFADLK 280 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spql~l-qll~-----~----g~-~rVfeI~~~FR~E~~~--t~-rHl~EFtmlE~e~a~~~~~ 280 (464)
-+..++|+.-.+... ++.+ . .+ -|+|+||+|||+|... .. --.-||+|.|+|.-. +-+
T Consensus 101 -------~~~~l~LRP~~t~~i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~-~~~ 172 (471)
T 3a32_A 101 -------EGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIV-PGG 172 (471)
T ss_dssp -------TTEEEEECSCSHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEE-EGG
T ss_pred -------CCcEEEEccccHHHHHHHHHhhhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEc-ChH
Confidence 134455544333322 3221 1 23 4899999999999763 11 024599999999854 333
Q ss_pred HHHHHHHHHH
Q 012426 281 DDMACATAYL 290 (464)
Q Consensus 281 dlm~~~e~li 290 (464)
...+.+.+++
T Consensus 173 ~~~de~~e~i 182 (471)
T 3a32_A 173 RVIDVVYDVF 182 (471)
T ss_dssp GHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444434444
|
| >3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A | Back alignment and structure |
|---|
Probab=97.56 E-value=5.8e-05 Score=77.45 Aligned_cols=104 Identities=10% Similarity=0.140 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhhhC--------CcEEEeC-ceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccc
Q 012426 150 VRNALAYATHKFFQEN--------GFIWISS-PIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (464)
Q Consensus 150 ~rs~i~~~~r~ff~~~--------gF~EV~T-P~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (464)
--+.+...+|++|... ||.|+.+ |.+.+... ....++...+| ++++ .+..
T Consensus 49 Pl~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~-NFd~L~~p~dH------paR~--------------~~Dt 107 (415)
T 3cmq_A 49 PLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQ-NFDSLLIPADH------PSRK--------------KGDN 107 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHH-HTGGGTCCTTC------GGGC--------------GGGS
T ss_pred HHHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHH-HHHHhCCCCCC------Cccc--------------ccce
Confidence 3466677888888776 9999999 77765322 12222211222 2221 0112
Q ss_pred -ccCcccccccchhHHH-HHHhhccCceEEEccccccCCCCCccccccchhccceec
Q 012426 221 -FFEKPAFLTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELA 275 (464)
Q Consensus 221 -~f~~~~yL~~Spql~l-qll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a 275 (464)
|.+...-|+++.=-+. ++|..+..|+|++|.|||.+..| ..|.|+|+|+|.-..
T Consensus 108 fyi~~~~vLRThts~~~~~~l~~~~~k~~~~G~VyR~D~~d-a~h~n~fhQ~egv~l 163 (415)
T 3cmq_A 108 YYLNRTHMLRAHTSAHQWDLLHAGLDAFLVVGDVYRRDQID-SQHYPIFHQLEAVRL 163 (415)
T ss_dssp CBSSSSEEECSSGGGGHHHHHHTTCSEEEEEEEEECCCCCB-TTBCSEEEEEEEEEE
T ss_pred EEecCCeEEcCCCcHHHHHHHHHCCCCEEEeeeEEeccchh-hhhhHHhcCCCcEEE
Confidence 2344445644332233 66766778999999999999886 899999999996444
|
| >4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00031 Score=73.00 Aligned_cols=104 Identities=16% Similarity=0.162 Sum_probs=65.9
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC------CCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~------~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
....-.+++..|.+.+|+.|...||.||.||++.... ++...++|...+.+
T Consensus 23 ~lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~D~~----------------------- 79 (464)
T 4g84_A 23 YSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQG----------------------- 79 (464)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCCBBCCCS-----------------------
T ss_pred cCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeEEEECCC-----------------------
Confidence 3556678999999999999999999999999997642 12223455443211
Q ss_pred ccccccCcccccccchhHH---HHHHhhc---cCceEEEccccccCCCCC-ccccccchhccceeccC
Q 012426 217 WSQDFFEKPAFLTVSGQLN---AETYATA---LSNVYTFGPTFRAENSNT-SRHLAEFWMIEPELAFA 277 (464)
Q Consensus 217 ~~~~~f~~~~yL~~Spql~---lqll~~g---~~rVfeI~~~FR~E~~~t-~rHl~EFtmlE~e~a~~ 277 (464)
|+.+-|+ |++= .|+++.. --|.|+||++||.|.... .-+.-||+|+++|.-..
T Consensus 80 ------g~~l~LR--Pd~T~~~aR~~~~~~~~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~ 139 (464)
T 4g84_A 80 ------GELLSLR--YDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGN 139 (464)
T ss_dssp ------SCCEEEC--SCSHHHHHHHHHHTTCSCEEEEEEEEEECCCC------CCSEEEEEEEEEESC
T ss_pred ------CCEEEeC--CcCcHHHHHHHHhcCCCCceeEEEecceeccCCccccCccceeeecceeccCC
Confidence 2233333 3321 1433321 247899999999996521 23566999999998653
|
| >3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00025 Score=74.92 Aligned_cols=117 Identities=18% Similarity=0.285 Sum_probs=79.5
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-C--CC-----CCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-e--g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
.....+++.++++.+++.+.++||.||.||.|..... + |. .++|.++
T Consensus 271 ~p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~------------------------- 325 (536)
T 3err_A 271 KGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA------------------------- 325 (536)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEET-------------------------
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEec-------------------------
Confidence 3557899999999999999999999999999998542 2 21 1233221
Q ss_pred cccccccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCCCCc------cccccchhccceeccCC--H
Q 012426 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTS------RHLAEFWMIEPELAFAD--L 279 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~~t~------rHl~EFtmlE~e~a~~~--~ 279 (464)
+..+||....+..+ .+.... + -|+|++++|||+|.+.+. --.-||+|.|.+. |.. .
T Consensus 326 -------~~~~~L~PT~E~~~~~l~~~~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~-f~~pe~ 397 (536)
T 3err_A 326 -------ETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYV-LTEASL 397 (536)
T ss_dssp -------TTTEEECSSTHHHHHHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEE-EECSCH
T ss_pred -------CCCEEEccCCcHHHHHHHhcccccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEE-EECCch
Confidence 24567766666555 333221 2 379999999999973111 2345999999995 543 3
Q ss_pred HHHHHHHHHHHHHH
Q 012426 280 KDDMACATAYLQYV 293 (464)
Q Consensus 280 ~dlm~~~e~li~~i 293 (464)
++..+..++++...
T Consensus 398 e~s~~~~e~~~~~~ 411 (536)
T 3err_A 398 EASDRAFQELLENA 411 (536)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 47777777776543
|
| >4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0004 Score=73.35 Aligned_cols=104 Identities=16% Similarity=0.162 Sum_probs=65.5
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC------CCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~------~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
....-.+++..|.+.+|+.|...||.||.||++.... ++....+|...+.+
T Consensus 76 ~lP~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D~~----------------------- 132 (517)
T 4g85_A 76 YSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQG----------------------- 132 (517)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCBBCCTT-----------------------
T ss_pred cCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEEEECCC-----------------------
Confidence 4566789999999999999999999999999997642 12223345432211
Q ss_pred ccccccCcccccccchhHH---HHHHhhc---cCceEEEccccccCCCCC-ccccccchhccceeccC
Q 012426 217 WSQDFFEKPAFLTVSGQLN---AETYATA---LSNVYTFGPTFRAENSNT-SRHLAEFWMIEPELAFA 277 (464)
Q Consensus 217 ~~~~~f~~~~yL~~Spql~---lqll~~g---~~rVfeI~~~FR~E~~~t-~rHl~EFtmlE~e~a~~ 277 (464)
|+.+-|+ |++= .|+++.. --|.|+||++||.|.... .=+.-||+|+++|.-..
T Consensus 133 ------g~~l~LR--Pd~T~~~aR~~~~~~~~p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~ 192 (517)
T 4g85_A 133 ------GELLSLR--YDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGN 192 (517)
T ss_dssp ------SCCEEEC--SCSHHHHHHHHHHTTCSCEEEEEEEEEECCCC-------CCEEEEEEEEEESC
T ss_pred ------CCEEEeC--CcCcHHHHHHHHhCCCCCceeEEEeceEeccCcccccCccceeeeeceeccCC
Confidence 2222232 3321 1433322 247899999999996521 12557999999998653
|
| >2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00011 Score=77.20 Aligned_cols=156 Identities=14% Similarity=0.096 Sum_probs=83.6
Q ss_pred cchhhhhHHHHHHHHHHH-HhhhCCcEEEeCceEeecCC-C--CC-----CCCceeeecCCCcccccCCCCCCCC-CCCC
Q 012426 143 TFGAVARVRNALAYATHK-FFQENGFIWISSPIITASDC-E--GA-----GEQFCVTTLIPSSREAAESPVDAIP-KTKD 212 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~-ff~~~gF~EV~TP~L~~~~~-e--g~-----~~~F~vt~~~~~~~~~~~~~~~~~~-~~~~ 212 (464)
....-.+++..|.+.+++ ++.+.||.||.||+|.+... + |. .++|.++....+..+...+-+.... ..+.
T Consensus 226 ~~P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~ 305 (522)
T 2cja_A 226 HGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEV 305 (522)
T ss_dssp ECHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSC
T ss_pred ECchHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhccccc
Confidence 345668899999999996 68899999999999998431 1 11 2334332100000000000000000 0000
Q ss_pred CCccccccccCcccccccchhHHH-HHHhh------cc-CceEE-EccccccCCC--CCccccccchhccceeccCCHHH
Q 012426 213 GLIDWSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYT-FGPTFRAENS--NTSRHLAEFWMIEPELAFADLKD 281 (464)
Q Consensus 213 ~~~~~~~~~f~~~~yL~~Spql~l-qll~~------g~-~rVfe-I~~~FR~E~~--~t~rHl~EFtmlE~e~a~~~~~d 281 (464)
+..+++..--+..+||+...+... .+... .+ -|+|+ +|+|||+|.. .+---.-||+|.|++. |.+-++
T Consensus 306 ~~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~Epgs~~GL~R~REF~q~E~~~-F~~pe~ 384 (522)
T 2cja_A 306 PTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVW-IGTKEE 384 (522)
T ss_dssp CHHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSSCCCTTSCSEEEEEEEEE-EEEHHH
T ss_pred cccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCCCCCCCCCeEeEEEEEeeEEE-EeChHH
Confidence 000000000134556665444332 22221 12 27999 9999999943 1112345999999998 778888
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 012426 282 DMACATAYLQYVVRYILD 299 (464)
Q Consensus 282 lm~~~e~li~~i~~~~~~ 299 (464)
..+..++++......++.
T Consensus 385 s~ee~ee~i~~~~~~~l~ 402 (522)
T 2cja_A 385 VLKCAEELHDRYMHIFND 402 (522)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888444444443
|
| >2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00019 Score=75.34 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=42.7
Q ss_pred CceEEEccccccCCC-CCccccccchhccceeccC--CHHHHHHHHHHHHHHH
Q 012426 244 SNVYTFGPTFRAENS-NTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 293 (464)
Q Consensus 244 ~rVfeI~~~FR~E~~-~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i 293 (464)
-|+|++|+|||++.. + ..|.+||+|++.-+++. |+.|+...++.+++.+
T Consensus 218 vrlFEiGrVFr~D~~~d-~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~L 269 (549)
T 2du7_A 218 LKLFSIDRCFRREQRED-RSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQF 269 (549)
T ss_dssp EEEEEEEEECCCCSSCS-SSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGG
T ss_pred eEEEEEeeEEecCCccc-CcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 379999999998765 4 56999999999999886 7999999999998865
|
| >3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00036 Score=73.16 Aligned_cols=126 Identities=16% Similarity=0.178 Sum_probs=75.1
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-C--C-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-e--g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
.....+++.+|++.+++.+.++||.||.||.|..... . | ..++|.++.... ..
T Consensus 197 ~p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~---------------~~---- 257 (522)
T 3vbb_A 197 KGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGS---------------EK---- 257 (522)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC-------------------------
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCc---------------cc----
Confidence 4456899999999999999999999999999987432 1 1 234555432100 00
Q ss_pred cccccccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCCCCc------cccccchhccceeccCCHH-
Q 012426 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTS------RHLAEFWMIEPELAFADLK- 280 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~~t~------rHl~EFtmlE~e~a~~~~~- 280 (464)
..+--+..+||....+..+ .+.... + =|+|++++|||+|.+... --.-||+|.|.+. |..-+
T Consensus 258 --~~~~~~~~l~L~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~-f~~pe~ 334 (522)
T 3vbb_A 258 --SDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFV-YSSPHD 334 (522)
T ss_dssp --------CCEEECSSTHHHHHTTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEE-EECSST
T ss_pred --cccccCcceeEcccCcHHHHHHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEE-EeCCCh
Confidence 0000123567776655554 222211 1 379999999999975111 1224999999985 44322
Q ss_pred -HHHHHHHHHHH
Q 012426 281 -DDMACATAYLQ 291 (464)
Q Consensus 281 -dlm~~~e~li~ 291 (464)
+..+..++++.
T Consensus 335 e~s~~e~e~ml~ 346 (522)
T 3vbb_A 335 NKSWEMFEEMIT 346 (522)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 25555555553
|
| >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00012 Score=77.58 Aligned_cols=49 Identities=22% Similarity=0.345 Sum_probs=42.8
Q ss_pred CceEEEccccccCCC-CCccccccchhccceeccC--CHHHHHHHHHHHHHHH
Q 012426 244 SNVYTFGPTFRAENS-NTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 293 (464)
Q Consensus 244 ~rVfeI~~~FR~E~~-~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i 293 (464)
-|+|++|+|||++.. + .+|.+||+||+.-++.. |+.|+...+|.+++.+
T Consensus 225 vRLFEIGrVFR~D~~lD-ath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (648)
T 2odr_B 225 FKLFSIDRCFRREQKED-KSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (648)
T ss_dssp EEEEEEEEEECCCSCCC-SSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEEeeEEecCcccc-ccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 478999999998765 4 67999999999999885 7999999999998866
|
| >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00013 Score=77.51 Aligned_cols=49 Identities=22% Similarity=0.345 Sum_probs=42.8
Q ss_pred CceEEEccccccCCC-CCccccccchhccceeccC--CHHHHHHHHHHHHHHH
Q 012426 244 SNVYTFGPTFRAENS-NTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 293 (464)
Q Consensus 244 ~rVfeI~~~FR~E~~-~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i 293 (464)
-|+|++|+|||++.. + .+|.+||+||+.-++.. |+.|+...+|.+++.+
T Consensus 225 vRLFEIGrVFR~D~~lD-ath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (665)
T 2odr_A 225 FKLFSIDRCFRREQKED-KSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (665)
T ss_dssp EEEEEEEEEECCCSCCC-SSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEEeeEEecCcccc-ccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 478999999998765 4 67999999999999885 7999999999998866
|
| >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.25 E-value=3.5e-05 Score=81.85 Aligned_cols=49 Identities=22% Similarity=0.345 Sum_probs=42.8
Q ss_pred CceEEEccccccCCC-CCccccccchhccceeccC--CHHHHHHHHHHHHHHH
Q 012426 244 SNVYTFGPTFRAENS-NTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 293 (464)
Q Consensus 244 ~rVfeI~~~FR~E~~-~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i 293 (464)
-|+|+||+|||++.. + .+|.+||+||+.-++.. |+.|+...+|.+++.+
T Consensus 225 vRLFEIGrVFR~D~~lD-ath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (685)
T 2odr_D 225 FKLFSIDRCFRREQKED-KSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (685)
T ss_dssp EEEEEEEEEECCCSCCC-SSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEeccEEecCcccc-ccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 478999999998765 4 67999999999999885 7999999999998866
|
| >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00016 Score=77.06 Aligned_cols=49 Identities=22% Similarity=0.345 Sum_probs=42.8
Q ss_pred CceEEEccccccCCC-CCccccccchhccceeccC--CHHHHHHHHHHHHHHH
Q 012426 244 SNVYTFGPTFRAENS-NTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 293 (464)
Q Consensus 244 ~rVfeI~~~FR~E~~-~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i 293 (464)
-|+|++|+|||++.. + .+|.+||+||+.-++.. |+.|+...+|.+++.+
T Consensus 225 vRLFEIGrVFR~D~~lD-ath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (701)
T 2odr_C 225 FKLFSIDRCFRREQKED-KSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (701)
T ss_dssp EEEEEEEEEECCCSCCC-SSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEEeeEEccCcccc-ccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 478999999998765 4 67999999999999885 7999999999998866
|
| >1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0012 Score=69.57 Aligned_cols=36 Identities=11% Similarity=-0.017 Sum_probs=32.2
Q ss_pred chhhhhHHHHHHHHHHHHhh--hCCcEEEeCceEeecC
Q 012426 144 FGAVARVRNALAYATHKFFQ--ENGFIWISSPIITASD 179 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~--~~gF~EV~TP~L~~~~ 179 (464)
...-.+++..|.+.+|+.|. +.||.||.||+|.+..
T Consensus 35 ~P~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~ 72 (505)
T 1ati_A 35 GPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRL 72 (505)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETT
T ss_pred CccHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHH
Confidence 44568899999999999999 8999999999999865
|
| >2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00031 Score=73.77 Aligned_cols=50 Identities=20% Similarity=0.305 Sum_probs=42.6
Q ss_pred CceEEEccccccCCCCCccccccchhccceeccC--CHHHHHHHHHHHHHHH
Q 012426 244 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 293 (464)
Q Consensus 244 ~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i 293 (464)
-|+|+||+|||.+......|.+||+|+++.+.+. ++.|+...++.++..+
T Consensus 206 vrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~~L 257 (534)
T 2du3_A 206 IKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQF 257 (534)
T ss_dssp EEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGGG
T ss_pred eeEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3799999999987651267999999999999885 6999999999998765
|
| >3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0012 Score=65.45 Aligned_cols=141 Identities=19% Similarity=0.178 Sum_probs=85.3
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CCCCC-------CCceeeecCCC-cccccCCCCCCCCCCCCCCc
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD-CEGAG-------EQFCVTTLIPS-SREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~eg~~-------~~F~vt~~~~~-~~~~~~~~~~~~~~~~~~~~ 215 (464)
...-+++..|.+.+++ ..+.||.||.||.|.... .++.+ .+|.+...... ..|.. .+. ....+ .
T Consensus 61 g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~--ll~---~~~~~-~ 133 (346)
T 3mf2_A 61 ALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINA--AVS---RFDAG-G 133 (346)
T ss_dssp HHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHH--HHH---HHHTT-S
T ss_pred chHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhh--hhh---hhccc-c
Confidence 3456788888899999 888999999999999854 33322 34443211000 00000 000 00000 0
Q ss_pred cccccccCcccccccchhHHH-HHHhh-c-c----CceEEEccccccCCCCCccccccchhccceeccCCHHHHHHHHHH
Q 012426 216 DWSQDFFEKPAFLTVSGQLNA-ETYAT-A-L----SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATA 288 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~Spql~l-qll~~-g-~----~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~ 288 (464)
++....-+..+||....+..+ .++.. | + -|+-.+++|||.|.+.+--.+-+|+|.|+-. |.+-++..+..++
T Consensus 134 ~~~~~l~~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~-~~tpEqs~~e~e~ 212 (346)
T 3mf2_A 134 DWTTSLSPADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVC-IGTPDDVSDFRER 212 (346)
T ss_dssp CGGGGEEEEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEE-EESHHHHHHHHHH
T ss_pred ccccccCCCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEE-EeCHHHHHHHHHH
Confidence 011111123567777776666 44442 2 1 3566799999999976666777999999865 5688898888888
Q ss_pred HHHHH
Q 012426 289 YLQYV 293 (464)
Q Consensus 289 li~~i 293 (464)
++..+
T Consensus 213 l~~~a 217 (346)
T 3mf2_A 213 WMVRA 217 (346)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88654
|
| >3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B | Back alignment and structure |
|---|
Probab=96.84 E-value=0.013 Score=50.12 Aligned_cols=99 Identities=12% Similarity=0.111 Sum_probs=66.7
Q ss_pred cceecccccCCCCCC-----CCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccch-hhhhcCCCCCC
Q 012426 10 KKLKIVDVKGGPNEG-----LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITTG 83 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~-----~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~-~~~~~~~l~~g 83 (464)
..++|++|++....+ ....=..|++.|+|.++....+..-+.|.|+|| ..|.+....+...- ..... +..|
T Consensus 7 ~PvtIkqil~a~~~~~~f~i~g~~i~~V~iVG~V~~~~~~~~~~~~~ldD~TG-~~I~~~~W~~~~~~~~~~~~--~~~g 83 (132)
T 3kdf_D 7 VPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTA-APMDVRQWVDTDDTSSENTV--VPPE 83 (132)
T ss_dssp EECCHHHHHTCEESSSCEEETTEECCEEEEEEEEEEEEECSSEEEEEEECSSS-SCEEEEEEC---------CC--CCTT
T ss_pred eeEEHHHHhhCccCCCcEEECCEEEEEEEEEEEEEEEEEcCCeEEEEEECCCC-CEEEEEEEccCCCccccccc--ccCC
Confidence 346788887653110 112235799999999999988877888999998 14999887543211 11344 9999
Q ss_pred cEEEEEEEEEeCCCCCceEEEEEeeEEEEec
Q 012426 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (464)
Q Consensus 84 ~~V~V~G~v~~~~~~~~~~el~~~~i~vls~ 114 (464)
+.|.|.|.++.-+ +...|.+..+..+..
T Consensus 84 ~yVrV~G~l~~f~---g~~qi~~~~ir~v~d 111 (132)
T 3kdf_D 84 TYVKVAGHLRSFQ---NKKSLVAFKIMPLED 111 (132)
T ss_dssp CEEEEEEEEEEET---TEEEEEEEEEEECSS
T ss_pred CEEEEEEEEEeEC---CEEEEEEEEEEEcCC
Confidence 9999999998754 236788877766544
|
| >3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.012 Score=52.19 Aligned_cols=79 Identities=15% Similarity=0.264 Sum_probs=62.3
Q ss_pred CEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccc-hhh-hhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEe
Q 012426 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (464)
Q Consensus 30 ~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~-~~~-~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~ 107 (464)
+.|+|.|.|.+++...+...+.|.|+||. .|.|++..+... -.. -.. +..|++|.|.|.+..-.. ..+|.++
T Consensus 48 ~~V~IvGiVv~~~~~~~~~~ytIDD~TG~-~I~cv~w~~~~~~~~~~~~~--l~~G~~VrV~G~v~~fr~---~rqI~~~ 121 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIYEGKHVLTVDDCSGM-VLRVVFIIQDDFSMSKRAIS--MSPGNVVCVFGKINSFRS---EVELIAQ 121 (159)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEECSSSC-EEEEEEEGGGCHHHHHHHTT--CCTTCEEEEEEEEECSSS---SCEEEEE
T ss_pred EEEEEEEEEEEEEEeCCEEEEEEecCCCC-eEEEEEEccCCCCccccccc--CCCCCEEEEEEEEEeeCC---EEEEEEE
Confidence 67999999999999888888999999983 699998765421 111 224 899999999999976543 3699999
Q ss_pred eEEEEec
Q 012426 108 KIVLVGK 114 (464)
Q Consensus 108 ~i~vls~ 114 (464)
++.++..
T Consensus 122 ~i~~v~d 128 (159)
T 3kf6_A 122 SFEELRD 128 (159)
T ss_dssp EEEEECS
T ss_pred EEEECCC
Confidence 9988874
|
| >2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0016 Score=70.99 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=31.5
Q ss_pred cchhhhhHHHHHHHHHHHHhh-hCCcEEEeCceEeec
Q 012426 143 TFGAVARVRNALAYATHKFFQ-ENGFIWISSPIITAS 178 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~-~~gF~EV~TP~L~~~ 178 (464)
....-.+++..|.+.+|+.|. ..||.||.||+|++.
T Consensus 96 ~lP~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~ 132 (693)
T 2zt5_A 96 FGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPE 132 (693)
T ss_dssp ECHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEH
T ss_pred ECCChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccH
Confidence 345668999999999999998 569999999999984
|
| >4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.014 Score=50.27 Aligned_cols=99 Identities=11% Similarity=0.090 Sum_probs=67.9
Q ss_pred ccceecccccCCCCC-------CCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccch--hhhhcCC
Q 012426 9 RKKLKIVDVKGGPNE-------GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGL 79 (464)
Q Consensus 9 ~~~~~i~~l~~~~~~-------~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~--~~~~~~~ 79 (464)
.+.++|++|++.... -....=..|++.|+|.+++......-+.|.|+||. |.+....+.... .....
