Citrus Sinensis ID: 012539
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 461 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FND7 | 612 | Putative pentatricopeptid | yes | no | 1.0 | 0.753 | 0.715 | 0.0 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.997 | 0.741 | 0.462 | 1e-128 | |
| Q9SZT8 | 632 | Pentatricopeptide repeat- | no | no | 1.0 | 0.729 | 0.473 | 1e-127 | |
| Q683I9 | 573 | Pentatricopeptide repeat- | no | no | 1.0 | 0.804 | 0.472 | 1e-126 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 1.0 | 0.624 | 0.453 | 1e-125 | |
| Q9FG16 | 622 | Pentatricopeptide repeat- | no | no | 1.0 | 0.741 | 0.476 | 1e-124 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.837 | 0.597 | 0.477 | 1e-122 | |
| O23337 | 722 | Pentatricopeptide repeat- | no | no | 0.997 | 0.637 | 0.463 | 1e-121 | |
| A8MQA3 | 595 | Pentatricopeptide repeat- | no | no | 0.952 | 0.737 | 0.463 | 1e-119 | |
| Q9LW32 | 659 | Pentatricopeptide repeat- | no | no | 0.952 | 0.666 | 0.475 | 1e-116 |
| >sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/461 (71%), Positives = 396/461 (85%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
+YAELGCL C KVF+ I PD VC+TAM++ACA+CGDV ARK+F+ MPERDPIAWNAM
Sbjct: 152 LYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAM 211
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
++GYAQ G+SREAL++FHLMQ+ VK+N V+M+SVLSACT LGALDQGRWAH YIERN++
Sbjct: 212 ISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKI 271
Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
K+TV L T LVD+Y+KCG+M KAM+ FWGM+E+NVYTW+S + GLAMNG GEK LELFSL
Sbjct: 272 KITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSL 331
Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
MKQ GV PN VTFVSVLRGC VVG V+EG+ HFDSMR E+GIEP LEHYGCLVDLY RAG
Sbjct: 332 MKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAG 391
Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
RL++A+ +I +MPMKPHA W +LL+A RMYKN E+G LAS+K++ELET NHGAYVLLSN
Sbjct: 392 RLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSN 451
Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
IYA+S +WD V +VRQ MK+KGV+K PGCSV+EV+ EVHEFF GD++HP+Y +I+ + +
Sbjct: 452 IYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKD 511
Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
ISRRL+LAGY A+T PVM+DI+EEEKED LC HSEK AIAFG++SLKE VPIRIVKNLRV
Sbjct: 512 ISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRV 571
Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
C DCH V+ MISK+FNREIIVRDRNRFHHFK+G CSC G+W
Sbjct: 572 CGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 459 bits (1180), Expect = e-128, Method: Compositional matrix adjust.
Identities = 213/461 (46%), Positives = 309/461 (67%), Gaps = 1/461 (0%)
Query: 2 YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
YA G +FD I EPD V ++I K G +D+A +F +M E++ I+W M+
Sbjct: 160 YAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMI 219
Query: 62 AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
+GY Q ++EAL LFH MQ DV+ + VS+ + LSAC LGAL+QG+W H Y+ + R++
Sbjct: 220 SGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIR 279
Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
M LG L+DMY+KCG M +A++ F +K+++V WT++I G A +G G +++ F M
Sbjct: 280 MDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEM 339
Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
++ G++PN +TF +VL C GLVEEG+ F SM R+Y ++P +EHYGC+VDL GRAG
Sbjct: 340 QKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGL 399
Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
LDEA I +MP+KP+A WGALL ACR++KN E+GE L+ ++ + G YV +NI
Sbjct: 400 LDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANI 459
Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
+A K WD+ R++MK +GV K+PGCS I ++ HEF AGD +HP +I+ +
Sbjct: 460 HAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIM 519
Query: 362 SRRLKLAGYVANTNPVMYD-IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
R+L+ GYV ++ D ++++E+E + +HSEK+AI +GLI K G IRI+KNLRV
Sbjct: 520 RRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRV 579
Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
C DCH VTK+ISK++ R+I++RDR RFHHF++GKCSC YW
Sbjct: 580 CKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 454 bits (1167), Expect = e-127, Method: Compositional matrix adjust.
Identities = 219/463 (47%), Positives = 314/463 (67%), Gaps = 2/463 (0%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
+YA+ G + QKVFD + E +V TAMI+ AK G+V+ AR +FD M ERD ++WN M
Sbjct: 170 VYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVM 229
Query: 61 LAGYAQCGKSREALHLFH-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
+ GYAQ G +AL LF L+ K +E+++V+ LSAC+ +GAL+ GRW HV+++ +R
Sbjct: 230 IDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSR 289
Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
+++ V + T L+DMYSKCG++ +A+ F +++ W ++I G AM+G + +L LF+
Sbjct: 290 IRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFN 349
Query: 180 LMKQ-AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
M+ G++P ++TF+ L+ C GLV EG F+SM +EYGI+P +EHYGCLV L GR
Sbjct: 350 EMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGR 409
Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
AG+L A + I M M + W ++L +C+++ + +G+ + L+ L KN G YVLL
Sbjct: 410 AGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLL 469
Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
SNIYA +++ V VR +MK KG+ K PG S IE++ +VHEF AGD H + EI ML
Sbjct: 470 SNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTML 529
Query: 359 GEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
+IS R+K GYV NTN V+ D+EE EKE +L HSE++AIA+GLIS K G P++I KNL
Sbjct: 530 RKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNL 589
Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
RVC DCH VTK+ISK+ R+I++RDRNRFHHF +G CSC +W
Sbjct: 590 RVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 452 bits (1164), Expect = e-126, Method: Compositional matrix adjust.
Identities = 221/468 (47%), Positives = 315/468 (67%), Gaps = 7/468 (1%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MY+ G L Q+VFD D+ ++++A AK G +D ARK+FDEMPER+ I+W+ +
Sbjct: 106 MYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCL 165
Query: 61 LAGYAQCGKSREALHLFHLMQIHD-----VKLNEVSMVSVLSACTHLGALDQGRWAHVYI 115
+ GY CGK +EAL LF MQ+ V+ NE +M +VLSAC LGAL+QG+W H YI
Sbjct: 166 INGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYI 225
Query: 116 ERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM-KERNVYTWTSVIGGLAMNGAGEKS 174
++ +++ + LGTAL+DMY+KCG++ +A F + +++V ++++I LAM G ++
Sbjct: 226 DKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDEC 285
Query: 175 LELFSLMKQA-GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV 233
+LFS M + + PN VTFV +L C GL+ EG+ +F M E+GI P ++HYGC+V
Sbjct: 286 FQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMV 345
Query: 234 DLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHG 293
DLYGR+G + EA I MPM+P WG+LL+ RM + + E A ++L+EL+ N G
Sbjct: 346 DLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSG 405
Query: 294 AYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNE 353
AYVLLSN+YA++ W V +R M+ KG+ K+PGCS +EV+ VHEF GDE+
Sbjct: 406 AYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESER 465
Query: 354 IEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIR 413
I ML EI +RL+ AGYV +T V+ D+ E++KE L HSEK+AIAF L+ + G P+R
Sbjct: 466 IYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVR 525
Query: 414 IVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
I+KNLR+C DCH V KMISK+F+REI+VRD NRFHHF++G CSC+ +W
Sbjct: 526 IIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 450 bits (1158), Expect = e-125, Method: Compositional matrix adjust.
Identities = 210/463 (45%), Positives = 315/463 (68%), Gaps = 2/463 (0%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MY + G + +++FD + E D V T M+ A D + AR++ + MP++D +AWNA+
Sbjct: 276 MYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNAL 335
Query: 61 LAGYAQCGKSREALHLFHLMQIH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
++ Y Q GK EAL +FH +Q+ ++KLN++++VS LSAC +GAL+ GRW H YI+++
Sbjct: 336 ISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHG 395
Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
++M + +AL+ MYSKCG++ K+ + F +++R+V+ W+++IGGLAM+G G +++++F
Sbjct: 396 IRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFY 455
Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
M++A V+PN VTF +V C GLV+E F M YGI P +HY C+VD+ GR+
Sbjct: 456 KMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRS 515
Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
G L++A+ I MP+ P WGALL AC+++ N + E+A +L+ELE +N GA+VLLS
Sbjct: 516 GYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLS 575
Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
NIYA+ W+ V +R+ M+ G+KK PGCS IE+D +HEF +GD HP ++ L
Sbjct: 576 NIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLH 635
Query: 360 EISRRLKLAGYVANTNPVMYDIEEEE-KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
E+ +LK GY + V+ IEEEE KE +L HSEK+AI +GLIS + IR++KNL
Sbjct: 636 EVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNL 695
Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
RVC DCH V K+IS++++REIIVRDR RFHHF+ G+CSC +W
Sbjct: 696 RVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 446 bits (1148), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/462 (47%), Positives = 317/462 (68%), Gaps = 1/462 (0%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MYA G + ++F + DVV T+M++ KCG V+ AR+MFDEMP R+ W+ M
Sbjct: 161 MYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIM 220
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
+ GYA+ +A+ LF M+ V NE MVSV+S+C HLGAL+ G A+ Y+ ++ +
Sbjct: 221 INGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHM 280
Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
+ + LGTALVDM+ +CG++ KA+ F G+ E + +W+S+I GLA++G K++ FS
Sbjct: 281 TVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQ 340
Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
M G P +VTF +VL C GLVE+G E +++M++++GIEP LEHYGC+VD+ GRAG
Sbjct: 341 MISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAG 400
Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
+L EA + I KM +KP+A GALL AC++YKNTE+ E L++++ ++ G YVLLSN
Sbjct: 401 KLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSN 460
Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAG-DETHPRYNEIEVMLG 359
IYA + WD++ ++R +MK K VKK PG S+IE+D ++++F G D+ HP +I
Sbjct: 461 IYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWE 520
Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
EI +++L GY NT +D++EEEKE ++ HSEK+AIA+G++ K G IRIVKNLR
Sbjct: 521 EILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLR 580
Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
VC DCH VTK+IS+V+ RE+IVRDRNRFHHF+ G CSC+ YW
Sbjct: 581 VCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 438 bits (1127), Expect = e-122, Method: Compositional matrix adjust.
Identities = 210/440 (47%), Positives = 296/440 (67%)
Query: 22 DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
++V MI + GD AR +FD+M +R ++WN M++GY+ G ++A+ +F M+
Sbjct: 207 EIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMK 266
Query: 82 IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
D++ N V++VSVL A + LG+L+ G W H+Y E + +++ LG+AL+DMYSKCG +
Sbjct: 267 KGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIE 326
Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
KA+ F + NV TW+++I G A++G +++ F M+QAGVRP++V ++++L C
Sbjct: 327 KAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACS 386
Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
GLVEEGR +F M G+EP +EHYGC+VDL GR+G LDEA + I MP+KP W
Sbjct: 387 HGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIW 446
Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
ALL ACRM N EMG+ + L+++ + GAYV LSN+YA NW V +R MK K
Sbjct: 447 KALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEK 506
Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
++K PGCS+I++D +HEF D++HP+ EI ML EIS +L+LAGY T V+ ++
Sbjct: 507 DIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNL 566
Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
EEE+KE+ L HSEK+A AFGLIS G PIRIVKNLR+C DCH K+ISKV+ R+I V
Sbjct: 567 EEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITV 626
Query: 442 RDRNRFHHFKEGKCSCKGYW 461
RDR RFHHF++G CSC YW
Sbjct: 627 RDRKRFHHFQDGSCSCMDYW 646
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 434 bits (1116), Expect = e-121, Method: Compositional matrix adjust.
Identities = 217/468 (46%), Positives = 309/468 (66%), Gaps = 8/468 (1%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MYA GC+ ++ F + ++ TAM+S +KCG +D A+ +FD+ ++D + W M
Sbjct: 256 MYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTM 315
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
++ Y + +EAL +F M +K + VSM SV+SAC +LG LD+ +W H I N L
Sbjct: 316 ISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGL 375
Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
+ +++ AL++MY+KCG ++ D F M RNV +W+S+I L+M+G +L LF+
Sbjct: 376 ESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFAR 435
Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
MKQ V PNEVTFV VL GC GLVEEG++ F SM EY I P LEHYGC+VDL+GRA
Sbjct: 436 MKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRAN 495
Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
L EAL+VI MP+ + WG+L++ACR++ E+G+ A+++++ELE + GA VL+SN
Sbjct: 496 LLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSN 555
Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
IYA + W+ V N+R++M+ K V K G S I+ + + HEF GD+ H + NEI L E
Sbjct: 556 IYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDE 615
Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKE-------GVPIR 413
+ +LKLAGYV + V+ D+EEEEK+D + HSEK+A+ FGL++ ++ GV IR
Sbjct: 616 VVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGV-IR 674
Query: 414 IVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
IVKNLRVC DCH K++SKV+ REIIVRDR RFH +K G CSC+ YW
Sbjct: 675 IVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust.
Identities = 204/440 (46%), Positives = 296/440 (67%), Gaps = 1/440 (0%)
Query: 23 VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
+ Q +++ A CGDV A K+FD+MPE+D +AWN+++ G+A+ GK EAL L+ M
Sbjct: 156 IYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNS 215
Query: 83 HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
+K + ++VS+LSAC +GAL G+ HVY+ + L + L+D+Y++CG + +
Sbjct: 216 KGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEE 275
Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA-GVRPNEVTFVSVLRGCC 201
A F M ++N +WTS+I GLA+NG G++++ELF M+ G+ P E+TFV +L C
Sbjct: 276 AKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACS 335
Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
G+V+EG E+F MR EY IEP +EH+GC+VDL RAG++ +A + I MPM+P+ W
Sbjct: 336 HCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIW 395
Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
LL AC ++ ++++ E A ++++LE + G YVLLSN+YA + W V +R+ M
Sbjct: 396 RTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRD 455
Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
GVKK+PG S++EV VHEF GD++HP+ + I L E++ RL+ GYV + V D+
Sbjct: 456 GVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDV 515
Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
EEEEKE+ + HSEK+AIAF LIS E PI +VKNLRVC DCH K++SKV+NREI+V
Sbjct: 516 EEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVV 575
Query: 442 RDRNRFHHFKEGKCSCKGYW 461
RDR+RFHHFK G CSC+ YW
Sbjct: 576 RDRSRFHHFKNGSCSCQDYW 595
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 420 bits (1080), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/442 (47%), Positives = 301/442 (68%), Gaps = 3/442 (0%)
Query: 23 VVCQTAMISACAKCGD--VDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH-L 79
V ++ A AK G+ V +ARK+FD++ ++D +++N++++ YAQ G S EA +F L
Sbjct: 218 VSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRL 277
Query: 80 MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
++ V N +++ +VL A +H GAL G+ H + R L+ V +GT+++DMY KCG
Sbjct: 278 VKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGR 337
Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
+ A F MK +NV +WT++I G M+G K+LELF M +GVRPN +TFVSVL
Sbjct: 338 VETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAA 397
Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAG 259
C GL EG F++M+ +G+EP LEHYGC+VDL GRAG L +A D+I +M MKP +
Sbjct: 398 CSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSI 457
Query: 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319
W +LL ACR++KN E+ E++ +L EL++ N G Y+LLS+IYA++ W V VR IMK
Sbjct: 458 IWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMK 517
Query: 320 AKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMY 379
+G+ K PG S++E++ EVH F GDE HP+ +I L E++R+L AGYV+NT+ V +
Sbjct: 518 NRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCH 577
Query: 380 DIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439
D++EEEKE TL HSEK+AIAFG+++ G + +VKNLRVC DCH+V K+ISK+ +RE
Sbjct: 578 DVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREF 637
Query: 440 IVRDRNRFHHFKEGKCSCKGYW 461
+VRD RFHHFK+G CSC YW
Sbjct: 638 VVRDAKRFHHFKDGGCSCGDYW 659
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 461 | ||||||
| 359473281 | 615 | PREDICTED: putative pentatricopeptide re | 1.0 | 0.749 | 0.791 | 0.0 | |
| 449435364 | 614 | PREDICTED: putative pentatricopeptide re | 1.0 | 0.750 | 0.731 | 0.0 | |
| 356524120 | 616 | PREDICTED: putative pentatricopeptide re | 1.0 | 0.748 | 0.754 | 0.0 | |
| 79329389 | 612 | pentatricopeptide repeat-containing prot | 1.0 | 0.753 | 0.715 | 0.0 | |
| 297805648 | 1111 | hypothetical protein ARALYDRAFT_493946 [ | 0.982 | 0.407 | 0.713 | 0.0 | |
| 326522230 | 628 | predicted protein [Hordeum vulgare subsp | 1.0 | 0.734 | 0.622 | 1e-174 | |
| 297597505 | 699 | Os01g0715700 [Oryza sativa Japonica Grou | 1.0 | 0.659 | 0.618 | 1e-170 | |
| 222619165 | 706 | hypothetical protein OsJ_03249 [Oryza sa | 1.0 | 0.652 | 0.618 | 1e-170 | |
| 218188961 | 706 | hypothetical protein OsI_03510 [Oryza sa | 1.0 | 0.652 | 0.618 | 1e-170 | |
| 212721478 | 617 | uncharacterized protein LOC100192486 [Ze | 0.997 | 0.745 | 0.600 | 1e-165 |
| >gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 789 bits (2037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/461 (79%), Positives = 411/461 (89%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MYAELG L C +VF I EPD+VCQTAM+SACAK GDV ARK+FD+M +DPIAWNAM
Sbjct: 155 MYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAM 214
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
++GY QCG+SREAL LF+LMQ VK+NEVSMVSVLSAC+HLGALDQGRWAH YIERN+L
Sbjct: 215 ISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKL 274
Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
+MT+TLGTAL+DMY+KCGNMNKAM+ FWGMKE+NVYTW+S IGGLAMNGAGEK LELFSL
Sbjct: 275 RMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSL 334
Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
MKQ V+PNE+TFVSVLRGC VVGLVEEGR+HF+SM + YGIEP LEHYGC+VDLYGRAG
Sbjct: 335 MKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAG 394
Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
LDEAL+ IN MP++PH GAWGALLNAC++Y+N EMGELASRK+VELE KNHGAYVLLSN
Sbjct: 395 HLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMGELASRKIVELEAKNHGAYVLLSN 454
Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
IYA+SK+WDRV NVRQ M KGV+K PGCSVIEV EVHEFF GD++HPRY EI+VMLGE
Sbjct: 455 IYADSKDWDRVSNVRQTMNVKGVRKQPGCSVIEVGGEVHEFFVGDKSHPRYAEIQVMLGE 514
Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
ISRRLKL+GYVANTNPV +DIEEEEKED LC HSEK+AIAFGLISL VPIRIVKNLRV
Sbjct: 515 ISRRLKLSGYVANTNPVFFDIEEEEKEDALCMHSEKIAIAFGLISLSPDVPIRIVKNLRV 574
Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
CWDCHD TKMISK FNREI+VRDRNRFHHF++G+CSCKGYW
Sbjct: 575 CWDCHDATKMISKAFNREIVVRDRNRFHHFRDGECSCKGYW 615
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/461 (73%), Positives = 407/461 (88%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MYAE+ CL C +VF+ + +PD+VCQT M+SACAKCGD+ AR +FD MP+RD ++WNAM
Sbjct: 154 MYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDIGFARNLFDSMPQRDFVSWNAM 213
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
+AGYAQ G+SREAL+LF LMQ+ VK+NEVSM+SV++ACTHLGALDQG+WAH YIE+N++
Sbjct: 214 IAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIEKNKI 273
Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
+MTV LGTALVDMY KCGN+++A+ FW M E+NVYTW++ IGGLAMNG G+K LELFS
Sbjct: 274 QMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSF 333
Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
MK G+ PNE+TF+SVL+GC VVG V+EGR HFDSM+R++GIEP LEHYGC+VDLYGRAG
Sbjct: 334 MKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRLEHYGCMVDLYGRAG 393
Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
RL+EAL+ IN MP+KPHAGAWGALLNACRMYKN E+GE ASRKL+E+E KNHGAYV LSN
Sbjct: 394 RLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIEVEGKNHGAYVSLSN 453
Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
IYA++ NWDRV NVRQ MKA+G+ KLPGCSV+EV+ EVHEFF+GD++HP Y+ IE M GE
Sbjct: 454 IYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVNGEVHEFFSGDKSHPSYDVIETMWGE 513
Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
IS+RLKLAGYVA+TN V++DIEEEEKED LCKHSEK+AIAFGL SLKEG+PIRIVKNLR+
Sbjct: 514 ISKRLKLAGYVASTNSVLFDIEEEEKEDALCKHSEKMAIAFGLFSLKEGLPIRIVKNLRI 573
Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
CWDCHDV+KMISK+F REIIVRDRNRFHHFK+G+CSCK +W
Sbjct: 574 CWDCHDVSKMISKIFEREIIVRDRNRFHHFKDGECSCKDFW 614
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/461 (75%), Positives = 402/461 (87%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MYAELGCL C VFDG EPD+V QTAM++ACAKCGD+D ARKMFDEMPERD + WNAM
Sbjct: 156 MYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAM 215
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
+AGYAQCG+SREAL +FHLMQ+ VKLNEVSMV VLSACTHL LD GRW H Y+ER ++
Sbjct: 216 IAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKV 275
Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
+MTVTLGTALVDMY+KCGN+++AM FWGMKERNVYTW+S IGGLAMNG GE+SL+LF+
Sbjct: 276 RMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFND 335
Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
MK+ GV+PN +TF+SVL+GC VVGLVEEGR+HFDSMR YGI P LEHYG +VD+YGRAG
Sbjct: 336 MKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYGRAG 395
Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
RL EAL+ IN MPM+PH GAW ALL+ACRMYKN E+GE+A RK+VELE KN GAYVLLSN
Sbjct: 396 RLKEALNFINSMPMRPHVGAWSALLHACRMYKNKELGEIAQRKIVELEDKNDGAYVLLSN 455
Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
IYA+ KNW+ V ++RQ MKAKGVKKLPGCSVIEVD EVHEF GD++HPRY+EIE+ L E
Sbjct: 456 IYADYKNWESVSSLRQTMKAKGVKKLPGCSVIEVDGEVHEFIVGDKSHPRYDEIEMKLEE 515
Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
IS+ L+L+GYVANTNPV++DIEEEEKED L KHSEKVAIAFGLISLK VPIR+V NLR+
Sbjct: 516 ISKCLRLSGYVANTNPVLFDIEEEEKEDALSKHSEKVAIAFGLISLKGVVPIRVVMNLRI 575
Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
CWDCH+V KMISK+FNREIIVRDRNRFHHFK+G+CSCK YW
Sbjct: 576 CWDCHNVAKMISKIFNREIIVRDRNRFHHFKDGECSCKDYW 616
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At5g40405 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana] gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/461 (71%), Positives = 396/461 (85%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
+YAELGCL C KVF+ I PD VC+TAM++ACA+CGDV ARK+F+ MPERDPIAWNAM
Sbjct: 152 LYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAM 211
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
++GYAQ G+SREAL++FHLMQ+ VK+N V+M+SVLSACT LGALDQGRWAH YIERN++
Sbjct: 212 ISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKI 271
Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
K+TV L T LVD+Y+KCG+M KAM+ FWGM+E+NVYTW+S + GLAMNG GEK LELFSL
Sbjct: 272 KITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSL 331
Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
MKQ GV PN VTFVSVLRGC VVG V+EG+ HFDSMR E+GIEP LEHYGCLVDLY RAG
Sbjct: 332 MKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAG 391
Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
RL++A+ +I +MPMKPHA W +LL+A RMYKN E+G LAS+K++ELET NHGAYVLLSN
Sbjct: 392 RLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSN 451
Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
IYA+S +WD V +VRQ MK+KGV+K PGCSV+EV+ EVHEFF GD++HP+Y +I+ + +
Sbjct: 452 IYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKD 511
Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
ISRRL+LAGY A+T PVM+DI+EEEKED LC HSEK AIAFG++SLKE VPIRIVKNLRV
Sbjct: 512 ISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRV 571
Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
C DCH V+ MISK+FNREIIVRDRNRFHHFK+G CSC G+W
Sbjct: 572 CGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp. lyrata] gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/454 (71%), Positives = 393/454 (86%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
+YAELGCL C KVF+ + PD VC+TAM++ACA+CGDV ARK+F+ MPE+DPIAWNAM
Sbjct: 160 LYAELGCLDSCHKVFNSVSYPDFVCRTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAM 219
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
++GYAQ G+SREAL+LFHLMQ+ VK+N VSM+SVLSACT LGALDQGRWAH YIERN++
Sbjct: 220 ISGYAQVGESREALNLFHLMQLEGVKVNGVSMISVLSACTQLGALDQGRWAHSYIERNKI 279
Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
K+TV LGT LVD+Y+KCG+M+KAM+ FWGM+E+NVYTW+S + GLAMNG GEK L+LFSL
Sbjct: 280 KITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSL 339
Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
MKQ GV PN VTFVSVLRGC VVG V+EG++HFDSMR E+GIEP L+HYGCLVDLY RAG
Sbjct: 340 MKQDGVTPNAVTFVSVLRGCSVVGFVDEGQKHFDSMRNEFGIEPQLDHYGCLVDLYARAG 399
Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
RL++A+ +I +MPMK HA W +LL+A RMYKN E+G LAS+K++ELET NHGAYVLLSN
Sbjct: 400 RLEDAVSIIQQMPMKAHAAVWSSLLHASRMYKNLELGVLASKKMLELETSNHGAYVLLSN 459
Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
IYA+S +WD V +VRQ MK+KGV+K PGCSV+EV+ EVHEFF GD++HP+YNEI+ + +
Sbjct: 460 IYADSDDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYNEIDAVWKD 519
Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
ISRRL+LAGY A+T PVM+DI+EEEKED LC HSEK AIAFG++SLK VPIRIVKNLRV
Sbjct: 520 ISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKADVPIRIVKNLRV 579
Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGK 454
C DCH V+ MISK+FNREIIVRDRNRFHHFK+G+
Sbjct: 580 CGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGR 613
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust.