T Consensus 9 l~PvtIkqil~a~~~~~~~~f~i~g~~i~~V~iVG~V~~~~~~~~~~~~~ldD~TG~--I~~~~W~~~~~~~~~~~~~-- 84 (136)
T 4gop_B 9 LRPVTIRQILNAEQPHPDAEFILDGAELGQLTFVAVVRNISRNATNVAYSVEDGTGQ--IEVRQWLDSSSDDSSKASE-- 84 (136)
T ss_dssp EEECCHHHHHHCBCCSSSCCCBSSSSBCCEEEEEEEEEEEEECSSEEEEEEECSSCE--EEEEEECC--------CCS--
T ss_pred EEeEEHHHHhhccccCCCCcEEECCEEEEEEEEEEEEEEEEecCCeEEEEEECCCCC--EEEEEecccCCcccccccc--
Confidence 345778888764211 01123367999999999999887777889999984 999887543221 12345
Q ss_pred CCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEec
Q 012426 80 ITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (464)
Q Consensus 80 l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~ 114 (464)
+..|+.|.|.|.+..-+ +...|.+..+..+..
T Consensus 85 ~~~g~yVrV~G~v~~f~---g~~qi~~~~ir~v~d 116 (136)
T 4gop_B 85 IRNNVYVRVLGTLKSFQ---NRRSISSGHMRPVID 116 (136)
T ss_dssp CCTTCEEEEEEEEEEET---TEEEEEESEEEECSS
T ss_pred cCCCCEEEEEEEEEEeC---CEEEEEEEEEEECCC
Confidence 99999999999997654 336778877765543
|
| >1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0029 Score=61.23 Aligned_cols=85 Identities=9% Similarity=0.018 Sum_probs=52.6
Q ss_pred HHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccc--cchhHH
Q 012426 158 THKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT--VSGQLN 235 (464)
Q Consensus 158 ~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~--~Spql~ 235 (464)
+++.|...||.||.||++.....-.. +.| .+.. ++.+-|+ ..|.+.
T Consensus 12 ~~~~~~~~Gy~eI~tP~le~~~l~~~-d~f--~d~~-----------------------------g~~l~LRpd~T~~~a 59 (275)
T 1usy_A 12 FYSKATKKGFSPFFVPALEKAEEPAG-NFF--LDRK-----------------------------GNLFSIREDFTKTVL 59 (275)
T ss_dssp HHHHHHHTTCEECCCCSEEECSSCCS-SCE--EETT-----------------------------SCEEEECCCHHHHHH
T ss_pred HHHHHHHCCCEEecCccccchhhhcc-ccc--CCCC-----------------------------CCEEEeCCcChHHHH
Confidence 34999999999999999998653221 244 1111 1111111 011222
Q ss_pred H-HHHh-h-ccCceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 236 A-ETYA-T-ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 236 l-qll~-~-g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
. ++.- . .--|.|++|+|||.|.+. . -||+|+++|.-..+
T Consensus 60 ~~~~~~~~~~p~R~~y~g~vfR~e~~~-~---Ref~Q~g~ei~g~~ 101 (275)
T 1usy_A 60 NHRKRYSPDSQIKVWYADFVYRYSGSD-L---VAEYQLGLEKVPRN 101 (275)
T ss_dssp HHHTTCTTCCCEEEECCEEEEEEETTE-E---EEEEEEEEEEESCC
T ss_pred HHHhhcCCCCceEEEEeceEEecCCCC-C---CeeeEeCEEEecCC
Confidence 1 1111 1 225899999999999874 3 69999999986654
|
| >3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.055 Score=44.35 Aligned_cols=87 Identities=13% Similarity=0.221 Sum_probs=65.1
Q ss_pred ceecccccCCCCCCCCCCCCEEEEEEEEeeeec-------C---CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCC
Q 012426 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA-------Q---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI 80 (464)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~-------~---g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l 80 (464)
..+|++|.. +..|.|.|+|.++-. . +++.=+.|.|.+| .|.+++-.+... + . +
T Consensus 5 ~~~I~dL~~---------~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG--~IrvtlW~~~a~---~-~--l 67 (105)
T 3dm3_A 5 TYNIGELSP---------GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETG--SIRVTLWDNLTD---I-D--V 67 (105)
T ss_dssp EECGGGCCS---------SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTE--EEEEEEEGGGGG---S-C--C
T ss_pred ceEHHHCCC---------CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC--cEEEEEECcccc---c-c--c
Confidence 356666654 268999999987642 2 2355588999997 499987754321 1 4 9
Q ss_pred CCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCC
Q 012426 81 TTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSD 116 (464)
Q Consensus 81 ~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~ 116 (464)
.+||+|.+.|.++.... +++||++.+...+.+|.
T Consensus 68 ~~Gdvv~i~g~vk~~~~--g~~eL~~g~~~~i~~~~ 101 (105)
T 3dm3_A 68 GRGDYVRVRGYIREGYY--GGLECTANYVEILKKGE 101 (105)
T ss_dssp CTTCEEEEEEEEEECTT--SSEEEEEEEEEEEECCC
T ss_pred CCCCEEEEEEEEEEccC--CCEEEEeCCceEEEecc
Confidence 99999999999988754 35999999999999986
|
| >3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0092 Score=61.63 Aligned_cols=110 Identities=13% Similarity=-0.033 Sum_probs=61.1
Q ss_pred hhhhhHHHHHHHHHHHHh-hhCC-cEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc
Q 012426 145 GAVARVRNALAYATHKFF-QENG-FIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff-~~~g-F~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 222 (464)
..-..+|+.|++..|.-| .++| +.||.||+...-...|+-+ .|
T Consensus 101 P~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~~~~SGH~d-----------------------------------~~ 145 (459)
T 3ikl_A 101 PLGVELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPGDS-----------------------------------AF 145 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCSCEECCCCSBCCSCCCSSCS-----------------------------------CC
T ss_pred CcHHHHHHHHHHHHHHHHhhccCceEeeccccccccccCcchh-----------------------------------hh
Confidence 344688999998555544 4355 8889999943322222222 22
Q ss_pred Cccccccc-chhHHHHHH----hh---cc-CceEEEccccccCC--CCCcccc----ccchhccceeccCCHHHHHHHHH
Q 012426 223 EKPAFLTV-SGQLNAETY----AT---AL-SNVYTFGPTFRAEN--SNTSRHL----AEFWMIEPELAFADLKDDMACAT 287 (464)
Q Consensus 223 ~~~~yL~~-Spql~lqll----~~---g~-~rVfeI~~~FR~E~--~~t~rHl----~EFtmlE~e~a~~~~~dlm~~~e 287 (464)
. +||+. .-|-++... -. .+ =++.+||+|||+|. + +.+|- -||+|.|.+. |++-++..+..+
T Consensus 146 ~--~~LRPeTaqg~~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~-~~~~GL~RvrEFtq~E~~~-F~~Pe~~~e~~~ 221 (459)
T 3ikl_A 146 R--GGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTK-QIRNGVKSIGEKTEASLVW-FTPPRTSNQWLD 221 (459)
T ss_dssp T--TB-CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC-----------CCCCEEEEEEEEE-EECGGGHHHHHH
T ss_pred c--ceECCCCChhHHHHHhhhhhhccccCCeEEEEEeeeeecccccc-cCCCCcccccceeeeeEEE-EeChhHHHHHHH
Confidence 2 56664 333333211 11 12 26899999999995 3 34442 5999999984 666555555555
Q ss_pred HHHHHH
Q 012426 288 AYLQYV 293 (464)
Q Consensus 288 ~li~~i 293 (464)
.++..+
T Consensus 222 ~~~~~~ 227 (459)
T 3ikl_A 222 FWLRHR 227 (459)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
|
| >3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.075 Score=42.82 Aligned_cols=76 Identities=16% Similarity=0.205 Sum_probs=56.1
Q ss_pred CCEEEEEEEEeeee---c----CC---CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCC
Q 012426 29 GLMIVVAGWVRTLR---A----QS---SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGS 98 (464)
Q Consensus 29 ~~~V~v~GwV~~iR---~----~g---~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~ 98 (464)
+..|.|.|+|.++- . .| ++.=+.|.|.|| .|.+++-.+... . . +.+||+|.|.|.+..-.
T Consensus 11 g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG--~I~~tlW~~~~~---~-~--i~~Gdvv~i~g~v~~~~-- 80 (97)
T 3e0e_A 11 NLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTG--SIRGTLWNELAD---F-E--VKKGDIAEVSGYVKQGY-- 80 (97)
T ss_dssp TEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTE--EEEEEEEGGGGG---C-C--CCTTCEEEEEEEEEEC---
T ss_pred CCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC--cEEEEEECCccc---c-c--cCCCCEEEEEEEEEEcC--
Confidence 36899999998763 2 22 466688999997 499887654221 1 4 99999999999987654
Q ss_pred CceEEEEEeeEEEEecC
Q 012426 99 KQKVELKVNKIVLVGKS 115 (464)
Q Consensus 99 ~~~~el~~~~i~vls~~ 115 (464)
+.+||.+.+...+-+|
T Consensus 81 -~~~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 81 -SGLEISVDNIGIIEKS 96 (97)
T ss_dssp --CEEEEEEEEEEEECC
T ss_pred -CeEEEEECCCcEEEEC
Confidence 3599999998888776
|
| >1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0069 Score=62.80 Aligned_cols=140 Identities=10% Similarity=0.015 Sum_probs=74.1
Q ss_pred hhhhhHHHHHHHHHHHH-h-hhCCcEEEeCceEeecC-CCCC--CCCceeeecCCCcccccCCCCCCCCCCCCCCccccc
Q 012426 145 GAVARVRNALAYATHKF-F-QENGFIWISSPIITASD-CEGA--GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~f-f-~~~gF~EV~TP~L~~~~-~eg~--~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (464)
..-.+++..|.+.+++. + .+.|+.||.||+|.+.. .++. +..|...+... +. -.+.. + .+.-...-.
T Consensus 59 P~G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e-----~~-~~~g~-~-~eem~~~~~ 130 (454)
T 1g5h_A 59 PLGVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIRE-----IL-QDREP-S-KEQLVAFLE 130 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHH-----HH-CC----C-HHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHH-----Hh-hccCC-C-HHHHHHHHH
Confidence 44578999999988876 4 58999999999999865 2221 11110100000 00 00000 0 000000000
Q ss_pred cccCccccccc--chhHHH---HHHhh---cc-CceEEEccccc---cCCCCCccc----cccchhccceeccCCHHHHH
Q 012426 220 DFFEKPAFLTV--SGQLNA---ETYAT---AL-SNVYTFGPTFR---AENSNTSRH----LAEFWMIEPELAFADLKDDM 283 (464)
Q Consensus 220 ~~f~~~~yL~~--Spql~l---qll~~---g~-~rVfeI~~~FR---~E~~~t~rH----l~EFtmlE~e~a~~~~~dlm 283 (464)
++++.++||+. +|-.+. +.+-. -+ =+++|||+||| ||-+ ++| .-||+|.|++. |++.++..
T Consensus 131 ~~~~~~~~LRPeta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s--~~~Gl~R~REF~q~E~~~-F~~pe~~~ 207 (454)
T 1g5h_A 131 NLLKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQ--TPSSVTRVGEKTEASLVW-FTPTRTSS 207 (454)
T ss_dssp HHHHHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC-----------CEEEEEEEEEEEE-EECHHHHH
T ss_pred hhcCcceeecccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCccccc--CCCCccccCceehhheEE-EeCHhhHH
Confidence 12355677774 322222 22211 23 37999999999 6865 243 46999999995 77887777
Q ss_pred HHHHHHHHHHHH
Q 012426 284 ACATAYLQYVVR 295 (464)
Q Consensus 284 ~~~e~li~~i~~ 295 (464)
+..+.++.....
T Consensus 208 e~~~~~~~~~~~ 219 (454)
T 1g5h_A 208 QWLDFWLRHRLL 219 (454)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 776666654433
|
| >2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.044 Score=45.39 Aligned_cols=81 Identities=16% Similarity=0.169 Sum_probs=58.4
Q ss_pred CCCEEEEEEEEeee---e----cC---CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCC
Q 012426 28 VGLMIVVAGWVRTL---R----AQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG 97 (464)
Q Consensus 28 ~~~~V~v~GwV~~i---R----~~---g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~ 97 (464)
.|+.+.+.|.|.++ | +. +++..+.|.|+|| .|.+.+-.+.. ..... +..|++|.|.|.+.+..-
T Consensus 15 ~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG--~I~~t~w~~~~--~~~~~--l~~G~vv~i~g~~v~~~f 88 (115)
T 2k50_A 15 EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTG--ELRAVFWTENI--KLLKK--FREGDVIRIKDVNIRGGF 88 (115)
T ss_dssp TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTE--EEEEEEETTGG--GGGGT--CCTTSEEEEEEEEECCCS
T ss_pred CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCC--eEEEEEeCchh--hhhhc--CCCCCEEEEEeeEEcccc
Confidence 46789999999988 2 22 4689999999997 59998876532 12345 999999999999866422
Q ss_pred CCceEEEEEeeEEEEecC
Q 012426 98 SKQKVELKVNKIVLVGKS 115 (464)
Q Consensus 98 ~~~~~el~~~~i~vls~~ 115 (464)
. +.++|.+.+...+.++
T Consensus 89 ~-g~~qL~~~~~~~i~~~ 105 (115)
T 2k50_A 89 G-GRKEAHLMPRSTVEVL 105 (115)
T ss_dssp S-SSCEEEECTTCCEEEE
T ss_pred C-CeEEEEECCCceEEEC
Confidence 1 3478888766555554
|
| >2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.031 Score=61.89 Aligned_cols=117 Identities=15% Similarity=0.075 Sum_probs=76.5
Q ss_pred hhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCC----CCC-CceeeecCCCcccccCCCCCCCCCCCCCCccccccc
Q 012426 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEG----AGE-QFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (464)
Q Consensus 147 ~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg----~~~-~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (464)
......++.+.+|+.|...||.|+.|..+++...-. ..+ .+.+ .|| .+.+
T Consensus 491 ~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~~v~L--~NP----------------------is~e- 545 (795)
T 2rhq_B 491 ELTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISL--LMP----------------------MSEA- 545 (795)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTCSSCCCCEEC--SSC----------------------SCTT-
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEecCCccCHHHHHhhCCCCCceEEE--cCC----------------------Cchh-
Confidence 344567788999999999999999999998864211 111 1222 222 0111
Q ss_pred cCcccccccchhHHH-HHHhh----cc--CceEEEccccccCCCCCccccccchhccceecc-------------CCHHH
Q 012426 222 FEKPAFLTVSGQLNA-ETYAT----AL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF-------------ADLKD 281 (464)
Q Consensus 222 f~~~~yL~~Spql~l-qll~~----g~--~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~-------------~~~~d 281 (464)
-..|++|-=--+ +.+.. +. -|+||||+|||.+..+ ..| +||++|.+-++. .|+.|
T Consensus 546 ---~svLRtsLlpgLL~~l~~N~~r~~~~vrlFEiG~Vf~~d~~~-~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~d 620 (795)
T 2rhq_B 546 ---HATLRQSLLPHLIEATAYNVARKNKDVRLYEIGRVFFGNGEG-ELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFI 620 (795)
T ss_dssp ---SSEECSCSHHHHHHHHHHHHHTTCCCEEEEEEEEEEECCCTT-SCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHH
T ss_pred ---hhhhhhccHHHHHHHHHHHhcCCCCCeEEEEEeeEEecCCcc-cCc-chhhEEEEEEEeccccccccCCCCCCCHHH
Confidence 123554443333 44432 33 3899999999975432 256 899999876655 58999
Q ss_pred HHHHHHHHHHHH
Q 012426 282 DMACATAYLQYV 293 (464)
Q Consensus 282 lm~~~e~li~~i 293 (464)
+...+|.++..+
T Consensus 621 lKg~le~ll~~l 632 (795)
T 2rhq_B 621 AKGVVDRVAEKL 632 (795)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999998876
|
| >3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.035 Score=59.43 Aligned_cols=115 Identities=10% Similarity=0.027 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHhhhCCcEEEeCceEeecCC--C------CCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccc
Q 012426 149 RVRNALAYATHKFFQENGFIWISSPIITASDC--E------GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (464)
Q Consensus 149 ~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~--e------g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (464)
....++.+.+|+.|...||.|+.|+.+++... + ...+.+.+ .|| .+.+
T Consensus 391 ~~~~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L--~NP----------------------is~e 446 (589)
T 3l4g_B 391 FPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHI--SNP----------------------KTAE 446 (589)
T ss_dssp CHHHHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBB--SSC----------------------SSGG
T ss_pred CHHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEE--cCC----------------------Cchh
Confidence 34566789999999999999999999998531 1 11122222 222 0111
Q ss_pred ccCcccccccchhHHH-HHHhhc-----cCceEEEccccccCCCCCccccccchhccceeccC--CHHHHHHHHHHHHHH
Q 012426 221 FFEKPAFLTVSGQLNA-ETYATA-----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQY 292 (464)
Q Consensus 221 ~f~~~~yL~~Spql~l-qll~~g-----~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~ 292 (464)
+ ..|++|-=--+ +.+... =-|+||+|+|||.+.. ..+|.+|+.++.+-++.. ++.++-..++.++..
T Consensus 447 ~----svmRtsLlpgLL~~l~~N~~~~~~vrlFEiG~Vf~~d~~-~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~ 521 (589)
T 3l4g_B 447 F----QVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSN-TDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQL 521 (589)
T ss_dssp G----SEECSCSHHHHHHHHHHTTTSCSCEEEEEEEEEEEECTT-STTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHH
T ss_pred H----hHHHHHHHHHHHHHHHHHhcCCCceEEEEeeeEEecCCc-cccCCccccEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 1 23555533333 544322 1379999999998765 367889999999877654 588887777766644
|
| >3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.029 Score=52.02 Aligned_cols=114 Identities=16% Similarity=0.170 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhhhCCcEEEeCceEeecCC-CCCC-----CCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcc
Q 012426 152 NALAYATHKFFQENGFIWISSPIITASDC-EGAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKP 225 (464)
Q Consensus 152 s~i~~~~r~ff~~~gF~EV~TP~L~~~~~-eg~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 225 (464)
.++.+.+|+.|...||.||-|-.+++... +... +. |.-.|| .+.+ -
T Consensus 7 ~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~~~~~--v~l~NP----------------------ls~e----~ 58 (213)
T 3ig2_A 7 NKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNL--VMLLNP----------------------LSAD----L 58 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSCGGGC--EEBSSG----------------------GGCS----C
T ss_pred HHHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccCcCCe--EEEeCC----------------------cchh----H
Confidence 45678999999999999999999998542 1110 11 111222 0111 1
Q ss_pred cccccchhHHH-HHHhh----ccC--ceEEEccccccCCCCCc-----cccccchhccceecc-------------CCHH
Q 012426 226 AFLTVSGQLNA-ETYAT----ALS--NVYTFGPTFRAENSNTS-----RHLAEFWMIEPELAF-------------ADLK 280 (464)
Q Consensus 226 ~yL~~Spql~l-qll~~----g~~--rVfeI~~~FR~E~~~t~-----rHl~EFtmlE~e~a~-------------~~~~ 280 (464)
-.|++|-=--+ +.+.. +.. |+||||+||+.++.+.. .+..|..+|-+-++. .|+.
T Consensus 59 ~vmRtsLlpgLL~~~~~N~~r~~~~v~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~ 138 (213)
T 3ig2_A 59 NCMRQTLLFGGLESIAHNANRKNADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVY 138 (213)
T ss_dssp CEECSCSHHHHHHHHHHC------CCEEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHhcCCCCCeeEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHH
Confidence 24666543333 54443 343 79999999998753211 234577777776655 3677
Q ss_pred HHHHHHHHHHHHH
Q 012426 281 DDMACATAYLQYV 293 (464)
Q Consensus 281 dlm~~~e~li~~i 293 (464)
|+...+|.++..+
T Consensus 139 dlKg~ve~ll~~l 151 (213)
T 3ig2_A 139 ELKAYVENIFKRL 151 (213)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 8887777777554
|
| >2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.12 Score=49.74 Aligned_cols=100 Identities=12% Similarity=0.102 Sum_probs=67.8
Q ss_pred ccceecccccCCCCCC-----CCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccch-hhhhcCCCCC
Q 012426 9 RKKLKIVDVKGGPNEG-----LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITT 82 (464)
Q Consensus 9 ~~~~~i~~l~~~~~~~-----~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~-~~~~~~~l~~ 82 (464)
.+.++|++|++..... ....=..|++.|+|.++...+...-+.|.|+|| ..|.+.+..+...- ..... +..
T Consensus 46 l~PvtIkqil~a~~~d~~f~i~g~~i~~V~ivG~V~~i~~~~~~~~~~L~D~TG-~~I~~k~W~~~~~~~~~~~~--~~~ 122 (270)
T 2pi2_A 46 IVPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTA-APMDVRQWVDTDDTSSENTV--VPP 122 (270)
T ss_dssp CEECCHHHHHHCEEETTEEEETTEEESEEEEEEEEEEEEECSSEEEEEEECSSS-SCEEEEEECC-------CCC--CCT
T ss_pred eEEEEHHHHhcCccCCCcEEECCEEEEEEEEEEEEEEEEeccceEEEEEECCCC-CEEEEEEEcCcCcccchhhc--CCC
Confidence 3567889988752110 011124799999999998888777788999997 14888887543211 11234 999
Q ss_pred CcEEEEEEEEEeCCCCCceEEEEEeeEEEEec
Q 012426 83 GASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (464)
Q Consensus 83 g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~ 114 (464)
|++|.|.|.+..=+ +...|.+..|..+..
T Consensus 123 G~yVrV~G~v~~f~---g~~qi~i~~ir~v~d 151 (270)
T 2pi2_A 123 ETYVKVAGHLRSFQ---NKKSLVAFKIMPLED 151 (270)
T ss_dssp TCEEEEEEEEEEET---TEEEEEEEEEEECSC
T ss_pred CCEEEEEEEEEecC---CeeEEEEEEEEecCC
Confidence 99999999998754 236778877766554
|
| >1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.068 Score=44.09 Aligned_cols=84 Identities=18% Similarity=0.165 Sum_probs=59.7
Q ss_pred eecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEE
Q 012426 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (464)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~ 91 (464)
++++++... ..+..|++.|.|.+.-..- - ...+|++| .|+|-++.+. +....+++++-|.+.|+
T Consensus 26 ~TV~~a~~~------~Dd~~V~L~G~Iv~~~~~d--~-Y~F~D~TG--~I~VeId~~~-----w~g~~v~p~~~Vri~Ge 89 (109)
T 1nnx_A 26 TTVESAKSL------RDDTWVTLRGNIVERISDD--L-YVFKDASG--TINVDIDHKR-----WNGVTVTPKDTVEIQGE 89 (109)
T ss_dssp CCHHHHTTS------CSSEEEEEEEEEEEEEETT--E-EEEEETTE--EEEEECCGGG-----STTCCCCTTSCEEEEEE
T ss_pred EeHHHHhhC------cCCCeEEEEEEEEEEeCCC--e-EEEECCCc--cEEEEEChhh-----cCCcccCCCCEEEEEEE
Confidence 566666653 5678999999997654332 2 45899997 4999887542 22123999999999999
Q ss_pred EEeCCCCCceEEEEEeeEEEEec
Q 012426 92 VVPSQGSKQKVELKVNKIVLVGK 114 (464)
Q Consensus 92 v~~~~~~~~~~el~~~~i~vls~ 114 (464)
|-+.-. ..||.|..|+++.+
T Consensus 90 vDkd~~---~~eIdV~~i~~~~~ 109 (109)
T 1nnx_A 90 VDKDWN---SVEIDVKQIRKVNP 109 (109)
T ss_dssp EEEETT---EEEEEEEEEEEC--
T ss_pred ECCCCC---ceEEEEEEEEEccC
Confidence 987542 36999999988753
|
| >3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.17 Score=51.14 Aligned_cols=78 Identities=13% Similarity=0.245 Sum_probs=61.8
Q ss_pred CCCCEEEEEEEEeee-ec-CCCeEEEEEEeCcCCcceEEEEeCCccchhh-hhcCCCCCCcEEEEEEEEEeCCCCCceEE
Q 012426 27 RVGLMIVVAGWVRTL-RA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVE 103 (464)
Q Consensus 27 ~~~~~V~v~GwV~~i-R~-~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~-~~~~~l~~g~~V~V~G~v~~~~~~~~~~e 103 (464)
.....++|.|.|.+. +. .|+=+|+.|.|+++ .|.|++=+....|.. ++. |.+||.|.|.|.+.. + .