Identities = 287/461 (62%), Positives = 359/461 (77%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MYA +G +G + F I PDVVC TAM+ A + GDVD AR++FD MP+RD +AWNAM
Sbjct: 168 MYAAVGDVGAVRAAFAEIVSPDVVCVTAMLGALSAGGDVDTARELFDGMPQRDHVAWNAM 227
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
L GY + G+SREAL LF MQ V ++EV++VSVL+AC +GAL++G W H Y+ +
Sbjct: 228 LTGYVRVGRSREALGLFDEMQKAGVAVSEVTLVSVLTACAQMGALERGMWVHSYVCSRGM 287
Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
+++VTLGTALVDMYSKCG + +M+ F M+ERN+YTWTS + GLAMNG GE+ LELF
Sbjct: 288 RVSVTLGTALVDMYSKCGVVTMSMEVFETMRERNIYTWTSALSGLAMNGMGEECLELFKR 347
Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
M+ AG+ PN VTFV+VLRGC V GLVEEGR FDSM+ ++ +EPWLEHYGC+VDLYGRAG
Sbjct: 348 MESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFDSMKDKHKVEPWLEHYGCMVDLYGRAG 407
Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
RLD+A+D IN MP++PH G WGALLNA R++ N ++G+ A KL E+E+KN A+VLLSN
Sbjct: 408 RLDDAVDFINSMPVEPHEGVWGALLNASRIHNNVDLGKHAMHKLTEIESKNDAAHVLLSN 467
Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
IYAES NW V VR +MK+KGVKK+PGCS IEVD +VHEFF G ++HPRY +I+ ML E
Sbjct: 468 IYAESHNWKGVSKVRNMMKSKGVKKMPGCSAIEVDGKVHEFFVGSKSHPRYKDIQTMLAE 527
Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
+S RL+L GY ANT V++DIEEEEKE + HSEK+A+AFGLI+L E IRIVKNLRV
Sbjct: 528 MSHRLRLQGYAANTKEVLFDIEEEEKEGAISLHSEKLALAFGLITLPEDTVIRIVKNLRV 587
Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
C DCHD TK+ISKVF+REI++RDRNRFHHFK G CSC+ YW
Sbjct: 588 CKDCHDYTKLISKVFDREIVMRDRNRFHHFKHGACSCRDYW 628
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group] gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 285/461 (61%), Positives = 355/461 (77%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MYA G +G + F I PDVVC TAM+ A A G+ D AR++FD MP+RD +AWNAM
Sbjct: 239 MYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAM 298
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
+AGY G+SREAL LF M+ + EV++VS L+AC LGAL++G+W H +
Sbjct: 299 IAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGM 358
Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
+++VTLGTAL+DMYSKCG + AM+ F M ERNVYTWTS + GLAMNG G L LF
Sbjct: 359 RLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKR 418
Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
M+ GV PN VTFV VLRGC + GLV+EGR FDSM+ +GI+PWLEHYGC+VDLYGRAG
Sbjct: 419 MESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAG 478
Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
RLD+A++ IN MP++PH G WGALLNA R++KN E+G+ A KL+ +E+KN A+VLLSN
Sbjct: 479 RLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSN 538
Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
IYA+S+NW V NVR +MKAKGVKK+PGCS IEV +VHEFF G +THPR+ EIE+ML E
Sbjct: 539 IYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAE 598
Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
+++RL+L GY+ANT V++DIEEE+KED + HSEK+AIAFGL++L E + IRIVKNLRV
Sbjct: 599 MNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRV 658
Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
C DCHD TKMISKVFNREI++RDRNRFHHFK+G CSCK YW
Sbjct: 659 CEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 699
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 285/461 (61%), Positives = 355/461 (77%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MYA G +G + F I PDVVC TAM+ A A G+ D AR++FD MP+RD +AWNAM
Sbjct: 246 MYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAM 305
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
+AGY G+SREAL LF M+ + EV++VS L+AC LGAL++G+W H +
Sbjct: 306 IAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGM 365
Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
+++VTLGTAL+DMYSKCG + AM+ F M ERNVYTWTS + GLAMNG G L LF
Sbjct: 366 RLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKR 425
Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
M+ GV PN VTFV VLRGC + GLV+EGR FDSM+ +GI+PWLEHYGC+VDLYGRAG
Sbjct: 426 MESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAG 485
Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
RLD+A++ IN MP++PH G WGALLNA R++KN E+G+ A KL+ +E+KN A+VLLSN
Sbjct: 486 RLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSN 545
Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
IYA+S+NW V NVR +MKAKGVKK+PGCS IEV +VHEFF G +THPR+ EIE+ML E
Sbjct: 546 IYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAE 605
Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
+++RL+L GY+ANT V++DIEEE+KED + HSEK+AIAFGL++L E + IRIVKNLRV
Sbjct: 606 MNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRV 665
Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
C DCHD TKMISKVFNREI++RDRNRFHHFK+G CSCK YW
Sbjct: 666 CEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 706
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust.
Identities = 285/461 (61%), Positives = 355/461 (77%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MYA G +G + F I PDVVC TAM+ A A G+ D AR++FD MP+RD +AWNAM
Sbjct: 246 MYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAM 305
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
+AGY G+SREAL LF M+ + EV++VS L+AC LGAL++G+W H +
Sbjct: 306 IAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGM 365
Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
+++VTLGTAL+DMYSKCG + AM+ F M ERNVYTWTS + GLAMNG G L LF
Sbjct: 366 RLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKR 425
Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
M+ GV PN VTFV VLRGC + GLV+EGR FDSM+ +GI+PWLEHYGC+VDLYGRAG
Sbjct: 426 MESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAG 485
Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
RLD+A++ IN MP++PH G WGALLNA R++KN E+G+ A KL+ +E+KN A+VLLSN
Sbjct: 486 RLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSN 545
Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
IYA+S+NW V NVR +MKAKGVKK+PGCS IEV +VHEFF G +THPR+ EIE+ML E
Sbjct: 546 IYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAE 605
Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
+++RL+L GY+ANT V++DIEEE+KED + HSEK+AIAFGL++L E + IRIVKNLRV
Sbjct: 606 MNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRV 665
Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
C DCHD TKMISKVFNREI++RDRNRFHHFK+G CSCK YW
Sbjct: 666 CEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 706
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays] gi|194690792|gb|ACF79480.1| unknown [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust.
Identities = 277/461 (60%), Positives = 348/461 (75%), Gaps = 1/461 (0%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MYA LG + + F I PDVVC TAM++A A GDVD AR +FD MP+RD +AW+AM
Sbjct: 158 MYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAM 217
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
+AGY G+SREAL LF M + E ++VSVL+AC +G LD+G+W H Y+ +
Sbjct: 218 IAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGM 277
Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
+M++ LGTALVDMYSKCG + AM+ F M ERNVYTWTS + GLAMNG G + L+LF
Sbjct: 278 QMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKR 337
Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
M+ AG++PN V+FV+VLRGC + GLV+EGR FDSM + YG++PW EHYGC+VDLYGRAG
Sbjct: 338 MEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMDK-YGVDPWPEHYGCMVDLYGRAG 396
Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
RLD+A+ IN MPM+PH G WGALLNA R++ + ++G+ A KL+ +E++N A+V LSN
Sbjct: 397 RLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIESENDAAHVQLSN 456
Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
IYAES+NW V VR +MKAKGVKK+PG S IEVD +VHEF+ G HPRYNEIE+ML E
Sbjct: 457 IYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLHPRYNEIELMLAE 516
Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
+ RRL+L GY ANT V++DIEEEEKE + HSEK+A+AFGLI L E V IRIVKNLRV
Sbjct: 517 MDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEKLALAFGLIVLPEDVEIRIVKNLRV 576
Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
C DCH K++SKVFNREI++RDRNRFHHFK G+CSC+ YW
Sbjct: 577 CMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSCRDYW 617
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 461 | ||||||
| TAIR|locus:1009023396 | 612 | AT5G40405 "AT5G40405" [Arabido | 1.0 | 0.753 | 0.715 | 4.3e-189 | |
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.997 | 0.741 | 0.462 | 3.7e-119 | |
| TAIR|locus:2144143 | 622 | AT5G06540 [Arabidopsis thalian | 1.0 | 0.741 | 0.476 | 3e-117 | |
| TAIR|locus:2081635 | 573 | AT3G62890 [Arabidopsis thalian | 1.0 | 0.804 | 0.472 | 4.9e-117 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 1.0 | 0.624 | 0.453 | 1.3e-116 | |
| TAIR|locus:2126352 | 632 | AT4G37380 [Arabidopsis thalian | 1.0 | 0.729 | 0.473 | 5.6e-116 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.954 | 0.681 | 0.477 | 5.2e-113 | |
| TAIR|locus:2130354 | 722 | AT4G14820 "AT4G14820" [Arabido | 0.997 | 0.637 | 0.467 | 1.4e-112 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.939 | 0.584 | 0.469 | 2e-111 | |
| TAIR|locus:2056794 | 630 | REME1 "required for efficiency | 0.973 | 0.712 | 0.451 | 2.1e-111 |
| TAIR|locus:1009023396 AT5G40405 "AT5G40405" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1833 (650.3 bits), Expect = 4.3e-189, P = 4.3e-189
Identities = 330/461 (71%), Positives = 396/461 (85%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
+YAELGCL C KVF+ I PD VC+TAM++ACA+CGDV ARK+F+ MPERDPIAWNAM
Sbjct: 152 LYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAM 211
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
++GYAQ G+SREAL++FHLMQ+ VK+N V+M+SVLSACT LGALDQGRWAH YIERN++
Sbjct: 212 ISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKI 271
Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
K+TV L T LVD+Y+KCG+M KAM+ FWGM+E+NVYTW+S + GLAMNG GEK LELFSL
Sbjct: 272 KITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSL 331
Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
MKQ GV PN VTFVSVLRGC VVG V+EG+ HFDSMR E+GIEP LEHYGCLVDLY RAG
Sbjct: 332 MKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAG 391
Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
RL++A+ +I +MPMKPHA W +LL+A RMYKN E+G LAS+K++ELET NHGAYVLLSN
Sbjct: 392 RLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSN 451
Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
IYA+S +WD V +VRQ MK+KGV+K PGCSV+EV+ EVHEFF GD++HP+Y +I+ + +
Sbjct: 452 IYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKD 511
Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
ISRRL+LAGY A+T PVM+DI+EEEKED LC HSEK AIAFG++SLKE VPIRIVKNLRV
Sbjct: 512 ISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRV 571
Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
C DCH V+ MISK+FNREIIVRDRNRFHHFK+G CSC G+W
Sbjct: 572 CGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612
|
|
| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1173 (418.0 bits), Expect = 3.7e-119, P = 3.7e-119
Identities = 213/461 (46%), Positives = 309/461 (67%)
Query: 2 YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML 61
YA G +FD I EPD V ++I K G +D+A +F +M E++ I+W M+
Sbjct: 160 YAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMI 219
Query: 62 AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121
+GY Q ++EAL LFH MQ DV+ + VS+ + LSAC LGAL+QG+W H Y+ + R++
Sbjct: 220 SGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIR 279
Query: 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181
M LG L+DMY+KCG M +A++ F +K+++V WT++I G A +G G +++ F M
Sbjct: 280 MDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEM 339
Query: 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241
++ G++PN +TF +VL C GLVEEG+ F SM R+Y ++P +EHYGC+VDL GRAG
Sbjct: 340 QKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGL 399
Query: 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301
LDEA I +MP+KP+A WGALL ACR++KN E+GE L+ ++ + G YV +NI
Sbjct: 400 LDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANI 459
Query: 302 YAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEI 361
+A K WD+ R++MK +GV K+PGCS I ++ HEF AGD +HP +I+ +
Sbjct: 460 HAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIM 519
Query: 362 SRRLKLAGYVANTNPVMYD-IEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRV 420
R+L+ GYV ++ D ++++E+E + +HSEK+AI +GLI K G IRI+KNLRV
Sbjct: 520 RRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRV 579
Query: 421 CWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
C DCH VTK+ISK++ R+I++RDR RFHHF++GKCSC YW
Sbjct: 580 CKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620
|
|
| TAIR|locus:2144143 AT5G06540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1155 (411.6 bits), Expect = 3.0e-117, P = 3.0e-117
Identities = 220/462 (47%), Positives = 317/462 (68%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MYA G + ++F + DVV T+M++ KCG V+ AR+MFDEMP R+ W+ M
Sbjct: 161 MYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIM 220
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
+ GYA+ +A+ LF M+ V NE MVSV+S+C HLGAL+ G A+ Y+ ++ +
Sbjct: 221 INGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHM 280
Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
+ + LGTALVDM+ +CG++ KA+ F G+ E + +W+S+I GLA++G K++ FS
Sbjct: 281 TVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQ 340
Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
M G P +VTF +VL C GLVE+G E +++M++++GIEP LEHYGC+VD+ GRAG
Sbjct: 341 MISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAG 400
Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
+L EA + I KM +KP+A GALL AC++YKNTE+ E L++++ ++ G YVLLSN
Sbjct: 401 KLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSN 460
Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDET-HPRYNEIEVMLG 359
IYA + WD++ ++R +MK K VKK PG S+IE+D ++++F GD+ HP +I
Sbjct: 461 IYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWE 520
Query: 360 EISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLR 419
EI +++L GY NT +D++EEEKE ++ HSEK+AIA+G++ K G IRIVKNLR
Sbjct: 521 EILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLR 580
Query: 420 VCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
VC DCH VTK+IS+V+ RE+IVRDRNRFHHF+ G CSC+ YW
Sbjct: 581 VCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622
|
|
| TAIR|locus:2081635 AT3G62890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1153 (410.9 bits), Expect = 4.9e-117, P = 4.9e-117
Identities = 221/468 (47%), Positives = 315/468 (67%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MY+ G L Q+VFD D+ ++++A AK G +D ARK+FDEMPER+ I+W+ +
Sbjct: 106 MYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCL 165
Query: 61 LAGYAQCGKSREALHLFHLMQIHD-----VKLNEVSMVSVLSACTHLGALDQGRWAHVYI 115
+ GY CGK +EAL LF MQ+ V+ NE +M +VLSAC LGAL+QG+W H YI
Sbjct: 166 INGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYI 225
Query: 116 ERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM-KERNVYTWTSVIGGLAMNGAGEKS 174
++ +++ + LGTAL+DMY+KCG++ +A F + +++V ++++I LAM G ++
Sbjct: 226 DKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDEC 285
Query: 175 LELFSLMKQA-GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV 233
+LFS M + + PN VTFV +L C GL+ EG+ +F M E+GI P ++HYGC+V
Sbjct: 286 FQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMV 345
Query: 234 DLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHG 293
DLYGR+G + EA I MPM+P WG+LL+ RM + + E A ++L+EL+ N G
Sbjct: 346 DLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSG 405
Query: 294 AYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNE 353
AYVLLSN+YA++ W V +R M+ KG+ K+PGCS +EV+ VHEF GDE+
Sbjct: 406 AYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESER 465
Query: 354 IEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIR 413
I ML EI +RL+ AGYV +T V+ D+ E++KE L HSEK+AIAF L+ + G P+R
Sbjct: 466 IYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVR 525
Query: 414 IVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
I+KNLR+C DCH V KMISK+F+REI+VRD NRFHHF++G CSC+ +W
Sbjct: 526 IIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573
|
|
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1149 (409.5 bits), Expect = 1.3e-116, P = 1.3e-116
Identities = 210/463 (45%), Positives = 315/463 (68%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MY + G + +++FD + E D V T M+ A D + AR++ + MP++D +AWNA+
Sbjct: 276 MYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNAL 335
Query: 61 LAGYAQCGKSREALHLFHLMQIH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
++ Y Q GK EAL +FH +Q+ ++KLN++++VS LSAC +GAL+ GRW H YI+++
Sbjct: 336 ISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHG 395
Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
++M + +AL+ MYSKCG++ K+ + F +++R+V+ W+++IGGLAM+G G +++++F
Sbjct: 396 IRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFY 455
Query: 180 LMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239
M++A V+PN VTF +V C GLV+E F M YGI P +HY C+VD+ GR+
Sbjct: 456 KMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRS 515
Query: 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299
G L++A+ I MP+ P WGALL AC+++ N + E+A +L+ELE +N GA+VLLS
Sbjct: 516 GYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLS 575
Query: 300 NIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLG 359
NIYA+ W+ V +R+ M+ G+KK PGCS IE+D +HEF +GD HP ++ L
Sbjct: 576 NIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLH 635
Query: 360 EISRRLKLAGYVANTNPVMYDIEEEE-KEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
E+ +LK GY + V+ IEEEE KE +L HSEK+AI +GLIS + IR++KNL
Sbjct: 636 EVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNL 695
Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
RVC DCH V K+IS++++REIIVRDR RFHHF+ G+CSC +W
Sbjct: 696 RVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
|
|
| TAIR|locus:2126352 AT4G37380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1143 (407.4 bits), Expect = 5.6e-116, P = 5.6e-116
Identities = 219/463 (47%), Positives = 314/463 (67%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
+YA+ G + QKVFD + E +V TAMI+ AK G+V+ AR +FD M ERD ++WN M
Sbjct: 170 VYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVM 229
Query: 61 LAGYAQCGKSREALHLFH-LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119
+ GYAQ G +AL LF L+ K +E+++V+ LSAC+ +GAL+ GRW HV+++ +R
Sbjct: 230 IDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSR 289
Query: 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFS 179
+++ V + T L+DMYSKCG++ +A+ F +++ W ++I G AM+G + +L LF+
Sbjct: 290 IRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFN 349
Query: 180 LMKQ-AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238
M+ G++P ++TF+ L+ C GLV EG F+SM +EYGI+P +EHYGCLV L GR
Sbjct: 350 EMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGR 409
Query: 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298
AG+L A + I M M + W ++L +C+++ + +G+ + L+ L KN G YVLL
Sbjct: 410 AGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLL 469
Query: 299 SNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVML 358
SNIYA +++ V VR +MK KG+ K PG S IE++ +VHEF AGD H + EI ML
Sbjct: 470 SNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTML 529
Query: 359 GEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNL 418
+IS R+K GYV NTN V+ D+EE EKE +L HSE++AIA+GLIS K G P++I KNL
Sbjct: 530 RKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNL 589
Query: 419 RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
RVC DCH VTK+ISK+ R+I++RDRNRFHHF +G CSC +W
Sbjct: 590 RVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1115 (397.6 bits), Expect = 5.2e-113, P = 5.2e-113
Identities = 210/440 (47%), Positives = 296/440 (67%)
Query: 22 DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
++V MI + GD AR +FD+M +R ++WN M++GY+ G ++A+ +F M+
Sbjct: 207 EIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMK 266
Query: 82 IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
D++ N V++VSVL A + LG+L+ G W H+Y E + +++ LG+AL+DMYSKCG +
Sbjct: 267 KGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIE 326
Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
KA+ F + NV TW+++I G A++G +++ F M+QAGVRP++V ++++L C
Sbjct: 327 KAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACS 386
Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
GLVEEGR +F M G+EP +EHYGC+VDL GR+G LDEA + I MP+KP W
Sbjct: 387 HGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIW 446
Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
ALL ACRM N EMG+ + L+++ + GAYV LSN+YA NW V +R MK K
Sbjct: 447 KALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEK 506
Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
++K PGCS+I++D +HEF D++HP+ EI ML EIS +L+LAGY T V+ ++
Sbjct: 507 DIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNL 566
Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
EEE+KE+ L HSEK+A AFGLIS G PIRIVKNLR+C DCH K+ISKV+ R+I V
Sbjct: 567 EEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITV 626
Query: 442 RDRNRFHHFKEGKCSCKGYW 461
RDR RFHHF++G CSC YW
Sbjct: 627 RDRKRFHHFQDGSCSCMDYW 646
|
|
| TAIR|locus:2130354 AT4G14820 "AT4G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1111 (396.2 bits), Expect = 1.4e-112, P = 1.4e-112
Identities = 219/468 (46%), Positives = 309/468 (66%)
Query: 1 MYAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAM 60
MYA GC+ ++ F + ++ TAM+S +KCG +D A+ +FD+ ++D + W M
Sbjct: 256 MYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTM 315
Query: 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120
++ Y + +EAL +F M +K + VSM SV+SAC +LG LD+ +W H I N L
Sbjct: 316 ISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGL 375
Query: 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSL 180
+ +++ AL++MY+KCG ++ D F M RNV +W+S+I L+M+G +L LF+
Sbjct: 376 ESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFAR 435
Query: 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240
MKQ V PNEVTFV VL GC GLVEEG++ F SM EY I P LEHYGC+VDL+GRA
Sbjct: 436 MKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRAN 495
Query: 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300
L EAL+VI MP+ + WG+L++ACR++ E+G+ A+++++ELE + GA VL+SN
Sbjct: 496 LLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSN 555
Query: 301 IYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGE 360
IYA + W+ V N+R++M+ K V K G S I+ + + HEF GD+ H + NEI L E
Sbjct: 556 IYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDE 615
Query: 361 ISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISL-KE------GVPIR 413
+ +LKLAGYV + V+ D+EEEEK+D + HSEK+A+ FGL++ KE GV IR
Sbjct: 616 VVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGV-IR 674
Query: 414 IVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
IVKNLRVC DCH K++SKV+ REIIVRDR RFH +K G CSC+ YW
Sbjct: 675 IVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1100 (392.3 bits), Expect = 2.0e-111, P = 2.0e-111
Identities = 205/437 (46%), Positives = 297/437 (67%)
Query: 28 AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
A+I +KCG+++ A +F+ +P +D I+WN ++ GY +EAL LF M
Sbjct: 306 ALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 365
Query: 88 NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV---TLGTALVDMYSKCGNMNKAM 144
N+V+M+S+L AC HLGA+D GRW HVYI++ RLK +L T+L+DMY+KCG++ A
Sbjct: 366 NDVTMLSILPACAHLGAIDIGRWIHVYIDK-RLKGVTNASSLRTSLIDMYAKCGDIEAAH 424
Query: 145 DFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204
F + +++ +W ++I G AM+G + S +LFS M++ G++P+++TFV +L C G
Sbjct: 425 QVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSG 484
Query: 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264
+++ GR F +M ++Y + P LEHYGC++DL G +G EA ++IN M M+P W +L
Sbjct: 485 MLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSL 544
Query: 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324
L AC+M+ N E+GE + L+++E +N G+YVLLSNIYA + W+ V R ++ KG+K
Sbjct: 545 LKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMK 604
Query: 325 KLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEE 384
K+PGCS IE+D VHEF GD+ HPR EI ML E+ L+ AG+V +T+ V+ ++EEE
Sbjct: 605 KVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEE 664
Query: 385 EKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDR 444
KE L HSEK+AIAFGLIS K G + IVKNLRVC +CH+ TK+ISK++ REII RDR
Sbjct: 665 WKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDR 724
Query: 445 NRFHHFKEGKCSCKGYW 461
RFHHF++G CSC YW
Sbjct: 725 TRFHHFRDGVCSCNDYW 741
|
|
| TAIR|locus:2056794 REME1 "required for efficiency of mitochondrial editing 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1056 (376.8 bits), Expect = 2.1e-111, Sum P(2) = 2.1e-111
Identities = 204/452 (45%), Positives = 297/452 (65%)
Query: 10 YCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK 69
+C + +G+ E DV ++A+I AK G+ + A +FDEM D I WN+++ G+AQ +
Sbjct: 182 HCGIIKEGL-ESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSR 240
Query: 70 SREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA 129
S AL LF M+ + ++ SVL ACT L L+ G AHV+I + + L A
Sbjct: 241 SDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNA 298
Query: 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189
LVDMY KCG++ A+ F MKER+V TW+++I GLA NG +++L+LF MK +G +PN
Sbjct: 299 LVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPN 358
Query: 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249
+T V VL C GL+E+G +F SM++ YGI+P EHYGC++DL G+AG+LD+A+ ++
Sbjct: 359 YITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLL 418
Query: 250 NKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309
N+M +P A W LL ACR+ +N + E A++K++ L+ ++ G Y LLSNIYA S+ WD
Sbjct: 419 NEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWD 478
Query: 310 RVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAG 369
V +R M+ +G+KK PGCS IEV++++H F GD +HP+ E+ L ++ RL G
Sbjct: 479 SVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIG 538
Query: 370 YVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTK 429
YV TN V+ D+E E+ ED+L HSEK+A+AFGL++L IRI KNLR+C DCH K
Sbjct: 539 YVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCK 598
Query: 430 MISKVFNREIIVRDRNRFHHFKEGKCSCKGYW 461
+ SK+ R I++RD R+HHF++GKCSC YW
Sbjct: 599 LASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FND7 | PP410_ARATH | No assigned EC number | 0.7158 | 1.0 | 0.7532 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 461 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-139 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-135 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-43 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-40 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-36 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-33 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 3e-25 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-20 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-17 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 414 bits (1065), Expect = e-139
Identities = 185/440 (42%), Positives = 266/440 (60%)
Query: 22 DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
D A+I +KCGD++ AR +FD MPE+ +AWN+MLAGYA G S EAL L++ M+
Sbjct: 258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMR 317
Query: 82 IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
V +++ + ++ + L L+ + AH + R + + TALVD+YSK G M
Sbjct: 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377
Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
A + F M +N+ +W ++I G +G G K++E+F M GV PN VTF++VL C
Sbjct: 378 DARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437
Query: 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW 261
GL E+G E F SM + I+P HY C+++L GR G LDEA +I + P KP W
Sbjct: 438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMW 497
Query: 262 GALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321
ALL ACR++KN E+G LA+ KL + + YV+L N+Y S V + +K K
Sbjct: 498 AALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557
Query: 322 GVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDI 381
G+ P C+ IEV ++ H FF+GD HP+ EI L E+ + + GYVA N ++ D+
Sbjct: 558 GLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDV 617
Query: 382 EEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIV 441
+E+E++ + HSEK+AIAFGLI+ E P++I ++ R+C DCH V K I+ V REI+V
Sbjct: 618 DEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVV 677
Query: 442 RDRNRFHHFKEGKCSCKGYW 461
RD +RFHHFK GKCSC YW
Sbjct: 678 RDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 409 bits (1053), Expect = e-135
Identities = 187/435 (42%), Positives = 278/435 (63%), Gaps = 3/435 (0%)
Query: 23 VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82
VV A+I +KC +D A ++F +PE+D I+W +++AG + EAL F M +
Sbjct: 424 VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM-L 482
Query: 83 HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142
+K N V++++ LSAC +GAL G+ H ++ R + L AL+D+Y +CG MN
Sbjct: 483 LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542
Query: 143 AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202
A + F E++V +W ++ G +G G ++ELF+ M ++GV P+EVTF+S+L C
Sbjct: 543 AWNQF-NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601
Query: 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWG 262
G+V +G E+F SM +Y I P L+HY C+VDL GRAG+L EA + INKMP+ P WG
Sbjct: 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWG 661
Query: 263 ALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322
ALLNACR++++ E+GELA++ + EL+ + G Y+LL N+YA++ WD V VR+ M+ G
Sbjct: 662 ALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721
Query: 323 VKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIE 382
+ PGCS +EV +VH F DE+HP+ EI +L ++K +G + + M +I
Sbjct: 722 LTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEI- 780
Query: 383 EEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVR 442
E K+D C HSE++AIAFGLI+ G+PI + KNL +C +CH+ K ISK+ REI VR
Sbjct: 781 EVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVR 840
Query: 443 DRNRFHHFKEGKCSC 457
D +FHHFK+G+CSC
Sbjct: 841 DTEQFHHFKDGECSC 855
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 3e-43
Identities = 86/255 (33%), Positives = 140/255 (54%), Gaps = 12/255 (4%)
Query: 20 EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
+ DVV A+I+ KCGDV AR +FD MP RD I+WNAM++GY + G+ E L LF
Sbjct: 221 DVDVV--NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFT 278
Query: 80 MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
M+ V + +++ SV+SAC LG GR H Y+ + + V++ +L+ MY G+
Sbjct: 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS 338
Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
+A F M+ ++ +WT++I G NG +K+LE ++LM+Q V P+E+T SVL
Sbjct: 339 WGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398
Query: 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHY----GCLVDLYGRAGRLDEALDVINKMPMK 255
C +G ++ G E L Y L+++Y + +D+AL+V + +P K
Sbjct: 399 CACLGDLDVG-----VKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK 453
Query: 256 PHAGAWGALLNACRM 270
+W +++ R+
Sbjct: 454 -DVISWTSIIAGLRL 467
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 7e-40
Identities = 84/245 (34%), Positives = 133/245 (54%), Gaps = 6/245 (2%)
Query: 22 DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81
DV ++I G A K+F M +D ++W AM++GY + G +AL + LM+
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALME 381
Query: 82 IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141
+V +E+++ SVLSAC LG LD G H ER L V + AL++MYSKC ++
Sbjct: 382 QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441
Query: 142 KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
KA++ F + E++V +WTS+I GL +N ++L F M ++PN VT ++ L C
Sbjct: 442 KALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACA 500
Query: 202 VVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGA 260
+G + G+E H +R G + +L + L+DLY R GR++ A + N + +
Sbjct: 501 RIGALMCGKEIHAHVLRTGIGFDGFLPN--ALLDLYVRCGRMNYAWNQFNS--HEKDVVS 556
Query: 261 WGALL 265
W LL
Sbjct: 557 WNILL 561
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 2e-36
Identities = 86/278 (30%), Positives = 141/278 (50%), Gaps = 11/278 (3%)
Query: 20 EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHL 79
EPD ++ KCG + AR++FDEMPER+ +W ++ G G REA LF
Sbjct: 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFRE 214
Query: 80 MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139
M + V +L A LG+ G+ H + + + + AL+DMYSKCG+
Sbjct: 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD 274
Query: 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199
+ A F GM E+ W S++ G A++G E++L L+ M+ +GV ++ TF ++R
Sbjct: 275 IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334
Query: 200 CCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHA 258
+ L+E ++ H +R + ++ + LVDLY + GR+++A +V ++MP K +
Sbjct: 335 FSRLALLEHAKQAHAGLIRTGFPLD--IVANTALVDLYSKWGRMEDARNVFDRMPRK-NL 391
Query: 259 GAWGALLNACRMYKNTEMG----ELASRKLVELETKNH 292
+W AL+ Y N G E+ R + E NH
Sbjct: 392 ISWNALIAG---YGNHGRGTKAVEMFERMIAEGVAPNH 426
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 5e-33
Identities = 95/333 (28%), Positives = 157/333 (47%), Gaps = 40/333 (12%)
Query: 28 AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87
AM+S + G++ A +F +MPERD +WN ++ GYA+ G EAL L+H M V+
Sbjct: 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP 185
Query: 88 NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147
+ + VL C + L +GR H ++ R ++ V + AL+ MY KCG++ A F
Sbjct: 186 DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF 245
Query: 148 WGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207
M R+ +W ++I G NG + LELF M++ V P+ +T SV+ C ++G
Sbjct: 246 DRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305
Query: 208 EGRE-HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLN 266
GRE H ++ + ++ + L+ +Y G EA V ++M K A +W A+++
Sbjct: 306 LGREMHGYVVKTGFAVD--VSVCNSLIQMYLSLGSWGEAEKVFSRMETK-DAVSWTAMIS 362
Query: 267 ACR----------MYKNTE--------------------MGEL-ASRKLVEL-ETKNHGA 294
Y E +G+L KL EL E K +
Sbjct: 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422
Query: 295 YVLLSN----IYAESKNWDRVINVRQIMKAKGV 323
YV+++N +Y++ K D+ + V + K V
Sbjct: 423 YVVVANALIEMYSKCKCIDKALEVFHNIPEKDV 455
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 3e-25
Identities = 50/132 (37%), Positives = 71/132 (53%), Gaps = 23/132 (17%)
Query: 327 PGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK 386
PGC E + +GD +HP E+ +R+K+ G V T + +D++ EE
Sbjct: 1 PGCVWSEG----KKTLSGDGSHP------TSKEELFQRIKVEGVVPETKEIGHDVDAEEF 50
Query: 387 ED------TLCKHSEKVAIAFGLISLKEGVPIRIVKNL-RVCWDCHDVTKMISKVFNREI 439
D L H+EK A+A+GL+ RI+K L R+C DCH+ + I+K REI
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGLL------TTRIIKVLKRMCGDCHEFFRYIAKYTGREI 104
Query: 440 IVRDRNRFHHFK 451
IVRD +RFHHFK
Sbjct: 105 IVRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 3e-20
Identities = 60/209 (28%), Positives = 105/209 (50%), Gaps = 4/209 (1%)
Query: 58 NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117
N+ L G+ +AL L MQ V ++E + V++ C A+++G
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL 177
+ + V LG A++ M+ + G + A F M ER++++W ++GG A G +++L L
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGCLVDLY 236
+ M AGVRP+ TF VLR C + + GRE H +R +G E ++ L+ +Y
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR--FGFELDVDVVNALITMY 232
Query: 237 GRAGRLDEALDVINKMPMKPHAGAWGALL 265
+ G + A V ++MP + +W A++
Sbjct: 233 VKCGDVVSARLVFDRMPRRDCI-SWNAMI 260
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 1e-17
Identities = 54/204 (26%), Positives = 100/204 (49%), Gaps = 7/204 (3%)
Query: 65 AQCGKSREALHLFHLMQIH-DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123
CG+ REAL LF +++ L + +++ AC L ++ + + ++E + +
Sbjct: 98 VACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPD 157
Query: 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183
+ ++ M+ KCG + A F M ERN+ +W ++IGGL G ++ LF M +
Sbjct: 158 QYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE 217
Query: 184 AGVRPNEVTFVSVLRGCCVVGLVEEGRE-HFDSMRREYGIEPWLEHYGC-LVDLYGRAGR 241
G TFV +LR +G G++ H ++ + ++ C L+D+Y + G
Sbjct: 218 DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFV---SCALIDMYSKCGD 274
Query: 242 LDEALDVINKMPMKPHAGAWGALL 265
+++A V + MP K AW ++L
Sbjct: 275 IEDARCVFDGMPEKTTV-AWNSML 297
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (188), Expect = 9e-15
Identities = 58/268 (21%), Positives = 113/268 (42%), Gaps = 49/268 (18%)
Query: 21 PDVVCQTAMISACAKCGDVDLARKMFDEMP----ERDPIAWNAMLAGYAQCGKSREALHL 76
D T +IS CAK G VD ++F EM E + + A++ G A+ G+ +A
Sbjct: 470 ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA 529
Query: 77 FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136
+ +M+ +VK + V +++SAC GA+D
Sbjct: 530 YGIMRSKNVKPDRVVFNALISACGQSGAVD------------------------------ 559
Query: 137 CGNMNKAMDFFWGMKER------NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190
+A D MK + T +++ A G +++ E++ ++ + ++
Sbjct: 560 -----RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP 614
Query: 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250
+ + C G + +D M+++ G++P + LVD+ G AG LD+A +++
Sbjct: 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673
Query: 251 KMP---MKPHAGAWGALLNACRMYKNTE 275
+K ++ +L+ AC KN +
Sbjct: 674 DARKQGIKLGTVSYSSLMGACSNAKNWK 701
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 1e-11
Identities = 65/254 (25%), Positives = 109/254 (42%), Gaps = 38/254 (14%)
Query: 9 GYCQKVFDGIHE---------PDVVCQTAMISACAKCGDVDLARKMFDEMPERD----PI 55
G + FD + E PD + A++ ACA G VD A++++ + E + P
Sbjct: 556 GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615
Query: 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI 115
+ + +Q G AL ++ M+ VK +EV +++ H G LD I
Sbjct: 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLD----KAFEI 671
Query: 116 ERNRLKMTVTLGT----ALVDMYSKCGNMNKAMDFFWGMK----ERNVYTWTSVIGGLAM 167
++ K + LGT +L+ S N KA++ + +K V T ++I L
Sbjct: 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731
Query: 168 NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD------SMRREYG 221
K+LE+ S MK+ G+ PN +T+ +L E ++ D S +E G
Sbjct: 732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVAS-------ERKDDADVGLDLLSQAKEDG 784
Query: 222 IEPWLEHYGCLVDL 235
I+P L C+ L
Sbjct: 785 IKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 1e-10
Identities = 54/273 (19%), Positives = 126/273 (46%), Gaps = 18/273 (6%)
Query: 20 EPDVVCQTAMISACAKCGDVDLARKMFDEM------PERDPIAWNAMLAGYAQCGKSREA 73
E +V A+I CA+ G V A + M P+R + +NA+++ Q G A
Sbjct: 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR--VVFNALISACGQSGAVDRA 561
Query: 74 LHLFHLM--QIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131
+ M + H + + +++ +++ AC + G +D+ + + I +K T + T V
Sbjct: 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621
Query: 132 DMYSKCGNMNKAMDFFWGMKERNVYT----WTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187
+ S+ G+ + A+ + MK++ V +++++ G +K+ E+ ++ G++
Sbjct: 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681
Query: 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247
V++ S++ C ++ E ++ + + + P + L+ +L +AL+
Sbjct: 682 LGTVSYSSLMGACSNAKNWKKALELYEDI-KSIKLRPTVSTMNALITALCEGNQLPKALE 740
Query: 248 VINKMP---MKPHAGAWGALLNACRMYKNTEMG 277
V+++M + P+ + LL A + ++G
Sbjct: 741 VLSEMKRLGLCPNTITYSILLVASERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 2e-10
Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201
+V T+ ++I G G E++L+LF+ MK+ G++PN T+ ++ G C
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 6e-08
Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 9/164 (5%)