T Consensus 282 ~~~~~~~v~G~V~~~P~~~~GGHV~f~l~d~~~--~i~c~ayeptk~fr~~vr~--L~~GD~V~v~G~v~~-----g--t 350 (402)
T 3au7_A 282 ENYRSYRLRGRVTLEPYDIEGGHVFFEIDTKFG--SVKCAAFEPTKQFRNVIRL--LRKGDVVEVYGSMKK-----D--T 350 (402)
T ss_dssp CTTCEEEEEEEEEEEEEEETTTEEEEEEEETTE--EEEEEECGGGTTHHHHHTT--CCTTCEEEEEEEEET-----T--E
T ss_pred ccCceEEEEEEEecCcEeccCceEEEEEEcCCC--EEEEEEEccchHHHHHHhc--CCCCCEEEEEEeecC-----C--E
Confidence 345789999999988 55 48899999999864 588887543334544 567 999999999999765 2 8
Q ss_pred EEEeeEEEEecC
Q 012426 104 LKVNKIVLVGKS 115 (464)
Q Consensus 104 l~~~~i~vls~~ 115 (464)
|.++++++++-+
T Consensus 351 LnvEk~~v~~l~ 362 (402)
T 3au7_A 351 INLEKIQIVELA 362 (402)
T ss_dssp EEEEEEEEEECC
T ss_pred EEEEEEEEcccC
Confidence 899999999774
|
| >3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.098 Score=48.34 Aligned_cols=116 Identities=17% Similarity=0.125 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhhhCCcEEEeCceEeecCC-CCCCC-C--ceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccc
Q 012426 152 NALAYATHKFFQENGFIWISSPIITASDC-EGAGE-Q--FCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAF 227 (464)
Q Consensus 152 s~i~~~~r~ff~~~gF~EV~TP~L~~~~~-eg~~~-~--F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~y 227 (464)
.++.+.+|+.|...||.||-|-.+++... +.... . =.|.-.|| .+ ..--.
T Consensus 7 ~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~~~~v~l~NP----------------------ls----~e~~v 60 (213)
T 3ica_A 7 YKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVELMNP----------------------LS----QELNC 60 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCGGGCCBCSSB----------------------SC----SSEEE
T ss_pred HHHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccCcCCeEEecCC----------------------cc----HHHHH
Confidence 46778999999999999999999998542 11100 0 00111122 01 11124
Q ss_pred cccchhHHH-HHHh----hccC--ceEEEccccccCCCC----C-ccccccchhccceecc-------------CCHHHH
Q 012426 228 LTVSGQLNA-ETYA----TALS--NVYTFGPTFRAENSN----T-SRHLAEFWMIEPELAF-------------ADLKDD 282 (464)
Q Consensus 228 L~~Spql~l-qll~----~g~~--rVfeI~~~FR~E~~~----t-~rHl~EFtmlE~e~a~-------------~~~~dl 282 (464)
|++|-=--| +.+. .+.. |+||||+||+.++.+ . ..+..|..+|-+-+++ .|+.|+
T Consensus 61 mRtsLlpgLL~~~~~N~~r~~~~~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~ 140 (213)
T 3ica_A 61 MRQTLLFGGLETLSHNLRRKHLSLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFEL 140 (213)
T ss_dssp ECSSSHHHHHHHHHHHHTTTCSEEEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHH
T ss_pred HHHHhHHHHHHHHHHHHcCCCCCeeEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHH
Confidence 666543333 4443 3554 799999999976531 0 1344677777766544 478999
Q ss_pred HHHHHHHHHHH
Q 012426 283 MACATAYLQYV 293 (464)
Q Consensus 283 m~~~e~li~~i 293 (464)
...+|.++..+
T Consensus 141 Kg~ve~ll~~l 151 (213)
T 3ica_A 141 KAVVEQVLCRV 151 (213)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 98888887654
|
| >3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.49 Score=43.70 Aligned_cols=83 Identities=17% Similarity=0.236 Sum_probs=58.6
Q ss_pred CCEEEEEEEEeeeecCC--------CeEEEEEEeCcCC-cceEEEEeCCccchhh----hhcCCCCCCcEEEEEEEEEeC
Q 012426 29 GLMIVVAGWVRTLRAQS--------SVTFIEVNDGSCL-SNMQCVMTSDAEGYDQ----VKSGLITTGASIWIQGNVVPS 95 (464)
Q Consensus 29 ~~~V~v~GwV~~iR~~g--------~~~Fi~LrD~sg~-~~iQvv~~~~~~~~~~----~~~~~l~~g~~V~V~G~v~~~ 95 (464)
=+.|.|.|.|..++..- ...|+.|.|.||. ..|.|.++.. .+.. +.. ...|.+|.|+|.+..-
T Consensus 85 I~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~--~~~~~gl~l~~--~~~G~iV~VkG~i~~~ 160 (220)
T 3kf8_A 85 VNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQE--QFKEVGLTLDK--KNYGKIVELEGEIYNW 160 (220)
T ss_dssp ECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHH--HHHTTTCCTTS--CCTTCEEEEEEEEEEC
T ss_pred cEEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHH--HhhccCccccc--cCCCeEEEEEEEEEee
Confidence 36799999999997642 4699999999984 2466655532 1211 112 5689999999999875
Q ss_pred CC-----CCceEEEEEeeEEEEecC
Q 012426 96 QG-----SKQKVELKVNKIVLVGKS 115 (464)
Q Consensus 96 ~~-----~~~~~el~~~~i~vls~~ 115 (464)
.. +.-.-||+++++.+++..
T Consensus 161 r~~~~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 161 YDSINVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp CCSTTTTSCCCEEEEEEEEEEEESS
T ss_pred ccccccccccceEEEEEEEEEeccC
Confidence 32 111359999999999875
|
| >2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A | Back alignment and structure |
|---|
Probab=93.93 E-value=0.79 Score=37.53 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=57.5
Q ss_pred CCEEEEEEEEeeeecC---CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEE-EEEEeCCCCCceEEE
Q 012426 29 GLMIVVAGWVRTLRAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ-GNVVPSQGSKQKVEL 104 (464)
Q Consensus 29 ~~~V~v~GwV~~iR~~---g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~-G~v~~~~~~~~~~el 104 (464)
++.|.+.|+|.++-.. +....+.|.|.||. |-+++..+. .+.. +..|++|.|. |.+..-+ +.++|
T Consensus 15 ~~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG~--I~~t~W~~~----~~~~--~~~G~~V~i~n~~v~~~~---G~~~L 83 (109)
T 2kbn_A 15 GQWANLKAKVIQLWENTHESISQVGLLGDETGI--IKFTIWKNA----ELPL--LEQGESYLLRSVVVGEYN---DRFQV 83 (109)
T ss_dssp TCEEEEEEEEEEEEECCCSSEEEEEEEECTTCC--EEEEEEGGG----CCCC--CCTTCEEEEEEEEEEEET---TEEEE
T ss_pred CCcEEEEEEEEEeEcCCCCeEEEEEEEECCCCe--EEEEEECcc----cccc--cCCCCEEEEEEEEEEEEC---CEEEE
Confidence 5789999999887442 33445889999984 888887532 1234 9999999999 6766643 44899
Q ss_pred EEeeEEEEecCCCC
Q 012426 105 KVNKIVLVGKSDPS 118 (464)
Q Consensus 105 ~~~~i~vls~~~~~ 118 (464)
.+.+...+.+....
T Consensus 84 ~v~~~~~I~~~~~~ 97 (109)
T 2kbn_A 84 QVNKNSSIEKLSEP 97 (109)
T ss_dssp EECSSSEEEECSSC
T ss_pred EECCceEEEECCCc
Confidence 99887777665433
|
| >2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=93.11 E-value=1.1 Score=36.36 Aligned_cols=88 Identities=15% Similarity=0.195 Sum_probs=61.3
Q ss_pred eecccccCCCCCCCCCCCCEEEEEEEEeeee-----cCCC---eEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCC
Q 012426 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR-----AQSS---VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (464)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR-----~~g~---~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g 83 (464)
.+|+||... ...|.+.|.|.++- +.|+ +.=+.|.|.||. |.+.+-.+ . +..|
T Consensus 4 ~kI~dl~pg--------~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~--I~~tlW~~--------~--l~~G 63 (106)
T 2k75_A 4 VKIRDVSLS--------TPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTAR--IRISSFGK--------Q--LQDS 63 (106)
T ss_dssp CCSTTCCTT--------CSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCE--EEEEEESS--------C--CCTT
T ss_pred EEHHHcCCC--------CceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCe--EEEEEEcC--------c--cCCC
Confidence 456666542 34588888886652 2343 667889999974 88877654 2 8999
Q ss_pred cEEEEE-EEEEeCCCCCceEEEEEeeEEEEecCCCCCCCC
Q 012426 84 ASIWIQ-GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122 (464)
Q Consensus 84 ~~V~V~-G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~~ 122 (464)
|+|.|. |.+..-+ +.++|.+.+...+.+.....|+.
T Consensus 64 dvv~i~ng~v~~~~---g~~~L~v~~~~~I~~~~~~~~~~ 100 (106)
T 2k75_A 64 DVVRIDNARVAQFN---GYLSLSVGDSSRIESVNVNIPLE 100 (106)
T ss_dssp EEEEEEEEEEEEET---TEEEEEECTTSEEEECCSCCCCS
T ss_pred CEEEEEeeEEeEEC---CEEEEEECCcEEEEECCCCCccc
Confidence 999999 7775543 45899998877777765445654
|
| >4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=92.80 E-value=0.37 Score=40.02 Aligned_cols=67 Identities=19% Similarity=0.309 Sum_probs=45.4
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEE
Q 012426 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (464)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~ 106 (464)
..|++|++-|+|.+++. + . +.|..+.+ +.|+|.++... . +..+.+|.|.|+|.....+-|+..|.+
T Consensus 16 ~~g~~VrivGkV~~~~g-~--~-~~l~s~d~-~~Vtv~l~~~~-------~--~~~~~~vEViG~V~~~~~~~~~~~I~~ 81 (114)
T 4gop_A 16 YVGQTVRIVGKVHKVTG-N--T-LLMQTSDL-GNVEIAMTPDS-------D--VSSSTFVEVTGKVSDAGSSFQANQIRE 81 (114)
T ss_dssp GTTSEEEEEEEEEEEET-T--E-EEEECTTS-CEEEEECCSSC-------C--GGGCSEEEEEEEECTTSSEEEEEEEEE
T ss_pred hCCCeEEEEEEEeeeCC-C--E-EEEEeCCC-CEEEEEeCCCC-------C--cccCcEEEEEEEEcCCCCcccCCeEEE
Confidence 68999999999999996 2 2 44665444 35777766532 2 567899999999975432223355555
Q ss_pred e
Q 012426 107 N 107 (464)
Q Consensus 107 ~ 107 (464)
.
T Consensus 82 ~ 82 (114)
T 4gop_A 82 F 82 (114)
T ss_dssp C
T ss_pred E
Confidence 4
|
| >1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3 | Back alignment and structure |
|---|
Probab=92.76 E-value=0.88 Score=37.76 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=54.0
Q ss_pred CEEEEEEEEeee---e----cCC--CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEE-EEEEeCCCCC
Q 012426 30 LMIVVAGWVRTL---R----AQS--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ-GNVVPSQGSK 99 (464)
Q Consensus 30 ~~V~v~GwV~~i---R----~~g--~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~-G~v~~~~~~~ 99 (464)
..|.+.|.|.++ | +.| .+.=+.|.|.||. |.+.+.... ... +..|++|.|. |.+..-+
T Consensus 13 ~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~--I~~tlW~~~-----~~~--~~~G~vv~i~~g~v~~~~--- 80 (119)
T 1o7i_A 13 ESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGR--VKLTLWGKH-----AGS--IKEGQVVKIENAWTTAFK--- 80 (119)
T ss_dssp SSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEE--EEEEEEGGG-----TTC--CCTTCEEEEEEEEEEEET---
T ss_pred CcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCE--EEEEEECCh-----hhc--CCCCCEEEEEeEEEEEeC---
Confidence 358899999877 4 224 4667789999984 888877542 134 8999999999 8886643
Q ss_pred ceEEEEEeeEEEEecCC
Q 012426 100 QKVELKVNKIVLVGKSD 116 (464)
Q Consensus 100 ~~~el~~~~i~vls~~~ 116 (464)
+.++|.+.+...+.++.
T Consensus 81 g~~qL~i~~~~~i~~~~ 97 (119)
T 1o7i_A 81 GQVQLNAGSKTKIAEAS 97 (119)
T ss_dssp TEEEEEECTTCEEEECC
T ss_pred CEEEEEECCCEEEEEcC
Confidence 44899998755555543
|
| >1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* | Back alignment and structure |
|---|
Probab=92.14 E-value=0.48 Score=52.24 Aligned_cols=110 Identities=12% Similarity=-0.009 Sum_probs=72.1
Q ss_pred hhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC----CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc
Q 012426 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC----EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (464)
Q Consensus 147 ~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~----eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 222 (464)
......++.+.+|+.|...||.|+-|..+++... ....+.+.+ .|| .+.++
T Consensus 487 ~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~v~L--~NP----------------------is~d~- 541 (785)
T 1b7y_B 487 GVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLL--LNP----------------------LAPEK- 541 (785)
T ss_dssp STTHHHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEE--SSC----------------------SSTTS-
T ss_pred cCCHHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHhcCCCCCeEEE--cCC----------------------Cchhh-
Confidence 3444677889999999999999999998887631 101222333 232 01111
Q ss_pred CcccccccchhHHH-HHHh----hc-c--CceEEEccccccCCCCCccccccchhccceecc------------CCHHHH
Q 012426 223 EKPAFLTVSGQLNA-ETYA----TA-L--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF------------ADLKDD 282 (464)
Q Consensus 223 ~~~~yL~~Spql~l-qll~----~g-~--~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~------------~~~~dl 282 (464)
-.|++|-=--+ +.+. .+ . -|+||+|+||| + .||++|..-++. .|+.|+
T Consensus 542 ---svLRtsLlpgLL~~l~~N~~r~~~~~vrlFEiG~Vf~-~--------~e~~~lagl~~G~~~~~~w~~~~~vdf~dl 609 (785)
T 1b7y_B 542 ---AALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFR-E--------REETHLAGLLFGEGVGLPWAKERLSGYFLL 609 (785)
T ss_dssp ---SEECSCSHHHHHHHHHHHHHHSCCSCEEEEEEEEEES-S--------SEEEEEEEEEESSCBSCSSSSCCBCSHHHH
T ss_pred ---hhhhhhhHHHHHHHHHHHhhcCCCCCeEEEEEeeeec-c--------ChhhEEEEEEECCCcccccCccCCcCHHHH
Confidence 23555433333 4433 23 3 37899999999 2 588888876655 479999
Q ss_pred HHHHHHHHHHH
Q 012426 283 MACATAYLQYV 293 (464)
Q Consensus 283 m~~~e~li~~i 293 (464)
...+|.++..+
T Consensus 610 Kg~le~ll~~l 620 (785)
T 1b7y_B 610 KGYLEALFARL 620 (785)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999998876
|
| >3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A | Back alignment and structure |
|---|
Probab=92.10 E-value=0.79 Score=38.39 Aligned_cols=71 Identities=8% Similarity=0.148 Sum_probs=49.9
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEE
Q 012426 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (464)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~ 106 (464)
..|++|++-|+|.+++..|+.+-+.-.|+ +.++|.++.... ...+.+|.|.|+|... .+|.+
T Consensus 20 fvgk~VrivGkV~~~~~~g~~~~l~s~Dg---~~Vtv~l~~p~~---------~~l~~~vEViG~V~~~------~tI~~ 81 (121)
T 3kdf_A 20 FIDKPVCFVGRLEKIHPTGKMFILSDGEG---KNGTIELMEPLD---------EEISGIVEVVGRVTAK------ATILC 81 (121)
T ss_dssp GTTCEEEEEEEEEEECTTSSEEEEECTTS---CEEEEECSSCCS---------SCCCSEEEEEEEECTT------SCEEE
T ss_pred hCCCeEEEEEEEEEEcCCCCEEEEEeCCC---CEEEEEeCCCCC---------cccCcEEEEEEEECCC------CeEEE
Confidence 68999999999999998776554444444 258887765321 2225599999999631 46788
Q ss_pred eeEEEEecC
Q 012426 107 NKIVLVGKS 115 (464)
Q Consensus 107 ~~i~vls~~ 115 (464)
..+.-++..
T Consensus 82 ~~~~~fg~~ 90 (121)
T 3kdf_A 82 TSYVQFKED 90 (121)
T ss_dssp EEEEECCCS
T ss_pred EEEEecCCC
Confidence 777777654
|
| >2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C | Back alignment and structure |
|---|
Probab=92.05 E-value=0.84 Score=39.36 Aligned_cols=90 Identities=10% Similarity=0.103 Sum_probs=56.4
Q ss_pred CCCCCcccccceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCC
Q 012426 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI 80 (464)
Q Consensus 1 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l 80 (464)
|++.|.....++.-+-|.. ..|++|+|-|+|.++-..|+.+ .|+...+ ..|+|.++... . -
T Consensus 22 ~~~~m~~~~pRVN~s~L~~-------fvGk~VriVGkV~~~~~~G~~~--~l~s~Dg-~~VtV~l~~pL-------~--~ 82 (142)
T 2pi2_E 22 MVDMMDLPRSRINAGMLAQ-------FIDKPVCFVGRLEKIHPTGKMF--ILSDGEG-KNGTIELMEPL-------D--E 82 (142)
T ss_dssp -CCGGGSCCEEECGGGGGG-------STTCEEEEEEEEEEECTTSSEE--EEECTTS-CEEEEECSSCC-------S--S
T ss_pred ccccccCCcceECHHHHHh-------hCCCEEEEEEEEeEEcCCCCEE--EEEeCCC-cEEEEEeCCCC-------C--c
Confidence 3445555555555554443 6899999999999994444433 4565554 35777765321 1 2
Q ss_pred CCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecC
Q 012426 81 TTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (464)
Q Consensus 81 ~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~ 115 (464)
..+-+|.|.|+|... .+|.+..+.-++..
T Consensus 83 ~~~~~VEViG~V~~~------~tI~~~~~~~fGd~ 111 (142)
T 2pi2_E 83 EISGIVEVVGRVTAK------ATILCTSYVQFKED 111 (142)
T ss_dssp CCCSEEEEEEEECTT------SCEEEEEEEECCCS
T ss_pred cCCCEEEEEEEECCC------CcEEEEEEEecCCC
Confidence 457799999999441 35677766666553
|
| >3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A | Back alignment and structure |
|---|
Probab=90.01 E-value=0.81 Score=37.96 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=40.0
Q ss_pred eEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCCC
Q 012426 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121 (464)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P~ 121 (464)
|+||+-.+.. +.++. |..|+-|.|+|.+.........++|+++.|+.|+.....-|+
T Consensus 49 i~vv~~Gk~A--E~~~~--l~kGs~V~VeGrL~trs~~G~kl~l~a~~Ie~l~~~~~~~~~ 105 (115)
T 3fhw_A 49 ISAVALGDLA--LLLAD--TPLGTEMQVQGFLAPARKDSVKVKLHLQQARRIAGSMGRDPL 105 (115)
T ss_dssp EEEEEETHHH--HHHTT--CCTTCEEEEEEEEEESSTTCSSEEEEEEEEEECCCSCCC---
T ss_pred EEEEEEhHHH--Hhhhc--cCCCCEEEEEEEEEECCCCCCEEEEEEEEEEEcCCCCCCCCc
Confidence 7787775432 12455 999999999999987433335699999999999876544454
|
| >2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* | Back alignment and structure |
|---|
Probab=89.81 E-value=0.35 Score=55.59 Aligned_cols=80 Identities=10% Similarity=0.202 Sum_probs=47.3
Q ss_pred CCCCEEEEEEEEeeeecC----C-CeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCce
Q 012426 27 RVGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (464)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~----g-~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~ 101 (464)
..|+.|+|+|.|.++|.. | .++|+.|.|.+|. +.+++-++. |+..+. .|..+.+|.|+|+|.... .
T Consensus 1040 ~~g~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg~--~evvvf~~~--~~~~~~-~l~~~~~~~v~G~v~~~~----~ 1110 (1220)
T 2hpi_A 1040 PGKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGA--LEVVVFGRA--YEGVSP-KLKEDIPLLVLAEVEKGE----E 1110 (1220)
T ss_dssp SSSCEEEEEEEECCC------------CEEEEETTEE--EEEC----------------CTTCEEEEEEEEC--------
T ss_pred cCCCeEEEEEEEEEEEEeecCCCCeEEEEEEEECCCC--EEEEEcHHH--HHHHHH-HhccCCEEEEEEEEEECC----C
Confidence 357889999999988763 2 4999999999974 888876543 444332 489999999999997643 2
Q ss_pred EEEEEeeEEEEecC
Q 012426 102 VELKVNKIVLVGKS 115 (464)
Q Consensus 102 ~el~~~~i~vls~~ 115 (464)
+.|.+.++.-++.+
T Consensus 1111 ~~l~~~~i~~l~~~ 1124 (1220)
T 2hpi_A 1111 LRVLAQAVWTLEEV 1124 (1220)
T ss_dssp -CEEEEEEEEHHHH
T ss_pred cEEEEeeeecHHHH
Confidence 67888888766543
|
| >1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.10 E-value=0.92 Score=37.38 Aligned_cols=92 Identities=10% Similarity=0.156 Sum_probs=62.2
Q ss_pred ceecccccCCCCCCCCCCCCEEEEEEEEeee---ec------CCCeEEEEEEeCcCCcceEEEEeCCccchhhh-hcCCC
Q 012426 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLI 80 (464)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~i---R~------~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~-~~~~l 80 (464)
-+.|++|... ....+|+|||.++ |. .|++.=++|.|.+| .|++.+-.+.. +.+ .. |
T Consensus 4 ~~~Is~L~p~--------~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~--~~f~~~--l 69 (114)
T 1ynx_A 4 IFAIEQLSPY--------QNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSG--EIRATAFNDFA--TKFNEI--L 69 (114)
T ss_dssp BCCGGGCCTT--------TCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTE--EEEEEECHHHH--HHHHHH--S
T ss_pred eEEHHHCCCC--------CCceEEEEEEEEeccceEEecCCCCceEEEEEEECCCC--eEEEEECHHHH--HHHHhh--c
Confidence 3567777653 2348899999854 21 36788888999998 69999875421 222 34 9
Q ss_pred CCCcEEEEEEE-EEeCCCC----CceEEEEEeeEEEEecCC
Q 012426 81 TTGASIWIQGN-VVPSQGS----KQKVELKVNKIVLVGKSD 116 (464)
Q Consensus 81 ~~g~~V~V~G~-v~~~~~~----~~~~el~~~~i~vls~~~ 116 (464)
..|+++.|.+- |...... ...+||....-+.+.+|.
T Consensus 70 ~eG~vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~ 110 (114)
T 1ynx_A 70 QEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECF 110 (114)
T ss_dssp CSSSEEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEESC
T ss_pred ccCcEEEECCcEEEECCCCcccCCCCEEEEECCCCEEEECC
Confidence 99999999874 4443221 246899888777777764
|
| >1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A | Back alignment and structure |
|---|
Probab=83.29 E-value=2.1 Score=39.93 Aligned_cols=93 Identities=14% Similarity=0.148 Sum_probs=62.4
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeee---ec------CCCeEEEEEEeCcCCcceEEEEeCCccchhhh-hcCC
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGL 79 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~i---R~------~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~-~~~~ 79 (464)
.-+.|++|... ....+|+|||.++ |. .|++.-++|.|.+| .|++.+..+.. +.+ ..
T Consensus 7 ~~~~I~~L~p~--------~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~--~~~~~~-- 72 (246)
T 1jmc_A 7 KVVPIASLTPY--------QSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG--EIRATAFNEQV--DKFFPL-- 72 (246)
T ss_dssp CBCCGGGCCTT--------CCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEEHHHH--HHHGGG--
T ss_pred ceEEHHHCCCC--------CCceEEEEEEEEecccceeeCCCCCceEEEEEEECCCC--eEEEEEChHHH--HHhhhh--
Confidence 34668888663 2357999999875 32 25677788999998 59999885421 222 34
Q ss_pred CCCCcEEEEEEE-EEeCC----CCCceEEEEEeeEEEEecCC
Q 012426 80 ITTGASIWIQGN-VVPSQ----GSKQKVELKVNKIVLVGKSD 116 (464)
Q Consensus 80 l~~g~~V~V~G~-v~~~~----~~~~~~el~~~~i~vls~~~ 116 (464)
|..|+++.+.+- |.... .....+||....-+.+.++.
T Consensus 73 l~~G~vy~i~~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~ 114 (246)
T 1jmc_A 73 IEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCE 114 (246)
T ss_dssp CCTTCEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEECC
T ss_pred cccCCEEEECCCEEEEcccCcccCCCCEEEEEcCCcEEEEcc
Confidence 999999999874 43331 11346899887666666654
|
| >3f1z_A Putative nucleic acid-binding lipoprotein; YP_001337197.1, S genomics, joint center for structural genomics, JCSG; 2.46A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=82.59 E-value=5.9 Score=31.21 Aligned_cols=68 Identities=21% Similarity=0.295 Sum_probs=46.0
Q ss_pred CCCCEEEEEEEEeeeecC----CCeEEEE-EEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCC
Q 012426 27 RVGLMIVVAGWVRTLRAQ----SSVTFIE-VNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (464)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~----g~~~Fi~-LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~ 96 (464)
..|+-|.|+|-|..||+. |+.-||. .||....-.-.+.++-..-+...+.. |+.|++..+.|.|..-+
T Consensus 47 ylgkwvkvrgvivdirrksgiagsyyfivtmrdeqnktdkrltfnfgshnsadvea--lsngsvativgqvhqvq 119 (133)
T 3f1z_A 47 YLGKWVKVRGVIVDIRRKSGIAGSYYFIVTMRDEQNKTDKRLTFNFGSHNSADVEA--LSNGSVATIVGQVHQVQ 119 (133)
T ss_dssp HTTCEEEEEEEEEEEEEEECSTTCEEEEEEEECTTCSCSCCEEEEEEGGGHHHHTT--CCTTSEEEEEEECCCCC
T ss_pred hhcceEEEEEEEEEeeeccCccceEEEEEEeeccccCccceEEEeccCCcchhhHh--hcCCceeeEeeeeeeee
Confidence 568999999999999884 5677765 78865321112233322222234667 99999999999987654
|
| >3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090} | Back alignment and structure |
|---|
Probab=81.77 E-value=2.5 Score=34.18 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=35.0
Q ss_pred eEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEE
Q 012426 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLV 112 (464)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vl 112 (464)
++|++-.+.. + +.. |..|+-|.|+|.+....-+...+.+++++|+.+
T Consensus 55 i~vv~~gk~A--e-~~~--l~KG~~v~veGrL~~rs~~~~~lvlhi~~i~~i 101 (103)
T 3k8a_A 55 IPARILGRQA--E-EWQ--YRQGDCATVEGFLAQKSRRSLMPMLRIQNIKEY 101 (103)
T ss_dssp EEEEEEHHHH--H-HST--TCTTCEEEEEEEEEESSSSCCCEEEEEEEEEEC
T ss_pred EEEEEEhHHh--h-hhc--cCCCCEEEEEEEEEECccCCccEEEEEEEEEEc
Confidence 5555544321 2 445 999999999999997765555799999999876
|
| >3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B | Back alignment and structure |
|---|
Probab=81.23 E-value=11 Score=32.27 Aligned_cols=74 Identities=12% Similarity=0.069 Sum_probs=49.7
Q ss_pred CCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEee
Q 012426 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (464)
Q Consensus 29 ~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~ 108 (464)
=..|+++|-|... +.|. +.|+|+||. +-+-.-.+.+. --.. +..|..|.|.|.+..+.. .-.|++.+
T Consensus 58 ~s~VWmQG~VV~~-~~g~---~~LdDgTG~--~~v~g~~~vp~--g~p~--l~~G~YVMV~G~v~~~s~---eP~i~AvK 124 (150)
T 3mxn_B 58 LAAVWMQGRVVMA-DRGE---ARLRDPSGD--FSVRGLERVPR--GRPC--LVPGKYVMVMGVVQACSP---EPCLQAVK 124 (150)
T ss_dssp CSEEEEEEEEEEE-ETTE---EEEEETTEE--EEEECGGGSCC--CSCC--CSTTCEEEEEEEEEECSS---SCEEEEEE
T ss_pred eEEEEEEeEEEEe-CCCe---EEEECCCce--EEEeeccccCC--CCcc--cCCCCEEEEEEEEEecCC---CceEEEEE
Confidence 4679999999996 4453 669999985 33211111110 0113 889999999999987542 36888888
Q ss_pred EEEEecC
Q 012426 109 IVLVGKS 115 (464)
Q Consensus 109 i~vls~~ 115 (464)
+.=||..
T Consensus 125 m~DLS~~ 131 (150)
T 3mxn_B 125 MTDLSDN 131 (150)
T ss_dssp EEECCSC
T ss_pred eeeCCCC
Confidence 8877773
|
| >1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A | Back alignment and structure |
|---|
Probab=80.10 E-value=17 Score=30.82 Aligned_cols=90 Identities=21% Similarity=0.271 Sum_probs=56.7
Q ss_pred eecccccCCCC--CCCCCCCCEEEEEEEEe--eeecC---CCeEEEEEEe-CcCCcceEEEEeCCccchhhhhcCCCCCC
Q 012426 12 LKIVDVKGGPN--EGLDRVGLMIVVAGWVR--TLRAQ---SSVTFIEVND-GSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (464)
Q Consensus 12 ~~i~~l~~~~~--~~~~~~~~~V~v~GwV~--~iR~~---g~~~Fi~LrD-~sg~~~iQvv~~~~~~~~~~~~~~~l~~g 83 (464)
.+..++..... +.....++.|+|.|.|. ++.+. ..+.|. |.| +. ..|.|....-.+. +.+.|
T Consensus 13 ~tpsei~~~~~~~~~~~~~g~~iRvgG~V~~GSv~r~~~~~~v~F~-vtD~~~--~~v~V~Y~GilPD-------lFrEG 82 (136)
T 1j6q_A 13 YTPSEIVNGKTDTGVKPEAGQRIRVGGMVTVGSMVRDPNSLHVQFA-VHDSLG--GEILVTYDDLLPD-------LFREG 82 (136)
T ss_dssp ECTTTTTTTSTTTTSSSCTTCEEEEEEEECTTCCEECTTSSCEEEE-EECTTC--CCEEEEECSCCTT-------SCCSS
T ss_pred eCHHHHHcCcccccccCCCCCEEEEeEEEeCCcEEecCCCCEEEEE-EEcCCC--CEEEEEECCCCCc-------cccCC
Confidence 45566654310 00135789999999996 45442 357776 688 54 3688888754432 37889
Q ss_pred cEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCC
Q 012426 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSY 119 (464)
Q Consensus 84 ~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~ 119 (464)
.-|.|+|++... + .++++ +||.||+..|
T Consensus 83 qgVVa~G~l~~~--g----~F~A~--eVLaKhdekY 110 (136)
T 1j6q_A 83 QGIVAQGVLGED--G----KLAAT--EVLAKHDENY 110 (136)
T ss_dssp SEEEEEEEECST--T----SEEEE--EEECCC----
T ss_pred CeEEEEEEECCC--C----eEEEE--EEEecCCCCC
Confidence 999999998542 1 24555 5999998664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 464 | ||||
| d1n9wa2 | 304 | d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (As | 1e-46 | |
| d1nnha_ | 293 | d.104.1.1 (A:) Hypothetical protein PF1951 {Archae | 6e-41 | |
| d1eova2 | 353 | d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (As | 3e-37 | |
| d1c0aa3 | 346 | d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synt | 1e-34 | |
| d1b8aa2 | 335 | d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (As | 3e-33 | |
| d1e1oa2 | 342 | d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS | 3e-33 | |
| d1l0wa3 | 356 | d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synt | 2e-30 | |
| d1n9wa1 | 93 | b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) | 2e-12 | |
| d1b8aa1 | 103 | b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS | 1e-10 | |
| d1eova1 | 134 | b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspR | 6e-09 | |
| d1l0wa1 | 104 | b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS | 3e-05 | |
| d1c0aa1 | 106 | b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS | 7e-05 |
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 304 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Score = 161 bits (408), Expect = 1e-46
Identities = 77/318 (24%), Positives = 126/318 (39%), Gaps = 50/318 (15%)
Query: 136 HLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPS 195
++ R A +V+ AL ++ F I +P + + EG F V
Sbjct: 3 YVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGV------ 56
Query: 196 SREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRA 255
D+FEK A+L S QL + VY P +R
Sbjct: 57 ------------------------DYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRM 92
Query: 256 ENSNTSRHLAEFWMIEPELAFADLKDD-MACATAYLQYVVRYILDNCKEDMDFFNTWIEK 314
E +TSRHL E+ ++ E+ F ++D M A L ++ L+ +++
Sbjct: 93 EEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPS 152
Query: 315 GIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFG 371
+D +L++ +A +L K E G DL E ER L E E +G
Sbjct: 153 ---------FPQDIPRLTHAEAKRIL-----KEELGYPVGQDLSEEAERLLGEYAKERWG 198
Query: 372 GCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL 431
+ V+ YP+ ++ FY +DG T + L+ R E+ G QR R E L L
Sbjct: 199 SDWLFVTRYPRSVRPFYTYPEEDGTTRS--FDLLFRGLEITSGGQRIHRYEELLESLKAK 256
Query: 432 KLNRDSYWWYLDLRHYGS 449
++ +++ YL++ YG
Sbjct: 257 GMDPEAFHGYLEVFKYGM 274
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 146 bits (368), Expect = 6e-41
Identities = 52/321 (16%), Positives = 93/321 (28%), Gaps = 76/321 (23%)
Query: 136 HLRPRTNTFGAVARVRNALAYATHKFFQENGFIW----ISSPIITASDCEGAGEQFCVTT 191
+ + ++ + FF + GF W I SPI + AGE
Sbjct: 2 AVEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGE------ 55
Query: 192 LIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL-NAETYATALSNVYTFG 250
G+ + + LT S L A L ++
Sbjct: 56 ---------------------GMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLS 94
Query: 251 PTFRAEN--SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFF 308
P R E+ + RH EF ++ E+ A ++D M + + R + +
Sbjct: 95 PNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKT 154
Query: 309 NTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEE 368
+ + FE+ SE +
Sbjct: 155 KRF---------------------------------EVFEY---------SEVLEEFGSD 172
Query: 369 AFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRL 428
+ + I + + DG +L GE+ G +RE E + ++
Sbjct: 173 EKASQEMEEPFWIINIPREFYDREVDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKI 232
Query: 429 DELKLNRDSYWWYLDLRHYGS 449
+ LN DS+ YL++ G
Sbjct: 233 RKAGLNEDSFRPYLEIAKAGK 253
|
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 137 bits (346), Expect = 3e-37
Identities = 65/318 (20%), Positives = 118/318 (37%), Gaps = 38/318 (11%)
Query: 136 HLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPS 195
+ RT T A+ R++ + ++ F + +P + + EG F V
Sbjct: 32 VIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEV------ 85
Query: 196 SREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA-LSNVYTFGPTFR 254
+F+ A+L S Q N + A VY GP FR
Sbjct: 86 ------------------------TYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFR 121
Query: 255 AENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQY-VVRYILDNCKEDMDFFNTWIE 313
AENSNT RH+ EF ++ E+AF + ++ + L + + +++
Sbjct: 122 AENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYP 181
Query: 314 KGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGC 373
++ + V+L+Y + IE+L A K+ + + + L + +
Sbjct: 182 ---VEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGK-LVRDKYDTD 237
Query: 374 PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKL 433
I+ +P EI+ FY + + R E++ G+QR L+ R+ L
Sbjct: 238 FYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGL 297
Query: 434 NRD--SYWWYLDLRHYGS 449
+ + Y D YG
Sbjct: 298 SPEDPGLKDYCDGFSYGC 315
|
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Score = 130 bits (327), Expect = 1e-34
Identities = 61/338 (18%), Positives = 108/338 (31%), Gaps = 64/338 (18%)
Query: 120 PIQKKRVSREFLRTKA-HLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
P+ V+ E R K +L R + R + +F ++GF+ I +P++T +
Sbjct: 3 PLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKA 62
Query: 179 DCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET 238
EGA + S+ K L S QL +
Sbjct: 63 TPEGARDYLV----------------------------PSRVHKGKFYALPQSPQLFKQL 94
Query: 239 YATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYI 297
+ Y FR E+ R EF I+ E +F A ++++
Sbjct: 95 LMMSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDVETSFMTAPQVREVMEALVRHLW--- 150
Query: 298 LDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDL 357
L+ D+ F R + + + ++ W D
Sbjct: 151 LEVKGVDLGDFPVMTFAEAERRYGSDKP----------------DLRDESKWAPLWVIDF 194
Query: 358 ---QSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGG 414
+ + E LT PK++ A ++ + A DM++ E+ GG
Sbjct: 195 PMFEDDGEGGLTAMHH------PFTSPKDMTAAELKAAPENAVANAYDMVING-YEVGGG 247
Query: 415 SQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYG 448
S R + + L +N R+ + + LD YG
Sbjct: 248 SVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYG 285
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Score = 126 bits (316), Expect = 3e-33
Identities = 86/334 (25%), Positives = 138/334 (41%), Gaps = 42/334 (12%)
Query: 117 PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIIT 176
P P K + + + R A+ ++R+++ A FF ENGFI I +P I
Sbjct: 3 PLDPTGKVKAELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKII 62
Query: 177 ASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL-N 235
A+ EG E F +FE+ AFL S QL
Sbjct: 63 ATATEGGTELFP------------------------------MKYFEEDAFLAESPQLYK 92
Query: 236 AETYATALSNVYTFGPTFRAENSNTSRHLAEFWMI-EPELAFADLKDDMACATAYLQYVV 294
A+ L VY P FRAE NT+RHL E W I D ++ M+ + + +
Sbjct: 93 EIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAI 152
Query: 295 RYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWG 354
Y+ ++ +++D N +E+ + F ++SY A+E+L K+ +
Sbjct: 153 NYVREHNAKELDILNFELEEPKLP---------FPRVSYDKALEILGDLGKEIPWGEDID 203
Query: 355 CDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGG 414
+ + +Y+ E + YP E K FY+ + D+ + L R E+ G
Sbjct: 204 TEGERLLGKYMMEN-ENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYRGVEISSG 262
Query: 415 SQREERLEYLEGRLDELKLNRDSYWWYLDLRHYG 448
QRE R + L ++ E LN +S+ +YL YG
Sbjct: 263 GQREHRHDILVEQIKEKGLNPESFEFYLKAFRYG 296
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Score = 126 bits (317), Expect = 3e-33
Identities = 47/325 (14%), Positives = 91/325 (28%), Gaps = 46/325 (14%)
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREA 199
+ VR+ + A +F GF+ + +P++ + F
Sbjct: 15 ANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHH-------- 66
Query: 200 AESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSN 259
+ + +L ++ +L +
Sbjct: 67 --------------------NALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGI 106
Query: 260 TSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDR 319
+ RH EF M+E +A+AD D + + + + + +L K K
Sbjct: 107 SVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKL 166
Query: 320 LSTVA------ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCD-LQSEHERYLTEEAFGG 372
A E D L DA + L + WG + +E + E
Sbjct: 167 TMREAIKKYRPETDMADLDNFDAAKALAE-SIGITVEKSWGLGRIVTEIFDEVAEAHL-I 224
Query: 373 CPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELK 432
P +++YP E+ R + + + + E+ G E R E
Sbjct: 225 QPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGG-REIGNGFSELNDAEDQAERFQEQV 283
Query: 433 LNRDS--------YWWYLDLRHYGS 449
+ + Y+ YG
Sbjct: 284 NAKAAGDDEAMFYDEDYVTALEYGL 308
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Score = 119 bits (298), Expect = 2e-30
Identities = 59/344 (17%), Positives = 104/344 (30%), Gaps = 63/344 (18%)
Query: 117 PSYPIQKK-------RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIW 169
P +P+ S E +L R R+R+ + A F GF+
Sbjct: 2 PPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQ 61
Query: 170 ISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT 229
+ +P +T S EGA + + L
Sbjct: 62 VETPFLTKSTPEGARDFLV----------------------------PYRHEPGLFYALP 93
Query: 230 VSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATA 288
S QL + A L + FR E+ +F ++ E++F +++D +
Sbjct: 94 QSPQLFKQMLMVAGLDRYFQIARCFRDEDLRA-DRQPDFTQLDLEMSFVEVEDVLELNER 152
Query: 289 YLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFE 348
+ +V R L + F + Y L + +F
Sbjct: 153 LMAHVFREALGVEL-PLPFPRLSY--------------EEAMERYGSDKPDLRREGFRFL 197
Query: 349 FLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRI 408
++V + E E T S +P++ + + D GR A LV
Sbjct: 198 WVVDFPLLEWDEEEEAWTYM----HHPFTSPHPED---LPLLEKDPGRVRALAYDLVLNG 250
Query: 409 GELIGGSQREERLEYLEGRLDELKLNRDS----YWWYLDLRHYG 448
E+ GGS R L + + + ++L+ YG
Sbjct: 251 VEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYG 294
|
| >d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Score = 60.6 bits (147), Expect = 2e-12
Identities = 12/95 (12%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGAS 85
VG + + G++ R + F+ + D S + + +
Sbjct: 10 AHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGGLKLPLPES-----------A 58
Query: 86 IWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+ ++G VV + + +E++ ++ ++ + P
Sbjct: 59 LRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTP 93
|
| >d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Score = 56.2 bits (135), Expect = 1e-10
Identities = 15/89 (16%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
G + VAGWV ++ + F+ + D + + + + + +
Sbjct: 15 NGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQI-TAPKKKVDPELFKLIPKLRSEDVVA 73
Query: 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSD 116
++G V + +K E+ KIV++ +++
Sbjct: 74 VEGVVNFTPKAKLGFEILPEKIVVLNRAE 102
|
| >d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 134 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.0 bits (124), Expect = 6e-09
Identities = 16/117 (13%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSS-VTFIEVNDGSCLSNMQCVMTS 67
+K++K VD+ + + ++ V R Q + + F+ + + L
Sbjct: 21 QKRVKFVDLDEAKDSDKE-----VLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANK 75
Query: 68 DAEGYDQ--VKSGLITTGASIWIQGNVVPS-----QGSKQKVELKVNKIVLVGKSDP 117
+ +G + + + ++G V + Q +E+ + KI + ++
Sbjct: 76 EGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPE 132
|
| >d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Score = 40.8 bits (95), Expect = 3e-05
Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG +V+ GWV R + F+++ D L + + + +
Sbjct: 15 VGEEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVA----HPASPAYATAERVRPEWVVR 70
Query: 88 IQGNVVPSQGSKQK-----VELKVNKIVLVGKS 115
+G V + VE++++ + ++ ++
Sbjct: 71 AKGLVRLRPEPNPRLATGRVEVELSALEVLAEA 103
|
| >d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Score = 39.6 bits (92), Expect = 7e-05
Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + + GWV R S+ FI++ D + + + + I
Sbjct: 14 VGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRA---DALKLASELRNEFCIQ 70
Query: 88 IQGNVVPSQGSKQ-------KVELKVNKIVLVGKSD 116
+ G V ++E+ + + ++ ++D
Sbjct: 71 VTGTVRARDEKNINRDMATGEIEVLASSLTIINRAD 106
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 464 | |||
| d1eova2 | 353 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 100.0 | |
| d1e1oa2 | 342 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 100.0 | |
| d1n9wa2 | 304 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 100.0 | |
| d1b8aa2 | 335 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 100.0 | |
| d1l0wa3 | 356 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 100.0 | |
| d1c0aa3 | 346 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 100.0 | |
| d1nnha_ | 293 | Hypothetical protein PF1951 {Archaeon Pyrococcus f | 100.0 | |
| d1b8aa1 | 103 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 99.86 | |
| d1n9wa1 | 93 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 99.84 | |
| d1l0wa1 | 104 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 99.83 | |
| d1c0aa1 | 106 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 99.82 | |
| d1e1oa1 | 143 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 99.8 | |
| d1eova1 | 134 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 99.74 | |
| d1jjca_ | 266 | Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS | 98.55 | |
| d1nyra4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a | 98.0 | |
| d1z7ma1 | 318 | ATP phosphoribosyltransferase regulatory subunit H | 97.9 | |
| d1hc7a2 | 272 | Prolyl-tRNA synthetase (ProRS) {Thermus thermophil | 97.68 | |
| d1qf6a4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Escherichia coli | 97.61 | |
| d1wu7a2 | 327 | Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop | 97.41 | |
| d1nj8a3 | 268 | Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc | 97.36 | |
| d1qe0a2 | 325 | Histidyl-tRNA synthetase (HisRS) {Staphylococcus a | 97.26 | |
| d1b76a2 | 331 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 97.26 | |
| d1h4vb2 | 324 | Histidyl-tRNA synthetase (HisRS) {Thermus thermoph | 97.16 | |
| d1kmma2 | 322 | Histidyl-tRNA synthetase (HisRS) {Escherichia coli | 97.1 | |
| d1nj1a3 | 265 | Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth | 97.08 | |
| d2pi2a1 | 128 | Replication protein A 32 KDa subunit (RPA32) fragm | 96.5 | |
| d1seta2 | 311 | Seryl-tRNA synthetase (SerRS) {Thermus thermophilu | 96.34 | |
| d1nnxa_ | 106 | Hypothetical protein YgiW {Escherichia coli [TaxId | 95.95 | |
| d12asa_ | 327 | Asparagine synthetase {Escherichia coli [TaxId: 56 | 95.9 | |
| d1o7ia_ | 115 | Archaeal ssDNA-binding protein {Archaeon Sulfolobu | 94.93 | |
| d1usya_ | 275 | ATP phosphoribosyltransferase regulatory subunit H | 94.44 | |
| d1jmca1 | 116 | Replication protein A 70 KDa subunit (RPA70) {Huma | 92.89 | |
| d2pi2e1 | 115 | Replication protein A 14 KDa (RPA14) subunit {Huma | 92.78 | |
| d1gm5a2 | 180 | RecG "wedge" domain {Thermotoga maritima [TaxId: 2 | 88.27 | |
| d1atia2 | 394 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 85.76 | |
| d1jjcb5 | 207 | Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, | 85.23 | |
| d1wjja_ | 145 | Hypothetical protein At4g28440 (F20O9.120) {Thale | 84.37 | |
| d1sr3a_ | 114 | Heme chaperone CcmE {Escherichia coli [TaxId: 562] | 80.01 |
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.9e-68 Score=536.16 Aligned_cols=304 Identities=22% Similarity=0.368 Sum_probs=252.2
Q ss_pred cchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCC
Q 012426 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVD 205 (464)
Q Consensus 126 ~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~ 205 (464)
.+.|.+.++||||+|++.++++||+||+|++++|+||.++||+||+||+|++++|||++++|.++
T Consensus 22 ~~~e~r~~~R~lDlr~~~~~~ilr~Rs~i~~~iR~ff~~~gflEV~TPiL~~~~~eg~~~~f~~~--------------- 86 (353)
T d1eova2 22 VNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVT--------------- 86 (353)
T ss_dssp CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEEE---------------
T ss_pred CCHHHHhhhhHHhhCCHhHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCcchhccccce---------------
Confidence 35677789999999999999999999999999999999999999999999999999999999763
Q ss_pred CCCCCCCCCccccccccCcccccccchhHHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCC-HHHHH
Q 012426 206 AIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDM 283 (464)
Q Consensus 206 ~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~-~~dlm 283 (464)
+++.++||++||||||| ++++|++||||||||||||++++.||||||||||||++|.| ++++|
T Consensus 87 ---------------~~~~~~yL~~Spel~lk~ll~~g~~~vf~I~~~FR~E~~~~~rH~pEFtmLE~y~a~~d~~~~i~ 151 (353)
T d1eova2 87 ---------------YFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVL 151 (353)
T ss_dssp ---------------ETTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHH
T ss_pred ---------------eeCCcceeccchhhhhhhhhhcccccceeechhhhccccccccccchhcccccccccchhhHHHH
Confidence 57788999999999995 78999999999999999999988899999999999999997 89999
Q ss_pred HHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHH
Q 012426 284 ACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHER 363 (464)
Q Consensus 284 ~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~ 363 (464)
+++|++++.+++.+..++...+++...+.+... .......+++++++.||+++|++.+........++.......++
T Consensus 152 ~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ri~~~ea~~~l~~~~~~~~~~~~~~~~~~~~l~~ 228 (353)
T d1eova2 152 DTLSELFVFIFSELPKRFAHEIELVRKQYPVEE---FKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGK 228 (353)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCC---CCCCTTCCCEEEEHHHHHHHHHHTTCCCCTTCCCCHHHHHHHHH
T ss_pred HHHHHHHhhhccccchhhhhhhhhhcccCccce---eeccCCCceeeeehHhhHHHHHHHhhhcccccccchhhHHHHHH
Confidence 999999999999998877655544332211100 01123456889999999999998765432222222222223333
Q ss_pred HhhhhcccCCCeeeeeCCCCCcccccccC-CCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHcCCCcc--chHH
Q 012426 364 YLTEEAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD--SYWW 440 (464)
Q Consensus 364 ~l~e~~~~~~p~fI~~yP~~~~pfy~~~~-~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~--~~~~ 440 (464)
++.+.+ ...++||+|||.+++|||++.+ +++++++|||||++|+ ||+|||+|++|+++|++||+++|++++ .++|
T Consensus 229 ~i~~~~-~~~~~~i~~~P~~~~p~~~~~~~~~~~~a~rfeL~~~G~-El~nG~~e~~d~~~~~~r~~~~~~~~~~~~~~~ 306 (353)
T d1eova2 229 LVRDKY-DTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGE-EILSGAQRIHDHALLQERMKAHGLSPEDPGLKD 306 (353)
T ss_dssp HHHHHS-CCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHH
T ss_pred HHHhhc-cCCcccccCCcHHHhhhhhCCChhhhhhhhceeeeeece-EEcceecccCCHHHHHHHHHHcCCChhhhHHHH
Confidence 333333 3367899999999999997654 5678999999999995 999999999999999999999999876 4899
Q ss_pred HHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 441 YLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 441 yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
||+|++||+ | |+|+++|.+||||+
T Consensus 307 yl~al~~G~PP~~G~glGiDRL~m~l~~~~~Irdv 341 (353)
T d1eova2 307 YCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRA 341 (353)
T ss_dssp HHHHHTTCCCCEEEEEEEHHHHHHHHTTCSSGGGG
T ss_pred HHHHhHcCCCCCceeeeHHHHHHHHHhCCCcHHhe
Confidence 999999998 3 99999999999985
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Probab=100.00 E-value=2.7e-65 Score=515.74 Aligned_cols=305 Identities=17% Similarity=0.257 Sum_probs=248.2
Q ss_pred hhhhhhcceecC-CCccchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCC
Q 012426 128 REFLRTKAHLRP-RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDA 206 (464)
Q Consensus 128 ~~~~r~~r~l~~-R~~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~ 206 (464)
.|++.+|||||+ |++.++++|++||+|++++|+||.++||+||+||+|++++|+|++++|.+.