Query: 96 LSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK---- 151
+S C +D ++ LK L T L+ +K G ++ + F M
Sbjct: 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV 503
Query: 152 ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE 211
E NV+T+ ++I G A G K+ + +M+ V+P+ V F +++ C G V+ +
Sbjct: 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563
Query: 212 HFDSMRRE-YGIEPWLEH--YGCLVDLYGRAGRLDEALDVINKM 252
M+ E + I+P +H G L+ AG++D A +V +
Sbjct: 564 VLAEMKAETHPIDP--DHITVGALMKACANAGQVDRAKEVYQMI 605
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 21 PDVVCQTAMISACAKCGDVDLARKMFDEMPER----DPIAWNAMLAGYAQ 66
PDVV +I K G V+ A K+F+EM +R + ++ ++ G +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 2e-05
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 53 DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSAC 99
D + +N ++ GY + GK EAL LF+ M+ +K N + ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 3e-04
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 20 EPDVVCQTAMISACAKCGDVDLARKMFDEMP 50
+PDVV +I + G VD A ++ DEM
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.001
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 27 TAMISACAKCGDVDLARKMFDEMPERD 53
++IS K G ++ A ++F EM E+
Sbjct: 4 NSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 55 IAWNAMLAGYAQCGKSREALHLFHLMQ 81
+ +N++++GY + GK EAL LF M+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.003
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGV 186
T+ S+I G G E++LELF MK+ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 34.4 bits (80), Expect = 0.004
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 24 VCQTAMISACAKCGDVDLARKMFDEMPERD 53
V +I K G V+ A ++F EM ER
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERG 30
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 461 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.91 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.82 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.82 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.81 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.78 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.76 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.76 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.74 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.74 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.68 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.66 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.64 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.64 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.64 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.59 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.59 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.59 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.58 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.56 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.56 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.53 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.51 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.51 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.47 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.46 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.44 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.44 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.43 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.41 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.4 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.38 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.38 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.36 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.36 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.35 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.34 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.34 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.34 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.33 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.32 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.32 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.31 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.31 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.28 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.28 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.28 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.22 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.21 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.21 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.2 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.18 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.17 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.16 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.14 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.12 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.06 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.03 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.02 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.0 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.99 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.98 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.97 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.97 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.96 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.95 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.93 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.93 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.92 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.87 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.85 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.83 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.82 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.8 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.79 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.75 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.71 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.69 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.69 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.68 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.68 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.66 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.65 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.62 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.61 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.6 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.58 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.57 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.56 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.55 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.52 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.51 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.5 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.49 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.49 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.47 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.47 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.46 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.45 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.44 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.41 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.41 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.39 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.36 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.35 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.31 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.31 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.3 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.3 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.3 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.3 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.28 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.26 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.25 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.24 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.24 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.24 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.22 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.2 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.19 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.18 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.13 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.13 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.11 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.09 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.09 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.04 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.99 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.99 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.98 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.94 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.91 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.88 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.85 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.84 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.83 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.82 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.78 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.77 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.76 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.74 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.72 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.68 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.68 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.67 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.67 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.67 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.65 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.64 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.64 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.64 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.63 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.62 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.59 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.59 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.59 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.56 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.56 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.55 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.53 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.52 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.52 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.5 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.5 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.49 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.49 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.48 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.47 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.46 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.42 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.4 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.4 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.39 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.34 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.34 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.31 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.27 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.27 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.26 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.25 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.23 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.22 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.12 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.07 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.05 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.05 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.03 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.01 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.99 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.93 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.91 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.91 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.88 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.83 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.83 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.82 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.67 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.59 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.52 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.49 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.47 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.43 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.43 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.4 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.37 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.32 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.29 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.23 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.21 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.2 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.13 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.06 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.79 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.7 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.65 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.63 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.62 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.57 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.53 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.45 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.44 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.39 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.31 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.28 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.1 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.06 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.02 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.95 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.81 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.77 | |
| PRK09687 | 280 | putative lyase; Provisional | 94.67 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.61 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.59 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.55 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.45 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.45 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.42 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.4 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.4 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.36 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.18 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.11 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.06 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.99 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.97 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.83 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.79 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.64 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.59 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.59 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.58 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.55 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.22 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.12 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.04 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.03 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.93 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.75 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.75 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.73 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.69 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.65 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.61 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.56 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.37 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.25 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.17 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.05 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.04 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.01 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.85 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.56 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 91.53 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.49 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.3 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.78 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.72 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 90.7 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 90.63 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.53 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.28 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 90.21 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.13 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.43 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.31 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.98 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.88 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 87.98 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 87.16 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.97 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.84 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.82 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.56 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.3 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 86.12 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 86.01 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.72 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 84.95 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.69 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.51 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 84.47 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.44 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 84.14 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.11 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 84.1 | |
| PRK09687 | 280 | putative lyase; Provisional | 83.89 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 83.75 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 83.69 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 83.2 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 83.08 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 83.06 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 83.01 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 82.79 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 82.43 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 81.94 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 81.53 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 81.52 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 81.5 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 81.44 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 81.38 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 81.1 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 80.69 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.25 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-101 Score=791.16 Aligned_cols=460 Identities=41% Similarity=0.716 Sum_probs=449.1
Q ss_pred ccccCCchHHHHHHhcCC---------------------------------------CCCHHHHHHHHHHHHHcCCHHHH
Q 012539 2 YAELGCLGYCQKVFDGIH---------------------------------------EPDVVCQTAMISACAKCGDVDLA 42 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~---------------------------------------~~~~~~~~~li~~~~~~g~~~~A 42 (461)
|++.|++++|.++|++|. .||..+||+||++|+++|++++|
T Consensus 199 ~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A 278 (697)
T PLN03081 199 LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278 (697)
T ss_pred HHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHH
Confidence 677888888888887652 35666778999999999999999
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC
Q 012539 43 RKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM 122 (461)
Q Consensus 43 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 122 (461)
.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|++|
T Consensus 279 ~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~ 358 (697)
T PLN03081 279 RCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL 358 (697)
T ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 012539 123 TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202 (461)
Q Consensus 123 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 202 (461)
+..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++
T Consensus 359 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 438 (697)
T PLN03081 359 DIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438 (697)
T ss_pred CeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 012539 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASR 282 (461)
Q Consensus 203 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 282 (461)
.|.+++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.+++++|+..|+..+|++|+.+|..+|+++.|..+++
T Consensus 439 ~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 439 SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 99999999999999887899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCccCCcccEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHH
Q 012539 283 KLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEIS 362 (461)
Q Consensus 283 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 362 (461)
++.++.|++..+|..|+++|++.|+|++|.+++++|++.|+++.|++||+++++.+|.|++||..||+..+++..+.++.
T Consensus 519 ~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~ 598 (697)
T PLN03081 519 KLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELM 598 (697)
T ss_pred HHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcccCCCccccccchhhhhhhhhhhhHHHHHHHhhcCCCCCCcEEEecccccCcchhhHhHHhhhhcCceEEEe
Q 012539 363 RRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVR 442 (461)
Q Consensus 363 ~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ 442 (461)
.+|++.||.||+.++++++++++++..++.|||+||++|||+++++++||||+||||+|+|||+|+|+||++.+|+||||
T Consensus 599 ~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~r 678 (697)
T PLN03081 599 KEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVR 678 (697)
T ss_pred HHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccCccCCCCCC
Q 012539 443 DRNRFHHFKEGKCSCKGYW 461 (461)
Q Consensus 443 ~~~~~h~~~~g~~s~~~~w 461 (461)
|.+|||||+||+|||+|||
T Consensus 679 d~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 679 DASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred cCCccccCCCCcccccccC
Confidence 9999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-94 Score=757.55 Aligned_cols=455 Identities=42% Similarity=0.768 Sum_probs=438.3
Q ss_pred ccccCCchHHHHHHhcC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 012539 2 YAELGCLGYCQKVFDGI----HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 77 (461)
|++.|+++.|.++++.+ ..|+..+||+||++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+.+|
T Consensus 399 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf 478 (857)
T PLN03077 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFF 478 (857)
T ss_pred HhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHH
Confidence 45566666666666443 35778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHH
Q 012539 78 HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYT 157 (461)
Q Consensus 78 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 157 (461)
++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++|+|+++|+++|++++|.++|+.+ .+|+.+
T Consensus 479 ~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s 556 (857)
T PLN03077 479 RQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVS 556 (857)
T ss_pred HHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhh
Confidence 99986 5999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHH
Q 012539 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237 (461)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 237 (461)
||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~ 636 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG 636 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999877899999999999999999
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHH
Q 012539 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317 (461)
Q Consensus 238 ~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 317 (461)
+.|++++|.+++++|+.+||..+|++|+.+|..+++.+.++.+.+++.+++|++...|..|.++|+..|+|++|.++++.
T Consensus 637 r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 637 RAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred hCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCccCCcccEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhhhhhhHHH
Q 012539 318 MKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSEKV 397 (461)
Q Consensus 318 m~~~g~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~l 397 (461)
|++.|++++|++|||++++.+|.|.+||.+||+.++++..++++..+|++.||.||+..+++ .++++|+..++.|||+|
T Consensus 717 M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~-~~~~~k~~~~~~hse~l 795 (857)
T PLN03077 717 MRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMD-EIEVSKDDIFCGHSERL 795 (857)
T ss_pred HHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhcc-ccHHHHHHHHHhccHHH
Confidence 99999999999999999999999999999999999999999999999999999999988884 57788999999999999
Q ss_pred HHHHhhcCCCCCCcEEEecccccCcchhhHhHHhhhhcCceEEEecCCcccccccCccCCCC
Q 012539 398 AIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEGKCSCKG 459 (461)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~g~~s~~~ 459 (461)
|++|||+++|+++||||+||||+|+|||+++|+||++.+|+|||||.+|||||+||+|||+|
T Consensus 796 a~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 796 AIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999997
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-57 Score=475.33 Aligned_cols=446 Identities=23% Similarity=0.369 Sum_probs=386.1
Q ss_pred ccccCCchHHHHHHhcCC----CCC-----------------------------------HHHHHHHHHHHHHcCCHHHH
Q 012539 2 YAELGCLGYCQKVFDGIH----EPD-----------------------------------VVCQTAMISACAKCGDVDLA 42 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~----~~~-----------------------------------~~~~~~li~~~~~~g~~~~A 42 (461)
|++.|++++|.++|+.|. .|| +.+||+||.+|+++|+++.|
T Consensus 162 ~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 241 (857)
T PLN03077 162 YAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSA 241 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHH
Confidence 677888888888887652 344 45567888899999999999
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC
Q 012539 43 RKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM 122 (461)
Q Consensus 43 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 122 (461)
.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..+.+.|+.|
T Consensus 242 ~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 321 (857)
T PLN03077 242 RLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321 (857)
T ss_pred HHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 012539 123 TVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202 (461)
Q Consensus 123 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 202 (461)
|..+||+|+.+|+++|++++|.++|++|..||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++
T Consensus 322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~ 401 (857)
T PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401 (857)
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 012539 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASR 282 (461)
Q Consensus 203 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 282 (461)
.|++++|.++++.+.+. |+.|+..+|++|+++|+++|++++|.++|++|. +||..+|+++|.+|.+.|+.++|..+|+
T Consensus 402 ~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 402 LGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred cchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999875 999999999999999999999999999999997 6899999999999999999999999999
Q ss_pred HHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCccCCcccEEEeC-------------------CE---EEE
Q 012539 283 KLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVD-------------------RE---VHE 340 (461)
Q Consensus 283 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~-------------------~~---~~~ 340 (461)
+|.+..++|..+|..++.+|++.|.++.+.+++..|.+.|+.++.......++ .. ...
T Consensus 480 ~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~ 559 (857)
T PLN03077 480 QMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNI 559 (857)
T ss_pred HHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHH
Confidence 99977677788999999999999999999999999988888665432111000 00 011
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhh---hhhhHHHHHHHhhcCCCCCCcEEEecc
Q 012539 341 FFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTL---CKHSEKVAIAFGLISLKEGVPIRIVKN 417 (461)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~ 417 (461)
++.|+..|++.+++.. ++++|.+.|+.||..++...+..+.+.+.+ ....+.+...+|+.+...++. ++++.
T Consensus 560 lI~~~~~~G~~~~A~~----lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~-~lv~~ 634 (857)
T PLN03077 560 LLTGYVAHGKGSMAVE----LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA-CVVDL 634 (857)
T ss_pred HHHHHHHcCCHHHHHH----HHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH-HHHHH
Confidence 2455667777777766 788899999999999888777777665554 334556666788777766665 78999
Q ss_pred cccCcchhhHhHHhhhhcCc------eEEEecCCcccccccCc
Q 012539 418 LRVCWDCHDVTKMISKVFNR------EIIVRDRNRFHHFKEGK 454 (461)
Q Consensus 418 ~~~c~~~~~~~~~~~~~~~~------~~~~~~~~~~h~~~~g~ 454 (461)
+.++|+..+|.++|.+|+.. ..++..|+.+.+.+.|+
T Consensus 635 l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 635 LGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred HHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 99999999999999999743 23445555555554443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-54 Score=444.76 Aligned_cols=420 Identities=22% Similarity=0.329 Sum_probs=362.9
Q ss_pred ccccCCchHHHHHHhcC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 012539 2 YAELGCLGYCQKVFDGI----HEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 77 (461)
|++.++++.|.+++..+ ..||+.+||.|+.+|+++|+++.|.++|++|++||+++||+||.+|++.|++++|+++|
T Consensus 133 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf 212 (697)
T PLN03081 133 CIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALF 212 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHH
Confidence 56778888888888665 46999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHH
Q 012539 78 HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYT 157 (461)
Q Consensus 78 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 157 (461)
++|.+.|+.||..||+.++.+|+..|..+.+.+++..+.+.|+.||..++|+|+++|+++|++++|.++|++|.++|+++
T Consensus 213 ~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt 292 (697)
T PLN03081 213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVA 292 (697)
T ss_pred HHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHH
Q 012539 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237 (461)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 237 (461)
||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+. |+.|+..+|++|+++|+
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~ 371 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYS 371 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999875 99999999999999999
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcc-CCCcchHHHHHHHHhhcCChhHHHHHHH
Q 012539 238 RAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE-TKNHGAYVLLSNIYAESKNWDRVINVRQ 316 (461)
Q Consensus 238 ~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 316 (461)
++|++++|.++|++|. +||..+||+||.+|.++|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|+
T Consensus 372 k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~ 450 (697)
T PLN03081 372 KWGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQ 450 (697)
T ss_pred HCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 9999999999999997 6899999999999999999999999999998754 5567899999999999999999999999
Q ss_pred HHHh-CCCccCCcccEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhhhhhhH
Q 012539 317 IMKA-KGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKHSE 395 (461)
Q Consensus 317 ~m~~-~g~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~ 395 (461)
.|.+ .|+.|+..... .++.++...++.+++++ .+++.+..||..++...+..+.+.+.+- ..+
T Consensus 451 ~m~~~~g~~p~~~~y~--------~li~~l~r~G~~~eA~~-------~~~~~~~~p~~~~~~~Ll~a~~~~g~~~-~a~ 514 (697)
T PLN03081 451 SMSENHRIKPRAMHYA--------CMIELLGREGLLDEAYA-------MIRRAPFKPTVNMWAALLTACRIHKNLE-LGR 514 (697)
T ss_pred HHHHhcCCCCCccchH--------hHHHHHHhcCCHHHHHH-------HHHHCCCCCCHHHHHHHHHHHHHcCCcH-HHH
Confidence 9986 58876543211 12334445566666554 3445688898765444444433322221 111
Q ss_pred HH-HHHHhhcCCCCCCcEEEecccccCcchhhHhHHhhhhcCceE
Q 012539 396 KV-AIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREI 439 (461)
Q Consensus 396 ~l-~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 439 (461)
.. ...+++-+.....-+.+++.+..+|+..+|.+++..|..+.+
T Consensus 515 ~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 515 LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 11 112343333233344567789999999999999999998865
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-53 Score=439.81 Aligned_cols=431 Identities=18% Similarity=0.248 Sum_probs=361.1
Q ss_pred ccccCCchHHHHHHhcCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCC----CCChhHHHHHHHHHHHcCChHHH
Q 012539 2 YAELGCLGYCQKVFDGIH----EPDVVCQTAMISACAKCGDVDLARKMFDEMP----ERDPIAWNAMLAGYAQCGKSREA 73 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A 73 (461)
|++.|+++.|.++|+.|. .||..+|++||.+|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 678899999999997764 6899999999999999999999999999998 57999999999999999999999
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHH--cCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 012539 74 LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER--NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK 151 (461)
Q Consensus 74 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 151 (461)
+++|++|.+.|+.||..||+.++.+|++.|++++|.++|.+|.+ .++.||..+|++|+.+|+++|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999986 6789999999999999999999999999999998
Q ss_pred C----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChh
Q 012539 152 E----RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE 227 (461)
Q Consensus 152 ~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 227 (461)
+ |+..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+. |+.|+..
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-G~~pd~~ 685 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTV 685 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHH
Confidence 5 5779999999999999999999999999999999999999999999999999999999999999875 9999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcc-CCCcchHHHHHHHHh
Q 012539 228 HYGCLVDLYGRAGRLDEALDVINKM---PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE-TKNHGAYVLLSNIYA 303 (461)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~ 303 (461)
+|++||.+|++.|++++|.++|++| +..||..+|++||.+|++.|++++|.++|++|.+.+ .+|..+|..|+.+|.
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999998 578999999999999999999999999999998654 556789999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCccCCcccEEEeC-------------CEEEEEEeCCCCCCC-hHHHHHHHHHHHHHHHHcC
Q 012539 304 ESKNWDRVINVRQIMKAKGVKKLPGCSVIEVD-------------REVHEFFAGDETHPR-YNEIEVMLGEISRRLKLAG 369 (461)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~-------------~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~m~~~g 369 (461)
+.|++++|.+++++|.+.|+.|+.......++ ..+..|-.+ ++. ...-......++++|.+.|
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g---~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSG---RPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc---ccccccchHHHHHHHHHHHHHCC
Confidence 99999999999999999999887632211111 111111111 111 1112233556899999999
Q ss_pred cccCCCccccccchhhhhhhhhhhhHHHHHHHhhcCCCCCCcE--EEecccccCcc-hhhHhHHhhhhcCceEE
Q 012539 370 YVANTNPVMYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPI--RIVKNLRVCWD-CHDVTKMISKVFNREII 440 (461)
Q Consensus 370 ~~pd~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~c~~-~~~~~~~~~~~~~~~~~ 440 (461)
+.||..++...+....+.+. ......+-..+++.+.+++... .+++.+ +. -++|..++..+..+.|+
T Consensus 843 i~Pd~~T~~~vL~cl~~~~~-~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 843 TLPTMEVLSQVLGCLQLPHD-ATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVV 912 (1060)
T ss_pred CCCCHHHHHHHHHHhccccc-HHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCC
Confidence 99998777655532111111 2234455556666665555421 233433 32 25799999998876543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-51 Score=423.95 Aligned_cols=362 Identities=18% Similarity=0.267 Sum_probs=329.6
Q ss_pred ccccCCchHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPE----RDPIAWNAMLAGYAQCGKSREALHLF 77 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~ 77 (461)
|.+.|.+++|.++|+.|..||..+|+.++.+|++.|+++.|.++|+.|.+ ||+.+||+||.+|++.|+.++|.++|
T Consensus 416 ~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf 495 (1060)
T PLN03218 416 CKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF 495 (1060)
T ss_pred HHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 56778889999999999889999999999999999999999999999974 68999999999999999999999999
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC------
Q 012539 78 HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK------ 151 (461)
Q Consensus 78 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------ 151 (461)
++|.+.|+.||..||+.++.+|++.|++++|.++|..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.