T Consensus 2 ~~~Rl~~R~lDl~r~~~~~~~~r~Rs~i~~~iR~ff~~~gFiEV~TPil~~~~~~~~~~~f~~~---------------- 65 (342)
T d1e1oa2 2 QEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITH---------------- 65 (342)
T ss_dssp TTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEE----------------
T ss_pred hHhhhhcchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCccccCCCCCCcceeec----------------
Confidence 356679999999 888999999999999999999999999999999999999999999999653
Q ss_pred CCCCCCCCccccccccCcccccccchhHHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccCCHHHHHHH
Q 012426 207 IPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMAC 285 (464)
Q Consensus 207 ~~~~~~~~~~~~~~~f~~~~yL~~Spql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~ 285 (464)
.++|+.++||+||||+||| ++++|++|||+||||||||++ ++||+|||||||||++|+|++|+|++
T Consensus 66 ------------~~~~~~~~yL~~Spql~~k~~l~~g~~~vf~i~p~FR~E~~-~~rHl~EFtmlE~e~a~~~~~d~m~~ 132 (342)
T d1e1oa2 66 ------------HNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGI-SVRHNPEFTMMELYMAYADYHDLIEL 132 (342)
T ss_dssp ------------ETTTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECCCCC-CC-CCSEEEEEEEEEESCCHHHHHHH
T ss_pred ------------ccCCCcccccchhhHHHHHHHhhhcccceeeeccccccccc-cccchHHHHHHHHHHHhhhhhhHHHh
Confidence 1578999999999999997 788999999999999999998 57999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCccc-----ccccccccccchHHHHhhhhC-CCCCCCCHHHHH-HHHHhcCCCcccCCCcccccc
Q 012426 286 ATAYLQYVVRYILDNCKED-----MDFFNTWIEKGIIDRLSTVAE-RDFVQLSYTDAI-ELLIKAKKKFEFLVKWGCDLQ 358 (464)
Q Consensus 286 ~e~li~~i~~~~~~~~~~~-----i~~~~~~~~~~~~~~l~~~~~-~~~~~it~~ea~-~~l~~~~~~~~~~~~~~~~l~ 358 (464)
+|+|+++++..+.+.+... .++..++.+.++.+.+..... .++..++..++. .+.++.|..++....|+..++
T Consensus 133 ~e~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (342)
T d1e1oa2 133 TESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVT 212 (342)
T ss_dssp HHHHHHHHHHHHHSSSEEEETTEEEETTSCCEEEEHHHHHHHHSTTCCGGGGGSHHHHHHHHHHTTCCCCTTCCHHHHHH
T ss_pred hhHHHHHHHHHHhCcchhhccchhcccCCchhhhhHHHHHHHHhccccHhhhhhhHHHHHHHHHcCCCcccccchhHHHH
Confidence 9999999999998876532 233345555566666655433 233344433433 344445655543334444444
Q ss_pred HHHHHHhhhhcccCCCeeeeeCCCCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHH------cC
Q 012426 359 SEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE------LK 432 (464)
Q Consensus 359 ~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~------~g 432 (464)
..+ ..+++.++. .|+||+|||..++|||++.++|+.++++|||+++| +||+|||+|+||++++.+||++ .+
T Consensus 213 ~~~-~~~~~~~~~-~p~fi~~~P~~~~~f~~~~~~~~~~~~~fdl~~~g-~El~~G~~r~~d~~~~~~r~~~~~~~~~~~ 289 (342)
T d1e1oa2 213 EIF-DEVAEAHLI-QPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGG-REIGNGFSELNDAEDQAERFQEQVNAKAAG 289 (342)
T ss_dssp HHH-HHHTGGGCC-SCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEETT-EEEEEEEEBCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHH-HHhhHhhcc-CCCcCCCCccccChhhccccccchhhhhhhcccCC-EeecCCccccCCHHHHHHHHHHHHHHHhcC
Confidence 444 445666666 89999999999999999988888999999999999 5999999999999999999864 23
Q ss_pred CCccc--hHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 433 LNRDS--YWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 433 ~~~~~--~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
.++.. ++|||+|++||+ | |+|+++|.+||||+
T Consensus 290 ~~~~~~~d~~yl~a~~~G~pPh~G~glG~dRlvm~l~g~~nIrdv 334 (342)
T d1e1oa2 290 DDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDV 334 (342)
T ss_dssp CTTCCCCCHHHHHHHHHHCCSEEEEEEEHHHHHHHHHTCSSGGGT
T ss_pred cchhhhhhHHHHHHhhCCCCCccchhHHHHHHHHHHhCCCcHHHh
Confidence 33332 489999999998 3 99999999999996
|
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Probab=100.00 E-value=2.6e-64 Score=500.74 Aligned_cols=284 Identities=27% Similarity=0.413 Sum_probs=211.0
Q ss_pred cceecCCCccchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 134 KAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 134 ~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
|||||+|++.++++|++||+|++++|+||.++||+||+||+|++++++|+.++|.+
T Consensus 1 yR~ldlr~~~~~~~l~~Rs~i~~~iR~ff~~~gf~Ev~TP~l~~~~~e~~~~~f~~------------------------ 56 (304)
T d1n9wa2 1 YRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGV------------------------ 56 (304)
T ss_dssp CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC----------------------------------------
T ss_pred CCeEEecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCCCCCceECC------------------------
Confidence 68999999999999999999999999999999999999999999999999988865
Q ss_pred CccccccccCcccccccchhHHHHHHhhccCceEEEccccccCCCCCccccccchhccceeccC-CHHHHHHHHHHHHHH
Q 012426 214 LIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQY 292 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql~lqll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-~~~dlm~~~e~li~~ 292 (464)
+++++++||++|||+|||++++|++|||+||||||||++.+.||+|||||||||++|. +++++|+++|++++.
T Consensus 57 ------~~~~~~~~L~~Spel~k~ll~~g~~~if~i~~~FR~ee~~~~rh~~EF~~le~~~~~~~~~~~~~~l~E~l~~~ 130 (304)
T d1n9wa2 57 ------DYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAE 130 (304)
T ss_dssp ------------------CHHHHHHHHHHHSEEEEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHHHHHH
T ss_pred ------cccccchhccccHHHHHHHhhcccccceeehhhcccccccccccccHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999987889999999999999997 589999999999999
Q ss_pred HHHHHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhh----h
Q 012426 293 VVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE----E 368 (464)
Q Consensus 293 i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e----~ 368 (464)
++..+.+++...+...+... .....+++++++.||+++++..- . ..++.+...+.++.|.+ +
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~e~~~~l~~~~-~----~~~~~~~~~~~~~~l~~~~~~~ 196 (304)
T d1n9wa2 131 MLEEALNTAGDEIRLLGATW---------PSFPQDIPRLTHAEAKRILKEEL-G----YPVGQDLSEEAERLLGEYAKER 196 (304)
T ss_dssp HHHHHHHHSHHHHHHTTCCC---------CCCSSSCCEEEHHHHHHHHHHTS-C----CCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhccce---------ecccchhhhhhHHHHHHHHHHHh-C----CCcCCCccHHHHHHHHHHHHhh
Confidence 99999888766555443321 12345788899999999988741 1 23455666666665543 3
Q ss_pred cccCCCeeeeeCCCCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhh
Q 012426 369 AFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYG 448 (464)
Q Consensus 369 ~~~~~p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G 448 (464)
.+. +|+||+|||+.++|||+.+.+ +++++|||||++|+ ||+|||+|++|+++|.+||+++|++++.++|||+|++||
T Consensus 197 ~~~-~~~fi~~~P~~~~p~~~~~~~-~~~a~rfel~~~G~-El~nG~~e~~d~~~l~~r~~~~~~~~e~~~~yl~al~~G 273 (304)
T d1n9wa2 197 WGS-DWLFVTRYPRSVRPFYTYPEE-DGTTRSFDLLFRGL-EITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYG 273 (304)
T ss_dssp TCC-SEEEEECCBGGGSCTTBCBCT-TSBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGBC
T ss_pred cCC-ceEEEeCChhhhCchhhcccc-cceeehhccccCcE-EEeccccccCCHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 344 799999999999999986544 46999999999997 999999999999999999999999999999999999999
Q ss_pred h--------h---HhhhhcCCCCCCCC
Q 012426 449 S--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 449 ~--------g---L~mll~~~~~I~~~ 464 (464)
+ | |+|+++|.+||+|+
T Consensus 274 ~PP~~G~glGiDRL~m~l~g~~~Irdv 300 (304)
T d1n9wa2 274 MPPHGGFAIGAERLTQKLLGLPNVRYA 300 (304)
T ss_dssp CCSEEEEEEEHHHHHHHHTTCSSGGGG
T ss_pred CCCCceeehHHHHHHHHHhCCCcHHhe
Confidence 8 3 99999999999985
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Probab=100.00 E-value=1.2e-63 Score=502.48 Aligned_cols=295 Identities=32% Similarity=0.532 Sum_probs=255.0
Q ss_pred ccchhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCC
Q 012426 125 RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPV 204 (464)
Q Consensus 125 ~~~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~ 204 (464)
..+.+++.++||||+|++.++++|++||+|++++|+||.++||+||+||+|++++++|++++|.+
T Consensus 11 ~~~~~~r~~~R~ldlr~~~~~~~l~~Rs~i~~~iR~ff~~~gflEV~TPil~~~~~~~~~~~f~~--------------- 75 (335)
T d1b8aa2 11 KAELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPM--------------- 75 (335)
T ss_dssp CCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCCSSSSSCCEE---------------
T ss_pred CCCHHHHhhchhheeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCccCCchhhhhccc---------------
Confidence 34667777999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCCCCCCCCccccccccCcccccccchhHHHH-HHhhccCceEEEccccccCCCCCccccccchhccceeccC-CHHHH
Q 012426 205 DAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDD 282 (464)
Q Consensus 205 ~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-~~~dl 282 (464)
+++++++||++|||+||+ ++++|++||||||||||||++++.||++||||+|+|+++. +++++
T Consensus 76 ---------------~~~~~~~yL~~SpE~~lkrll~~g~~~if~i~~~FR~e~~~~~rh~~Ef~~le~~~~~~~~~~~l 140 (335)
T d1b8aa2 76 ---------------KYFEEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEV 140 (335)
T ss_dssp ---------------EETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCCSSCCSEEEEEEEEEESCSSHHHH
T ss_pred ---------------cccccccccccChHHHHHHHHhhhhhhHHHhhcccccccccccccchHHHhhhHHHHHHHhhhhH
Confidence 346788999999999996 7899999999999999999998889999999998888885 79999
Q ss_pred HHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHH--
Q 012426 283 MACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE-- 360 (464)
Q Consensus 283 m~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~-- 360 (464)
|+++++++..+.+.+...+..++++++... ...+.||++++|+||++++++.+.++ .++.++..+
T Consensus 141 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~r~~~~e~~~~l~~~~~~~----~~~~~~~~~~~ 207 (335)
T d1b8aa2 141 MSFLERLVAHAINYVREHNAKELDILNFEL---------EEPKLPFPRVSYDKALEILGDLGKEI----PWGEDIDTEGE 207 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHTTCCC---------CCCCSSCCEEEHHHHHHHHHHTTCCC----CTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccchhhhhcccc---------ccCCCCcccccHHHHHHHHHhhcccc----Ccccccccccc
Confidence 999999999999998877665555443211 13467899999999999999887654 344444443
Q ss_pred --HHHHhhhhcccCCCeeeeeCCCCCcccccccCC-CCCceeeEEEeeCCccccccCccccccHHHHHHHHHHcCCCccc
Q 012426 361 --HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS 437 (464)
Q Consensus 361 --~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~~-d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~ 437 (464)
.+.++.+.... .|+||+|||..++|||+...+ ++++++|||||++|+ ||+|||+|++|+++|++|++++|++++.
T Consensus 208 ~~~~~~~~~~~~~-~~~fi~~~P~~~~pl~~~~~~~~~~~a~rfel~~~G~-El~nG~~e~~~~~~~~~r~~~~~~~~e~ 285 (335)
T d1b8aa2 208 RLLGKYMMENENA-PLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYRGV-EISSGGQREHRHDILVEQIKEKGLNPES 285 (335)
T ss_dssp HHHHHHHHHHHCC-SEEEEESCBGGGSCTTBCEETTEEEEESEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGG
T ss_pred cceeeeeeccccc-ccceeecChHHhhhccccccCCCcHHHHhhccccCce-eeecccchhcCHHHHHHHHHHcCCCHHH
Confidence 44444444333 678999999999999987654 457999999999997 9999999999999999999999999999
Q ss_pred hHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 438 YWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 438 ~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
++|||+|++||+ | |||+++|.+||||+
T Consensus 286 ~e~yl~al~~G~Pp~~G~glGiDRLvm~l~~~~~IrdV 323 (335)
T d1b8aa2 286 FEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREV 323 (335)
T ss_dssp GHHHHHTTSBCCCCEEEEEEEHHHHHHHHTTCSCGGGG
T ss_pred HHHHHHHhhcCCCCCceeeeHHHHHHHHHhCCCcHHhe
Confidence 999999999998 3 99999999999986
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=100.00 E-value=4.1e-62 Score=494.24 Aligned_cols=292 Identities=20% Similarity=0.287 Sum_probs=238.7
Q ss_pred CCCCCCcccc-------chhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCcee
Q 012426 117 PSYPIQKKRV-------SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189 (464)
Q Consensus 117 ~~~P~~~~~~-------~~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~v 189 (464)
|++|++.+++ +.+.+.++||||||++.++++||+||+|++++|+||.++||+||+||+|++++|+|++..|.+
T Consensus 2 ~~~p~~~~~~~~~~~~~~~~~Rl~~R~LdLR~~~~~~ilr~Rs~i~~~iR~ff~~~gfiEV~TP~L~~~~~eg~~~~~~~ 81 (356)
T d1l0wa3 2 PPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLVP 81 (356)
T ss_dssp CSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEEE
T ss_pred cCcccCcccccccccccCHHHHhhchhhhhCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCcccccchhh
Confidence 4588876544 334455999999999999999999999999999999999999999999999999999988854
Q ss_pred eecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHHH-HHhhccCceEEEccccccCCCCCccccccch
Q 012426 190 TTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFW 268 (464)
Q Consensus 190 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFt 268 (464)
+ .++++.++||++||||||| ++++|++|||+||||||||+++ +||+||||
T Consensus 82 ~----------------------------~~~~~~~~yL~~Spel~lk~ll~~g~~~Vf~i~~~FRaE~~~-t~H~~EFt 132 (356)
T d1l0wa3 82 Y----------------------------RHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLR-ADRQPDFT 132 (356)
T ss_dssp C----------------------------TTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCCC-SSCCSEEE
T ss_pred h----------------------------hcccccccCCCcChhHHHHHhhhcccCcEEEEeccccccccC-Ccchhhhh
Confidence 2 2578999999999999997 6789999999999999999996 58999999
Q ss_pred hccceeccCCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcc
Q 012426 269 MIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFE 348 (464)
Q Consensus 269 mlE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~ 348 (464)
|||||++|+|++++|+++|+|++++++.+++.+ ...+|++++|++|+..+........
T Consensus 133 mLE~e~~~~~~~~~m~~~E~li~~v~~~~~~~~----------------------~~~~f~r~~~~~a~~~~~~~~~~l~ 190 (356)
T d1l0wa3 133 QLDLEMSFVEVEDVLELNERLMAHVFREALGVE----------------------LPLPFPRLSYEEAMERYGSDKPDLR 190 (356)
T ss_dssp EEEEEEESCCHHHHHHHHHHHHHHHHHHHTCCC----------------------CCSSCCEEEHHHHHHHHSSSSCCCS
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhCCC----------------------CCCCCCcchHHhhHHHHhcCcHhHH
Confidence 999999999999999999999999998876432 2347999999999987755422111
Q ss_pred ---cCCCccccccH--HHHHHhhhhcccCCCeeeeeCCCCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHH
Q 012426 349 ---FLVKWGCDLQS--EHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEY 423 (464)
Q Consensus 349 ---~~~~~~~~l~~--~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~ 423 (464)
....|+.++.. ..+..... ... .|+|+++||...+++++. +++.+++|||||++|+ ||||||+|++|+++
T Consensus 191 ~~~~~~~~~~d~~~~~~~~~~~~~-~~~-~~~f~~~~p~~~~~~~~~--~~~~~a~~FdL~~~G~-ElanG~~r~~d~~~ 265 (356)
T d1l0wa3 191 REGFRFLWVVDFPLLEWDEEEEAW-TYM-HHPFTSPHPEDLPLLEKD--PGRVRALAYDLVLNGV-EVGGGSIRIHDPRL 265 (356)
T ss_dssp CCSCCEEEEECCBSBCCCTTTSCC-CBS-SCTTBCBCSTTTTHHHHC--GGGCBBSEEEEEETTE-EEEEEEEBCCCHHH
T ss_pred HHhhhhhhccccccccccchhcce-eee-eCCcccCChhhhchhhcC--CCcceeeeeecccCCE-EeeccEEEeCcHHH
Confidence 11224433221 01110011 123 688999999988766553 3456899999999997 99999999999999
Q ss_pred HHHHHHHcCCCcc----chHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 424 LEGRLDELKLNRD----SYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 424 l~~r~~~~g~~~~----~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
|++||++.|++++ .++|||+|++||+ | |+|+++|.+|||||
T Consensus 266 ~~~r~~~~~~~~~~~~~~~~~yl~a~~~G~PP~~G~glGldRLlm~l~g~~~Irdv 321 (356)
T d1l0wa3 266 QARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREV 321 (356)
T ss_dssp HHHHHHHHTCCTTTHHHHTHHHHHHTTBTCCCEEEEEEEHHHHHHHHHTCSSGGGG
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHhhCCCCCcceEEEcHHHHHHHHcCCCcHHhe
Confidence 9999999988763 4899999999998 3 99999999999986
|
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-61 Score=487.66 Aligned_cols=290 Identities=20% Similarity=0.255 Sum_probs=239.8
Q ss_pred CCCCccccc-hhhhhhcceecCCCccchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcc
Q 012426 119 YPIQKKRVS-REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSR 197 (464)
Q Consensus 119 ~P~~~~~~~-~~~~r~~r~l~~R~~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~ 197 (464)
+|++.+..+ .|.+.++||||+|++..+++|++||+|++++|+||.++||+||+||+|++++|+|++..|..+
T Consensus 2 lP~~~~~~~~~e~Rl~~R~LdLr~~~~~~ilr~Rs~i~~~iR~ff~~~gFlEV~TPiL~~~~~~g~~~~~~~~------- 74 (346)
T d1c0aa3 2 LPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPS------- 74 (346)
T ss_dssp CSSCTTSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEEEC-------
T ss_pred CCCCCCCCCCHHHHhhchHHhhCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCcccccccccc-------
Confidence 677765444 444559999999999999999999999999999999999999999999999999988877442
Q ss_pred cccCCCCCCCCCCCCCCccccccccCcccccccchhHHHH-HHhhccCceEEEccccccCCCCCccccccchhccceecc
Q 012426 198 EAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 276 (464)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~lq-ll~~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~ 276 (464)
..++++++||+|||||||| ++++|++|||+||||||||+++ .+|+|||||||||++|
T Consensus 75 ---------------------~~~~~~~~~L~~Spel~lk~ll~~g~~~Vf~i~~~FR~E~~~-~~H~~EFtmLE~e~a~ 132 (346)
T d1c0aa3 75 ---------------------RVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLR-ADRQPEFTQIDVETSF 132 (346)
T ss_dssp ---------------------SSSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCCB-TTBCSEEEEEEEEEES
T ss_pred ---------------------ccCCCccccCCcCHHHHHHHHhhcCCCceEEEeeeccccccC-chhhhHhhhhcccccc
Confidence 1466889999999999997 6788999999999999999996 6777999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccC----CC
Q 012426 277 ADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFL----VK 352 (464)
Q Consensus 277 ~~~~dlm~~~e~li~~i~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~----~~ 352 (464)
+|++++|+++|+|+++++..+.+.. -.+|++++|.||+..+.......... ..
T Consensus 133 ~~~~~~m~~~E~li~~l~~~~~~~~-----------------------~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~ 189 (346)
T d1c0aa3 133 MTAPQVREVMEALVRHLWLEVKGVD-----------------------LGDFPVMTFAEAERRYGSDKPDLRDESKWAPL 189 (346)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSCC-----------------------CCSCCEEEHHHHHHHHSCSSCCTTCSSCCCEE
T ss_pred ccHhHhHHHHHHHHHHHHHHHhCCc-----------------------CCccceeeHHHHHHHhcccccchhhHhhhhhh
Confidence 9999999999999999998876421 13578899999987665433221111 12
Q ss_pred ccccccHHHHHHhhhhcccCCCeeeeeCCCCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHcC
Q 012426 353 WGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELK 432 (464)
Q Consensus 353 ~~~~l~~~~e~~l~e~~~~~~p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g 432 (464)
|+.++... +. ..+.... .+++++++|...+|+++..++++.+++|||||++|+ ||+|||+|++|+++|++||++.|
T Consensus 190 ~~~~~~~~-~~-~~~~~l~-~~~~~~~~p~~~~~~~~~~~~~~~~a~~fdl~~~G~-El~nG~~rl~d~~~~~~r~~~~~ 265 (346)
T d1c0aa3 190 WVIDFPMF-ED-DGEGGLT-AMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGY-EVGGGSVRIHNGDMQQTVFGILG 265 (346)
T ss_dssp EEECCBSE-EE-CSSSCEE-ESSCTTBCBSSCCHHHHHHSCTTCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTT
T ss_pred cccccccc-ch-hccccee-eeEeeccccchhhHHHhccCCccccccccccCcCCE-EEechhhhhchHHHHHHHHHHhC
Confidence 33232211 11 1222223 577889999999999998888889999999999996 99999999999999999999999
Q ss_pred CCc----cchHHHHHHhhhhh--------h---HhhhhcCCCCCCCC
Q 012426 433 LNR----DSYWWYLDLRHYGS--------G---LVFILIKVTNFLNC 464 (464)
Q Consensus 433 ~~~----~~~~~yl~~~~~G~--------g---L~mll~~~~~I~~~ 464 (464)
+++ +.++|||+|++||| | |+|+++|.+||||+
T Consensus 266 ~~~~~~~e~~~~ylda~~~G~PP~~G~glGldRL~m~l~g~~~Irdv 312 (346)
T d1c0aa3 266 INEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDV 312 (346)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCCCEEEEEEEHHHHHHHHHTCSCGGGG
T ss_pred ccccchHHHHHHHHHHHHCCCCCceeEeEHHHHHHHHHcCCCcHHhe
Confidence 987 66899999999998 3 99999999999985
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.1e-59 Score=463.42 Aligned_cols=263 Identities=20% Similarity=0.312 Sum_probs=217.8
Q ss_pred ecCCCccchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 012426 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (464)
Q Consensus 137 l~~R~~~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
||+|++..+++|++||+|++++|+||.++||+||+||+|++........++. +... .