T Consensus 496 ~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi 575 (1060)
T PLN03218 496 HEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHH
Q 012539 152 ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGC 231 (461)
Q Consensus 152 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 231 (461)
.||..+|++||.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+. |+.||..+|+.
T Consensus 576 ~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~Tyns 654 (1060)
T PLN03218 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSA 654 (1060)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999875 99999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcc-CCCcchHHHHHHHHhhcCC
Q 012539 232 LVDLYGRAGRLDEALDVINKM---PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE-TKNHGAYVLLSNIYAESKN 307 (461)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~ 307 (461)
++++|++.|++++|.+++++| +..||..+|++||.+|++.|++++|.++|++|.+.+ .++..+|+.|+.+|++.|+
T Consensus 655 LI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~ 734 (1060)
T PLN03218 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 999999999999999999999 678999999999999999999999999999998653 4567799999999999999
Q ss_pred hhHHHHHHHHHHhCCCccCCcccEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCc
Q 012539 308 WDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNP 376 (461)
Q Consensus 308 ~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~ 376 (461)
+++|.+++++|.+.|+.|+...... ++.++...+..+++.. ++..|.+.|+.||..+
T Consensus 735 ~eeAlelf~eM~~~Gi~Pd~~Ty~s--------LL~a~~k~G~le~A~~----l~~~M~k~Gi~pd~~t 791 (1060)
T PLN03218 735 LPKALEVLSEMKRLGLCPNTITYSI--------LLVASERKDDADVGLD----LLSQAKEDGIKPNLVM 791 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHH--------HHHHHHHCCCHHHHHH----HHHHHHHcCCCCCHHH
Confidence 9999999999999999876543322 1334445566555555 8888999999999643
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-30 Score=197.24 Aligned_cols=106 Identities=63% Similarity=1.055 Sum_probs=95.6
Q ss_pred cccEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccchhhh--------hhhhhhhhHHHHH
Q 012539 328 GCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEK--------EDTLCKHSEKVAI 399 (461)
Q Consensus 328 ~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~~~l~~ 399 (461)
++||+++ |.|++|+.+||+. ++..+|...|+.|++..+.+++.++++ +..++.|||+||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 5789866 8999999999998 366677888999999998887776655 5688999999999
Q ss_pred HHhhcCCCCCCcEEEeccc-ccCcchhhHhHHhhhhcCceEEEecCCcccccc
Q 012539 400 AFGLISLKEGVPIRIVKNL-RVCWDCHDVTKMISKVFNREIIVRDRNRFHHFK 451 (461)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~-~~c~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 451 (461)
+||++++ +|+||+ |+|+|||+++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999996
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-21 Score=205.74 Aligned_cols=315 Identities=10% Similarity=0.059 Sum_probs=235.5
Q ss_pred ccccCCchHHHHHHhcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIH---EPDVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALH 75 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 75 (461)
|.+.|+.++|...|+++. ..+...+..++..|.+.|++++|..+++.+.+ .++..|..+...|.+.|++++|+.
T Consensus 543 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 622 (899)
T TIGR02917 543 YLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVS 622 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 456788888888887764 24566777788888888888888888887653 356778888888888888888888
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 012539 76 LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--- 152 (461)
Q Consensus 76 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 152 (461)
.|+++.+.. +.+...+..+..++...|++++|...+..+.+.. +.+...+..++..+...|++++|.++++.+.+
T Consensus 623 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 700 (899)
T TIGR02917 623 SFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP 700 (899)
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 888887653 3356667777788888888888888888887764 45567777788888888888888888887763
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHH
Q 012539 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCL 232 (461)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 232 (461)
.+...+..+...+...|++++|++.|+++... .|+..++..+..++...|+.++|...++.+.+. .+.++..+..+
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~l 776 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTAL 776 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 35567777778888888888888888887774 344466667777778888888888888777653 34456777777
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhH
Q 012539 233 VDLYGRAGRLDEALDVINKM-PMK-PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310 (461)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 310 (461)
...|...|++++|...|+++ ... ++..+++.+...+...|+ .+|...++++.+..|+++..+..++.++...|++++
T Consensus 777 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 855 (899)
T TIGR02917 777 AELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADR 855 (899)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH
Confidence 78888888888888888776 223 355577777777777777 667777777777777777777777777777788888
Q ss_pred HHHHHHHHHhCCC
Q 012539 311 VINVRQIMKAKGV 323 (461)
Q Consensus 311 a~~~~~~m~~~g~ 323 (461)
|.++++++.+.+.
T Consensus 856 A~~~~~~a~~~~~ 868 (899)
T TIGR02917 856 ALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHhhCC
Confidence 8887777776554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.4e-21 Score=202.90 Aligned_cols=314 Identities=13% Similarity=0.037 Sum_probs=274.0
Q ss_pred ccccCCchHHHHHHhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIHE---PDVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALH 75 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 75 (461)
|.+.|++++|.+.|+.+.. .+..++..+...+.+.|++++|...|+++.+ .+...+..++..|...|++++|+.
T Consensus 509 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 509 DIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHH
Confidence 5578999999999988753 4678899999999999999999999998753 356788899999999999999999
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 012539 76 LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--- 152 (461)
Q Consensus 76 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 152 (461)
+++++.... +.+..+|..+..++...|++++|...+..+.+.. +.+...+..+...|.+.|++++|..+|+++.+
T Consensus 589 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 666 (899)
T TIGR02917 589 ILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP 666 (899)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 999998753 5577889999999999999999999999998875 55677888899999999999999999998763
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHH
Q 012539 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCL 232 (461)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 232 (461)
.+..+|..++..+...|++++|.++++.+.+.. +++...+..+...+...|++++|...|..+.. ..|+..++..+
T Consensus 667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l 742 (899)
T TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKL 742 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHH
Confidence 467899999999999999999999999998864 45677788888899999999999999999875 35666788889
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhH
Q 012539 233 VDLYGRAGRLDEALDVINKM-PMK-PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310 (461)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 310 (461)
+.++.+.|++++|.+.++++ ... .+...+..+...|...|+.++|...|+++.+..|+++.++..++.++...|+ .+
T Consensus 743 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~ 821 (899)
T TIGR02917 743 HRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PR 821 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HH
Confidence 99999999999999999887 323 4566888888889999999999999999999999999999999999999999 88
Q ss_pred HHHHHHHHHhCC
Q 012539 311 VINVRQIMKAKG 322 (461)
Q Consensus 311 a~~~~~~m~~~g 322 (461)
|+..+++..+..
T Consensus 822 A~~~~~~~~~~~ 833 (899)
T TIGR02917 822 ALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHHHhhC
Confidence 999999987753
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-21 Score=184.82 Aligned_cols=294 Identities=13% Similarity=0.074 Sum_probs=245.6
Q ss_pred HHHHHHcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHhccC
Q 012539 30 ISACAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN---EVSMVSVLSACTHLG 103 (461)
Q Consensus 30 i~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~~ 103 (461)
...+...|++++|...|+++.+. ++.+|..+...+...|++++|+.+++.+...+..++ ..++..+...+...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 44567889999999999998753 456889999999999999999999999987542222 246788889999999
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--------HHHHHHHHHHHHhCCChHHHH
Q 012539 104 ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN--------VYTWTSVIGGLAMNGAGEKSL 175 (461)
Q Consensus 104 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~ 175 (461)
+++.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999998764 5567889999999999999999999999986421 124567788899999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 012539 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW--LEHYGCLVDLYGRAGRLDEALDVINKM- 252 (461)
Q Consensus 176 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~- 252 (461)
+.|+++.+.. +.+...+..+...+...|++++|.++++++.+. .|+ ..++..++.+|.+.|++++|...++++
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999998753 234567778888999999999999999999753 333 467888999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhh---cCChhHHHHHHHHHHhCCCccCCcc
Q 012539 253 PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAE---SKNWDRVINVRQIMKAKGVKKLPGC 329 (461)
Q Consensus 253 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~ 329 (461)
...|+...+..+...+.+.|++++|..+++++.+..|++. .+..++..+.. .|+.+++..++++|.++++.++|.+
T Consensus 277 ~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 277 EEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 4567777778888889999999999999999999998875 66666666553 5689999999999999999988873
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-20 Score=178.74 Aligned_cols=280 Identities=14% Similarity=0.091 Sum_probs=236.4
Q ss_pred cccCCchHHHHHHhcCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCC-------hhHHHHHHHHHHHcCChHH
Q 012539 3 AELGCLGYCQKVFDGIHE--P-DVVCQTAMISACAKCGDVDLARKMFDEMPERD-------PIAWNAMLAGYAQCGKSRE 72 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~~~ 72 (461)
...|++++|...|.++.+ | +..++..+...+.+.|++++|..+++.+.... ...+..++..|.+.|++++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 467999999999999863 3 55688999999999999999999999876531 2468899999999999999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHH
Q 012539 73 ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT----VTLGTALVDMYSKCGNMNKAMDFFW 148 (461)
Q Consensus 73 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~ 148 (461)
|+.+|+++.+.. +++..++..++..+...|++++|.+.+..+.+.+..+. ...+..++..+.+.|++++|.+.|+
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999998753 45678899999999999999999999999998764332 2245668888999999999999999
Q ss_pred hcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC
Q 012539 149 GMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW 225 (461)
Q Consensus 149 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 225 (461)
++.+ .+...+..+...|.+.|++++|+++|+++...+......++..++.+|...|++++|...++.+.+. .|+
T Consensus 205 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~ 281 (389)
T PRK11788 205 KALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPG 281 (389)
T ss_pred HHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC
Confidence 9864 3467888899999999999999999999987532222466788999999999999999999998753 577
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHhh
Q 012539 226 LEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGAWGALLNACRM---YKNTEMGELASRKLVE 286 (461)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~ 286 (461)
...+..++..+.+.|++++|..+++++ ...|+...++.++..+.. .|+.+++..+++++.+
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 777789999999999999999999877 557999999988888664 5688999999998885
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.6e-18 Score=170.74 Aligned_cols=314 Identities=11% Similarity=0.020 Sum_probs=183.8
Q ss_pred ccccCCchHHHHHHhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIH--EPDVVCQTAMISACAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCGKSREALHL 76 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~ 76 (461)
|.+.|++++|+..|++.+ .|++..|..+..+|.+.|++++|+..++...+. ++..|..+..+|...|++++|+.-
T Consensus 137 ~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~ 216 (615)
T TIGR00990 137 AYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLD 216 (615)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 456788999999998865 478888888888999999999999888876542 455777788888888888877654
Q ss_pred HHHHH---------------------------------------------------------------------------
Q 012539 77 FHLMQ--------------------------------------------------------------------------- 81 (461)
Q Consensus 77 ~~~m~--------------------------------------------------------------------------- 81 (461)
|....
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (615)
T TIGR00990 217 LTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQ 296 (615)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHH
Confidence 43321
Q ss_pred -------------------------HCC-CCc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 012539 82 -------------------------IHD-VKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMY 134 (461)
Q Consensus 82 -------------------------~~~-~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 134 (461)
..+ ..| +...+..+...+...|++++|...++..++.. +.....|..+...+
T Consensus 297 l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~ 375 (615)
T TIGR00990 297 LGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMN 375 (615)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence 111 011 11223333334444555555555555555442 22334445555555
Q ss_pred HhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHH
Q 012539 135 SKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGR 210 (461)
Q Consensus 135 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~ 210 (461)
...|++++|...|+...+ .+...|..+...+...|++++|+..|++..+. .|+ ...+..+..++.+.|++++|.
T Consensus 376 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~ 453 (615)
T TIGR00990 376 LELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSM 453 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHH
Confidence 555666666655554432 23455566666666666666666666666553 232 444445555555666666666
Q ss_pred HHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHhcCChHHHHHHH
Q 012539 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHA-G-------AWGALLNACRMYKNTEMGELAS 281 (461)
Q Consensus 211 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~ll~~~~~~~~~~~a~~~~ 281 (461)
..|+...+. .+.++..+..+...+...|++++|.+.|++. ...|+. . .++..+..+...|++++|..++
T Consensus 454 ~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~ 531 (615)
T TIGR00990 454 ATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531 (615)
T ss_pred HHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 666665432 1223455666666666666666666666654 222221 0 1111112233346666666666
Q ss_pred HHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 282 RKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 282 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
+++.+++|++..++..++.++.+.|++++|.+.+++..+
T Consensus 532 ~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 532 EKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666666666666666666677777777666666544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-17 Score=169.30 Aligned_cols=312 Identities=8% Similarity=-0.059 Sum_probs=254.1
Q ss_pred cccCCchHHHHHHhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChHHHHHH
Q 012539 3 AELGCLGYCQKVFDGIHE---PDVVCQTAMISACAKCGDVDLARKMFDEMPE--R-DPIAWNAMLAGYAQCGKSREALHL 76 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~ 76 (461)
.+.|++++|..+++.... .+...+..++.+....|+++.|...|+++.+ | +...|..+...+.+.|++++|+..
T Consensus 53 ~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~ 132 (656)
T PRK15174 53 LRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADL 132 (656)
T ss_pred HhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 467999999999887642 3455666677777889999999999999864 3 567899999999999999999999
Q ss_pred HHHHHHCCCCc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--
Q 012539 77 FHLMQIHDVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER-- 153 (461)
Q Consensus 77 ~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 153 (461)
|+++.+. .| +...+..+..++...|++++|...+..+...... +...+..+ ..+...|++++|...++.+.+.
T Consensus 133 l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~ 208 (656)
T PRK15174 133 AEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFA 208 (656)
T ss_pred HHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC
Confidence 9999885 44 5667888889999999999999999988776533 33344333 3478899999999999987643
Q ss_pred --CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHH----HHHHHHHhhhhcCCcc-Ch
Q 012539 154 --NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE----GREHFDSMRREYGIEP-WL 226 (461)
Q Consensus 154 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~p-~~ 226 (461)
+...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|+.++ |...|+.+.+ +.| +.
T Consensus 209 ~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~ 284 (656)
T PRK15174 209 LERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNV 284 (656)
T ss_pred CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCH
Confidence 33445556778899999999999999998753 3346677788889999999886 7999998874 345 47
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhh
Q 012539 227 EHYGCLVDLYGRAGRLDEALDVINKM-PMKPHA-GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAE 304 (461)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 304 (461)
..+..+...+.+.|++++|...+++. ...|+. ..+..+...+...|++++|...++++.+..|.+...+..+..++..
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~ 364 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQ 364 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 78899999999999999999999888 445654 4677777889999999999999999999999887666667888999
Q ss_pred cCChhHHHHHHHHHHhCC
Q 012539 305 SKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 305 ~g~~~~a~~~~~~m~~~g 322 (461)
.|++++|.+.+++..+..
T Consensus 365 ~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 365 AGKTSEAESVFEHYIQAR 382 (656)
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 999999999999987654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-19 Score=165.00 Aligned_cols=309 Identities=14% Similarity=0.128 Sum_probs=178.5
Q ss_pred cCCchHHHHHHhcCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChh---HHHHHHHHHHHcCChHHHHHHHH
Q 012539 5 LGCLGYCQKVFDGIHE--P-DVVCQTAMISACAKCGDVDLARKMFDEMPERDPI---AWNAMLAGYAQCGKSREALHLFH 78 (461)
Q Consensus 5 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~ 78 (461)
.|++++|+..++.+.+ | .+..|..+..++...|+.+.|...|.+..+-|+. ..+.+.......|+.++|...|.
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 4555666666655542 2 3445555666666666666655555554432221 11122233333444444444444
Q ss_pred HHHHCCCCcC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-C
Q 012539 79 LMQIHDVKLN-EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK--ER-N 154 (461)
Q Consensus 79 ~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~ 154 (461)
+..+. .|. .+.|+.+...+-..|+...|++.|.+.++.. |.-...|-.|.+.|...+.++.|...|.+.. .| .
T Consensus 209 kAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~ 285 (966)
T KOG4626|consen 209 KAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH 285 (966)
T ss_pred HHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc
Confidence 44432 221 2244455555555666666666666666543 2223445556666666666666666666544 22 3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-hhHHHHH
Q 012539 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHYGCL 232 (461)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 232 (461)
.+++..|...|-.+|..+-|+..|++..+ +.|+ ...|+.|..++...|++.+|.+.+...+. +.|+ ....+.|
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~---l~p~hadam~NL 360 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR---LCPNHADAMNNL 360 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH---hCCccHHHHHHH
Confidence 35555555666666777777777776665 4555 55677777777777777777777766653 3343 4556666
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhH
Q 012539 233 VDLYGRAGRLDEALDVINKM-PMKPHAG-AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310 (461)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 310 (461)
...|...|.+++|..+|... .+.|.-. ..+.|...|.+.|++++|...|++++++.|.-..+|+.+.+.|-..|+.+.
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 66777777777777766655 4445433 556666666777777777777777777777666666677777777777777
Q ss_pred HHHHHHHHHhC
Q 012539 311 VINVRQIMKAK 321 (461)
Q Consensus 311 a~~~~~~m~~~ 321 (461)
|.+.+.+.+..
T Consensus 441 A~q~y~rAI~~ 451 (966)
T KOG4626|consen 441 AIQCYTRAIQI 451 (966)
T ss_pred HHHHHHHHHhc
Confidence 76666665543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-18 Score=159.07 Aligned_cols=311 Identities=16% Similarity=0.181 Sum_probs=168.7
Q ss_pred ccccCCchHHHHHHhcCCC--CCHHH-HHHHHHHHHHcCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHHcCChHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIHE--PDVVC-QTAMISACAKCGDVDLARKMFDEMPE--RD-PIAWNAMLAGYAQCGKSREALH 75 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~ 75 (461)
|...|+.+.|.+.|...++ |+... .+.+....-..|++++|...+.+..+ |. .+.|+.|...+-.+|+...|+.
T Consensus 160 l~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq 239 (966)
T KOG4626|consen 160 LVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQ 239 (966)
T ss_pred HHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHH
Confidence 3455666666666655543 33222 22233334445666666555554332 21 3456666666666666666666
Q ss_pred HHHHHHHCCCCcC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 012539 76 LFHLMQIHDVKLN-EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-- 152 (461)
Q Consensus 76 ~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 152 (461)
-|++... +.|+ ...|..+...|...+.++.|...+.+..... +....++..|...|...|.++-|+..|++..+
T Consensus 240 ~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~ 316 (966)
T KOG4626|consen 240 HYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ 316 (966)
T ss_pred HHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC
Confidence 6665554 2333 2355555666666666666666555555432 22334444455555566666666666655543
Q ss_pred CC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-hhHH
Q 012539 153 RN-VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHY 229 (461)
Q Consensus 153 ~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~ 229 (461)
|+ ..+|+.|..++-..|+..+|.+.|++.... .|+ ....+.|...+...|.+++|..+|.... .+.|. ....
T Consensus 317 P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~ 391 (966)
T KOG4626|consen 317 PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAH 391 (966)
T ss_pred CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhh
Confidence 22 345666666666666666666666655552 333 4455555556666666666666655543 33443 3445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCC
Q 012539 230 GCLVDLYGRAGRLDEALDVINKM-PMKPHAG-AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKN 307 (461)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 307 (461)
+.|...|-..|++++|...+++. .++|+.. .++.+...|...|++..|.+.+.+++..+|.-..++..|..+|-.+|+
T Consensus 392 nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn 471 (966)
T KOG4626|consen 392 NNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN 471 (966)
T ss_pred hhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC
Confidence 55555666666666666655555 4455443 555555556666666666666666666666555555566666666666
Q ss_pred hhHHHHHHHHHHh
Q 012539 308 WDRVINVRQIMKA 320 (461)
Q Consensus 308 ~~~a~~~~~~m~~ 320 (461)
..+|+.-+++..+
T Consensus 472 i~~AI~sY~~aLk 484 (966)
T KOG4626|consen 472 IPEAIQSYRTALK 484 (966)
T ss_pred cHHHHHHHHHHHc
Confidence 6666665555544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.4e-17 Score=163.24 Aligned_cols=291 Identities=7% Similarity=-0.064 Sum_probs=241.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccC
Q 012539 27 TAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLG 103 (461)
Q Consensus 27 ~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 103 (461)
..++..+.+.|++++|..+++.... .+...+..++.+....|++++|+..|+++.... +.+...+..+...+...|
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 3456677899999999999998753 356677788888889999999999999999853 235667888889999999
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhCCChHHHHHHHHH
Q 012539 104 ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--R-NVYTWTSVIGGLAMNGAGEKSLELFSL 180 (461)
Q Consensus 104 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 180 (461)
++++|...+..+.+.. +.+...+..++..+...|++++|...++.+.. | +...+..+ ..+...|++++|+..++.
T Consensus 125 ~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 125 QYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 9999999999999874 55677888899999999999999999987642 3 34444444 347889999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHH----HHHHHHhC-CCC
Q 012539 181 MKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE----ALDVINKM-PMK 255 (461)
Q Consensus 181 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~~-~~~ 255 (461)
+......++......+..++...|+.++|...++.+.+. -+.+...+..+...|...|++++ |...|++. ...
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 877643344555555677888999999999999998753 23357788889999999999986 78888887 445
Q ss_pred CC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 256 PH-AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 256 p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
|+ ...+..+...+...|++++|...++++.+..|+++..+..+..+|.+.|++++|...++++.+..
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 65 45888888889999999999999999999999999999999999999999999999999988754
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7e-16 Score=167.27 Aligned_cols=312 Identities=13% Similarity=0.088 Sum_probs=183.4
Q ss_pred ccccCCchHHHHHHhcCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCC-----hhHHHH------------HH
Q 012539 2 YAELGCLGYCQKVFDGIHE--P-DVVCQTAMISACAKCGDVDLARKMFDEMPERD-----PIAWNA------------ML 61 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~------------li 61 (461)
+...|++++|+..|++.+. | |...+..|...|.+.|++++|+..|++..+.+ ...|.. +.
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 3467899999999988753 4 67889999999999999999999999865421 122322 23
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH-------
Q 012539 62 AGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMY------- 134 (461)
Q Consensus 62 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~------- 134 (461)
..+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.++++++.. +.+...+..+...|
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHH
Confidence 46778899999999999998864 2356677778889999999999999999998865 33444444444444
Q ss_pred -----------------------------------HhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhCCChHHHHH
Q 012539 135 -----------------------------------SKCGNMNKAMDFFWGMKE--R-NVYTWTSVIGGLAMNGAGEKSLE 176 (461)
Q Consensus 135 -----------------------------------~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~ 176 (461)
...|++++|++.|++..+ | +...+..+...|.+.|++++|+.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 334444444444444432 1 23344444445555555555555
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccCh---------hHHHHHHHHHHhcCCHHHHH
Q 012539 177 LFSLMKQAGVRP-NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL---------EHYGCLVDLYGRAGRLDEAL 246 (461)
Q Consensus 177 ~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---------~~~~~li~~~~~~g~~~~A~ 246 (461)
.|+++.+. .| +...+..+...+...++.++|...++.+... ...++. ..+..+...+...|+.++|.
T Consensus 517 ~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 517 LMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 55554432 12 2222222222333445555555555443211 000000 00112233344455555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 247 DVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 247 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
.+++.-+ ++...+..+...+...|++++|...++++.+..|+++.++..++.+|...|++++|.+.++...+
T Consensus 594 ~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 594 ALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 5555322 22334444555566666666666666666666666666666666666666666666666665543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.8e-16 Score=166.54 Aligned_cols=312 Identities=12% Similarity=0.022 Sum_probs=240.1
Q ss_pred ccccCCchHHHHHHhcCCC--CCH---HHHHH------------HHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIHE--PDV---VCQTA------------MISACAKCGDVDLARKMFDEMPE---RDPIAWNAML 61 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~~--~~~---~~~~~------------li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li 61 (461)
|.+.|++++|+..|++..+ |+. ..|.. +...+.+.|++++|+..|++..+ .+...+..+.
T Consensus 313 ~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg 392 (1157)
T PRK11447 313 YSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLG 392 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5678999999999988653 321 22222 23467789999999999998764 3566788889
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCcC-HHHHHH------------------------------------------HHHH
Q 012539 62 AGYAQCGKSREALHLFHLMQIHDVKLN-EVSMVS------------------------------------------VLSA 98 (461)
Q Consensus 62 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~------------------------------------------ll~~ 98 (461)
..+...|++++|++.|++..+.. |+ ...+.. +...
T Consensus 393 ~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~ 470 (1157)
T PRK11447 393 DVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEA 470 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999999999999999988743 33 222222 2233
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHH
Q 012539 99 CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSL 175 (461)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 175 (461)
+...|++++|.+.++++++.. |.+..++..+...|.+.|++++|...|+++.+ .+...+..+...+...++.++|+
T Consensus 471 ~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al 549 (1157)
T PRK11447 471 LENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAAL 549 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 446789999999999999875 45677788899999999999999999998753 35666666667778899999999
Q ss_pred HHHHHHHHcCCCCCHH---------HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHH
Q 012539 176 ELFSLMKQAGVRPNEV---------TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246 (461)
Q Consensus 176 ~~~~~m~~~g~~p~~~---------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 246 (461)
..++++......++.. .+..+...+...|+.++|..+++. .++++..+..+...|.+.|++++|+
T Consensus 550 ~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~ 623 (1157)
T PRK11447 550 AHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAAR 623 (1157)
T ss_pred HHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHH
Confidence 9998764332222211 233456677889999999998872 2345667788899999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 247 DVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 247 ~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
..|++. ...| +...+..+...+...|+.++|...++.+.+..|++...+..+..++...|++++|.++++++....
T Consensus 624 ~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 624 AAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 999888 4455 456888888899999999999999999999889888888889999999999999999999987654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.3e-15 Score=150.69 Aligned_cols=291 Identities=11% Similarity=0.004 Sum_probs=234.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccC
Q 012539 26 QTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLG 103 (461)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 103 (461)
+......|.+.|++++|+..|++.. .|+...|..+..+|...|++++|++.+.+.++.. +.+...+..+..++...|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 4567778899999999999999865 4678889999999999999999999999998853 225568888999999999
Q ss_pred CHHHHHHHHHHHHHcCC-----------------------------CCchHHHHHH------------------------
Q 012539 104 ALDQGRWAHVYIERNRL-----------------------------KMTVTLGTAL------------------------ 130 (461)
Q Consensus 104 ~~~~a~~~~~~~~~~~~-----------------------------~~~~~~~~~l------------------------ 130 (461)
++++|...+..+..... +++...+..+
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 99999876544322110 0100000000
Q ss_pred ------HHHH------HhcCCHHHHHHHHHhcCCC------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HH
Q 012539 131 ------VDMY------SKCGNMNKAMDFFWGMKER------NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EV 191 (461)
Q Consensus 131 ------i~~~------~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 191 (461)
+..+ ...+++++|.+.|+..... +...|+.+...+...|++++|+..|++..+. .|+ ..