T Consensus 3 l~l~~~~~~~il~~Rs~i~~~iR~ff~~~gf~EV~tPil~~~~~~~~~~~~~-~~~~----------------------~ 59 (293)
T d1nnha_ 3 VEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAG-EGME----------------------P 59 (293)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTC-CCCC----------------------C
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcCCcccccCCCCCCcccc-Cccc----------------------c
Confidence 7899999999999999999999999999999999999999764433222221 1100 0
Q ss_pred ccccccCcccccccchhHHHH-HHhhccCceEEEccccccCCC--CCccccccchhccceeccCCHHHHHHHHHHHHHHH
Q 012426 217 WSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENS--NTSRHLAEFWMIEPELAFADLKDDMACATAYLQYV 293 (464)
Q Consensus 217 ~~~~~f~~~~yL~~Spql~lq-ll~~g~~rVfeI~~~FR~E~~--~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i 293 (464)
++.+||++++||++||||||| +|++|++||||||||||||++ +|+||||||||||||++|+|++|+|+++|++++++
T Consensus 60 ~~~~~~~~~~yL~~SPel~lk~lla~g~~~Vf~I~~~FR~E~~~s~t~RH~~EFtmLE~e~~~~d~~d~m~~~e~li~~~ 139 (293)
T d1nnha_ 60 AEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGL 139 (293)
T ss_dssp CEEEETTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHH
T ss_pred ccccCCCceeecccChhhhHHHHHHhccccceeechhhhcCcccCCCCccchhhhhhccccccccHHHHHHHHHHHHHHH
Confidence 223789999999999999997 789999999999999999964 46799999999999999999999999999999999
Q ss_pred HHHHhhcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCC
Q 012426 294 VRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGC 373 (464)
Q Consensus 294 ~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~ 373 (464)
++.+.+.+..++. ...+|++++|.||++.+ |.|... .+. .. .
T Consensus 140 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~eal~~~-------------g~d~~~------~~~-~~-~ 181 (293)
T d1nnha_ 140 FRKAEEWTGREFP-----------------KTKRFEVFEYSEVLEEF-------------GSDEKA------SQE-ME-E 181 (293)
T ss_dssp HHHHHHHHSSCCC-----------------CCSSCEEEEHHHHHHHT-------------SSHHHH------HHH-CS-S
T ss_pred HHHHHHHhCcccc-----------------cCCccccccHHhhhccc-------------Cccccc------ccc-cc-c
Confidence 9988765433331 22468899999997642 222211 111 23 7
Q ss_pred CeeeeeCCCCCcccccccCCCCCceeeEEEeeCCccccccCccccccHHHHHHHHHHcCCCccchHHHHHHhhhh-h---
Q 012426 374 PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYG-S--- 449 (464)
Q Consensus 374 p~fI~~yP~~~~pfy~~~~~d~~~~~~fdl~~~GigEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~~~~~G-~--- 449 (464)
|+|++||| ++||++..++...+.+|+++++| +||+|||+|+|||++|++||+++|++++.++|||+|++|| |
T Consensus 182 p~~~~~~p---~~f~~~~~~~~~~~~~~~l~~~g-~Elang~~el~d~~~~~~r~~~~gl~~e~~~~yl~a~~~G~mPP~ 257 (293)
T d1nnha_ 182 PFWIINIP---REFYDREVDGFWRNYDLILPYGY-GEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPS 257 (293)
T ss_dssp CEEEECCC---CCTTBCEETTEECEEEEEETTTT-EEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHHHHTTCCCCE
T ss_pred ceeccccc---hhhcccccccccccceeEecccC-cccccccccccCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Confidence 99999999 56998877666678889999899 5999999999999999999999999999999999999999 6
Q ss_pred -----h---HhhhhcCCCCCCCC
Q 012426 450 -----G---LVFILIKVTNFLNC 464 (464)
Q Consensus 450 -----g---L~mll~~~~~I~~~ 464 (464)
| |+|+++|.+||||+
T Consensus 258 ~G~glGiDRL~m~l~g~~~Irdv 280 (293)
T d1nnha_ 258 AGAGIGVERLVRFIVGAKHIAEV 280 (293)
T ss_dssp EEEEEEHHHHHHHHHTCSSGGGG
T ss_pred CeEeehHHHHHHHHhCCCcHHhe
Confidence 2 99999999999985
|
| >d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Probab=99.86 E-value=2.3e-21 Score=159.91 Aligned_cols=97 Identities=16% Similarity=0.302 Sum_probs=88.3
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc---chhhhhcCCCCCCcEE
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVKSGLITTGASI 86 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~---~~~~~~~~~l~~g~~V 86 (464)
|+|+|.+|.+. ..|+.|+|+|||+++|.+|+++|++|||++|. +|||++++.. .|+.++. |+.||+|
T Consensus 3 RTh~~~el~~~------~~G~~V~v~Gwv~~~R~~g~i~Fi~LrD~sg~--iQ~v~~~~~~~~~~~~~~~~--l~~es~v 72 (103)
T d1b8aa1 3 RTHYSSEITEE------LNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGI--VQITAPKKKVDPELFKLIPK--LRSEDVV 72 (103)
T ss_dssp CSCCGGGCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEEETTTSCHHHHHHGGG--CCTTCEE
T ss_pred cccChhhCChh------HCCCEEEEEEEEehhccCCCcEEEEEEcCCEe--eeEEEeccccchhhhhHHhh--CCcceEE
Confidence 78999999874 78999999999999999999999999999985 9999987652 2666788 9999999
Q ss_pred EEEEEEEeCCCCCceEEEEEeeEEEEecCC
Q 012426 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSD 116 (464)
Q Consensus 87 ~V~G~v~~~~~~~~~~el~~~~i~vls~~~ 116 (464)
.|+|++.+++.+++++||++++++|||+|.
T Consensus 73 ~V~G~v~~~~~~~~~iEi~v~~i~ils~a~ 102 (103)
T d1b8aa1 73 AVEGVVNFTPKAKLGFEILPEKIVVLNRAE 102 (103)
T ss_dssp EEEEEEEECTTSTTSEEEEEEEEEEEECBC
T ss_pred EEEEEEEECCCCCccEEEEeeEEEEEEecC
Confidence 999999999988888999999999999985
|
| >d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Probab=99.84 E-value=1.7e-20 Score=151.85 Aligned_cols=92 Identities=17% Similarity=0.290 Sum_probs=82.2
Q ss_pred ceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEE
Q 012426 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90 (464)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G 90 (464)
++.|+||.+ +.|++|+|+|||+++|.+|+++|++|||++|. +||+++... . +..||+|.|+|
T Consensus 2 R~~I~dl~~-------~~g~~V~v~GwV~~~R~~gk~~Fi~LrD~sg~--iQ~v~~~~~-------~--~~~e~~v~v~G 63 (93)
T d1n9wa1 2 RVLVRDLKA-------HVGQEVELLGFLHWRRDLGRIQFLLLRDRSGV--VQVVTGGLK-------L--PLPESALRVRG 63 (93)
T ss_dssp BCCGGGGGG-------CTTSEEEEEEEEEEEEECSSEEEEEEEETTEE--EEEEEESCC-------C--CCTTCEEEEEE
T ss_pred cEEhHHhhh-------cCCCEEEEEEEEEeEEeCCCcEEEEEEcCCcc--ceEEecccc-------c--cccceEEEEEE
Confidence 357888854 68999999999999999999999999999985 999998652 3 89999999999
Q ss_pred EEEeCCCCCceEEEEEeeEEEEecCCCCCC
Q 012426 91 NVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120 (464)
Q Consensus 91 ~v~~~~~~~~~~el~~~~i~vls~~~~~~P 120 (464)
+|.+++.+.+++||+++++++||+|..++|
T Consensus 64 ~v~~~~~~~~~~Ei~v~~i~il~~a~~plP 93 (93)
T d1n9wa1 64 LVVENAKAPGGLEVQAKEVEVLSPALEPTP 93 (93)
T ss_dssp EEEECTTSTTSEEEEEEEEEEEECCCSCCC
T ss_pred EEEECCCCCCCEEEEEeEEEEEecCCCCCC
Confidence 999999877889999999999999986665
|
| >d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=99.83 E-value=2.3e-20 Score=153.65 Aligned_cols=97 Identities=19% Similarity=0.355 Sum_probs=87.0
Q ss_pred ccceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEE
Q 012426 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88 (464)
Q Consensus 9 ~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V 88 (464)
.|||+|.+|.+. ++|++|+|+|||+++|.+|+++|++|||++|. +|++++.+...|+.+++ |+.||+|.|
T Consensus 2 ~RTh~~geL~~~------~~g~~V~l~GWV~~~R~~g~i~Fi~LRD~~G~--iQ~v~~~~~~~~~~~~~--l~~Es~I~V 71 (104)
T d1l0wa1 2 RRTHYAGSLRET------HVGEEVVLEGWVNRRRDLGGLIFLDLRDREGL--VQLVAHPASPAYATAER--VRPEWVVRA 71 (104)
T ss_dssp CCSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTEE--EEEEECTTSTTHHHHTT--CCTTCEEEE
T ss_pred ccccccccCChH------HCCCEEEEEEEEEehhcCCCeEEEEEECCCCc--eEEecccchhHHHHHhh--cCcccEEEE
Confidence 478999999874 79999999999999999999999999999985 99999987777888888 999999999
Q ss_pred EEEEEeCCC-----CCceEEEEEeeEEEEecC
Q 012426 89 QGNVVPSQG-----SKQKVELKVNKIVLVGKS 115 (464)
Q Consensus 89 ~G~v~~~~~-----~~~~~el~~~~i~vls~~ 115 (464)
+|+|.+++. ..+++||++++++|||+|
T Consensus 72 ~G~V~~r~~~n~~~~tG~iEi~v~~i~iL~~a 103 (104)
T d1l0wa1 72 KGLVRLRPEPNPRLATGRVEVELSALEVLAEA 103 (104)
T ss_dssp EEEEEECSSCCTTSTTTTEEEEEEEEEEEECC
T ss_pred EEEEeeCCccCCCCCCCCEEEEEeEEEEEEcC
Confidence 999987653 235699999999999997
|
| >d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=4.9e-20 Score=152.48 Aligned_cols=97 Identities=18% Similarity=0.367 Sum_probs=84.3
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCcc-chhhhhcCCCCCCcEEEE
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLITTGASIWI 88 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~-~~~~~~~~~l~~g~~V~V 88 (464)
|+|+|.+|.+. ++|++|+|+|||+++|.+|+++|++|||++|. +|+++..+.. .++.++. |+.||+|.|
T Consensus 2 Rth~cgeL~~~------~~g~~V~v~GWv~~~R~~g~i~Fi~LRD~~G~--~Q~v~~~~~~~~~~~~~~--l~~Es~v~V 71 (106)
T d1c0aa1 2 RTEYCGQLRLS------HVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI--VQVFFDPDRADALKLASE--LRNEFCIQV 71 (106)
T ss_dssp CSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTEE--EEEEECGGGHHHHHHHTT--CCTTCEEEE
T ss_pred CceEcccCChH------HCCCEEEEEEEEEEeeeCCCcEEEEEEcCCeE--EeEEecccchhHHHHHHh--hCccceEEE
Confidence 78999999874 79999999999999999999999999999985 9999986643 3455777 999999999
Q ss_pred EEEEEeCCCC-------CceEEEEEeeEEEEecCC
Q 012426 89 QGNVVPSQGS-------KQKVELKVNKIVLVGKSD 116 (464)
Q Consensus 89 ~G~v~~~~~~-------~~~~el~~~~i~vls~~~ 116 (464)
+|+|.+++.+ .+++||++++++|||+|+
T Consensus 72 ~G~V~~r~~~~~n~~~~tg~iEi~v~~i~vl~~ad 106 (106)
T d1c0aa1 72 TGTVRARDEKNINRDMATGEIEVLASSLTIINRAD 106 (106)
T ss_dssp EEEEEECCTTTCCTTSTTTTEEEEEEEEEEEECCC
T ss_pred EeEEeccCccccCCCCCCCcEEEEEeEEEEEeCCC
Confidence 9999886542 246999999999999984
|
| >d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Probab=99.80 E-value=1e-19 Score=158.39 Aligned_cols=110 Identities=18% Similarity=0.290 Sum_probs=93.1
Q ss_pred CcccccceecccccCCCCCCC----CCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCc---cchhhh-h
Q 012426 5 VGEFRKKLKIVDVKGGPNEGL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQV-K 76 (464)
Q Consensus 5 ~~~~~~~~~i~~l~~~~~~~~----~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~---~~~~~~-~ 76 (464)
.++|.++++++++.+.|+..+ ...+..|+|+|||.++|.+||++|++|+|.+| +||++++++. ..|+.+ +
T Consensus 26 P~~~~~t~~~~ei~~~~~~~~~~~~~~~~~~V~vaGRI~~~R~~Gk~~F~~i~D~~g--~iQi~~~~~~~~~~~~~~~~k 103 (143)
T d1e1oa1 26 PNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGG--RIQLYVARDSLPEGVYNDQFK 103 (143)
T ss_dssp CCCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEETTTSSTTHHHHTGG
T ss_pred CCCCcCCccHHHHHHHHhcccchhhhccCceEEEEEEEEEEcccCCeeEEEEEeCCc--eEEEEEccccchhhhHHHHHh
Confidence 578999999999998765421 12367899999999999999999999999997 5999999764 235543 6
Q ss_pred cCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEEEEecCCCCCC
Q 012426 77 SGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120 (464)
Q Consensus 77 ~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~~~~~P 120 (464)
. ++.||+|+|+|.+.+|++|+ ++|.|+++++|+||..++|
T Consensus 104 ~--ld~GDiIgv~G~~~~TktGE--lsi~~~~~~lLsK~l~PLP 143 (143)
T d1e1oa1 104 K--WDLGDIIGARGTLFKTQTGE--LSIHCTELRLLTKALRPLP 143 (143)
T ss_dssp G--CCTTCEEEEEEEEEECTTCC--EEEEEEEEEEEECCSSCCC
T ss_pred c--CCcccEEEeecccEECCCCc--EEEEeeEEEEeccccCCCC
Confidence 6 99999999999999999877 9999999999999995555
|
| >d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.74 E-value=1.1e-17 Score=144.09 Aligned_cols=99 Identities=17% Similarity=0.313 Sum_probs=81.8
Q ss_pred cceecccccCCCCCCCCCCCCEEEEEEEEeeeecCC-CeEEEEEEeCcCCcceEEEEeCCcc---c---hhhhhcCCCCC
Q 012426 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAE---G---YDQVKSGLITT 82 (464)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g-~~~Fi~LrD~sg~~~iQvv~~~~~~---~---~~~~~~~~l~~ 82 (464)
.+..+.++... ++.|+.|+|+|||+++|.+| +++|++|||++| .+|+++..+.. . ++.++. |+.
T Consensus 22 ~r~~i~dl~~~-----~~~g~~V~v~GwV~~~R~~G~kl~F~~LrD~sg--~iQ~~v~~~~~~~~~~~~~~~~~~--l~~ 92 (134)
T d1eova1 22 KRVKFVDLDEA-----KDSDKEVLFRARVHNTRQQGATLAFLTLRQQAS--LIQGLVKANKEGTISKNMVKWAGS--LNL 92 (134)
T ss_dssp CCCCGGGCCTT-----TTTTCEEEEEEEEEEEEECSSSEEEEEEEETTE--EEEEEEECCSSSSSCHHHHHHHTT--CCT
T ss_pred EEEEeccccch-----hcCCCEEEEEEEEEEEEeCCCcEEEEEEEcCCC--cEEEEEEeccccchhHHHHHHHhc--CCC
Confidence 34556666553 57899999999999999997 699999999997 49999997642 1 234577 999
Q ss_pred CcEEEEEEEEEeCCCC-----CceEEEEEeeEEEEecCCC
Q 012426 83 GASIWIQGNVVPSQGS-----KQKVELKVNKIVLVGKSDP 117 (464)
Q Consensus 83 g~~V~V~G~v~~~~~~-----~~~~el~~~~i~vls~~~~ 117 (464)
||+|.|+|+|.+++.. .+++||++++|+|||+|..
T Consensus 93 es~V~V~G~v~~~~~~~~~~~~~~~Ei~v~~i~vls~a~~ 132 (134)
T d1eova1 93 ESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPE 132 (134)
T ss_dssp TCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCCS
T ss_pred CCEEEEEEEEEeCCccCCCCCCCcEEEEEEEEEEEeCCCC
Confidence 9999999999998643 5789999999999999973
|
| >d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS species: Thermus thermophilus [TaxId: 274]
Probab=98.55 E-value=3.8e-08 Score=92.32 Aligned_cols=137 Identities=12% Similarity=0.046 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccccc--
Q 012426 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFL-- 228 (464)
Q Consensus 151 rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL-- 228 (464)
-+.+++.++++|.+.||.|++.|.+.+.-. ....+|....|+++..+++.. ++.-....++. ++.+ .....-|
T Consensus 19 l~~~~~~i~~if~~~GF~~~~gp~ies~~~-NFDaLn~P~dHPAR~~~DTfY-i~~~~~~~~~~--~~~~-~~~~~lLRT 93 (266)
T d1jjca_ 19 ITLMERELVEIFRALGYQAVEGPEVESEFF-NFDALNIPEHHPARDMWDTFW-LTGEGFRLEGP--LGEE-VEGRLLLRT 93 (266)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHH-HTGGGTCCTTSGGGGGSCCCB-EECSSCCEECT--TSCE-ECSCEEECS
T ss_pred HHHHHHHHHHHHHHcCCeEeeCCccccchh-hhhcccCCcccchhcccceEE-EecccccccCc--cccc-chhhhhhcc
Confidence 356778999999999999999998875422 233444333333322111100 00000000000 0000 0111223
Q ss_pred ccchhHHHHHHhhcc--CceEEEccccccCCCCCccccccchhccceeccC--CHHHHHHHHHHHHHHHH
Q 012426 229 TVSGQLNAETYATAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYVV 294 (464)
Q Consensus 229 ~~Spql~lqll~~g~--~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--~~~dlm~~~e~li~~i~ 294 (464)
++|+-. -+.|..+. -|++.+|+|||+|..| .+|.|+|+|+|.-+... ++.+++..++.+++.++
T Consensus 94 HTS~~q-~r~~~~~~~p~~~~~~g~VyRrd~iD-~tH~p~FhQ~eg~~vd~~~~~~~Lk~~l~~~~~~~f 161 (266)
T d1jjca_ 94 HTSPMQ-VRYMVAHTPPFRIVVPGRVFRFEQTD-ATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALF 161 (266)
T ss_dssp SSTHHH-HHHHHHSCSSEEEEEEEEEECCSCCC-SSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred CCcHHH-HHHHhccCCCceEEecccceecCCCC-CcccccceeeeeeeccccccHHHHHHHHHHHHHHhc
Confidence 233311 14555554 3799999999999996 89999999999988775 58999988888887653
|
| >d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=98.00 E-value=4.6e-06 Score=79.44 Aligned_cols=119 Identities=12% Similarity=0.083 Sum_probs=81.5
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-CC-------CCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EG-------AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-eg-------~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
..-.+++.+|.+.+++.+.+.||.||.||.|.+... ++ ..++|.++...
T Consensus 27 p~G~~l~~~L~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sG~~~~~~~~~~~~~~~~----------------------- 83 (291)
T d1nyra4 27 PNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLD----------------------- 83 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEET-----------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCEEEECccccchhHhhhhccccccccceEEEeecc-----------------------
Confidence 445788999999999999999999999999998642 11 12333322110
Q ss_pred ccccccCcccccccchhHHHHHHhh-c------c-CceEEEccccccCCCCC---ccccccchhccceeccCCHHHHHHH
Q 012426 217 WSQDFFEKPAFLTVSGQLNAETYAT-A------L-SNVYTFGPTFRAENSNT---SRHLAEFWMIEPELAFADLKDDMAC 285 (464)
Q Consensus 217 ~~~~~f~~~~yL~~Spql~lqll~~-g------~-~rVfeI~~~FR~E~~~t---~rHl~EFtmlE~e~a~~~~~dlm~~ 285 (464)
-+..++|....+-..-.+.. . + -|+|++++|||+|.+.. -.=.-||+|.|.+. |.+-++..+.
T Consensus 84 -----~~~~~~L~pt~e~~~~~~~~~~~~sy~dLPlr~~~~~~~fR~E~~~~~~Gl~Rvr~F~~~d~~~-f~~~eq~~~e 157 (291)
T d1nyra4 84 -----ETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHI-FVRPDQIKEE 157 (291)
T ss_dssp -----TTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHHHH
T ss_pred -----ccccccccccchhHHHHhhhcEeccccccceEEeeccceeecCCCcccccccceeeeeeeehee-ecCCcccHHH
Confidence 13456788888777743332 2 3 38999999999998632 11234999999987 5566666666
Q ss_pred HHHHHHH
Q 012426 286 ATAYLQY 292 (464)
Q Consensus 286 ~e~li~~ 292 (464)
+++++..
T Consensus 158 ~~~~~~~ 164 (291)
T d1nyra4 158 FKRVVNM 164 (291)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666644
|
| >d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Lactococcus lactis [TaxId: 1358]
Probab=97.90 E-value=1.1e-05 Score=77.48 Aligned_cols=102 Identities=17% Similarity=0.187 Sum_probs=63.1
Q ss_pred hhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC------CCC----CCCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 012426 146 AVARVRNALAYATHKFFQENGFIWISSPIITASD------CEG----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (464)
Q Consensus 146 ~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~------~eg----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (464)
.-.+.+..+...+++.|..+||.+|.||++...+ ..+ ..+.|...+.+
T Consensus 13 ~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~d~~---------------------- 70 (318)
T d1z7ma1 13 NQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHE---------------------- 70 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTT----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHhhccCCCcccccccceeEeecCC----------------------
Confidence 3467788899999999999999999999996532 111 12345443211
Q ss_pred cccccccCccccccc--chhHHHHHHh----hccCceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 216 DWSQDFFEKPAFLTV--SGQLNAETYA----TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 216 ~~~~~~f~~~~yL~~--Spql~lqll~----~g~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
|+.+-|+. .+++. |+++ ....|+|++|+|||.|... ..+..||+|+.+|.-+.+
T Consensus 71 -------g~~l~LRpD~T~~ia-R~~~~~~~~~~~r~~Y~g~vfR~~~~~-~~r~rE~~Q~g~EiiG~~ 130 (318)
T d1z7ma1 71 -------GQSITLRYDFTLPLV-RLYSQIKDSTSARYSYFGKIFRKEKRH-KGRSTENYQIGIELFGES 130 (318)
T ss_dssp -------CCEEEECCCSHHHHH-HHHHTCCSCCCEEEEEEEECCCCCC--------CCEEEEEEEESSC
T ss_pred -------ccEEEeeccccchHH-HHHHHhcccCCcccccccceeEEcccc-ccccchhhhhheeccccc
Confidence 23333321 12221 3332 2346899999999999874 456779999999987765
|
| >d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.68 E-value=9.6e-05 Score=68.76 Aligned_cols=126 Identities=15% Similarity=0.103 Sum_probs=81.8
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC-CCCCC--------CCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD-CEGAG--------EQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~-~eg~~--------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
....-.+++.+|.+.+++.+.+.||.||.||.|.... .+..+ ++|.+.....