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~ 366 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQ 366 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHH
Confidence 0000 1135788999999887632 4567888899999999999999999999874 565 56
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHH
Q 012539 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH-AGAWGALLNAC 268 (461)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~ 268 (461)
.|..+...+...|++++|...|+.+++. .| +...|..+...+...|++++|...|++. ...|+ ...+..+...+
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKL---NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 7888888899999999999999998753 44 5788999999999999999999999988 45564 45777788889
Q ss_pred HhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 269 RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 269 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
.+.|++++|...++++.+..|.++..|..+..++...|++++|.+.+++..+..
T Consensus 444 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999987653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-14 Score=148.82 Aligned_cols=316 Identities=11% Similarity=0.003 Sum_probs=233.9
Q ss_pred cccCCchHHHHHHhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 012539 3 AELGCLGYCQKVFDGIHE---PDVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHL 76 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~ 76 (461)
...|+.++|++++..... .+...+..+...+.+.|++++|..+|++..+ .+...+..++..+...|++++|+..
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 357889999999887542 3555688999999999999999999998542 3567788888999999999999999
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC----
Q 012539 77 FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---- 152 (461)
Q Consensus 77 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 152 (461)
+++..+.. +.+.. +..+..++...|+.++|...++++.+.. |.+..++..+..++.+.|..++|++.++....
T Consensus 106 l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~ 182 (765)
T PRK10049 106 AKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAE 182 (765)
T ss_pred HHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHH
Confidence 99998853 23445 7778888889999999999999999875 44555666677777777777766655553221
Q ss_pred -----------------------------------------------CCH-HHH----HHHHHHHHhCCChHHHHHHHHH
Q 012539 153 -----------------------------------------------RNV-YTW----TSVIGGLAMNGAGEKSLELFSL 180 (461)
Q Consensus 153 -----------------------------------------------~~~-~~~----~~li~~~~~~g~~~~A~~~~~~ 180 (461)
|+. ..+ ...+..+...|++++|+..|++
T Consensus 183 ~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ 262 (765)
T PRK10049 183 KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQR 262 (765)
T ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 110 000 0112234567889999999999
Q ss_pred HHHcCCC-CCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc--ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 012539 181 MKQAGVR-PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP--WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP 256 (461)
Q Consensus 181 m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 256 (461)
+.+.+.+ |+. .-..+..++...|++++|+.+|+.+.+.....+ .......+..++...|++++|..+++.+ ...|
T Consensus 263 ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P 341 (765)
T PRK10049 263 LKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSP 341 (765)
T ss_pred hhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCC
Confidence 9886532 332 222356688899999999999998765311111 1245666777888999999999998887 2222
Q ss_pred -------------CH---HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 257 -------------HA---GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 257 -------------~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
+. ..+..+...+...|+.++|+.+++++....|.++..+..++.++...|+.++|++.+++..+
T Consensus 342 ~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 342 PFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEV 421 (765)
T ss_pred ceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 21 23445566688899999999999999999999999999999999999999999999998876
Q ss_pred CC
Q 012539 321 KG 322 (461)
Q Consensus 321 ~g 322 (461)
..
T Consensus 422 l~ 423 (765)
T PRK10049 422 LE 423 (765)
T ss_pred hC
Confidence 44
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-14 Score=149.84 Aligned_cols=317 Identities=11% Similarity=-0.005 Sum_probs=236.9
Q ss_pred ccccCCchHHHHHHhcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIH---EPDVVCQTAMISACAKCGDVDLARKMFDEMPE--R-DPIAWNAMLAGYAQCGKSREALH 75 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~ 75 (461)
|.+.|++++|..++++.+ ..++..+..++..+...|++++|+..+++..+ | +.. |..+...+...|++++|+.
T Consensus 59 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~ 137 (765)
T PRK10049 59 YRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELR 137 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHH
Confidence 567899999999999864 24577788899999999999999999998754 2 556 8889999999999999999
Q ss_pred HHHHHHHCCCCc-CHHHHHHHHHHHhccCCHHH----------------------------------------------H
Q 012539 76 LFHLMQIHDVKL-NEVSMVSVLSACTHLGALDQ----------------------------------------------G 108 (461)
Q Consensus 76 ~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~----------------------------------------------a 108 (461)
.++++.+. .| +...+..+..++...+..+. |
T Consensus 138 ~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~A 215 (765)
T PRK10049 138 AMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRA 215 (765)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHH
Confidence 99999885 34 33444444555544444443 3
Q ss_pred HHHHHHHHHc-CCCCchH-HH----HHHHHHHHhcCCHHHHHHHHHhcCCCC---H-HHHHHHHHHHHhCCChHHHHHHH
Q 012539 109 RWAHVYIERN-RLKMTVT-LG----TALVDMYSKCGNMNKAMDFFWGMKERN---V-YTWTSVIGGLAMNGAGEKSLELF 178 (461)
Q Consensus 109 ~~~~~~~~~~-~~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~g~~~~A~~~~ 178 (461)
...++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+...+ + ..-..+...|...|++++|+..|
T Consensus 216 l~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l 295 (765)
T PRK10049 216 LAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSIL 295 (765)
T ss_pred HHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 4444444432 1122211 11 111234457799999999999988532 1 12223577899999999999999
Q ss_pred HHHHHcCCCC---CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcC----------CccC---hhHHHHHHHHHHhcCCH
Q 012539 179 SLMKQAGVRP---NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG----------IEPW---LEHYGCLVDLYGRAGRL 242 (461)
Q Consensus 179 ~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~ 242 (461)
+++.+..... .......+..++...|++++|..+++.+..... -.|+ ...+..+...+...|++
T Consensus 296 ~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~ 375 (765)
T PRK10049 296 TELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDL 375 (765)
T ss_pred HHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCH
Confidence 9987643111 124456667788999999999999999875310 0122 23456778889999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 243 DEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 243 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
++|++.++++ ...| +...+..+...+...|++++|+..++++.+.+|++...+..++..+...|++++|..+++++.+
T Consensus 376 ~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 376 PQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999998 3345 4558888888899999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 012539 321 K 321 (461)
Q Consensus 321 ~ 321 (461)
.
T Consensus 456 ~ 456 (765)
T PRK10049 456 R 456 (765)
T ss_pred h
Confidence 4
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-13 Score=143.11 Aligned_cols=311 Identities=11% Similarity=0.013 Sum_probs=201.1
Q ss_pred cccCCchHHHHHHhcCCC------CCHHHHHHHHHHHHHcCC---HHHHHHHHh-------------------------h
Q 012539 3 AELGCLGYCQKVFDGIHE------PDVVCQTAMISACAKCGD---VDLARKMFD-------------------------E 48 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~---~~~A~~~~~-------------------------~ 48 (461)
.+.|+.++|.++|..... .+...-+-|+..|.+.+. ..+|..+-. .
T Consensus 387 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (987)
T PRK09782 387 MQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVR 466 (987)
T ss_pred HHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHH
Confidence 356777788888777653 123345567777776665 233332211 1
Q ss_pred CCC---C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc
Q 012539 49 MPE---R--DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123 (461)
Q Consensus 49 m~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 123 (461)
... + +...|..+..++.. +++.+|+..|.+.... .|+......+..++...|++++|...++.+... +|+
T Consensus 467 al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~ 541 (987)
T PRK09782 467 LLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMS 541 (987)
T ss_pred hcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCC
Confidence 111 1 45566677766665 6777777777766653 355544444445556777888888777776554 333
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHH---HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012539 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY---TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200 (461)
Q Consensus 124 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 200 (461)
...+..+...+.+.|+.++|...|+...+.++. .+..+.......|++++|+..|++..+ ..|+...+..+..++
T Consensus 542 ~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l 619 (987)
T PRK09782 542 NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIY 619 (987)
T ss_pred cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHH
Confidence 344455667777778888888877766643322 222223333445788888888887776 356666777777777
Q ss_pred hhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 012539 201 CVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMG 277 (461)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a 277 (461)
.+.|+.++|...++.... ..| +...+..+...+...|++++|+..+++. ...| +...+..+..++...|++++|
T Consensus 620 ~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 620 RQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred HHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 778888888888877764 344 3566777777777788888888777776 3345 344677777777888888888
Q ss_pred HHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCC
Q 012539 278 ELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 278 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 323 (461)
...++++.++.|++..+.........+..+++.|.+.+++--..++
T Consensus 697 ~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 697 QHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 8888888888887777777777777777777777777766554444
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-13 Score=133.04 Aligned_cols=315 Identities=12% Similarity=0.105 Sum_probs=247.5
Q ss_pred ccccCCchHHHHHHhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHhhC---CCCChhHHHHHHHHHHHcCChHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIHE---PDVVCQTAMISACAKCGDVDLARKMFDEM---PERDPIAWNAMLAGYAQCGKSREALH 75 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~li~~~~~~g~~~~A~~ 75 (461)
|++ |++++|.+++..+.. .+...|..|...|-+.|+.+++...+-.. ...|...|-.+.....+.|.+++|.-
T Consensus 150 far-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 150 FAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 344 999999999998764 46788999999999999999998876543 34578899999999999999999999
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHH----HHHHHHhcCCHHHHHHHHHhcC
Q 012539 76 LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA----LVDMYSKCGNMNKAMDFFWGMK 151 (461)
Q Consensus 76 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~~~ 151 (461)
.|.+.++.. +++...+---...|-+.|+...|..-+.++.....+.|..-... .+..|...++-+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999875 44666666677888999999999999999998764434333332 4566777788888998888766
Q ss_pred C-----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH--------------------------HHHHHHH
Q 012539 152 E-----RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF--------------------------VSVLRGC 200 (461)
Q Consensus 152 ~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--------------------------~~ll~~~ 200 (461)
. -+...++.++..|.+...++.|......+......+|...+ --+.-++
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 4 24467889999999999999999999888762222221111 1122233
Q ss_pred hhcCcHHHHHHHHHHhhhhcCCcc--ChhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChH
Q 012539 201 CVVGLVEEGREHFDSMRREYGIEP--WLEHYGCLVDLYGRAGRLDEALDVINKM---PMKPHAGAWGALLNACRMYKNTE 275 (461)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~ 275 (461)
.+....+....+.....++ .+.| ++..|.-+.++|...|++.+|+.+|..+ +...+...|-.+..+|...|.++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 4444444444444444443 5334 5788999999999999999999999998 22345779999999999999999
Q ss_pred HHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHH
Q 012539 276 MGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319 (461)
Q Consensus 276 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (461)
+|++.|++++...|++..+-..|...|.+.|+.++|.+++..|.
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999876
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=140.14 Aligned_cols=256 Identities=13% Similarity=0.083 Sum_probs=107.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 012539 59 AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVS-MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137 (461)
Q Consensus 59 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 137 (461)
.+...+.+.|++++|++++++......+|+... |..+...+...++.+.|...++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 345667777888888888755444322343333 3344445566777888888888887765 3355566667776 678
Q ss_pred CCHHHHHHHHHhcCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhhcCcHHHHHHHHH
Q 012539 138 GNMNKAMDFFWGMKE--RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVLRGCCVVGLVEEGREHFD 214 (461)
Q Consensus 138 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 214 (461)
+++++|.+++...-+ ++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888776543 456677778888888899999999988876532 34566677777888888999999999999
Q ss_pred HhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC
Q 012539 215 SMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM--PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKN 291 (461)
Q Consensus 215 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 291 (461)
..++. .| +......++..+...|+.+++..+++.. ....|+..|..+..++...|+.++|...+++..+..|+|
T Consensus 171 ~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 88753 55 4777888888899999998877777666 113456678888889999999999999999999999999
Q ss_pred cchHHHHHHHHhhcCChhHHHHHHHHHH
Q 012539 292 HGAYVLLSNIYAESKNWDRVINVRQIMK 319 (461)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (461)
+.....++.++...|+.++|.+++++..
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999887653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-12 Score=135.24 Aligned_cols=309 Identities=8% Similarity=-0.004 Sum_probs=231.8
Q ss_pred CCchHHHHHHhcCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHhhCCC-C-----ChhHHHHHHHHHHHcCC---hHHH
Q 012539 6 GCLGYCQKVFDGIHE--P-DVVCQTAMISACAKCGDVDLARKMFDEMPE-R-----DPIAWNAMLAGYAQCGK---SREA 73 (461)
Q Consensus 6 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~-----~~~~~~~li~~~~~~g~---~~~A 73 (461)
+...+|.+....+.. | +...--.+.-...+.|+.++|.++|+.... + +...-+-|+..|.+.+. ..++
T Consensus 356 ~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred CchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence 344445555444432 2 445555555556789999999999998764 2 23345578888888876 4444
Q ss_pred HHH------------HH----------HHHH-CCC-Cc--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHH
Q 012539 74 LHL------------FH----------LMQI-HDV-KL--NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127 (461)
Q Consensus 74 ~~~------------~~----------~m~~-~~~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 127 (461)
+.+ .. .... .+. ++ +...|..+..++.. ++.++|...+....... |+....
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~ 512 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQH 512 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHH
Confidence 333 11 1111 111 23 56677777777766 78888999888887654 444444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcC
Q 012539 128 TALVDMYSKCGNMNKAMDFFWGMKE--RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVG 204 (461)
Q Consensus 128 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g 204 (461)
..+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...|++..+.. |+ ...+..+.......|
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~G 590 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPG 590 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCC
Confidence 4455566789999999999997763 455667788888999999999999999998853 44 333334444555679
Q ss_pred cHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHH
Q 012539 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAG-AWGALLNACRMYKNTEMGELASR 282 (461)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~ 282 (461)
++++|...++..++ ..|+...+..+..++.+.|++++|...+++. ...|+.. .++.+...+...|+.++|...++
T Consensus 591 r~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 591 QPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred CHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999874 4678889999999999999999999999988 5566554 67777778999999999999999
Q ss_pred HHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 283 KLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 283 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
++.+..|.++..+..+..++...|++++|...+++..+..
T Consensus 668 ~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 668 RAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999987644
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-12 Score=133.05 Aligned_cols=159 Identities=13% Similarity=0.065 Sum_probs=127.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcC----CccChhHHHHHHHHHHh
Q 012539 163 GGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG----IEPWLEHYGCLVDLYGR 238 (461)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~li~~~~~ 238 (461)
-++...|++.++++.|+.+...+.+....+-..+.++|...+..++|..++..+....+ ..++......|.-+|..
T Consensus 300 ~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld 379 (822)
T PRK14574 300 GALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE 379 (822)
T ss_pred HHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh
Confidence 35667888999999999999888665566788899999999999999999998865422 12344446788999999
Q ss_pred cCCHHHHHHHHHhCCC-C-------------C--CHH-HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHH
Q 012539 239 AGRLDEALDVINKMPM-K-------------P--HAG-AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301 (461)
Q Consensus 239 ~g~~~~A~~~~~~~~~-~-------------p--~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 301 (461)
.+++++|..+++++.. . | |-. ....++..+.-.|+..+|++.++++....|.|......+..+
T Consensus 380 ~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v 459 (822)
T PRK14574 380 SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASI 459 (822)
T ss_pred cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999988821 1 2 222 233345558889999999999999999999999999999999
Q ss_pred HhhcCChhHHHHHHHHHHhC
Q 012539 302 YAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~ 321 (461)
+...|...+|.+.++.....
T Consensus 460 ~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 460 YLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHhcCCHHHHHHHHHHHhhh
Confidence 99999999999999776554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.5e-12 Score=123.59 Aligned_cols=276 Identities=10% Similarity=0.041 Sum_probs=207.2
Q ss_pred HcCCHHHHHHHHhhCCCC--ChhHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHH--HHHHHHhccCCHHHHH
Q 012539 35 KCGDVDLARKMFDEMPER--DPIAWNAM-LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMV--SVLSACTHLGALDQGR 109 (461)
Q Consensus 35 ~~g~~~~A~~~~~~m~~~--~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~~~~~~a~ 109 (461)
-.|+++.|.+.+...++. ++..+..+ ..+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 369999999998876654 23333333 44558899999999999999874 55554333 3356778899999999
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CH--------HHHHHHHHHHHhCCChHHHHHHH
Q 012539 110 WAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER---NV--------YTWTSVIGGLAMNGAGEKSLELF 178 (461)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~--------~~~~~li~~~~~~g~~~~A~~~~ 178 (461)
..++.+.+.. |.++.+...+...|.+.|++++|.+++..+.+. +. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998876 667788888999999999999999999888743 11 23444444444455556666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 012539 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH 257 (461)
Q Consensus 179 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 257 (461)
+.+.+. .+.+......+..++...|+.++|..++....+. .|+.... ++.+....++.+++.+..++. ...|+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 665332 3456777888889999999999999999888752 4554322 233334558999999998877 44565
Q ss_pred HH-HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 258 AG-AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 258 ~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
.. ....+...|...+++++|...|+++.+..|++. .+..|..++.+.|+.++|.+++++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55 566777779999999999999999999998864 788999999999999999999987644
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-11 Score=126.89 Aligned_cols=189 Identities=10% Similarity=0.019 Sum_probs=151.6
Q ss_pred HHHhcCCHHHHHHHHHhcCCC----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhhc
Q 012539 133 MYSKCGNMNKAMDFFWGMKER----NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-----VRPNEVTFVSVLRGCCVV 203 (461)
Q Consensus 133 ~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~ 203 (461)
++.+.|++.++++.|+.+..+ ...+-.++.++|...+++++|+.+|+++.... ..++......|.-++...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 455667777777777777732 23456678899999999999999999996643 122344457888999999
Q ss_pred CcHHHHHHHHHHhhhhcC----------CccC---hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 012539 204 GLVEEGREHFDSMRREYG----------IEPW---LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNAC 268 (461)
Q Consensus 204 g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 268 (461)
+++++|..+++.+.+... -.|+ ...+..++..+...|++.+|++.++++ ...| |...+..+...+
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~ 460 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIY 460 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999976211 0122 234556788899999999999999998 3344 666888888999
Q ss_pred HhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 269 RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 269 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
...|.+.+|+..++.+..++|++..+...++.++...++|.+|..+.+...+.
T Consensus 461 ~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 461 LARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999877654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.4e-13 Score=127.43 Aligned_cols=277 Identities=14% Similarity=0.048 Sum_probs=219.5
Q ss_pred CCHHHHHHHHhhCCCC--Ch-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHhccCCHHHHHHH
Q 012539 37 GDVDLARKMFDEMPER--DP-IAWNAMLAGYAQCGKSREALHLFHLMQIHDV--KLNEVSMVSVLSACTHLGALDQGRWA 111 (461)
Q Consensus 37 g~~~~A~~~~~~m~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~t~~~ll~~~~~~~~~~~a~~~ 111 (461)
=+..+|..+|...++. |+ .....+..+|...+++++|.++|+.+.+... .-+...|.++|-.+-+. -+...
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 3568999999997643 33 3455688999999999999999999987421 12667888888665332 22222
Q ss_pred HH-HHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 012539 112 HV-YIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER---NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187 (461)
Q Consensus 112 ~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 187 (461)
+. .+++. -+..+.+|.++.++|.-.++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+.... +.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 22 23333 2567889999999999999999999999998864 557889888889999999999999998865 44
Q ss_pred CC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 012539 188 PN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGA 263 (461)
Q Consensus 188 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 263 (461)
|. --.|..+...|.+.++++.|+-.|+.+. .+.|. ......+...+-+.|+.++|+++++++ ...| |+..--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 43 3456667788999999999999999886 56774 566677888899999999999999998 3333 4444445
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCC
Q 012539 264 LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 264 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 323 (461)
....+...+++++|...++++.++-|++...|..+...|.+.|+.+.|..-|.-+.+...
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 556677889999999999999999999999999999999999999999998887766443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-11 Score=119.00 Aligned_cols=277 Identities=12% Similarity=-0.012 Sum_probs=217.9
Q ss_pred cCCchHHHHHHhcCCCC--CHHHHHHH-HHHHHHcCCHHHHHHHHhhCCCCChh--HH--HHHHHHHHHcCChHHHHHHH
Q 012539 5 LGCLGYCQKVFDGIHEP--DVVCQTAM-ISACAKCGDVDLARKMFDEMPERDPI--AW--NAMLAGYAQCGKSREALHLF 77 (461)
Q Consensus 5 ~g~~~~A~~~~~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~--~~--~~li~~~~~~g~~~~A~~~~ 77 (461)
.|+++.|++......+. ++..+-.+ ..+..+.|+++.|...|.++.+.++. .. -.....+...|++++|+..+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 59999999999887642 34444333 44457999999999999998764322 22 23367889999999999999
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchH-------HHHHHHHHHHhcCCHHHHHHHHHhc
Q 012539 78 HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT-------LGTALVDMYSKCGNMNKAMDFFWGM 150 (461)
Q Consensus 78 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~~ 150 (461)
+++.+.. +-+......+...+.+.|+++++..++..+.+....++.. +|..++.......+.+...++++.+
T Consensus 177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 9998865 2366788888899999999999999999999987553321 3334444445556677788888887
Q ss_pred CC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChh
Q 012539 151 KE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE 227 (461)
Q Consensus 151 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 227 (461)
++ .++.....+...+...|+.++|.+++++..+. .||.... ++.+....++.+++.+..+...+. .+-|+.
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~ 329 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPL 329 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHH
Confidence 63 47889999999999999999999999999873 5555221 333444569999999999998764 344577
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcc
Q 012539 228 HYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE 288 (461)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 288 (461)
...++...+.+.|++++|.+.|+.. ...|+...+..+...+...|+.++|..++++...+.
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 8889999999999999999999998 667999999999999999999999999999987653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-11 Score=117.83 Aligned_cols=279 Identities=10% Similarity=-0.043 Sum_probs=121.7
Q ss_pred HcCCHHHHHHHHhhCCCC--C-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHH
Q 012539 35 KCGDVDLARKMFDEMPER--D-PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWA 111 (461)
Q Consensus 35 ~~g~~~~A~~~~~~m~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 111 (461)
..|+++.|.+.+.+..+. + ...+-....++.+.|++++|.+.+.+..+....+...........+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 345555555555544332 1 1222233344445555555555555554422111111222234444455555555555
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CHHHHH----HHHHHHHhCCChHHHHHHHHHHHHc
Q 012539 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER---NVYTWT----SVIGGLAMNGAGEKSLELFSLMKQA 184 (461)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~ 184 (461)
++.+.+.. |.++.+...+...|.+.|++++|.+.+....+. +...+. ....++...+..+++.+.+..+...
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 55555543 334444455555555555555555555554421 211111 0011112222222233333333332
Q ss_pred CC---CCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhH-HHHHHHH--HHhcCCHHHHHHHHHhC-CCCCC
Q 012539 185 GV---RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEH-YGCLVDL--YGRAGRLDEALDVINKM-PMKPH 257 (461)
Q Consensus 185 g~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~--~~~~g~~~~A~~~~~~~-~~~p~ 257 (461)
.. +.+...+..+...+...|+.++|.+++++..+. .|+... ...++.. ....++.+.+.+.+++. ...|+
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 11 114444455555555555555555555555432 222211 0001111 12234445555555443 22232
Q ss_pred H---HHHHHHHHHHHhcCChHHHHHHHHH--HhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHH
Q 012539 258 A---GAWGALLNACRMYKNTEMGELASRK--LVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318 (461)
Q Consensus 258 ~---~~~~~ll~~~~~~~~~~~a~~~~~~--~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 318 (461)
. ....++...+.+.|++++|.+.|+. ..+..|++. .+..+...+.+.|+.++|.+++++-
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 2334445555666666666666663 334444432 3456666666666666666666553
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-12 Score=116.10 Aligned_cols=302 Identities=14% Similarity=0.153 Sum_probs=219.5
Q ss_pred ccccCCchHHHHHHhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC----------------CChh--------
Q 012539 2 YAELGCLGYCQKVFDGIH--EPDVVCQTAMISACAKCGDVDLARKMFDEMPE----------------RDPI-------- 55 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------------~~~~-------- 55 (461)
+.+.|++++|+.-|+... .||..+--.|+-.+..-|+-++..+.|.+|.. |+..
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 467899999999998865 47777655566666667777887777777641 0000
Q ss_pred -------------------------------------HHH------------------HHHHHHHHcCChHHHHHHHHHH
Q 012539 56 -------------------------------------AWN------------------AMLAGYAQCGKSREALHLFHLM 80 (461)
Q Consensus 56 -------------------------------------~~~------------------~li~~~~~~g~~~~A~~~~~~m 80 (461)
-|. .-...|.++|+++.|+++++-+
T Consensus 366 d~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~ 445 (840)
T KOG2003|consen 366 DHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF 445 (840)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence 010 0112467889999999988877
Q ss_pred HHCCCCcCHHHHHHH--HHH----------------------------------HhccCCHHHHHHHHHHHHHcCCCCch
Q 012539 81 QIHDVKLNEVSMVSV--LSA----------------------------------CTHLGALDQGRWAHVYIERNRLKMTV 124 (461)
Q Consensus 81 ~~~~~~p~~~t~~~l--l~~----------------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~ 124 (461)
.+.+-+.-...-+.+ +.. ....|++++|...+.+.+...-.-..
T Consensus 446 ~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e 525 (840)
T KOG2003|consen 446 EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE 525 (840)
T ss_pred HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence 654322211111111 111 11236677777777777665433333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 012539 125 TLGTALVDMYSKCGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201 (461)
Q Consensus 125 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 201 (461)
..|| +.-.+-+.|++++|+..|-.+. ..++...-.+.+.|-...+..+|++++.+.... ++.|......|...|-
T Consensus 526 alfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlyd 603 (840)
T KOG2003|consen 526 ALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYD 603 (840)
T ss_pred HHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhh
Confidence 4444 4556677888888888887665 456777777888888888999999998887664 5556788888999999
Q ss_pred hcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH-HHhcCChHHHHH
Q 012539 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGAWGALLNA-CRMYKNTEMGEL 279 (461)
Q Consensus 202 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~-~~~~~~~~~a~~ 279 (461)
+.|+-.+|.+.+-.--+ -++.+.++...|...|....-+++|...|++. -++|+..-|..|+.. +++.|+++.|..
T Consensus 604 qegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d 681 (840)
T KOG2003|consen 604 QEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFD 681 (840)
T ss_pred cccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHH
Confidence 99999999998765432 34457889999999999999999999999998 568999999999988 578899999999
Q ss_pred HHHHHhhccCCCcchHHHHHHHHhhcCC
Q 012539 280 ASRKLVELETKNHGAYVLLSNIYAESKN 307 (461)
Q Consensus 280 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 307 (461)
+++...+..|.+......|++.+...|.