T Consensus 35 ~lP~G~~l~~~l~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sg~~~~~~~~~m~~~~~~~~------------------- 95 (272)
T d1hc7a2 35 VRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGG------------------- 95 (272)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESS-------------------
T ss_pred ECccHHHHHHHHHHHHHHHHHHcCCeEEeeccccchHHhhhcccchhhcccceeeeecccc-------------------
Confidence 3455689999999999999999999999999887754 33222 2332221110
Q ss_pred CccccccccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCCCCc-cccccchhccceeccCCHHHHHH
Q 012426 214 LIDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTS-RHLAEFWMIEPELAFADLKDDMA 284 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~~t~-rHl~EFtmlE~e~a~~~~~dlm~ 284 (464)
+--+.+.+|+...+-.. .++... + -|+|++++|||+|.+... .=.-+|.|.+.+....+..+...
T Consensus 96 ------~~~~~~~~L~pt~e~~~~~~~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~r~r~~~~~~~~~~~~~~~~~~~ 169 (272)
T d1hc7a2 96 ------EELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEE 169 (272)
T ss_dssp ------SEEEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHH
T ss_pred ------ccccchhhcccccccceeehhhceeccccccceeeeecccccccccccccccceEEEEEEhhhhhhcccccchh
Confidence 11134567777777655 333322 2 389999999999976321 01237889999987777777766
Q ss_pred HHHHHHHHH
Q 012426 285 CATAYLQYV 293 (464)
Q Consensus 285 ~~e~li~~i 293 (464)
..++++...
T Consensus 170 ~~~~~~~~~ 178 (272)
T d1hc7a2 170 EVRRMLSIY 178 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655443
|
| >d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=2.7e-05 Score=73.90 Aligned_cols=124 Identities=12% Similarity=0.141 Sum_probs=85.0
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-C--C-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-e--g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
..-.+++.+|.+.+|+.+.+.||.||.||.|.+.+. + | ..++|.++.
T Consensus 27 P~G~~l~~~L~~~i~e~~~~~G~~eV~~P~L~~~~l~~~sG~~~~~~~~~~~~~~------------------------- 81 (291)
T d1qf6a4 27 NDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSS------------------------- 81 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEEE-------------------------
T ss_pred cCHHHHHHHHHHHHHHHHHHcCCEEEEcccccchhHHhhhchhhhccchhccccc-------------------------
Confidence 345788899999999999999999999999998642 1 1 123332211
Q ss_pred ccccccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCCC---CccccccchhccceeccCCHHHHHHH
Q 012426 217 WSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSN---TSRHLAEFWMIEPELAFADLKDDMAC 285 (464)
Q Consensus 217 ~~~~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~~---t~rHl~EFtmlE~e~a~~~~~dlm~~ 285 (464)
-+..++|....+-.. .++... + -|+||+++|||+|.+- +-.=.-||+|-|.+. |..-++.++.
T Consensus 82 -----~~~~~~L~Pt~e~~~~~~~~~~~~sy~~LPl~~~q~~~~fR~E~~~~~~Gl~R~reF~~~d~h~-f~~~e~~~~e 155 (291)
T d1qf6a4 82 -----ENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCTEEQIRDE 155 (291)
T ss_dssp -----TTEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EECGGGHHHH
T ss_pred -----cchhhcccccCcHHHHHHHHccccchhhcCeeEeecceeeecccccccccccccccceecccee-EecchhhHHH
Confidence 134567777777655 444332 2 4899999999999542 222456999999998 6666677777
Q ss_pred HHHHHHHHHHHHhhc
Q 012426 286 ATAYLQYVVRYILDN 300 (464)
Q Consensus 286 ~e~li~~i~~~~~~~ 300 (464)
++++++.+. .+...
T Consensus 156 ~~~~~~~~~-~i~~~ 169 (291)
T d1qf6a4 156 VNGCIRLVY-DMYST 169 (291)
T ss_dssp HHHHHHHHH-HHHGG
T ss_pred HHHHHHHHH-HHHHH
Confidence 777765443 45443
|
| >d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.41 E-value=0.00024 Score=68.03 Aligned_cols=103 Identities=14% Similarity=0.157 Sum_probs=69.3
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC------C-CCCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC------E-GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~------e-g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (464)
+.+-.+.+..+...+++.|.++||.+|.||+|...+. + -..++|..++.+
T Consensus 14 ~p~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~f~D~~----------------------- 70 (327)
T d1wu7a2 14 YPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKG----------------------- 70 (327)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTT-----------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeEeECCccchHhhccccCchhHHHHHhhhhccc-----------------------
Confidence 4556788899999999999999999999999976431 1 123345443221
Q ss_pred ccccccCcccccccchhHHH---HHHhh--c--c-CceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 217 WSQDFFEKPAFLTVSGQLNA---ETYAT--A--L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 217 ~~~~~f~~~~yL~~Spql~l---qll~~--g--~-~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
|+.+.|+ |.+=. +.++. . . -|+|++|+|||.+... ..+.-||+|+.+|.-+.+
T Consensus 71 ------g~~l~LR--pD~T~~iar~~~~~~~~~~p~k~~y~g~VfR~~~~~-~g~~re~~Q~G~EiiG~~ 131 (327)
T d1wu7a2 71 ------GREVTLI--PEATPSTVRMVTSRKDLQRPLRWYSFPKVWRYEEPQ-AGRYREHYQFNADIFGSD 131 (327)
T ss_dssp ------SCEEEEC--SCSHHHHHHHHTTCTTCCSSEEEEECCEEECCCCSC-SSCCSEEEEEEEEEESCC
T ss_pred ------chhhccc--ccccchhhhHhhhhhhccccceeeccCcceeccccc-cCCcchhhhhhhhhcCCc
Confidence 2222222 22222 22222 1 2 3999999999999874 556679999999998775
|
| >d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
Probab=97.36 E-value=0.00028 Score=65.85 Aligned_cols=122 Identities=16% Similarity=0.131 Sum_probs=77.6
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC----CCC-----CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD----CEG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~----~eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
...-.+++.+|.+.+|+.+.+.||.||.||.|.+.. +.+ ..+.|.++....
T Consensus 31 lP~G~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~ks~~~~~~~~~~~~~~~~~~~-------------------- 90 (268)
T d1nj8a3 31 LPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGK-------------------- 90 (268)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSS--------------------
T ss_pred CccHHHHHHHHHHHHHHHHHHcCCeEEeehhhhhhHhhhccCCCccccccceeEEecccc--------------------
Confidence 345678999999999999999999999999998633 111 122333322110
Q ss_pred ccccccccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCCCCcc---ccccchhcc-ceeccCCHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSR---HLAEFWMIE-PELAFADLKDD 282 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~~t~r---Hl~EFtmlE-~e~a~~~~~dl 282 (464)
+=-+.+++|....+-.. .++... + =|+|++|+|||+|.+. .+ =.-||+++| .+....+-++.
T Consensus 91 -----~~~~~~~~L~P~~~~~~~~i~~~~~~Syr~LP~r~~e~~~~fR~E~~~-~~GllR~reF~~~dd~~~~~~~~~~~ 164 (268)
T d1nj8a3 91 -----TQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKH-TRPLIRLREIMTFKEAHTAHSTKEEA 164 (268)
T ss_dssp -----SEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSC-CBTTTBCSBCSCEEEEEEEESSHHHH
T ss_pred -----ccchhhhhcccCCCchhHHhhhhhccchhhhheEEeeccccccccccc-cccceeEEEEeeechhceeccccchh
Confidence 00123467777776665 554432 2 4899999999999542 11 134898555 56666677666
Q ss_pred HHHHHHHHH
Q 012426 283 MACATAYLQ 291 (464)
Q Consensus 283 m~~~e~li~ 291 (464)
.+..+.++.
T Consensus 165 ~~~~~~~~~ 173 (268)
T d1nj8a3 165 ENQVKEAIS 173 (268)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 666665553
|
| >d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=97.26 E-value=0.0003 Score=67.12 Aligned_cols=105 Identities=17% Similarity=0.234 Sum_probs=61.8
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC------CC----CCCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EG----AGEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~------eg----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
.....+.|..|.+.+++.|..+||.+|.||++...+. +. ....|....
T Consensus 12 lp~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~~~d---------------------- 69 (325)
T d1qe0a2 12 LPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKD---------------------- 69 (325)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECH----------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeEeeCcccccHHHhccccCCchhHHHHHHhhhhc----------------------
Confidence 3445688999999999999999999999999986431 11 112332211
Q ss_pred CccccccccCcccccccchhHHH-HHHh-hc----c---CceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 214 LIDWSQDFFEKPAFLTVSGQLNA-ETYA-TA----L---SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~Spql~l-qll~-~g----~---~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
-.+....|+..+..-. +.++ .. . -|+|.+|+|||.+.....|. -||+|+.+|.-+.+
T Consensus 70 -------~~~~~~~lr~d~t~~~~r~~~~~~~~~~~~~p~R~~Y~g~VfR~~~~~~~~~-rE~~Q~G~EiiG~~ 135 (325)
T d1qe0a2 70 -------KGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRY-RQFNQFGVEAIGAE 135 (325)
T ss_dssp -------HHHCCEEECSCSHHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC-------C-CEEEEEEEEEESCC
T ss_pred -------cccccccccccccccHHHHHHhhccccccccchhhheecceeeeccccCCcc-ceeeecceeecCCc
Confidence 0122222332222222 2221 11 1 38999999999998754444 69999999998764
|
| >d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.26 E-value=0.00016 Score=69.78 Aligned_cols=148 Identities=14% Similarity=0.146 Sum_probs=79.2
Q ss_pred hhhhhHHHHHHHHHHHHh--hhCCcEEEeCceEeecC-C--CCCCCCceeeecCCCcccccCCC--CCCCCCCCCCCccc
Q 012426 145 GAVARVRNALAYATHKFF--QENGFIWISSPIITASD-C--EGAGEQFCVTTLIPSSREAAESP--VDAIPKTKDGLIDW 217 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff--~~~gF~EV~TP~L~~~~-~--eg~~~~F~vt~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 217 (464)
..-.++|..|.+.+|+.| .+.|+.||.||+|++.. + .|.-+.|.-.-......+.-..| .+....+..+.
T Consensus 36 P~G~~l~~~i~~~wr~~~v~~~~~~~ev~tp~i~~~~lw~~SGH~~~f~d~m~~~~~~~~~~~~~~~~~~~~~~~~~--- 112 (331)
T d1b76a2 36 PLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVDNAKARYWTPPRYFNMMFQDLRGP--- 112 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEEHHHHHHTSHHHHCEEEECBSSSCBCCCCCEEEECCEEEECSS---
T ss_pred CcHHHHHHHHHHHHHHHHHhccCCeEEEeccccCChHHhccCccccccCCceeeecccccccCccchhhcccccccc---
Confidence 445789999999999987 46799999999999854 2 22222221000000000000000 00000000000
Q ss_pred cccccCcccccc--cchhHHHHH---Hhhc---c-CceEEEccccccCCCCCccc---cccchhccceeccCCHHHHHHH
Q 012426 218 SQDFFEKPAFLT--VSGQLNAET---YATA---L-SNVYTFGPTFRAENSNTSRH---LAEFWMIEPELAFADLKDDMAC 285 (464)
Q Consensus 218 ~~~~f~~~~yL~--~Spql~lql---l~~g---~-~rVfeI~~~FR~E~~~t~rH---l~EFtmlE~e~a~~~~~dlm~~ 285 (464)
...-+.+.||. .++..+... .... + =+++|||.|||+|.+ .... .=||||-|+|. |.+-++..+.
T Consensus 113 -~~~~~~~~~lr~~t~~~~~~~~~~~~~~syk~LP~~~aqig~~fR~E~s-~~~gl~RvReFtq~D~~~-F~~~~q~~~~ 189 (331)
T d1b76a2 113 -RGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEIT-PRNFIFRVREFEQMEIEY-FVRPGEDEYW 189 (331)
T ss_dssp -SCCGGGEEEECSCTHHHHHTTHHHHHHHHTCCSSEEEEEEEEEECCCSS-CCTTTTSCSEEEEEEEEE-EECGGGHHHH
T ss_pred -ccccCCcccccCcchhhHHHHHHhHHhccccccchhhhhccceeccccc-ccccccccchhhhhhhhh-hcCCcchhHH
Confidence 00112344554 233333322 1112 3 379999999999976 3322 24999999998 6777777777
Q ss_pred HHHHHHHHHHHHh
Q 012426 286 ATAYLQYVVRYIL 298 (464)
Q Consensus 286 ~e~li~~i~~~~~ 298 (464)
....+..+.+.+.
T Consensus 190 ~~~~~~~~~~~~~ 202 (331)
T d1b76a2 190 HRYWVEERLKWWQ 202 (331)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7666666655544
|
| >d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.16 E-value=0.00089 Score=63.77 Aligned_cols=106 Identities=18% Similarity=0.296 Sum_probs=66.6
Q ss_pred cchhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC--C--C------CCCCceeeecCCCcccccCCCCCCCCCCCC
Q 012426 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC--E--G------AGEQFCVTTLIPSSREAAESPVDAIPKTKD 212 (464)
Q Consensus 143 ~~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~--e--g------~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~ 212 (464)
.+..-.+.|..+...+++.|..+||.+|.||++...+. . | ...+|...+
T Consensus 11 ~~p~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~~~d--------------------- 69 (324)
T d1h4vb2 11 LFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQD--------------------- 69 (324)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCC------CCSCEEEC---------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCeEeeCCccccHHHhhcccCCchhHHHHHHhhhhc---------------------
Confidence 34556788999999999999999999999999976431 1 1 122332221
Q ss_pred CCccccccccCcccccccc--hhHHHHHHhhc---c---CceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 213 GLIDWSQDFFEKPAFLTVS--GQLNAETYATA---L---SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 213 ~~~~~~~~~f~~~~yL~~S--pql~lqll~~g---~---~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
--++..-|+.- ++....+.... . -|.|.+|+|||.+... .-..-||+|+.+|.-+.+
T Consensus 70 --------~~g~~l~LRpD~T~~iar~~~~~~~~~~~~p~r~~Y~g~VfR~~~~~-~gr~re~~Q~g~EiiG~~ 134 (324)
T d1h4vb2 70 --------RGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQ-KGRYRQFHQVNYEALGSE 134 (324)
T ss_dssp --------TTSCEEEECCCSHHHHHHHHHHTTGGGSSSSEEEEEEEEEECCCCC-----CCEEEEEEEEEESCC
T ss_pred --------cCCcccccccccccHHHHHHHHhhhhhhchhhhheeeCcccccCccc-CCCcceeccccccccCCC
Confidence 11333333311 12222222222 2 3999999999999875 344569999999987764
|
| >d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Escherichia coli [TaxId: 562]
Probab=97.10 E-value=0.00092 Score=63.52 Aligned_cols=104 Identities=15% Similarity=0.176 Sum_probs=67.1
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC------CCC----CCCceeeecCCCcccccCCCCCCCCCCCCC
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGA----GEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~------eg~----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (464)
...-.+.|..|...+++.|..+||.+|.||++...+. +.. ...+...
T Consensus 12 lp~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~~~~~~----------------------- 68 (322)
T d1kmma2 12 LPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFE----------------------- 68 (322)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCTTSHHHHHTCEEEE-----------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCeEeECcccccHHHhhcccCcchhhhHHHHhhhh-----------------------
Confidence 4455778899999999999999999999999976431 110 1122111
Q ss_pred CccccccccCcccccccc--hhHHHHHHhhc------cCceEEEccccccCCCCCccccccchhccceeccCC
Q 012426 214 LIDWSQDFFEKPAFLTVS--GQLNAETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (464)
Q Consensus 214 ~~~~~~~~f~~~~yL~~S--pql~lqll~~g------~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~ 278 (464)
+.-++..-|+.- ++.. +.++.. --|.|++|+|||.+.....|. -||+|+.+|.-..+
T Consensus 69 ------d~~g~~l~Lr~D~T~~ia-R~~~~~~~~~~~p~r~~y~g~v~r~~~~~~gr~-re~~Q~g~EiiG~~ 133 (322)
T d1kmma2 69 ------DRNGDSLTLRPEGTAGCV-RAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRY-RQFHQLGCEVFGLQ 133 (322)
T ss_dssp ------CTTSCEEEECSCSHHHHH-HHHHHTTCSTTCCEEEEEEEEEECCCCCBTTBC-SEEEEEEEEEESCC
T ss_pred ------hcccccccccccccchhh-HHHHhhhhhhhhhhhHhhcccccccCCCCCCcc-chhhhhhHHHhccc
Confidence 111333333321 1111 333221 247899999999998854444 69999999987764
|
| >d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]
Probab=97.08 E-value=0.00054 Score=63.54 Aligned_cols=120 Identities=15% Similarity=0.130 Sum_probs=75.8
Q ss_pred chhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecC--CC-------CCCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 012426 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD--CE-------GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (464)
Q Consensus 144 ~~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~--~e-------g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (464)
...-.+++.+|.+.+++.+ ++||.||.||.|.+.. .+ -..++|.++....
T Consensus 29 lP~G~~i~~~i~~~~~~~~-~~G~~ev~~P~l~~~~~l~~~sgh~~~~~~e~f~~~~~~~-------------------- 87 (265)
T d1nj1a3 29 MPHGFMIRKNTLKILRRIL-DRDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGL-------------------- 87 (265)
T ss_dssp CHHHHHHHHHHHHHHHHHH-TTTCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETT--------------------
T ss_pred cccHHHHHHHHHHHHHHHH-HhcCceehhhhhhhhhhhhhcccccccccccceeeeccCc--------------------
Confidence 4455788999999999876 5699999999886542 11 1245676542211
Q ss_pred ccccccccCcccccccchhHHH-HHHhhc------c-CceEEEccccccCCCCCcc---ccccchhc-cceeccCCHHHH
Q 012426 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSR---HLAEFWMI-EPELAFADLKDD 282 (464)
Q Consensus 215 ~~~~~~~f~~~~yL~~Spql~l-qll~~g------~-~rVfeI~~~FR~E~~~t~r---Hl~EFtml-E~e~a~~~~~dl 282 (464)
+=-+.+++|+...+-+. .++... + -|+||+|+|||+|... .+ =.-||+++ +.+....+-++.
T Consensus 88 -----~~~~~~~~L~pt~~~~~~~~~~~~~~SyrdLPlr~~q~~~~fR~E~~~-~~Gl~R~reF~~~~d~~~~~~~~~~~ 161 (265)
T d1nj1a3 88 -----SKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKH-TRPLIRVREITTFKEAHTIHATASEA 161 (265)
T ss_dssp -----EEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSC-CBTTTBCSEEEEEEEEEEEESSHHHH
T ss_pred -----cccceeEEeecccccceEEeeeeeeccccccceEEEeeccceeeeccc-CcCCEEEEEEEEeccceeecCCHHHH
Confidence 00134567887777766 554432 3 4899999999999442 11 23499765 555555666666
Q ss_pred HHHHHHHH
Q 012426 283 MACATAYL 290 (464)
Q Consensus 283 m~~~e~li 290 (464)
....+.++
T Consensus 162 ~~e~~~~~ 169 (265)
T d1nj1a3 162 EEQVERAV 169 (265)
T ss_dssp HHHHHHHH
T ss_pred HHHhhhhH
Confidence 55554444
|
| >d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 32 KDa subunit (RPA32) fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.50 E-value=0.015 Score=47.46 Aligned_cols=78 Identities=14% Similarity=0.199 Sum_probs=55.9
Q ss_pred CEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccc-hhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEee
Q 012426 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (464)
Q Consensus 30 ~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~-~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~ 108 (464)
..|++.|+|.++....+.+-..|.|+|| ..|.|....+... ..+... +..|+.|.|.|.++.-.. ...|.+.+
T Consensus 29 ~~V~iVG~V~~i~~~~t~~~y~idDgTG-~~i~v~~w~~~~~~~~~~~~--i~~g~yVrV~G~lk~f~~---~~~i~~~~ 102 (128)
T d2pi2a1 29 SQVTIVGIIRHAEKAPTNIVYKIDDMTA-APMDVRQWVDTDDTSSENTV--VPPETYVKVAGHLRSFQN---KKSLVAFK 102 (128)
T ss_dssp SEEEEEEEEEEEEECSSEEEEEEECSSS-SCEEEEEECC-------CCC--CCTTCEEEEEEEEEEETT---EEEEEEEE
T ss_pred EEEEEEEEEEEEEecCCEEEEEEECCCC-CcEEEEEECCCCCCcccccc--ccCCCEEEEEEEEEeeCC---eEEEEEEE
Confidence 5799999999999987777779999998 2488877654321 112234 999999999999986542 35677777
Q ss_pred EEEEe
Q 012426 109 IVLVG 113 (464)
Q Consensus 109 i~vls 113 (464)
+..+.
T Consensus 103 i~~v~ 107 (128)
T d2pi2a1 103 IMPLE 107 (128)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 66554
|
| >d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Seryl-tRNA synthetase (SerRS) species: Thermus thermophilus, strain hb27 [TaxId: 274]
Probab=96.34 E-value=0.006 Score=57.67 Aligned_cols=122 Identities=20% Similarity=0.312 Sum_probs=78.9
Q ss_pred hhhhhHHHHHHHHHHHHhhhCCcEEEeCceEeecCC-CCCCC--CceeeecCCCcccccCCCCCCCCCCCCCCccccccc
Q 012426 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAGE--QFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (464)
Q Consensus 145 ~~~~~~rs~i~~~~r~ff~~~gF~EV~TP~L~~~~~-eg~~~--~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (464)
....++..++++.+.+++.++||+||.+|.|..... +|.+. -|.- .. + ..
T Consensus 53 g~~a~Le~AL~~~~ld~~~~~gy~~v~~P~lv~~~~~~~~G~~p~f~~-~~------------------------y--~~ 105 (311)
T d1seta2 53 GDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRD-QV------------------------W--AI 105 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGG-GS------------------------C--BB
T ss_pred CHHHHHHHHHHHHHHHhhhcccceEEeechhhccchhhhccccccccc-cc------------------------c--cc
Confidence 456778888999999999999999999999998542 22221 1210 00 0 01
Q ss_pred cCcccccccchhHHHH-HHhh------cc-CceEEEccccccCCCC------Cccccccchhccceecc-CCHHHHHHHH
Q 012426 222 FEKPAFLTVSGQLNAE-TYAT------AL-SNVYTFGPTFRAENSN------TSRHLAEFWMIEPELAF-ADLKDDMACA 286 (464)
Q Consensus 222 f~~~~yL~~Spql~lq-ll~~------g~-~rVfeI~~~FR~E~~~------t~rHl~EFtmlE~e~a~-~~~~dlm~~~ 286 (464)
-+.+.||.-..|..+= +... .+ -|+++.+||||.|... +--...+|+.+|....- .+.++..+..
T Consensus 106 ~~~~~~LipTsE~~l~~~~~~~i~~~~~LPlr~~~~s~cfR~Eag~~g~~trGL~RvhQF~kvE~~~~~~~~~e~s~~~~ 185 (311)
T d1seta2 106 AETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAF 185 (311)
T ss_dssp TTSSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHH
T ss_pred cccceeecccccchhhhhhhhhhhhhhhccceEEeecccchhhhccccccchhhhhhcccchhhhheeeccccccchhHH
Confidence 1345678766666653 3222 12 3799999999999642 12245699999987543 3567777776
Q ss_pred HHHHHHH
Q 012426 287 TAYLQYV 293 (464)
Q Consensus 287 e~li~~i 293 (464)
++++...