T Consensus 682 ~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 682 LYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999999999999999988775
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.7e-14 Score=129.40 Aligned_cols=251 Identities=14% Similarity=0.158 Sum_probs=102.9
Q ss_pred HHHHHHHHcCCHHHHHHHHhhC-C----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcc
Q 012539 28 AMISACAKCGDVDLARKMFDEM-P----ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHL 102 (461)
Q Consensus 28 ~li~~~~~~g~~~~A~~~~~~m-~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 102 (461)
.+...+.+.|++++|++++++. . ..|+..|..+.......+++++|+..++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 5577788889999999998542 2 235667777777778888899999999988876532 44555555555 678
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhCCChHHHHHH
Q 012539 103 GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-----ERNVYTWTSVIGGLAMNGAGEKSLEL 177 (461)
Q Consensus 103 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~ 177 (461)
+++++|.++.....+.. +++..+..++..+.+.|+++++..+++... +.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888887766543 455566778888888999999988888754 24677888888889999999999999
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 012539 178 FSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMK 255 (461)
Q Consensus 178 ~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 255 (461)
|++..+. .|+ ......++..+...|+.+++..++....+. .+.++..+..+..+|...|+.++|+..|++. ...
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 9998884 554 666778888888899999988888887653 2556777888899999999999999999887 334
Q ss_pred C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 012539 256 P-HAGAWGALLNACRMYKNTEMGELASRKLVE 286 (461)
Q Consensus 256 p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 286 (461)
| |+.....+..++...|+.++|..+.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 5 566777777889999999999988887654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.2e-11 Score=109.32 Aligned_cols=252 Identities=15% Similarity=0.114 Sum_probs=172.3
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC--CchHHHHHHHHHHHhcCCH
Q 012539 63 GYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK--MTVTLGTALVDMYSKCGNM 140 (461)
Q Consensus 63 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~ 140 (461)
++-...+.++++.-.+.....|+.-+...-+....+.-...++++|+.+|+.+.+..+- .|..+|+.++-.--.+.++
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 33333444555555555555544333333333333334455555666666555554210 1333443332111111111
Q ss_pred HH-HHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhh
Q 012539 141 NK-AMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 141 ~~-A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (461)
.- |..++ .+.+--+.|...+.+-|+..++.++|+..|++..+. .|. ...|+.+..-|....+...|.+-++.+++
T Consensus 316 s~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 316 SYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 11 11111 111112334445566677788999999999999884 454 56677777889999999999999998874
Q ss_pred hcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchH
Q 012539 219 EYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAY 295 (461)
Q Consensus 219 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 295 (461)
+.| |-..|-.|.++|.-.+...-|+-.|++. ..+| |...|.+|..+|.+.++.++|++.|.++...+..+...|
T Consensus 393 ---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 393 ---INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred ---cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 445 6788999999999999999999999998 5666 677999999999999999999999999999887777899
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 296 VLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 296 ~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
..|+.+|.+.++.++|.+.+++-.+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999988765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=4e-11 Score=115.85 Aligned_cols=278 Identities=10% Similarity=-0.024 Sum_probs=130.5
Q ss_pred cCCchHHHHHHhcCCC--CCH-HHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC--hhHHHHHHHHHHHcCChHHHHHHH
Q 012539 5 LGCLGYCQKVFDGIHE--PDV-VCQTAMISACAKCGDVDLARKMFDEMPE--RD--PIAWNAMLAGYAQCGKSREALHLF 77 (461)
Q Consensus 5 ~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~--~~~~~~li~~~~~~g~~~~A~~~~ 77 (461)
.|+++.|.+.+.+..+ |++ ..+-....++.+.|+++.|...|++..+ |+ ....-.....+.+.|++++|++.+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4556666665555432 332 2222333445555666666666655322 11 122223355555566666666666
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH-------HhcCCHHHHHHHHHhc
Q 012539 78 HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMY-------SKCGNMNKAMDFFWGM 150 (461)
Q Consensus 78 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-------~~~g~~~~A~~~~~~~ 150 (461)
+++.+.. +-+...+..+...+...|+++++.+.+..+.+.+..+.......-...+ ......+...+.++..
T Consensus 177 ~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~ 255 (409)
T TIGR00540 177 DKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ 255 (409)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC
Confidence 6665543 1133455555555666666666666666666554332221111001111 1111222333334433
Q ss_pred CC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH--HHHH-HHHHhhcCcHHHHHHHHHHhhhhcCCcc
Q 012539 151 KE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT--FVSV-LRGCCVVGLVEEGREHFDSMRREYGIEP 224 (461)
Q Consensus 151 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~p 224 (461)
++ .+...+..++..+...|+.++|.+++++..+. .||... +..+ .......++.+.+.+.++...+...-.|
T Consensus 256 p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~ 333 (409)
T TIGR00540 256 PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKP 333 (409)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCCh
Confidence 32 25555555666666666666666666665553 222221 0111 1111223455555555555543211111
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 012539 225 WLEHYGCLVDLYGRAGRLDEALDVINK--M-PMKPHAGAWGALLNACRMYKNTEMGELASRKLV 285 (461)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 285 (461)
+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++..
T Consensus 334 ~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 334 KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 113444555556666666666666662 2 334555555555555666666666666666543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.7e-12 Score=120.53 Aligned_cols=274 Identities=13% Similarity=0.040 Sum_probs=218.0
Q ss_pred chHHHHHHhcCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHhhCCCC------ChhHHHHHHHHHHHcCChHHHHHHH-
Q 012539 8 LGYCQKVFDGIHE--P-DVVCQTAMISACAKCGDVDLARKMFDEMPER------DPIAWNAMLAGYAQCGKSREALHLF- 77 (461)
Q Consensus 8 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~- 77 (461)
..+|...|.+.+. + +..+-..+..+|...+++++|.++|+.+.+. +...|.+.+...-+ +-++..+
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~La 410 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLA 410 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHH
Confidence 3577888888543 3 3456677889999999999999999988753 67788888765432 2233333
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHH
Q 012539 78 HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYT 157 (461)
Q Consensus 78 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 157 (461)
+.+.... +-.+.+|-.+.+.|.-.++.+.|++.|++.++.. +....+|+.+..-+....++|.|...|+.....|+..
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh 488 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH 488 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh
Confidence 3344332 4577899999999999999999999999999864 4478999999999999999999999999988776665
Q ss_pred HH---HHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHH
Q 012539 158 WT---SVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCL 232 (461)
Q Consensus 158 ~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 232 (461)
|| -|...|.+.++++.|.-.|++..+ +.|. .+....+...+.+.|+.++|+++++++. -+.| |+..--..
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~---~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAI---HLDPKNPLCKYHR 563 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH---hcCCCCchhHHHH
Confidence 55 566789999999999999999988 4554 5666677778889999999999999886 4455 45555556
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCc
Q 012539 233 VDLYGRAGRLDEALDVINKM-PMKPHAG-AWGALLNACRMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
+..+...+++++|+..++++ ...|+.. ++..+...|.+.|+.+.|..-|--+.+++|+-.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 77888999999999999999 5567665 566666679999999999999999999999853
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-10 Score=105.82 Aligned_cols=304 Identities=11% Similarity=0.100 Sum_probs=207.9
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCH
Q 012539 14 VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER----DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE 89 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 89 (461)
++-.....+..+|..||.+.++--..+.|.+++++-... +..+||.+|.+-.- ....++..+|....++||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCch
Confidence 444445567789999999999999999999999987643 67789988876433 2337888999999999999
Q ss_pred HHHHHHHHHHhccCCHHHH----HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHH-HHHHHHhcCC------------
Q 012539 90 VSMVSVLSACTHLGALDQG----RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK-AMDFFWGMKE------------ 152 (461)
Q Consensus 90 ~t~~~ll~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~------------ 152 (461)
.|+|+++++.++.|+++.+ .+++.+|.+.|++|...+|..+|..+.+-++..+ |..+..++..
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 9999999999999987654 5778888999999999999999999988887655 4444444431
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC
Q 012539 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG----VRPN---EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW 225 (461)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 225 (461)
.|...|...++.|....+.+-|.++-.-+.... +.|+ .+-|..+..+.++....+.-...|+.|.-. -.-|+
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~-~y~p~ 432 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS-AYFPH 432 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-eecCC
Confidence 255567777777778888888877766554311 3343 223556777778888888888899888764 56677
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcC-Ch--------------------HHHHHHH
Q 012539 226 LEHYGCLVDLYGRAGRLDEALDVINKM---PMKPHAGAWGALLNACRMYK-NT--------------------EMGELAS 281 (461)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~~-~~--------------------~~a~~~~ 281 (461)
..+...++.+..-.|.++-.-+++.++ +-.-+...-.-++..+++.+ +. +..+..-
T Consensus 433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~ 512 (625)
T KOG4422|consen 433 SQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQP 512 (625)
T ss_pred chhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 777788888888888877777776665 10011111111111112111 11 0001111
Q ss_pred HHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCC
Q 012539 282 RKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 282 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 323 (461)
.++.+.+ -.+...+..+..+.+.|..++|.+++..+.+.+-
T Consensus 513 ~R~r~~~-~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~ 553 (625)
T KOG4422|consen 513 IRQRAQD-WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHN 553 (625)
T ss_pred HHHHhcc-CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCC
Confidence 1111111 1234566777888999999999999999865543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.4e-11 Score=108.81 Aligned_cols=212 Identities=15% Similarity=0.126 Sum_probs=160.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHH
Q 012539 103 GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFS 179 (461)
Q Consensus 103 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 179 (461)
|+.-.+.+-++..++.. +.+...|--+..+|....+-++-.+.|+.... .|..+|..-...+.-.+++++|..-|+
T Consensus 340 g~~~~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CCchhhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555543 22333355667778888888888888877653 356677777777777888999999999
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 012539 180 LMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH 257 (461)
Q Consensus 180 ~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 257 (461)
+.+. +.|. ...|.-+.-+..+.+.++++...|++.++ .++.-++.|+.....+...+++++|.+.|+.. .+.|+
T Consensus 419 Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 419 KAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9887 4554 66676676677789999999999999987 45556889999999999999999999999887 33443
Q ss_pred ---------HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 258 ---------AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 258 ---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
+.+--+++.. .=.+++..|..+++++.+++|....+|..|...-.+.|+.++|+++|++-..
T Consensus 495 ~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2222222222 2238999999999999999999999999999999999999999999997643
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.4e-11 Score=105.26 Aligned_cols=198 Identities=11% Similarity=0.016 Sum_probs=158.4
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012539 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198 (461)
Q Consensus 122 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 198 (461)
.....+..+...|...|++++|...|++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456677788888899999999998887653 356778888888999999999999999887753 334566777788
Q ss_pred HHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 012539 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEM 276 (461)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 276 (461)
.+...|++++|...+..+............+..+...+...|++++|...+++. ...| +...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 888899999999999988753222223556777888899999999999999887 3334 35577788888999999999
Q ss_pred HHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 277 GELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 277 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
|...++++.+..|.++..+..++..+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999988888878888889999999999999999887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-10 Score=104.40 Aligned_cols=240 Identities=12% Similarity=0.152 Sum_probs=137.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 012539 53 DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132 (461)
Q Consensus 53 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 132 (461)
...++.+||.+.++--..+.|.+++++-.....+.+..+||.++.+-. +..++.+..+|....+.||..|+|+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 456677777777777777777777777766666677777777765532 2233666667777777777777777777
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHH-HHH
Q 012539 133 MYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE-GRE 211 (461)
Q Consensus 133 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~ 211 (461)
+.++.|+++.|.+ .|++++.+|++.|+.|...+|..+|..+.+.++..+ +..
T Consensus 282 c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 282 CAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred HHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 7777776666543 345556666666666666666666665555544422 333
Q ss_pred HHHHhhhhc---CCcc----ChhHHHHHHHHHHhcCCHHHHHHHHHhC--C-----CCCC---HHHHHHHHHHHHhcCCh
Q 012539 212 HFDSMRREY---GIEP----WLEHYGCLVDLYGRAGRLDEALDVINKM--P-----MKPH---AGAWGALLNACRMYKNT 274 (461)
Q Consensus 212 ~~~~~~~~~---~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~--~-----~~p~---~~~~~~ll~~~~~~~~~ 274 (461)
++.++.... .++| +...+..-++.+.+..+.+-|.++-.-. + +.|+ ...|..+....++....
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 333332110 1222 2334445555555666655555544332 0 1122 12445555555555556
Q ss_pred HHHHHHHHHHhh-ccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCC
Q 012539 275 EMGELASRKLVE-LETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 275 ~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 323 (461)
+.....|+.+.- ..-+++.+...++++..-.|.|+-..+++..++..|-
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 666666655542 2222344666666677777777777777777776663
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-10 Score=100.29 Aligned_cols=288 Identities=14% Similarity=0.132 Sum_probs=172.2
Q ss_pred cCCHHHHHHHHhhCCCCChhHH---HHHHHHHHHcCChHHHHHHHHHHHHCCCCcCH------HHHHHHHHHHhccCCHH
Q 012539 36 CGDVDLARKMFDEMPERDPIAW---NAMLAGYAQCGKSREALHLFHLMQIHDVKLNE------VSMVSVLSACTHLGALD 106 (461)
Q Consensus 36 ~g~~~~A~~~~~~m~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~t~~~ll~~~~~~~~~~ 106 (461)
..+.++|.++|-+|.+-|+.++ -+|.+.|-+.|..+.|+.+-+.+.++ ||. ...-.+..-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 4567777777777766554443 35667777777777777777766653 322 23444556667777777
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCH--------HHHHHHHHHHHhCCChHHHHHHH
Q 012539 107 QGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNV--------YTWTSVIGGLAMNGAGEKSLELF 178 (461)
Q Consensus 107 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~~~ 178 (461)
.|+.+|..+...+ ..-....--|+..|-+..+|++|+++-+++.+-+. ..|.-|...+....+.+.|..++
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 7777777776644 22334445577777777777777777665543222 23444455555566777777777
Q ss_pred HHHHHcCCCCCHHHH-HHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 012539 179 SLMKQAGVRPNEVTF-VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP 256 (461)
Q Consensus 179 ~~m~~~g~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 256 (461)
.+..+. .|+.+-- ..+.......|+++.|.+.++.+.+. +..--..+...|..+|...|+.++...++.++ ...+
T Consensus 204 ~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 204 KKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 777664 3332222 23444566677777777777777653 22222456666777777777777777777665 3344
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHh---hcCChhHHHHHHHHHHhCCCccCCcccE
Q 012539 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA---ESKNWDRVINVRQIMKAKGVKKLPGCSV 331 (461)
Q Consensus 257 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 331 (461)
....-..+-.......-.+.|.....+-....|.-. .+..|+.... .-|.+.+....++.|....++..|.+..
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC 357 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-GFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRC 357 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH-HHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCcee
Confidence 444444444444444445666666655555566532 3444444332 3355777777888887766666555443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-11 Score=119.99 Aligned_cols=268 Identities=14% Similarity=0.109 Sum_probs=195.3
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 012539 75 HLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN 154 (461)
Q Consensus 75 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 154 (461)
.++-.+...|+.|+.+||..++.-|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667888999999999999999999999999998 9999998888889999999999999999988776 788
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHH
Q 012539 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234 (461)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 234 (461)
..+|+.|..+|.++|+... |+...+ -...+...++..|.-..-..++..+.-..+.-||. ...+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHH
Confidence 8999999999999999865 333322 12234445566666666666665543222344443 34566
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHH
Q 012539 235 LYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKN-TEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVIN 313 (461)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 313 (461)
...-.|-++.+++++..+|...-......++.-+..... ++.-....+...+ ..++.+|..++.+-..+|+.+-|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e--~~~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE--APTSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc--CCChHHHHHHHHHHHhcCchhhHHH
Confidence 667788889999999888643221122223544444333 3444444444444 3456799999999999999999999
Q ss_pred HHHHHHhCCCccCCcccEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccc
Q 012539 314 VRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIE 382 (461)
Q Consensus 314 ~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~ 382 (461)
++.+|++.|++..+.+.|..+-+. +....++...+.|++.|+.||..+....+.
T Consensus 226 ll~emke~gfpir~HyFwpLl~g~---------------~~~q~~e~vlrgmqe~gv~p~seT~adyvi 279 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLGI---------------NAAQVFEFVLRGMQEKGVQPGSETQADYVI 279 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhcC---------------ccchHHHHHHHHHHHhcCCCCcchhHHHHH
Confidence 999999999999999999765431 112345568888999999999877554333
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.1e-10 Score=104.36 Aligned_cols=262 Identities=13% Similarity=0.023 Sum_probs=209.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 012539 53 DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132 (461)
Q Consensus 53 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 132 (461)
++...-.-..-+...+++.+.+++++...+.. ++....+..-|..+...|+..+-..+=.++++.- |....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 34445555667778899999999999998864 4566666666778888888777777767777763 667788888999
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHH
Q 012539 133 MYSKCGNMNKAMDFFWGMKERN---VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209 (461)
Q Consensus 133 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 209 (461)
-|.-.|+..+|++.|.+...-| ...|-....+|+-.|..++|+..|...-+. ++-...-+.-+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 9999999999999999766433 478999999999999999999999988663 222222233345567889999999
Q ss_pred HHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCChHHHHH
Q 012539 210 REHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKMP--------MKP-HAGAWGALLNACRMYKNTEMGEL 279 (461)
Q Consensus 210 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~ll~~~~~~~~~~~a~~ 279 (461)
.++|.... ++-| |+...+-+.-.....+.+.+|..+|+..- .++ -..+++.|..+|++.+.+++|+.
T Consensus 400 e~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99999875 6666 56777777777778889999999987761 112 34478888999999999999999
Q ss_pred HHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 280 ASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 280 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
.+++.+.+.|.+..+|.+++-+|...|+++.|.+.|.+...
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999987643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.7e-10 Score=100.60 Aligned_cols=287 Identities=14% Similarity=0.139 Sum_probs=208.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCH--HHHHHHHHH
Q 012539 21 PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE--VSMVSVLSA 98 (461)
Q Consensus 21 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~ 98 (461)
.|+..+-...-.+-+.|....|+..|......-+..|.+-+....-.-+.+.+ ..... |...|. ..=-.+..+
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~----~~l~~-~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEIL----SILVV-GLPSDMHWMKKFFLKKA 236 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHH----HHHHh-cCcccchHHHHHHHHHH
Confidence 45444444445556778888888888776654344443333222212222222 22221 222111 112234567
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC------CHHHHHHHHHHHHhCCChH
Q 012539 99 CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER------NVYTWTSVIGGLAMNGAGE 172 (461)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~ 172 (461)
+....+.+++.+-.......|++.+...-+....+.-...++++|+.+|+++.+. |..+|+.++-. ++.+-.
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~sk 314 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhHH
Confidence 7777788999999999999998888888777777888899999999999999864 55677776533 333221
Q ss_pred ---HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcCCHHHHHHH
Q 012539 173 ---KSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAGRLDEALDV 248 (461)
Q Consensus 173 ---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 248 (461)
-|..+++ -...+| .|.-.+.+.|+-.++.++|..+|++.+ .+.|. ...|+.+..-|....+...|.+-
T Consensus 315 Ls~LA~~v~~---idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRAL---kLNp~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 315 LSYLAQNVSN---IDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRAL---KLNPKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHHHHHHHH---hccCCc--cceeeehhHHHHHHhHHHHHHHHHHHH---hcCcchhHHHHHhhHHHHHhcccHHHHHH
Confidence 1222221 122444 466667788888999999999999987 45664 67889999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 249 INKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 249 ~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
++.. .+.| |-..|..|.++|...+...-|.-.|+++.+..|.|+..|.+|..+|.+.++.++|++.|+.....|
T Consensus 387 YRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 387 YRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 9988 5555 667999999999999999999999999999999999999999999999999999999999877654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-09 Score=100.16 Aligned_cols=296 Identities=13% Similarity=0.096 Sum_probs=194.3
Q ss_pred HHHHHHcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHH
Q 012539 30 ISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQ 107 (461)
Q Consensus 30 i~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 107 (461)
+.+=-..|++..|.++|++-. +|+...|++.|..=.+-...+.|..++++.+- +.|+..+|.--...-.+.|....
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHH
Confidence 333334455555555555422 45666666666666666666666666666654 34666666555555555666666
Q ss_pred HHHHHHHHHHcCCC--CchHHHHHHHHHHHhcCCHHHHHHHHHhcC----------------------------------
Q 012539 108 GRWAHVYIERNRLK--MTVTLGTALVDMYSKCGNMNKAMDFFWGMK---------------------------------- 151 (461)
Q Consensus 108 a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---------------------------------- 151 (461)
+..++..++..--. .+...+.+....-.++..++.|.-+|+-..
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 66666655542101 112223333333333444444444443211
Q ss_pred ----------C---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---hhcCcHHH
Q 012539 152 ----------E---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE-------VTFVSVLRGC---CVVGLVEE 208 (461)
Q Consensus 152 ----------~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~---~~~g~~~~ 208 (461)
. -|-.+|--.+..-...|+.+...++|++.... ++|-. ..|.-+=-+| ....+++.
T Consensus 306 KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 306 KRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 1 14567777777777889999999999999875 56632 2233222232 24678899
Q ss_pred HHHHHHHhhhhcCCccChhHHHHHHHHHH----hcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 012539 209 GREHFDSMRREYGIEPWLEHYGCLVDLYG----RAGRLDEALDVINKM-PMKPHAGAWGALLNACRMYKNTEMGELASRK 283 (461)
Q Consensus 209 a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 283 (461)
+.++|+..++ -++....|+.-+--+|+ ++.++..|.+++... |.-|...+|...|..-.+.++++....++++
T Consensus 385 tr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 385 TRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999988874 34445667766666555 678899999998776 7779999999999998999999999999999
Q ss_pred HhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCccCCccc
Q 012539 284 LVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCS 330 (461)
Q Consensus 284 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s 330 (461)
.++..|.+..+|.-.+..-...|+++.|..+|....++.....|..-
T Consensus 463 fle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpell 509 (677)
T KOG1915|consen 463 FLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELL 509 (677)
T ss_pred HHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHH
Confidence 99999999888888888888889999999999888776554444433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.7e-10 Score=112.63 Aligned_cols=261 Identities=11% Similarity=-0.046 Sum_probs=186.8
Q ss_pred ChhHHHHHHHHHHH--c---CChHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHh---------ccCCHHHHHHHHHHHHH
Q 012539 53 DPIAWNAMLAGYAQ--C---GKSREALHLFHLMQIHDVKLN-EVSMVSVLSACT---------HLGALDQGRWAHVYIER 117 (461)
Q Consensus 53 ~~~~~~~li~~~~~--~---g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 117 (461)
+...|...+.+-.. . +..++|+.+|++..+. .|+ ...|..+..++. ..+++++|...++++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 55666666665322 1 3467999999999885 454 445555544433 23458899999999998
Q ss_pred cCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-HHH
Q 012539 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--R-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE-VTF 193 (461)
Q Consensus 118 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~ 193 (461)
.. |.+...+..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+. ..+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 76 55778888899999999999999999998763 3 5678899999999999999999999999885 4543 233
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHh
Q 012539 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAG-AWGALLNACRM 270 (461)
Q Consensus 194 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~ 270 (461)
..++..+...|++++|...++++.+. ..| ++..+..+..+|...|++++|...+.++ +..|+.. .++.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 33444566689999999999988653 234 4556778888999999999999999987 4455544 44555555677
Q ss_pred cCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCC
Q 012539 271 YKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 271 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 323 (461)
.| +.+...++.+.+.....+..+..+...|.-.|+-+.+... +++.+.|-
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 77 4777777777654322222222366667777777777666 77776653
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-10 Score=112.69 Aligned_cols=212 Identities=11% Similarity=0.074 Sum_probs=127.0
Q ss_pred ccccCCchHHHHHHhcCCC--CCH--HHHHHHHHHHHHcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcC----Ch
Q 012539 2 YAELGCLGYCQKVFDGIHE--PDV--VCQTAMISACAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCG----KS 70 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g----~~ 70 (461)
|-..|++++|.+.|..... +|. ..+--|..+|.+.|+++.|...|+...+. +..+...|...|+..+ ..
T Consensus 317 ~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~ 396 (1018)
T KOG2002|consen 317 YHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKR 396 (1018)
T ss_pred HHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHH
Confidence 5678999999999877653 443 33445778899999999999999987643 4566667777777665 45
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHH----HHcCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 012539 71 REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYI----ERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146 (461)
Q Consensus 71 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 146 (461)
+.|..++.+..+.- +.|...|..+...+....-+.. ..++..+ ...+.++.+.+.|.+...+...|++++|...
T Consensus 397 d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~ 474 (1018)
T KOG2002|consen 397 DKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEH 474 (1018)
T ss_pred HHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHH
Confidence 66666666666543 3466677666666654433332 5444433 3445556677778888888888888888888
Q ss_pred HHhcCCC-------C------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHH
Q 012539 147 FWGMKER-------N------VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREH 212 (461)
Q Consensus 147 ~~~~~~~-------~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 212 (461)
|+..... | +.+-..+...+-..++++.|.++|...... -|. ...|.-++......++..+|...
T Consensus 475 f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~ 552 (1018)
T KOG2002|consen 475 FKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLL 552 (1018)
T ss_pred HHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHH
Confidence 8765421 1 112223444444555566666666665543 233 22233332222223444555555
Q ss_pred HHHhh
Q 012539 213 FDSMR 217 (461)
Q Consensus 213 ~~~~~ 217 (461)
++...
T Consensus 553 lk~~l 557 (1018)
T KOG2002|consen 553 LKDAL 557 (1018)
T ss_pred HHHHH
Confidence 55444
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.3e-12 Score=83.11 Aligned_cols=50 Identities=26% Similarity=0.509 Sum_probs=47.1
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhc
Q 012539 52 RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101 (461)
Q Consensus 52 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 101 (461)
||+++||+||.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.1e-12 Score=82.65 Aligned_cols=50 Identities=32% Similarity=0.649 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 012539 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202 (461)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 202 (461)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999998874
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.7e-09 Score=92.71 Aligned_cols=275 Identities=12% Similarity=0.066 Sum_probs=181.0
Q ss_pred cCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHH
Q 012539 36 CGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH 112 (461)
Q Consensus 36 ~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 112 (461)
.|+|..|+++..+-.+. .+..|..-+.+--+.|+.+.|-..+.+.-+..-.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 67888888887764432 344555555666677888888888877776433445555666666677778888888888
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-----------HHHHHHHHHHHHhCCChHHHHHHHHHH
Q 012539 113 VYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN-----------VYTWTSVIGGLAMNGAGEKSLELFSLM 181 (461)
Q Consensus 113 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m 181 (461)
.++.+.+ +.++.+......+|.+.|++.....+...+.+.. ..+|+.++.-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7777766 4556666777888888888888888888777531 235666666555555554444455544
Q ss_pred HHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHH----HHHhCCCCCC
Q 012539 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD----VINKMPMKPH 257 (461)
Q Consensus 182 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~----~~~~~~~~p~ 257 (461)
-+. .+-+...-.+++.-+.+.|+.++|.++..+..++ +..|+.. .+ -...+-++...-.+ .....|..|
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p- 328 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---RL-IPRLRPGDPEPLIKAAEKWLKQHPEDP- 328 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---HH-HhhcCCCCchHHHHHHHHHHHhCCCCh-
Confidence 332 3444455556666777788888888888777765 5555411 11 12233444433333 333334333
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 258 AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 258 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
..+.+|...|.+++.+.+|...|+...+..|.. .+|..+..++.+.|+..+|.+++++-..
T Consensus 329 -~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 -LLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred -hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 577777777888888888888888877777654 5888888888888888888888877664
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.4e-10 Score=97.69 Aligned_cols=193 Identities=11% Similarity=0.045 Sum_probs=118.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 133 (461)
...+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+.+..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4567777777777888888888877776643 2245566666677777777777777777777654 3344555666677
Q ss_pred HHhcCCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHH
Q 012539 134 YSKCGNMNKAMDFFWGMKE-----RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208 (461)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 208 (461)
|...|++++|.+.|++... .....+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 7777777777777766543 123455556666666666666666666665532 2234455555556666666666
Q ss_pred HHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012539 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251 (461)
Q Consensus 209 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (461)
|...+++.... .+.++..+..++..+...|+.++|..+.+.