T Consensus 186 ~~~~~~~ 192 (311)
T d1seta2 186 QELLENA 192 (311)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
|
| >d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Hypothetical protein YgiW family: Hypothetical protein YgiW domain: Hypothetical protein YgiW species: Escherichia coli [TaxId: 562]
Probab=95.95 E-value=0.016 Score=45.64 Aligned_cols=82 Identities=18% Similarity=0.174 Sum_probs=58.8
Q ss_pred eecccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEE
Q 012426 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (464)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~ 91 (464)
.++++.+.. ..+..|+|.|.|.+.-..-+.. ++|++| .|+|-++.+. +....+++++-|.+.|+
T Consensus 25 ~tV~~a~~~------~Ddt~V~L~G~Iv~~l~~d~Y~---F~D~TG--~I~VeId~~~-----w~g~~v~p~~kV~i~Ge 88 (106)
T d1nnxa_ 25 TTVESAKSL------RDDTWVTLRGNIVERISDDLYV---FKDASG--TINVDIDHKR-----WNGVTVTPKDTVEIQGE 88 (106)
T ss_dssp CCHHHHTTS------CSSEEEEEEEEEEEEEETTEEE---EEETTE--EEEEECCGGG-----STTCCCCTTSCEEEEEE
T ss_pred EhHHHHhhC------cCCCeEEEEEEEEEEeCCceEE---EECCCC--cEEEEEChhh-----cCCcccCCCCEEEEEEE
Confidence 355555543 4578899999997766554444 599997 4999887542 22113999999999999
Q ss_pred EEeCCCCCceEEEEEeeEEEE
Q 012426 92 VVPSQGSKQKVELKVNKIVLV 112 (464)
Q Consensus 92 v~~~~~~~~~~el~~~~i~vl 112 (464)
+-+.- ...||.|..|++|
T Consensus 89 vDk~~---~~~eIdV~~I~~l 106 (106)
T d1nnxa_ 89 VDKDW---NSVEIDVKQIRKV 106 (106)
T ss_dssp EEEET---TEEEEEEEEEEEC
T ss_pred EcCCC---CceEEEEEEEEEC
Confidence 98764 2379999988875
|
| >d12asa_ d.104.1.1 (A:) Asparagine synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Asparagine synthetase species: Escherichia coli [TaxId: 562]
Probab=95.90 E-value=0.11 Score=47.86 Aligned_cols=263 Identities=14% Similarity=0.107 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHhhh-----CCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc-cccCc
Q 012426 151 RNALAYATHKFFQE-----NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ-DFFEK 224 (464)
Q Consensus 151 rs~i~~~~r~ff~~-----~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~f~~ 224 (464)
..+.+..++++|.. .+.+.|..|+++...++-+.++=-+.. || .++. +.-+.
T Consensus 5 tq~aI~~iK~~F~~~L~~~LnL~rVsAPLfv~~~sGlNDnLnG~Er-----------pV-----------~F~ik~~~~~ 62 (327)
T d12asa_ 5 KQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEK-----------AV-----------QVKVKALPDA 62 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCC-----------CC-----------EECCSSSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCcEEecCCeEEcCCCCcccCCCCeee-----------ee-----------EEecCCCCCC
Confidence 44556677777755 599999999999876543332100000 00 0000 11133
Q ss_pred ccccccchhHHHHHHhh--cc---CceEEEcccccc-CCCCCccccccchhccceeccCCHHHHHHHHHHHHHHHHHHHh
Q 012426 225 PAFLTVSGQLNAETYAT--AL---SNVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYIL 298 (464)
Q Consensus 225 ~~yL~~Spql~lqll~~--g~---~rVfeI~~~FR~-E~~~t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i~~~~~ 298 (464)
.+-.-+|=--|+|+... || +.+|+=..+.|. |+.-+..|.-=.-|-|||.....-+.-++.+.+.++.+...+.
T Consensus 63 ~~EiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~DEd~ldn~HSiyVDQWDWEkvI~~~dR~l~~Lk~tV~~Iy~~ik 142 (327)
T d12asa_ 63 QFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIK 142 (327)
T ss_dssp CEEECSCCTTHHHHHHHHTTCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHHHHHHHH
T ss_pred eeEEEeehHHHHHHHHHhcCCCCCceeccCCccccCCcccCCCceeEEEcccchhhhcCccccCHHHHHHHHHHHHHHHH
Confidence 34455677778886443 55 469999999887 5533589999999999999886444445555555555555443
Q ss_pred hcCcccccccccccccchHHHHhhhhCCCCCCCCHHHHHHHHHhcCCCcccCCCccccccHHHHHHhhhhcccCCCeeee
Q 012426 299 DNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVS 378 (464)
Q Consensus 299 ~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fI~ 378 (464)
..- ..+ ...+ + +...+..++.-||-+|..+++ | .. =.++-|..++..+ ..|||+
T Consensus 143 ~te-~~v--~~~y-~------~~~~Lp~~I~FitsqeL~~~Y---------P-~L---t~keRE~~i~ke~---gAVFi~ 196 (327)
T d12asa_ 143 ATE-AAV--SEEF-G------LAPFLPDQIHFVHSQELLSRY---------P-DL---DAKGRERAIAKDL---GAVFLV 196 (327)
T ss_dssp HHH-HHH--HHHS-C------CCCCSCSSCEEEEHHHHHHHS---------S-SS---CHHHHHHHHHHHH---SEEEEE
T ss_pred HHH-HHH--HHhC-C------cccCCCCceEEEehHHHHHHC---------C-CC---ChHHHHHHHHHHh---CcEEEE
Confidence 210 000 0000 0 000111111123444443321 1 11 1335566666654 477777
Q ss_pred eCCCCC--------cc-ccc---ccCCCCCceeeEEEeeC------CccccccCccccccHHHHHHHHHHcCCC-ccchH
Q 012426 379 DYPKEI--------KA-FYM---RQNDDGRTVAAMDMLVP------RIGELIGGSQREERLEYLEGRLDELKLN-RDSYW 439 (464)
Q Consensus 379 ~yP~~~--------~p-fy~---~~~~d~~~~~~fdl~~~------GigEi~~G~~r~~d~~~l~~r~~~~g~~-~~~~~ 439 (464)
.-=..+ ++ =|. ....++....+=|+++- .+ ||.+-+.|-.. +.|.++++..|-. ...+.
T Consensus 197 ~IG~~L~~G~~Hd~RApDYDDW~t~~~~~~~gLNGDIlvw~~vl~~a~-ElSSMGIRVd~-~~L~~QL~~~~~~~r~~l~ 274 (327)
T d12asa_ 197 GIGGKLSDGHRHDVRAPDYDDWSTPSELGHAGLNGDILVWNPVLEDAF-ELSSMGIRVDA-DTLKHQLALTGDEDRLELE 274 (327)
T ss_dssp CCSSCCSSSCCSSCCCTTTBCCSSBCTTSSBCSEEEEEEEETTTTEEE-EEEEEEEBCCH-HHHHHHHHHHTCTTGGGSH
T ss_pred ecCCcCCCCCcCCCCCCCCCcccCcccccccCccceEEEechhcCcee-eeecceeEECH-HHHHHHHHHcCChhhhcCH
Confidence 533222 21 110 00011112256666653 56 88888888765 8899999877654 33445
Q ss_pred HHHHHhhh------h--hh---HhhhhcCCCCCCC
Q 012426 440 WYLDLRHY------G--SG---LVFILIKVTNFLN 463 (464)
Q Consensus 440 ~yl~~~~~------G--~g---L~mll~~~~~I~~ 463 (464)
|-=.++.- | .| |+|+|++...|-+
T Consensus 275 ~Hk~ll~~~LP~TIGGGIGQSRlcM~lL~KaHIGE 309 (327)
T d12asa_ 275 WHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQ 309 (327)
T ss_dssp HHHHHHTTCSCCEEEEEEEHHHHHHHHHTCSCGGG
T ss_pred HHHHHHcCCCCccccccccHHHHHHHHHccCcccc
Confidence 54333331 2 23 9999999998865
|
| >d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Archaeal ssDNA-binding protein species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.93 E-value=0.063 Score=42.65 Aligned_cols=84 Identities=15% Similarity=0.140 Sum_probs=58.3
Q ss_pred ecccccCCCCCCCCCCCCEEEEEEEEeee---ec------CCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCC
Q 012426 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (464)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~GwV~~i---R~------~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g 83 (464)
+|++|... ...|+|.|+|.++ |. .|++..+.|.|.+| +|.+++-.+. +.. |..|
T Consensus 4 kI~dL~pg--------~~~v~i~~~V~~~~~~r~~~~~~g~~~v~~~~i~DeTG--~i~~~~W~~~-----~~~--l~~G 66 (115)
T d1o7ia_ 4 KVGNLKPN--------MESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETG--RVKLTLWGKH-----AGS--IKEG 66 (115)
T ss_dssp CGGGCCTT--------CSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTE--EEEEEEEGGG-----TTC--CCTT
T ss_pred cHHHCCCC--------CCCEEEEEEEEECCCCceeecCCCCEEEEEEEEEcCCC--eEEEEEeccc-----ccc--CCCC
Confidence 56666653 2458999999886 33 24788899999997 4998887531 345 9999
Q ss_pred cEEEEEEEEEeCCCCCceEEEEEeeEEEEecC
Q 012426 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (464)
Q Consensus 84 ~~V~V~G~v~~~~~~~~~~el~~~~i~vls~~ 115 (464)
|+|.++|--++.-. +.++|.+.+-..+.++
T Consensus 67 dvv~i~na~v~~~~--g~~el~~~~~s~i~~~ 96 (115)
T d1o7ia_ 67 QVVKIENAWTTAFK--GQVQLNAGSKTKIAEA 96 (115)
T ss_dssp CEEEEEEEEEEEET--TEEEEEECTTCEEEEC
T ss_pred CEEEEeeEEEEEEC--CeEEEEECCCeEEEEC
Confidence 99999865544432 4589999764444443
|
| >d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Thermotoga maritima [TaxId: 2336]
Probab=94.44 E-value=0.036 Score=50.97 Aligned_cols=97 Identities=11% Similarity=0.066 Sum_probs=56.1
Q ss_pred HHHHhhhCCcEEEeCceEeecCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhHHH-
Q 012426 158 THKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNA- 236 (464)
Q Consensus 158 ~r~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~~Spql~l- 236 (464)
+++-..++||.||.||++....... ...| . +.+ |+.+-|+ |++=.
T Consensus 12 f~~~~~~~Gy~~i~tP~~E~~e~~~-~~~F-~-D~~-----------------------------g~~l~LR--pD~T~~ 57 (275)
T d1usya_ 12 FYSKATKKGFSPFFVPALEKAEEPA-GNFF-L-DRK-----------------------------GNLFSIR--EDFTKT 57 (275)
T ss_dssp HHHHHHHTTCEECCCCSEEECSSCC-SSCE-E-ETT-----------------------------SCEEEEC--CCHHHH
T ss_pred HHHHHHHcCCceeecCccccccccc-ccee-E-cCC-----------------------------CCEEEEC--CCCcHH
Confidence 3444567999999999999866432 2234 1 111 2222222 22222
Q ss_pred --HHHhh-cc---CceEEEccccccCCCCCccccccchhccceeccCC-H---HHHHHHHHHHHHH
Q 012426 237 --ETYAT-AL---SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L---KDDMACATAYLQY 292 (464)
Q Consensus 237 --qll~~-g~---~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~~-~---~dlm~~~e~li~~ 292 (464)
|+++. .. -|+|.+|+|||.++. +.-||+|+.+|.-+.+ . -+++.++-++++.
T Consensus 58 iaR~~~~~~~~~p~k~~Y~g~VfR~~~~----~~re~~Q~G~EiiG~~~~~aD~Evi~l~~~~l~~ 119 (275)
T d1usya_ 58 VLNHRKRYSPDSQIKVWYADFVYRYSGS----DLVAEYQLGLEKVPRNSLDDSLEVLEIIVESASE 119 (275)
T ss_dssp HHHHHTTCTTCCCEEEECCEEEEEEETT----EEEEEEEEEEEEESCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCeeeeEEeeEEEeCCC----cccceeecCceeechhhHHHHHHHHHHHHHHHHh
Confidence 23332 22 389999999998764 2459999999986653 2 3344444444433
|
| >d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 70 KDa subunit (RPA70) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.89 E-value=0.11 Score=41.25 Aligned_cols=91 Identities=12% Similarity=0.129 Sum_probs=61.4
Q ss_pred eecccccCCCCCCCCCCCCEEEEEEEEeee---e---c---CCCeEEEEEEeCcCCcceEEEEeCCcc-chhhhhcCCCC
Q 012426 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---R---A---QSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLIT 81 (464)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~i---R---~---~g~~~Fi~LrD~sg~~~iQvv~~~~~~-~~~~~~~~~l~ 81 (464)
+.|++|... ...++|.|||.++ | . .|++.-++|.|.+| .|++++..+.. .| -.. |.
T Consensus 3 ~PI~~L~p~--------~~~~~I~~RV~~k~~~r~f~~~~~~g~v~~~~l~De~G--~I~~t~~~~~~~~f--~~~--l~ 68 (116)
T d1jmca1 3 VPIASLTPY--------QSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG--EIRATAFNEQVDKF--FPL--IE 68 (116)
T ss_dssp CCGGGCCTT--------CCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEEHHHHHHH--GGG--CC
T ss_pred EeHHHcCCC--------CCCEEEEEEEEEeccceEEECCCCCceEEEEEEEcCCC--CEEEEEchhhhhhh--Hhh--cc
Confidence 356666653 3458899999654 2 2 25778889999998 49999985431 12 134 99
Q ss_pred CCcEEEEEE-EEEeCCC----CCceEEEEEeeEEEEecCC
Q 012426 82 TGASIWIQG-NVVPSQG----SKQKVELKVNKIVLVGKSD 116 (464)
Q Consensus 82 ~g~~V~V~G-~v~~~~~----~~~~~el~~~~i~vls~~~ 116 (464)
.|++..+.| .|+.... ....+||....-+.+.++.
T Consensus 69 ~G~vy~i~~~~V~~~~~~y~~~~~~yei~f~~~T~I~~~~ 108 (116)
T d1jmca1 69 VNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCE 108 (116)
T ss_dssp TTCEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEECC
T ss_pred cCCEEEEcceEEEEccCcEeccCCcEEEEECCCcEEEECC
Confidence 999999977 4544322 2345899888777776664
|
| >d2pi2e1 b.40.4.3 (E:3-117) Replication protein A 14 KDa (RPA14) subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 14 KDa (RPA14) subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.78 E-value=0.18 Score=39.97 Aligned_cols=70 Identities=11% Similarity=0.145 Sum_probs=50.6
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEE
Q 012426 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (464)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~ 106 (464)
..|+.|++-|+|.+++..|+.. .+++..+ ..++|.+.+.. . ...+.+|.|.|+|.. +..|.+
T Consensus 18 ~~Gk~V~ivGkV~~v~~~g~~~--~~~s~D~-~~V~v~l~~~~-------~--~~~~~~vEViG~V~~------~~sI~~ 79 (115)
T d2pi2e1 18 FIDKPVCFVGRLEKIHPTGKMF--ILSDGEG-KNGTIELMEPL-------D--EEISGIVEVVGRVTA------KATILC 79 (115)
T ss_dssp STTCEEEEEEEEEEECTTSSEE--EEECTTS-CEEEEECSSCC-------S--SCCCSEEEEEEEECT------TSCEEE
T ss_pred hCCCeEEEEEEEEEEcCCCCEE--EEEcCCC-CEEEEEeCCCC-------C--CccCCeEEEEEEECC------CCcEEE
Confidence 7899999999999999887544 3666554 25777666542 2 678889999999932 246777
Q ss_pred eeEEEEec
Q 012426 107 NKIVLVGK 114 (464)
Q Consensus 107 ~~i~vls~ 114 (464)
..+.-++.
T Consensus 80 ~~~~~fg~ 87 (115)
T d2pi2e1 80 TSYVQFKE 87 (115)
T ss_dssp EEEEECCC
T ss_pred EEEEEcCC
Confidence 77766654
|
| >d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: RecG "wedge" domain domain: RecG "wedge" domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.27 E-value=0.4 Score=40.55 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=43.6
Q ss_pred CCCCEEEEEEEEeeeec--C--CCeEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCC
Q 012426 27 RVGLMIVVAGWVRTLRA--Q--SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (464)
Q Consensus 27 ~~~~~V~v~GwV~~iR~--~--g~~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~ 96 (464)
..|+.|+|.|.|.+.+. . .++.-+.+.|++|. |.+++=...-....++ ...|+.|.|.|++....
T Consensus 58 ~~g~~vti~g~V~~~~~~~~~~~~~~~~~v~D~~g~--i~l~fFn~~~~~~~~k---~~~G~~v~v~Gkvk~~~ 126 (180)
T d1gm5a2 58 LPGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLVH--VPLKWFNQDYLQTYLK---QLTGKEVFVTGTVKSNA 126 (180)
T ss_dssp CSSCCCEEEECCCCCEEEECSSCEEEEEEECCSSCC--EEEEECSCCTTHHHHH---TTCSSCEEEEEEECSCC
T ss_pred CcceeeeeeeEEEeeccccccccceeEEEEEeccce--EEEEEeCcHHHHHHHh---hhcCceEEEEEEEeecc
Confidence 45788999999986543 2 24556779999874 8887543321111122 45799999999997654
|
| >d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=85.76 E-value=0.27 Score=47.15 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=31.9
Q ss_pred ceEEEccccccCCCCCcc----ccccchhccceeccCCHHHHHHHHHHHHHHH
Q 012426 245 NVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFADLKDDMACATAYLQYV 293 (464)
Q Consensus 245 rVfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~a~~~~~dlm~~~e~li~~i 293 (464)
-+.|||++||||=+ +| -+-||+|+|+|. |.+-.+-....+-.+...
T Consensus 211 GiAQIGk~FRNEIs--Pr~~l~R~REF~q~EiE~-Fv~P~~~~~~~~yw~~~~ 260 (394)
T d1atia2 211 GIAQIGKAFRNEIT--PRNFIFRVREFEQMEIEY-FVRPGEDEYWHRYWVEER 260 (394)
T ss_dssp EEEEEEEEEBCCSS--CCTGGGSCSEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred eeeeeccccccccC--cccCCcccccceeeeeEE-EEeCCcchHHHHHHHHHH
Confidence 48999999999954 44 356999999998 666555444444444433
|
| >d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain species: Thermus thermophilus [TaxId: 274]
Probab=85.23 E-value=1.1 Score=38.63 Aligned_cols=109 Identities=11% Similarity=0.054 Sum_probs=62.3
Q ss_pred HHHHHHHHhhhCCcEEEeCceEeecCC----CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccc
Q 012426 154 LAYATHKFFQENGFIWISSPIITASDC----EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT 229 (464)
Q Consensus 154 i~~~~r~ff~~~gF~EV~TP~L~~~~~----eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~yL~ 229 (464)
..+.+|++|...||.||-|-.+++... ....+. +.-.||- + ..--+|+
T Consensus 20 ~~~~ir~~L~~~Gf~Ev~tysf~s~~~~~~~~~~~~~--i~l~NPi----------------------s----~e~~~lR 71 (207)
T d1jjcb5 20 KEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPR--LLLLNPL----------------------A----PEKAALR 71 (207)
T ss_dssp HHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCS--CEESSCS----------------------S----GGGSEEC
T ss_pred HHHHHHHHHHHCCcchhcCCCcCCHHHHHhhcCCCCc--EEEeCCc----------------------c----hhhhhhh
Confidence 456789999999999999999987432 111122 2223330 1 1122577
Q ss_pred cchhHHH-HHHh----hcc---CceEEEccccccCCCC------CccccccchhccceeccCCHHHHHHHHHHHHHHH
Q 012426 230 VSGQLNA-ETYA----TAL---SNVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLKDDMACATAYLQYV 293 (464)
Q Consensus 230 ~Spql~l-qll~----~g~---~rVfeI~~~FR~E~~~------t~rHl~EFtmlE~e~a~~~~~dlm~~~e~li~~i 293 (464)
+|-=--| +.+. .+. -|+||||++|+..+.. +..+.++.|+-. .-.|+.++...++.++..+
T Consensus 72 ~sLlpgLL~~~~~N~~r~~~~~~~lFEiG~vf~~~~~~~~~~~~~g~~~~~~~~~~---~~~df~~~Kg~v~~ll~~l 146 (207)
T d1jjcb5 72 THLFPGLVRVLKENLDLDRPERALLFEVGRVFREREETHLAGLLFGEGVGLPWAKE---RLSGYFLLKGYLEALFARL 146 (207)
T ss_dssp SCSHHHHHHHHHHHHHHSCCSEEEEEEEEEEESSSEEEEEEEEEEESCBSCTTSSC---CBCHHHHHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHhCcccccccceeeEeeeeeeeccccccchhhhhhcccccccccc---cchhHHHHHHHHHHHHHhh
Confidence 6654444 4332 343 3689999999875431 122333333221 1136778877777776553
|
| >d1wjja_ b.40.4.3 (A:) Hypothetical protein At4g28440 (F20O9.120) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Hypothetical protein At4g28440 (F20O9.120) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.37 E-value=3.1 Score=33.68 Aligned_cols=80 Identities=16% Similarity=0.153 Sum_probs=57.6
Q ss_pred eecccccCCCCCCCCCCCCEEEEEEEEeeee-------c------------CCCeEEEEEEeCcCCcceEEEEeCCccch
Q 012426 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR-------A------------QSSVTFIEVNDGSCLSNMQCVMTSDAEGY 72 (464)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~iR-------~------------~g~~~Fi~LrD~sg~~~iQvv~~~~~~~~ 72 (464)
.+|++|... ...|.|.++|.++- . .++++-+.+.|.+|. |.+.+..+.
T Consensus 17 ~kI~dL~pg--------~~~vnl~vkVl~~~~~~~~~r~~~~~~~~~~~g~~~~v~~~~v~DeTG~--i~~tlW~~~--- 83 (145)
T d1wjja_ 17 VKVEQLKPG--------TTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGC--ILFTARNDQ--- 83 (145)
T ss_dssp CCSTTCCTT--------CCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCE--EEEEECTTH---
T ss_pred eEHHHCCCC--------CCCceEEEEEEEcccceeecccccccccccccCCCcEEEEEEEEccCCe--EEEEEEecc---
Confidence 577777763 35689999998752 1 125888899999974 888877542
Q ss_pred hhhhcCCCCCCcEEEEEEEEEeCCCCCceEEEEEeeEE
Q 012426 73 DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (464)
Q Consensus 73 ~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~el~~~~i~ 110 (464)
... |..||+|.+.+-...--. +.++|.+.+..
T Consensus 84 --~~~--l~~Gd~v~i~na~v~~~~--G~~~L~vg~~g 115 (145)
T d1wjja_ 84 --VDL--MKPGATVILRNSRIDMFK--GTMRLGVDKWG 115 (145)
T ss_dssp --HHH--TCTTCEEEEEEEEEEEET--TEEEEEECTTC
T ss_pred --ccc--cCcCCEEEEeeEEEEEEC--CEEEEEECCCE
Confidence 234 999999999987766543 34899997543
|
| >d1sr3a_ b.40.9.1 (A:) Heme chaperone CcmE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Heme chaperone CcmE family: Heme chaperone CcmE domain: Heme chaperone CcmE species: Escherichia coli [TaxId: 562]
Probab=80.01 E-value=7.3 Score=30.07 Aligned_cols=76 Identities=20% Similarity=0.329 Sum_probs=52.2
Q ss_pred CCCCEEEEEEEEe--ee-ecCCC-eEEEEEEeCcCCcceEEEEeCCccchhhhhcCCCCCCcEEEEEEEEEeCCCCCceE
Q 012426 27 RVGLMIVVAGWVR--TL-RAQSS-VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (464)
Q Consensus 27 ~~~~~V~v~GwV~--~i-R~~g~-~~Fi~LrD~sg~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (464)
..|+.++|.|.|. |+ |..++ -+-+.|.|+.+ .|.|..+.-.++ +.+-|.-|.|+|++....
T Consensus 26 ~~g~~iRvgG~V~~gSi~~~~~~~~~~F~itD~~~--~i~V~Y~GilPd-------lF~eg~~VVveG~~~~~~------ 90 (114)
T d1sr3a_ 26 EVGQRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEG--SVDVSYEGILPD-------LFREGQGVVVQGELEKGN------ 90 (114)
T ss_dssp CTTSEEEEEEEECTTTCEECSSSSEEEEEEECSSC--EEEEEEESCCCT-------TCCTTSEEEEEEEECSSS------
T ss_pred cCCcEEEEeeEEEEeEEEeecCcceEEEEEccCCc--EEEEEecCCCCh-------hhcCCCeEEEEEEECCCC------
Confidence 4589999999995 45 44443 23344889874 699988854432 378899999999985321
Q ss_pred EEEEeeEEEEecCCCCC
Q 012426 103 ELKVNKIVLVGKSDPSY 119 (464)
Q Consensus 103 el~~~~i~vls~~~~~~ 119 (464)
.+.++ +||.||+..|
T Consensus 91 ~f~A~--~vlaKh~e~Y 105 (114)
T d1sr3a_ 91 HILAK--EVLAKHDENY 105 (114)
T ss_dssp EEEES--SCBCCSCCCC
T ss_pred EEEEE--EEEecCCCCC
Confidence 23444 6889997664
|