T Consensus 188 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 188 ARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 66666665442 122344444555555555666666555444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.9e-09 Score=95.18 Aligned_cols=251 Identities=13% Similarity=0.049 Sum_probs=171.5
Q ss_pred cCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 012539 67 CGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146 (461)
Q Consensus 67 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 146 (461)
.|+|.+|.++..+-.+.+-. ....|.....+....|+.+.+..++.++.+....++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 57788888777776665533 23445555666777778888888877777764466666667777777777887777776
Q ss_pred HHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhhcCcHHHHHHHHHHh
Q 012539 147 FWGMK---ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE-------VTFVSVLRGCCVVGLVEEGREHFDSM 216 (461)
Q Consensus 147 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (461)
.++.. .+++........+|.+.|++.+...++.+|.+.|.-.|. .++..++.-....+..+.-...++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 66544 456777777778888888888888888888777655442 35677777666666666666666666
Q ss_pred hhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchH
Q 012539 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAY 295 (461)
Q Consensus 217 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 295 (461)
-. ...-++..-.+++.-+.++|+.++|.+++++. +..-|.. -..+-.+.+.++.+.-++..++..+..|+++..+
T Consensus 256 pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~ 331 (400)
T COG3071 256 PR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLL 331 (400)
T ss_pred cH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHH
Confidence 44 34445566667777777888888888777666 2222333 1222335667777777777777777777777777
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 296 VLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 296 ~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
.+|...|.+.+.|.+|.+.|+...+.+
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~~~ 358 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALKLR 358 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 888888888888888888887665544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-09 Score=105.61 Aligned_cols=232 Identities=14% Similarity=0.125 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----C-CCCchH-HHHHHHHHHHhcCCHHHHHHHHHhcCC-------C-
Q 012539 89 EVSMVSVLSACTHLGALDQGRWAHVYIERN-----R-LKMTVT-LGTALVDMYSKCGNMNKAMDFFWGMKE-------R- 153 (461)
Q Consensus 89 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~-------~- 153 (461)
..|...+...|...|+++.|...+.+.++. | ..|.+. ..+.+...|...+++.+|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346667888999999999999999988764 2 123332 334577889999999999999988762 1
Q ss_pred ---CHHHHHHHHHHHHhCCChHHHHHHHHHHHH-----cCCC-CC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcC--
Q 012539 154 ---NVYTWTSVIGGLAMNGAGEKSLELFSLMKQ-----AGVR-PN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYG-- 221 (461)
Q Consensus 154 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-- 221 (461)
-..+++.|..+|.+.|++++|...++...+ .|.. |. ..-++.+...|...+.+++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 235788888899999999998888877643 1222 22 23356677788899999999999987766443
Q ss_pred CccC----hhHHHHHHHHHHhcCCHHHHHHHHHhC-------CC--CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 012539 222 IEPW----LEHYGCLVDLYGRAGRLDEALDVINKM-------PM--KPH-AGAWGALLNACRMYKNTEMGELASRKLVEL 287 (461)
Q Consensus 222 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~--~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 287 (461)
..++ ..+++.|...|...|++++|.++++++ .. .+. ....+.|...|.+.+++++|.++|.+...+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 467999999999999999999999887 11 222 236777888899999999999999887643
Q ss_pred ----cCC---CcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 288 ----ETK---NHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 288 ----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
+|. ...+|..|+.+|...|++++|.++.+....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344 345889999999999999999999988753
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4e-09 Score=92.43 Aligned_cols=217 Identities=13% Similarity=0.116 Sum_probs=90.7
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc---hHHHHHHHHHHHhcCCHHHHHH
Q 012539 69 KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT---VTLGTALVDMYSKCGNMNKAMD 145 (461)
Q Consensus 69 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~ 145 (461)
++++|.++|.+|.+.. +-+..+-.++.+.+-+.|..|.|+.+|+-+.++.--+. ....-.|..-|...|-+|.|+.
T Consensus 50 Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 50 QPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred CcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 4445555555554421 11223334444444445555555555544443211000 1112234444444555555555
Q ss_pred HHHhcCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhhcCcHHHHHHHHHHhhh
Q 012539 146 FFWGMKERN---VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN----EVTFVSVLRGCCVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 146 ~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (461)
+|..+.+.+ ..+...|+..|-+..+|++|++.-+++...+-.+. ...|--|...+....+++.|..++.+..+
T Consensus 129 ~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 129 IFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ 208 (389)
T ss_pred HHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 554444321 12334444445555555555555544444333322 12233344444444444555554444432
Q ss_pred hcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHhhccC
Q 012539 219 EYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAG--AWGALLNACRMYKNTEMGELASRKLVELET 289 (461)
Q Consensus 219 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 289 (461)
. .| .+..--.+.+.+...|+++.|.+.++.+ .-.|+.. +...|..+|...|+.++....+.++.+..+
T Consensus 209 a---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 209 A---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred h---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 1 22 1222333444444455555555444444 1122221 344444445555555555554444444433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-09 Score=98.04 Aligned_cols=316 Identities=11% Similarity=0.050 Sum_probs=171.4
Q ss_pred ccccCCchHHHHHHhcCCC--C--C----HHHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChH
Q 012539 2 YAELGCLGYCQKVFDGIHE--P--D----VVCQTAMISACAKCGDVDLARKMFDEMPE--RDPIAWNAMLAGYAQCGKSR 71 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~~--~--~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~ 71 (461)
|.+...+.+|++.++-.+. | + +...+.+.-.+.+.|+++.|+.-|+.+.+ ||..+-..|+-++..-|+.+
T Consensus 247 ~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~e 326 (840)
T KOG2003|consen 247 HFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAE 326 (840)
T ss_pred eeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHH
Confidence 4566778888888765442 2 1 23455555567899999999999998653 56665555666666789999
Q ss_pred HHHHHHHHHHHCCCC------------cCHHHHHHHHH-----HHhccC--CHHHHHHHHHHHHHcCCCCchH-------
Q 012539 72 EALHLFHLMQIHDVK------------LNEVSMVSVLS-----ACTHLG--ALDQGRWAHVYIERNRLKMTVT------- 125 (461)
Q Consensus 72 ~A~~~~~~m~~~~~~------------p~~~t~~~ll~-----~~~~~~--~~~~a~~~~~~~~~~~~~~~~~------- 125 (461)
+..+.|.+|..--.. |+....+..+. -..+.. +.++++-.-..++.--+.|+-.
T Consensus 327 kmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcl 406 (840)
T KOG2003|consen 327 KMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCL 406 (840)
T ss_pred HHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHH
Confidence 999999999653222 23222222221 111100 1111111111111111111100
Q ss_pred --------------HHHHHHHHHHhcCCHHHHHHHHHhc-----------------------------------------
Q 012539 126 --------------LGTALVDMYSKCGNMNKAMDFFWGM----------------------------------------- 150 (461)
Q Consensus 126 --------------~~~~li~~~~~~g~~~~A~~~~~~~----------------------------------------- 150 (461)
.--.-..-|.+.|+++.|.++++-.
T Consensus 407 e~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d 486 (840)
T KOG2003|consen 407 ESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID 486 (840)
T ss_pred HHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc
Confidence 0000112344555555555554433
Q ss_pred ------------------------------CCCCHHHHHHHH---HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012539 151 ------------------------------KERNVYTWTSVI---GGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197 (461)
Q Consensus 151 ------------------------------~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 197 (461)
...|...-.+|. -.+-..|+.++|++.|-++..- +.-+......+.
T Consensus 487 ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qia 565 (840)
T KOG2003|consen 487 RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIA 565 (840)
T ss_pred ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHH
Confidence 333322211111 1233344444444444444332 122334444445
Q ss_pred HHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChH
Q 012539 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMK-PHAGAWGALLNACRMYKNTE 275 (461)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~ 275 (461)
+.|....+..+|.+++..... -++-|+...+.|.+.|-+.|+-..|.+..-+- ..- .+..+..-|..-|....-.+
T Consensus 566 niye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~e 643 (840)
T KOG2003|consen 566 NIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSE 643 (840)
T ss_pred HHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHH
Confidence 555555555566665544421 23335677777777777777777777764433 222 24445444555566666778
Q ss_pred HHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 276 MGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 276 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
.++.+|+++.-+.|.-..-...+..++.+.|++.+|.++++...+
T Consensus 644 kai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 644 KAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 888899888888887553334455666789999999999998854
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-09 Score=106.49 Aligned_cols=333 Identities=15% Similarity=0.110 Sum_probs=172.0
Q ss_pred cccCCchHHHHHHhcCCCCCHHHHHHHHHHHH------HcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHH
Q 012539 3 AELGCLGYCQKVFDGIHEPDVVCQTAMISACA------KCGDVDLARKMFDEMP---ERDPIAWNAMLAGYAQCGKSREA 73 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~------~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A 73 (461)
.++|+.+.|+..|....+-|+...++++.... ....+..+..++...- ..|++..+.|.+.|.-.|++..+
T Consensus 210 ~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v 289 (1018)
T KOG2002|consen 210 WKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERV 289 (1018)
T ss_pred HhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHH
Confidence 56777888888887776655555554444322 1223445555555432 23677777777777777777777
Q ss_pred HHHHHHHHHCCCC--cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 012539 74 LHLFHLMQIHDVK--LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK 151 (461)
Q Consensus 74 ~~~~~~m~~~~~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 151 (461)
..+...+...... .-...|..+.+++-..|++++|...|.+..+......+..+--|..+|.+.|+++.|...|+.+.
T Consensus 290 ~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~ 369 (1018)
T KOG2002|consen 290 WHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVL 369 (1018)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHH
Confidence 7777666653211 12234666777777777777777777766665422223333456777777777777777777665
Q ss_pred C--C-CHHHHHHHHHHHHhCC----ChHHHHHHHHHHHHc-------------------------------------CCC
Q 012539 152 E--R-NVYTWTSVIGGLAMNG----AGEKSLELFSLMKQA-------------------------------------GVR 187 (461)
Q Consensus 152 ~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~-------------------------------------g~~ 187 (461)
. | +..+...|...|+..+ ..+.|..++.+..+. +..
T Consensus 370 k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ 449 (1018)
T KOG2002|consen 370 KQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQ 449 (1018)
T ss_pred HhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCC
Confidence 3 2 3344444444454443 234444444443332 222
Q ss_pred CCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcC--CccCh------hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 012539 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG--IEPWL------EHYGCLVDLYGRAGRLDEALDVINKM-PMKPHA 258 (461)
Q Consensus 188 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 258 (461)
+.....|.+...+...|++++|...|........ ..++. .+--.+...+-..++.+.|.+.|..+ ...|.-
T Consensus 450 ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~Y 529 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGY 529 (1018)
T ss_pred CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchh
Confidence 3333444444444444444444444444432100 01111 11112333333344444444444444 222332
Q ss_pred H-HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCccCCcccEEEeC
Q 012539 259 G-AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVD 335 (461)
Q Consensus 259 ~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~ 335 (461)
+ .|--++......++..+|...++.+...+..++.++..+.+.|.....|..|.+-|..+.+.-...+..+|.|.++
T Consensus 530 Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLG 607 (1018)
T KOG2002|consen 530 IDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALG 607 (1018)
T ss_pred HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhh
Confidence 2 2222222233345556666666666666666666666666666666666666665555554433333334444443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-08 Score=97.48 Aligned_cols=294 Identities=13% Similarity=0.053 Sum_probs=188.6
Q ss_pred HHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHH
Q 012539 32 ACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG 108 (461)
Q Consensus 32 ~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 108 (461)
.+-..|++..|..++.+.-+ .+...|-+-+..-..+.++++|..+|.+... ..|+...|.--+..---+++.++|
T Consensus 593 e~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHH
Confidence 33345555555555554332 1344565666666666666666666666554 344555554444444445666666
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 012539 109 RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--R-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185 (461)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 185 (461)
.++++..++. ++.-...|..+...+-+.++++.|...|..-.+ | .+..|-.|...=-+.|..-.|..+|++....+
T Consensus 671 ~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 671 LRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 6666666654 244455566666666666666666666655442 2 34566666666666666677777777665543
Q ss_pred CCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 012539 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265 (461)
Q Consensus 186 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll 265 (461)
+-|...|...|..=.+.|+.+.|..+..+.++ .++.+...|.--|.+..+.++-.++.+.+++- +.|+.+.-++.
T Consensus 750 -Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia 824 (913)
T KOG0495|consen 750 -PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIA 824 (913)
T ss_pred -CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHH
Confidence 33456666666666677777777776666655 33445556666666666666655555555544 35666666777
Q ss_pred HHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCccCCcccEEEeC
Q 012539 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVD 335 (461)
Q Consensus 266 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~ 335 (461)
..+....+++.|...|.+..+.+|++..+|..+...+.+.|.-++-.+++...... .|.-|..|..+.
T Consensus 825 ~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 825 KLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 77888889999999999999999999999999999999999999999999887653 344456665443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-08 Score=96.87 Aligned_cols=312 Identities=11% Similarity=-0.001 Sum_probs=177.4
Q ss_pred ccccCCchHHHHHHhcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC--------CC-----------------
Q 012539 2 YAELGCLGYCQKVFDGI---HEPDVVCQTAMISACAKCGDVDLARKMFDEMPE--------RD----------------- 53 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~----------------- 53 (461)
|++..-++.|++++++. +..+..+|.+-...--..|+.+...++.++-.. -+
T Consensus 416 larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 34444556666666553 234666666555555566666666666554210 00
Q ss_pred --------------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHH
Q 012539 54 --------------------PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHV 113 (461)
Q Consensus 54 --------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 113 (461)
-.+|+.-...|.+.+.++-|..+|...++. .+-+...|..+...--..|..+....+++
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 113333334444444445555555544442 11233344444444444455555555555
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 012539 114 YIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190 (461)
Q Consensus 114 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 190 (461)
++...- +.....|.....-+-..|++..|+.++...-+ .+...|-+-+..-..+.+++.|..+|.+... ..|+.
T Consensus 575 kav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTe 651 (913)
T KOG0495|consen 575 KAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTE 651 (913)
T ss_pred HHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcc
Confidence 555543 33334444445555556666666666655542 2445666666666667777777777776655 34555
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 012539 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH-AGAWGALLNA 267 (461)
Q Consensus 191 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~ 267 (461)
..|..-+..-.-.++.++|.+++++.++. -|+ ...|..+...+-+.++++.|...|..- ..-|+ +..|-.|...
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~---fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS---FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh---CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 55555555555566777777777666643 233 455666666677777777777666554 22343 3366666666
Q ss_pred HHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 268 CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 268 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
--+.|.+-.|..++++..-.+|++...|...+++-.+.|+.+.|..+..+..+
T Consensus 729 eEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666777777777777777777777777777777777777777766655544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-09 Score=109.67 Aligned_cols=257 Identities=9% Similarity=-0.031 Sum_probs=182.4
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHH---------cCChHHHHHHHHHHHHC
Q 012539 21 PDVVCQTAMISACAK-----CGDVDLARKMFDEMPER---DPIAWNAMLAGYAQ---------CGKSREALHLFHLMQIH 83 (461)
Q Consensus 21 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~ 83 (461)
.+...|...+.+-.. .+++++|..+|++..+. +...|..+..+|.. .+++++|...+++..+.
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 345556555554321 23468999999987754 34567766665542 24478999999999986
Q ss_pred CCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-HHHHHH
Q 012539 84 DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--RN-VYTWTS 160 (461)
Q Consensus 84 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~ 160 (461)
+ +-+..++..+...+...|++++|...++++++.+ |.+...+..+...+...|++++|...|++..+ |+ ...+..
T Consensus 334 d-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 334 D-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 4 2366788888888899999999999999999986 55677788899999999999999999999874 33 233444
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHh
Q 012539 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGR 238 (461)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 238 (461)
++..+...|++++|+..++++.... .|+ ...+..+..++...|+.++|...+..+... .|+ ....+.+...|..
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhc
Confidence 5556777899999999999987653 354 445666777888999999999999887542 443 4445566667777
Q ss_pred cCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcc
Q 012539 239 AGRLDEALDVINKM----PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE 288 (461)
Q Consensus 239 ~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 288 (461)
.| ++|...++.+ ...+....+..++ +.-+|+.+.+... +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLV--LVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHH--HHHHhhhHHHHHH-HHhhccc
Confidence 77 4666666655 3334444443333 4556777776666 6666543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.7e-10 Score=97.24 Aligned_cols=225 Identities=12% Similarity=0.020 Sum_probs=163.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhCC
Q 012539 93 VSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--R-NVYTWTSVIGGLAMNG 169 (461)
Q Consensus 93 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g 169 (461)
+.+..+|.++|.+.+|...++..++.. |-+.+|..|-..|.+..+.+.|+.+|.+-.+ | |+....-+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 455667777777777777777766653 3444555677777777777777777776653 2 4444445556666677
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHH
Q 012539 170 AGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVI 249 (461)
Q Consensus 170 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 249 (461)
+.++|.++|+...+.. +.+......+...|.-.++.+-|+.++++++.- |+. +++.|..+.-+|.-.+++|-++.-|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 7777777777776642 234445555556666677778888888777653 543 5667777777777777888777777
Q ss_pred HhC---CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 250 NKM---PMKPH--AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 250 ~~~---~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
++. ...|+ ..+|..+-......||...|.+.|+.....+|++..+++.|...-.+.|++++|..++...+...
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 665 22343 34788888888899999999999999999999999999999999999999999999999876643
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.9e-08 Score=97.33 Aligned_cols=287 Identities=14% Similarity=0.085 Sum_probs=212.9
Q ss_pred HHHcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHH
Q 012539 33 CAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR 109 (461)
Q Consensus 33 ~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 109 (461)
..-.|++++|.+++.++.+. +...|.+|...|-+.|+.++++..+-..-..+ +-|..-|..+.....+.|+++.|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 33449999999999998754 57799999999999999999999876655543 336788999999999999999999
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCH----HHH----HHHHHHHHhCCChHHHHHHHHHH
Q 012539 110 WAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNV----YTW----TSVIGGLAMNGAGEKSLELFSLM 181 (461)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~----~~li~~~~~~g~~~~A~~~~~~m 181 (461)
-.+.++++.. |++...+--=..+|-+.|+...|...|.++.+.++ .-. ..++..|..+++.+.|++.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999987 55555555578899999999999999998875322 222 23455677788889999999988
Q ss_pred HHcC-CCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhh--------------------------cCCccChhHHHHHH-
Q 012539 182 KQAG-VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE--------------------------YGIEPWLEHYGCLV- 233 (461)
Q Consensus 182 ~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------------------------~~~~p~~~~~~~li- 233 (461)
...+ -..+...++.++..+.....++.|......+... .++.++..++..++
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 6622 2334556677777788888888887777666430 01223333311122
Q ss_pred HHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCC-CcchHHHHHHHHhhcCChh
Q 012539 234 DLYGRAGRLDEALDVINKM---PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETK-NHGAYVLLSNIYAESKNWD 309 (461)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~ 309 (461)
-.-.+.+...+++.-+..- ...-+...+.-+..++...|++.+|..++..+....+. +...|..++.+|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 2223445555665544333 22234557888889999999999999999999987654 5678999999999999999
Q ss_pred HHHHHHHHHHhC
Q 012539 310 RVINVRQIMKAK 321 (461)
Q Consensus 310 ~a~~~~~~m~~~ 321 (461)
+|.+.++.....
T Consensus 467 ~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 467 EAIEFYEKVLIL 478 (895)
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5e-09 Score=100.91 Aligned_cols=231 Identities=16% Similarity=0.109 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC-----C-CCcCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHc-----C--CC
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIH-----D-VKLNEVS-MVSVLSACTHLGALDQGRWAHVYIERN-----R--LK 121 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~ 121 (461)
+...|...|...|+++.|..+++..++. | ..|...+ .+.+...|...+++++|..+|..+... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4445889999999999999999887663 2 1344443 334667888999999999999988752 2 12
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCC----------CCH-HHHHHHHHHHHhCCChHHHHHHHHHHHHc---CCC
Q 012539 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKE----------RNV-YTWTSVIGGLAMNGAGEKSLELFSLMKQA---GVR 187 (461)
Q Consensus 122 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~ 187 (461)
.-..+++.|...|.+.|++++|...+++..+ +.+ ..++.++..+...+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2345667778889999999999888876542 222 34677788899999999999999876542 123
Q ss_pred CC----HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhc----C-CccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-----
Q 012539 188 PN----EVTFVSVLRGCCVVGLVEEGREHFDSMRREY----G-IEPW-LEHYGCLVDLYGRAGRLDEALDVINKM----- 252 (461)
Q Consensus 188 p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~----- 252 (461)
++ ..+++.|...|...|++++|.++|+.++... + ..+. ...++.|...|.+.++..+|.++|.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 33 4578899999999999999999999887643 1 1222 456778888999999999888888775
Q ss_pred ---CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 012539 253 ---PMKPHAG-AWGALLNACRMYKNTEMGELASRKLVE 286 (461)
Q Consensus 253 ---~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~ 286 (461)
+..|+.. +|..|...|...|+++.|.++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3346655 899999999999999999999998873
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-09 Score=95.13 Aligned_cols=229 Identities=11% Similarity=0.038 Sum_probs=195.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 012539 58 NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137 (461)
Q Consensus 58 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 137 (461)
+.|.++|.+.|.+.+|...|+.-+.. .|-+.||..+-.+|.+..+...|..++.+-+.. .|-++....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 67999999999999999999988875 677788888999999999999999999988876 366666667788899999
Q ss_pred CCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHH
Q 012539 138 GNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD 214 (461)
Q Consensus 138 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 214 (461)
++.++|.++|+...+ .++.+...+..+|.-.++++-|+..|+++.+.|+. +...|..+.-+|.-.++++-++.-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998874 36777777888899999999999999999999866 66788888888889999999999998
Q ss_pred HhhhhcCCccC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCC
Q 012539 215 SMRREYGIEPW--LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETK 290 (461)
Q Consensus 215 ~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 290 (461)
+.... --.|+ ..+|-.+.......|++.-|.+.|+-. ...| +...++.|.-.-.+.|+++.|..++..+....|.
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 88753 33344 467888888888899999999999877 2233 4558899888889999999999999999998887
Q ss_pred C
Q 012539 291 N 291 (461)
Q Consensus 291 ~ 291 (461)
-
T Consensus 462 m 462 (478)
T KOG1129|consen 462 M 462 (478)
T ss_pred c
Confidence 3
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.1e-09 Score=95.50 Aligned_cols=146 Identities=14% Similarity=-0.018 Sum_probs=74.1
Q ss_pred CChHHHHHHHHHHHHCC-CCcC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHH
Q 012539 68 GKSREALHLFHLMQIHD-VKLN--EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144 (461)
Q Consensus 68 g~~~~A~~~~~~m~~~~-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 144 (461)
+..+.++.-+.+++... ..|+ ...|..+...+...|+.++|...+.+.++.. +.+...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44555566555555421 1121 2335555555556666666666666665543 334555566666666666666666
Q ss_pred HHHHhcCC--C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHh
Q 012539 145 DFFWGMKE--R-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM 216 (461)
Q Consensus 145 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (461)
..|+...+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|...
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 66665542 2 3445555555556666666666666665552 333221111111222344555665555443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.2e-08 Score=91.20 Aligned_cols=89 Identities=12% Similarity=0.042 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhh
Q 012539 127 GTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCV 202 (461)
Q Consensus 127 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~ 202 (461)
+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|++.|++..+ +.|+ ..++..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 44444455555555555555544432 2344555555555555555555555555544 2332 3344444444445
Q ss_pred cCcHHHHHHHHHHhh
Q 012539 203 VGLVEEGREHFDSMR 217 (461)
Q Consensus 203 ~g~~~~a~~~~~~~~ 217 (461)
.|++++|.+.|+...
T Consensus 145 ~g~~~eA~~~~~~al 159 (296)
T PRK11189 145 GGRYELAQDDLLAFY 159 (296)
T ss_pred CCCHHHHHHHHHHHH
Confidence 555555555555444
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.4e-08 Score=88.69 Aligned_cols=267 Identities=9% Similarity=-0.014 Sum_probs=169.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 012539 20 EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWN---AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL 96 (461)
Q Consensus 20 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 96 (461)
.-|+....++.+.+...|+.+.|+..|++...-|+.+.. .-.-.+.+.|++++...+...+.... +-+...|..-+
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 345666666777777777777777777764433332211 12223345666666666665555421 22333444444
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC--C-CCHHHHHHHHHHHHhCCChHH
Q 012539 97 SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK--E-RNVYTWTSVIGGLAMNGAGEK 173 (461)
Q Consensus 97 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~ 173 (461)
...-..++++.|..+-++.++.. +.+...+-.-...+...|+.++|.-.|+... . -+...|.-|+.+|...|++.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 44455566677776666666654 3344455444566677788888887777654 3 367788888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHH-HHHh-hcCcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 012539 174 SLELFSLMKQAGVRPNEVTFVSVL-RGCC-VVGLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAGRLDEALDVIN 250 (461)
Q Consensus 174 A~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 250 (461)
|.-+-+...+. ++.+..+...+. ..|. ....-++|..+++..+ .+.|+ ....+.+...+...|..+++..+++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 87777665543 344455554442 2332 2344567777777654 45665 4556667777788888888888887
Q ss_pred hC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCc
Q 012539 251 KM-PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 251 ~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
+. ...||....+.|...++..+.+++|...|..+..++|++.
T Consensus 463 ~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 463 KHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 76 5567888888888888888888888888888888888875
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.2e-07 Score=84.63 Aligned_cols=322 Identities=10% Similarity=0.102 Sum_probs=233.2
Q ss_pred ccCCchHHHHHHhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHhhC--CCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 012539 4 ELGCLGYCQKVFDGIH--EPDVVCQTAMISACAKCGDVDLARKMFDEM--PERDPIAWNAMLAGYAQCGKSREALHLFHL 79 (461)
Q Consensus 4 ~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 79 (461)
..|++..|+++|..-. +|+...|++.|+.=.+...++.|..++++. ..|++.+|---...=-++|....|..+|..
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3588999999999864 699999999999999999999999999984 468888888888887888888888888887
Q ss_pred HHHCCCCcCHHHHHHHHHHH----hccCCHHHHHHHHHHHHHcC------------------------------------
Q 012539 80 MQIHDVKLNEVSMVSVLSAC----THLGALDQGRWAHVYIERNR------------------------------------ 119 (461)
Q Consensus 80 m~~~~~~p~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~~------------------------------------ 119 (461)
..+. --|...-..+..++ .+...++.|.-++...+..-
T Consensus 233 Aie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 233 AIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 7652 11222222222222 23333444444443332210
Q ss_pred -------CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCH---HHHHHHHHHH--------HhCCChHHHHHHHH
Q 012539 120 -------LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--RNV---YTWTSVIGGL--------AMNGAGEKSLELFS 179 (461)
Q Consensus 120 -------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~li~~~--------~~~g~~~~A~~~~~ 179 (461)
-+.|-.+|--.+..-...|+.+...++|++... |.. ..|.--|-.. ....+.+.+.++|+
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 133444555566666777889999999987762 211 2343333221 24678999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHH----hhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 012539 180 LMKQAGVRPNEVTFVSVLRGC----CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PM 254 (461)
Q Consensus 180 ~m~~~g~~p~~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 254 (461)
...+. ++-..+||..+=-.| .++.++..|.+++...+ |.-|...++...|+.=.+.++++.+..++++. ..
T Consensus 391 ~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 391 ACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 99884 444577777654333 35789999999999886 88999999999999999999999999999988 55
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC--cchHHHHHHHHhhcCChhHHHHHHHHHHhCCCccCCcccE
Q 012539 255 KP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKN--HGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSV 331 (461)
Q Consensus 255 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 331 (461)
.| +..+|......-...|+.+.|..+|+.++.....+ ...|-..|.--...|.++.|..+++++.+..-.. .+|
T Consensus 467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~---kvW 543 (677)
T KOG1915|consen 467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV---KVW 543 (677)
T ss_pred ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc---hHH
Confidence 56 56699999888899999999999999998654322 2356667777778999999999999998764321 256
Q ss_pred EEe
Q 012539 332 IEV 334 (461)
Q Consensus 332 i~~ 334 (461)
|.+
T Consensus 544 isF 546 (677)
T KOG1915|consen 544 ISF 546 (677)
T ss_pred HhH
Confidence 543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.12 E-value=6e-08 Score=89.68 Aligned_cols=288 Identities=15% Similarity=0.106 Sum_probs=203.1
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHhccC
Q 012539 28 AMISACAKCGDVDLARKMFDEMPE--RD-PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEV-SMVSVLSACTHLG 103 (461)
Q Consensus 28 ~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~ 103 (461)
...+-|.+.|.+++|++.+....+ || ++.|.....+|...|+++++.+--.+.++ +.|+.+ .+.--.+++..+|
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhc
Confidence 344557789999999999998763 56 88899999999999999999998888877 567654 6777778889999
Q ss_pred CHHHHHHHHH------------------HHH------------H-cC--CCCchHHHHHHHHHHH---------hc----
Q 012539 104 ALDQGRWAHV------------------YIE------------R-NR--LKMTVTLGTALVDMYS---------KC---- 137 (461)
Q Consensus 104 ~~~~a~~~~~------------------~~~------------~-~~--~~~~~~~~~~li~~~~---------~~---- 137 (461)
+++++..-.. +.+ + .+ +-|+.....+....+- +.
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksD 277 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSD 277 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccch
Confidence 9988752111 000 1 11 1122222222211110 00
Q ss_pred ------------C---CHHHHHHHHHhcC-----CC-----CH------HHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 012539 138 ------------G---NMNKAMDFFWGMK-----ER-----NV------YTWTSVIGGLAMNGAGEKSLELFSLMKQAGV 186 (461)
Q Consensus 138 ------------g---~~~~A~~~~~~~~-----~~-----~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 186 (461)
+ .+.+|...+.+-. .+ |. .+...-..-+.-.|+.-.|.+-|+.......
T Consensus 278 a~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~ 357 (606)
T KOG0547|consen 278 AALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP 357 (606)
T ss_pred hhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc
Confidence 0 1222222211110 00 11 1111111224457888999999999988644
Q ss_pred CCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHH
Q 012539 187 RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH-AGAWGA 263 (461)
Q Consensus 187 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ 263 (461)
.++. .|--+..+|....+.++.+..|+... .+.| ++.+|..-..++.-.+++++|..-|++. .+.|. ...|-.
T Consensus 358 ~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~---~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQ 433 (606)
T KOG0547|consen 358 AFNS-LYIKRAAAYADENQSEKMWKDFNKAE---DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQ 433 (606)
T ss_pred ccch-HHHHHHHHHhhhhccHHHHHHHHHHH---hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHH
Confidence 4433 26667778899999999999999886 4555 5788888888899999999999999988 55664 446666
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 264 LLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 264 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
+..+..+.+.+++++..|+..++..|..+..|+....++...+++++|.+.|+..++.
T Consensus 434 l~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 434 LCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 7667677789999999999999999999999999999999999999999999988764
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-07 Score=88.58 Aligned_cols=273 Identities=12% Similarity=0.034 Sum_probs=209.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 012539 22 DVVCQTAMISACAKCGDVDLARKMFDEMPERD---PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA 98 (461)
Q Consensus 22 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 98 (461)
|+.....-.+-+-..+++.+..++++...+.| ...+-.-|.++...|+..+-..+=.+|.+.- +-...+|-++.--
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHH
Confidence 44444555566778899999999999887654 4466677788999999998888888888853 4467899999999
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhCCChHHHH
Q 012539 99 CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--R-NVYTWTSVIGGLAMNGAGEKSL 175 (461)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~ 175 (461)
|...|...+|++.+.+..... +.-...|-.+...|+-.|.-|.|...+....+ + .-..+--+.--|.+.+..+.|.
T Consensus 322 Yl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 988999999999999887754 33456788899999999999999888765442 1 1111222344577889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhc-CCc----cChhHHHHHHHHHHhcCCHHHHHHHHH
Q 012539 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREY-GIE----PWLEHYGCLVDLYGRAGRLDEALDVIN 250 (461)
Q Consensus 176 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (461)
+.|.+.... .+.|+...+-+.-.....+.+.+|..+|+..+..- .+. -...+++.|..+|.+.+.+++|+..++
T Consensus 401 ~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 401 KFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 999998774 23356667766666667899999999998876311 111 134568889999999999999999999
Q ss_pred hC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHH
Q 012539 251 KM-PMK-PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297 (461)
Q Consensus 251 ~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 297 (461)
+. ... .+..++.++.-.+...|+++.|...|.+.+.+.|++..+-..
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~l 528 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISEL 528 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHH
Confidence 88 333 467788888888999999999999999999999998644333
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-07 Score=91.05 Aligned_cols=96 Identities=13% Similarity=0.104 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhc
Q 012539 228 HYGCLVDLYGRAGRLDEALDVINKM-PMKPHAG-AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAES 305 (461)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 305 (461)
++..+...|-..|++++|++++++. ...|+.+ .|..-...+...|++.+|....+.+.++++.|...-+-.+.-+.++
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC
Confidence 3344556666677777777777655 3345433 5555555566777777777777777777766655555555666677
Q ss_pred CChhHHHHHHHHHHhCCC
Q 012539 306 KNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 306 g~~~~a~~~~~~m~~~g~ 323 (461)
|++++|.++.....+.+.
T Consensus 276 ~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDV 293 (517)
T ss_pred CCHHHHHHHHHhhcCCCC
Confidence 777777777666655544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-06 Score=79.73 Aligned_cols=261 Identities=11% Similarity=-0.013 Sum_probs=193.2
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHH
Q 012539 52 RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVS-MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130 (461)
Q Consensus 52 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 130 (461)
.|+.....+...+...|+.++|+..|++.+. +.|+..+ ...-.-.+.+.|+.+....+...+.... +.+..-|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 4788899999999999999999999999877 3454432 2222233456778877777777666543 1222223223
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCcH
Q 012539 131 VDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP-NEVTFVSVLRGCCVVGLV 206 (461)
Q Consensus 131 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~ 206 (461)
+......++++.|+.+-++..+ +++..+-.-...+.+.|++++|.-.|+..+. +.| +...|..|+.+|...|.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchH
Confidence 3444557788899888887664 4566666666788999999999999999887 444 678999999999999999
Q ss_pred HHHHHHHHHhhhhcCCccChhHHHHHH-HHHHh-cCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHH
Q 012539 207 EEGREHFDSMRREYGIEPWLEHYGCLV-DLYGR-AGRLDEALDVINKM-PMKPHAG-AWGALLNACRMYKNTEMGELASR 282 (461)
Q Consensus 207 ~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~~-~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~ 282 (461)
.+|.-+-+...+. ++.+..+...+. ..+.- ...-++|.+++++. ..+|+-. ..+.+...|..-|..+.++.+++
T Consensus 385 kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 9998887776643 333455554442 23322 23357889998887 6677755 66777777999999999999999
Q ss_pred HHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 283 KLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 283 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
+.....|++ ...+.|...+...+.+.+|.+.|.....
T Consensus 463 ~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 463 KHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999988876 4889999999999999999999987654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.4e-07 Score=86.40 Aligned_cols=285 Identities=11% Similarity=0.040 Sum_probs=187.8
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCCC--Ch-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHh----c
Q 012539 29 MISACAKCGDVDLARKMFDEMPER--DP-IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACT----H 101 (461)
Q Consensus 29 li~~~~~~g~~~~A~~~~~~m~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~----~ 101 (461)
....+...|++++|++.++.-... |. .........+.+.|+.++|..+|+.+++.+ |+...|...+..+. .
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 345667889999999999875543 43 345567788889999999999999999864 66666655555444 1
Q ss_pred --cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH-HHHHHHHhcCCCCH-HHHHHHHHHHHhCCChHHHHHH
Q 012539 102 --LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN-KAMDFFWGMKERNV-YTWTSVIGGLAMNGAGEKSLEL 177 (461)
Q Consensus 102 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~ 177 (461)
..+.+....+++.+...-...+ ....+.-.+..-..+. .+...+..+..+.+ .+++.+-..|....+.+-..++
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~--~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSD--APRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred cccccHHHHHHHHHHHHHhCcccc--chhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHH
Confidence 2246777788887766542212 2211211122111222 23444444555555 4566666666655555555566
Q ss_pred HHHHHHc----C----------CCCCH--HHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcC
Q 012539 178 FSLMKQA----G----------VRPNE--VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAG 240 (461)
Q Consensus 178 ~~~m~~~----g----------~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 240 (461)
+...... + -+|.. .++.-+...|...|+.++|+.+.+..+. ..|+ +..|..-...|-+.|
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCC
Confidence 6655432 1 12333 2445556677789999999999998875 3665 788999999999999
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcc--CCC-------cchHHHHHHHHhhcCChh
Q 012539 241 RLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELE--TKN-------HGAYVLLSNIYAESKNWD 309 (461)
Q Consensus 241 ~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~ 309 (461)
++++|.+.++.. ...+ |...-+-....+.+.|++++|...+....+.+ |.. .......+.+|.+.|++.
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999887 3333 44455555666889999999999998887654 221 112245788899999999
Q ss_pred HHHHHHHHHHh
Q 012539 310 RVINVRQIMKA 320 (461)
Q Consensus 310 ~a~~~~~~m~~ 320 (461)
.|.+-|....+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 99887766654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.4e-08 Score=96.62 Aligned_cols=85 Identities=19% Similarity=0.159 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHH
Q 012539 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCL 232 (461)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 232 (461)
++..+|.+++.+-...|+.+.|..++.+|++.|++.+..-|..|+-+ .++...+..++..|.+. |+.|+.+|+.-.
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~ady 277 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADY 277 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHH
Confidence 68889999999999999999999999999999999998888877755 78888888888888664 999999999887
Q ss_pred HHHHHhcCC
Q 012539 233 VDLYGRAGR 241 (461)
Q Consensus 233 i~~~~~~g~ 241 (461)
+..+.+.|.
T Consensus 278 vip~l~N~~ 286 (1088)
T KOG4318|consen 278 VIPQLSNGQ 286 (1088)
T ss_pred HHhhhcchh
Confidence 776666544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.7e-08 Score=93.89 Aligned_cols=219 Identities=14% Similarity=0.064 Sum_probs=176.5
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHH
Q 012539 99 CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSL 175 (461)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 175 (461)
+.+.|++.+|.-.|+..++.. |.+...|-.|.-.....++-..|+..+.+..+ .|..+.-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 456788999999999888876 66788999999999999998899999988775 36678888888899999999999
Q ss_pred HHHHHHHHcCCC-----C---CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHH
Q 012539 176 ELFSLMKQAGVR-----P---NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALD 247 (461)
Q Consensus 176 ~~~~~m~~~g~~-----p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 247 (461)
..++.-.....+ + +..+-.. ........+....++|-.+....+..+|+.++..|.-.|--.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999988664211 0 0000000 12223334556667777776665666888899999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 248 VINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 248 ~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
.|+.+ ..+| |..+||-|...++...+.++|+..|.+++++.|.-..+...|...|...|.+++|.+.|-....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99988 6677 4559999999999999999999999999999999999999999999999999999998877654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.7e-07 Score=76.16 Aligned_cols=184 Identities=14% Similarity=0.018 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 135 (461)
+...|.-+|.+.|++..|..-+++.++.+ +-+..++..+...|.+.|..+.|.+.|++.++.. +.+..+.|.....++
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45556667777777777777777776643 2244466666666677777777777777766654 344555566666666
Q ss_pred hcCCHHHHHHHHHhcC-CCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHH
Q 012539 136 KCGNMNKAMDFFWGMK-ERN----VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEG 209 (461)
Q Consensus 136 ~~g~~~~A~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a 209 (461)
..|++++|...|++.. .|+ ..+|..+.-+..+.|+.+.|.+.|++..+. .|+ ..+...+.......|+...|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHH
Confidence 6666666666666544 232 245555555555666666666666655553 222 33444444555555555555
Q ss_pred HHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHH
Q 012539 210 REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245 (461)
Q Consensus 210 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 245 (461)
..+++..... ..++....-..|..-.+.|+.+.+
T Consensus 193 r~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a 226 (250)
T COG3063 193 RLYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAA 226 (250)
T ss_pred HHHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHH
Confidence 5555554332 224444433334443444444433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4e-07 Score=76.56 Aligned_cols=197 Identities=12% Similarity=0.019 Sum_probs=128.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhC
Q 012539 92 MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMN 168 (461)
Q Consensus 92 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 168 (461)
...+.-.|...|+...|+.-+++.++.. |.+..++..+...|.+.|+.+.|.+.|+... ..+-...|.-..-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 4445556677777777777777777764 4455666777777777777777777777654 23456666666677777
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcCCHHHHH
Q 012539 169 GAGEKSLELFSLMKQAGVRP-NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAGRLDEAL 246 (461)
Q Consensus 169 g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 246 (461)
|++++|...|++......-| -..||..+.-+..+.|+.+.|...|++.++ ..|+ +.....+.....+.|++-.|.
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHH
Confidence 77777777777776542222 245666666666677777777777776654 2333 456666777777777777777
Q ss_pred HHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCc
Q 012539 247 DVINKM--PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 247 ~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
.+++.. ...++..+.-..|..-...||...+.+.-..+....|.+.
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 777666 2235555555555666677777777777777777666654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.96 E-value=3e-06 Score=80.70 Aligned_cols=297 Identities=10% Similarity=-0.074 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 012539 23 VVCQTAMISACAKCGDVDLARKMFDEMPE---RDP---IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL 96 (461)
Q Consensus 23 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 96 (461)
...|..+...+...|+.+.+...+....+ ++. .........+...|++++|.+.+++..+.. +.|...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 44566677777778888876666655331 222 223334456678899999999999988753 223334432 2
Q ss_pred HHHh----ccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCC
Q 012539 97 SACT----HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNG 169 (461)
Q Consensus 97 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 169 (461)
..+. ..+..+.+.+.+.. .....+........+...+...|++++|...+++..+ .+...+..+...|...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 2222 23445555555544 1112223344555667788999999999999998764 35678888899999999
Q ss_pred ChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHH-H--HHHHHHHhcCCHH
Q 012539 170 AGEKSLELFSLMKQAGV-RPNE--VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHY-G--CLVDLYGRAGRLD 243 (461)
Q Consensus 170 ~~~~A~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~ 243 (461)
++++|...+++...... .|+. ..|..+...+...|+.++|..+++.........+..... + .++..+...|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 99999999999877432 2332 235567778889999999999999875321111222111 1 2333344445333
Q ss_pred HHHHH---HHhC-CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCC---------CcchHHHHHHHHhhcCC
Q 012539 244 EALDV---INKM-PMKPH---AGAWGALLNACRMYKNTEMGELASRKLVELETK---------NHGAYVLLSNIYAESKN 307 (461)
Q Consensus 244 ~A~~~---~~~~-~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~ 307 (461)
.+.++ .... +..|. .........++...|+.+.|...++.+...... ..........++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 33332 1111 11111 122234555578889999999999888753211 23344566667789999
Q ss_pred hhHHHHHHHHHHhCC
Q 012539 308 WDRVINVRQIMKAKG 322 (461)
Q Consensus 308 ~~~a~~~~~~m~~~g 322 (461)
+++|.+.+......+
T Consensus 323 ~~~A~~~L~~al~~a 337 (355)
T cd05804 323 YATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998876643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.7e-08 Score=88.92 Aligned_cols=204 Identities=7% Similarity=-0.020 Sum_probs=89.7
Q ss_pred cCCHHHHHHHHhhCCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHH
Q 012539 36 CGDVDLARKMFDEMPER----DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWA 111 (461)
Q Consensus 36 ~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 111 (461)
.|++..++.-.+ .... +.....-+.++|...|+++.++. +..... .|.......+...+....+-+.+..-
T Consensus 14 ~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 14 LGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp TT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred hhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHHH
Confidence 566666664443 1111 23344455666666666654432 232222 45555554444444332333333333
Q ss_pred HHHHHHcCCC-CchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 012539 112 HVYIERNRLK-MTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE 190 (461)
Q Consensus 112 ~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 190 (461)
+......... .+..+......++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..|
T Consensus 89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD- 163 (290)
T PF04733_consen 89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED- 163 (290)
T ss_dssp HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-
Confidence 3322222212 22233333334455566666666666554 34555555566666666666666666666542 233
Q ss_pred HHHHHHHHHHhh----cCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012539 191 VTFVSVLRGCCV----VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251 (461)
Q Consensus 191 ~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (461)
.+...+..++.. ...+.+|.-+|+++.. ...+++.+.+.+..+....|++++|.+++++
T Consensus 164 ~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~ 226 (290)
T PF04733_consen 164 SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEE 226 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 222223333221 1234555555555432 2233444444444444444444444444444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.7e-07 Score=96.69 Aligned_cols=209 Identities=12% Similarity=0.092 Sum_probs=176.3
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------CHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER--------NVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
|++.+... |.+...|-..|......++.++|++++++.... -.-.|.++++.-...|.-+...++|+++.+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 44444443 555667888899999999999999999988742 345799999888888988999999999987
Q ss_pred cCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHH
Q 012539 184 AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM----PMKPHAG 259 (461)
Q Consensus 184 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~ 259 (461)
. --....|..|...|.+.+..++|-++++.|.++++ .....|...++.+.+.++-+.|..++++. |.+....
T Consensus 1526 y--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1526 Y--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred h--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 4 33356688999999999999999999999999777 56778999999999999999999999877 3333455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCcc
Q 012539 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325 (461)
Q Consensus 260 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 325 (461)
........-.++|+.+.+..+|+......|.....|+.++..-.+.|+.+.++.+|++....++.+
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 667777778899999999999999999999999999999999999999999999999999988754
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.5e-06 Score=74.91 Aligned_cols=294 Identities=14% Similarity=0.130 Sum_probs=211.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHH---HHHHHcCChHHHHHHHHHHHHCCCCcCHHH-HHHHHHH
Q 012539 23 VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAML---AGYAQCGKSREALHLFHLMQIHDVKLNEVS-MVSVLSA 98 (461)
Q Consensus 23 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~ 98 (461)
+.----|.+.+...|++.+|+.-|....+-|+..|-++. ..|...|+...|+.=+.+.++ ++||-.. -..-...
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchh
Confidence 333444666777889999999999988888888777765 578889999999998888887 5777653 2233455
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCc--hHHH------------HHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHH
Q 012539 99 CTHLGALDQGRWAHVYIERNRLKMT--VTLG------------TALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSV 161 (461)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~------------~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 161 (461)
+.+.|.++.|..-|+.+++...... ..++ ...+..+...|+...|+.....+.+ -|...|..-
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~R 195 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQAR 195 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHH
Confidence 6788999999999999987653111 1111 1234455667899999888887764 477888888
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChh----HHHHH---H-
Q 012539 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLE----HYGCL---V- 233 (461)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l---i- 233 (461)
..+|...|.+..|+.-++...+.. .-+..++..+-..+...|+.+.++...++.+ .+.|+-. .|-.| +
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHH
Confidence 899999999999998888876643 2244555566667778888888888777665 4566532 12211 1
Q ss_pred -----HHHHhcCCHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 012539 234 -----DLYGRAGRLDEALDVINKM-PMKPHA-----GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIY 302 (461)
Q Consensus 234 -----~~~~~~g~~~~A~~~~~~~-~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 302 (461)
....+.+++.++++-.+.. ...|.. ..+..+-.++...+++.+|++...++++.+|+|..++---..+|
T Consensus 272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAY 351 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 1223456666666666554 334442 24555666788889999999999999999999999999999999
Q ss_pred hhcCChhHHHHHHHHHHhCC
Q 012539 303 AESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 303 ~~~g~~~~a~~~~~~m~~~g 322 (461)
.-...+++|+.-|+...+.+
T Consensus 352 l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred hhhHHHHHHHHHHHHHHhcC
Confidence 99999999999998876643
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.6e-08 Score=87.22 Aligned_cols=244 Identities=9% Similarity=0.027 Sum_probs=136.0
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHH
Q 012539 63 GYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142 (461)
Q Consensus 63 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 142 (461)
-+.-.|++..++.-.+ ........+......+.+++...|+.+.+. ..+.+.. +|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3444577777775554 222222223445555667777777765433 3333333 4555554444443333345555
Q ss_pred HHHHHHhcC-CC---CHHHHHH-HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhh
Q 012539 143 AMDFFWGMK-ER---NVYTWTS-VIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMR 217 (461)
Q Consensus 143 A~~~~~~~~-~~---~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (461)
+..-+++.. ++ +-.++.. ....+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555554433 22 1112222 223455567777777777642 244555566677777788888888887775
Q ss_pred hhcCCccChhHHHHHHHHH----HhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC
Q 012539 218 REYGIEPWLEHYGCLVDLY----GRAGRLDEALDVINKM--PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKN 291 (461)
Q Consensus 218 ~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 291 (461)
+ +..| .+...+..++ .-.+.+.+|..+|+++ ...+++.+.+.+..+....|++++|+.++++..+.+|.+
T Consensus 159 ~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 159 Q---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp C---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred h---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 2 3333 2333333333 2234577788888777 223566677777777777888888888888777777777
Q ss_pred cchHHHHHHHHhhcCCh-hHHHHHHHHHHhC
Q 012539 292 HGAYVLLSNIYAESKNW-DRVINVRQIMKAK 321 (461)
Q Consensus 292 ~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~ 321 (461)
+.+...++.+....|+. +.+.+++.+++..
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 77777777777777777 5566677776653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.5e-06 Score=80.10 Aligned_cols=309 Identities=14% Similarity=0.145 Sum_probs=155.7
Q ss_pred ccCCchHHHHHHhcCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 012539 4 ELGCLGYCQKVFDGIHE-----PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78 (461)
Q Consensus 4 ~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 78 (461)
+.|++..-++.|+..+. ....+|...+....+.|-++.+.+++++-.+-++..-+.-|..++..+++++|-+.+.
T Consensus 114 ~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la 193 (835)
T KOG2047|consen 114 KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLA 193 (835)
T ss_pred hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 34455555555554331 1233455555555555555566666655555555555555555555666665555555
Q ss_pred HHHHCC------CCcCHHHHHHHHHHHhccCCHHH---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHh
Q 012539 79 LMQIHD------VKLNEVSMVSVLSACTHLGALDQ---GRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWG 149 (461)
Q Consensus 79 ~m~~~~------~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 149 (461)
..+... .+.+...|..+-...++..+.-. ...+++.++..-...-...|++|.+-|.+.|.+++|..+|++
T Consensus 194 ~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyee 273 (835)
T KOG2047|consen 194 TVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEE 273 (835)
T ss_pred HhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 443211 12233333333333332222111 112222222221111234566677777777777777666655
Q ss_pred cCCC----------------------------------------------------------------------CHHHHH
Q 012539 150 MKER----------------------------------------------------------------------NVYTWT 159 (461)
Q Consensus 150 ~~~~----------------------------------------------------------------------~~~~~~ 159 (461)
..+. ++..|.
T Consensus 274 ai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~ 353 (835)
T KOG2047|consen 274 AIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWH 353 (835)
T ss_pred HHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHH
Confidence 4321 111111
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc--C-hhHHH
Q 012539 160 SVIGGLAMNGAGEKSLELFSLMKQAGVRPN------EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP--W-LEHYG 230 (461)
Q Consensus 160 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~-~~~~~ 230 (461)
.-+. ...|+..+-...|.+..+. +.|- ...|..+...|-..|+++.|+.+|++..+- ..+- + ..+|.
T Consensus 354 kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V-~y~~v~dLa~vw~ 429 (835)
T KOG2047|consen 354 KRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV-PYKTVEDLAEVWC 429 (835)
T ss_pred hhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC-CccchHHHHHHHH
Confidence 1111 1134555566666666543 3332 234666677777777777777777766532 1111 1 34555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC---CCC-----------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCC
Q 012539 231 CLVDLYGRAGRLDEALDVINKM---PMK-----------------PHAGAWGALLNACRMYKNTEMGELASRKLVELETK 290 (461)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~~---~~~-----------------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 290 (461)
.-.++=.+..+++.|+++.+.. |.. .+...|..++...-..|-++....++++++++.--
T Consensus 430 ~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria 509 (835)
T KOG2047|consen 430 AWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA 509 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 5556666667777777777666 211 12234555555555666677777777777766544
Q ss_pred CcchHHHHHHHHhhcCChhHHHHHHH
Q 012539 291 NHGAYVLLSNIYAESKNWDRVINVRQ 316 (461)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~a~~~~~ 316 (461)
.|..-...+..+....-++++.++++
T Consensus 510 TPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 510 TPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44444444444555555666666664
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-06 Score=75.73 Aligned_cols=284 Identities=11% Similarity=0.028 Sum_probs=199.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHH-HHHHHhc
Q 012539 26 QTAMISACAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVS-VLSACTH 101 (461)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-ll~~~~~ 101 (461)
+++.+.-+.+..++++|++++..-.++ +....+.|..+|-...++..|-+.++++-.. .|...-|.. -...+-+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 455566667788999999998876554 4556788888999999999999999998774 455544432 2344556
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHH--HHHHHHhcCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHH
Q 012539 102 LGALDQGRWAHVYIERNRLKMTVTLGTA--LVDMYSKCGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAMNGAGEKSLELF 178 (461)
Q Consensus 102 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~ 178 (461)
.+.+..|.++...|... ++...-.. -.......+++..++.+.++.+ +.+..+.+...-...+.|++++|++-|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 67788888887776543 11111111 1112234688888899998888 456666666666677899999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-------------Ch--------hHHHHHHHH--
Q 012539 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-------------WL--------EHYGCLVDL-- 235 (461)
Q Consensus 179 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-------------~~--------~~~~~li~~-- 235 (461)
+...+-+--.....|+..+ +..+.++.+.|+++..+++++ |+.. |+ -+-+.++.+
T Consensus 168 qaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 9887643333456676544 555678899999988888764 5431 11 123334443
Q ss_pred -----HHhcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcC
Q 012539 236 -----YGRAGRLDEALDVINKMPM----KPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESK 306 (461)
Q Consensus 236 -----~~~~g~~~~A~~~~~~~~~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 306 (461)
+.+.|+++.|.+.+..||- ..|++|...+.-. -..+++....+-+.-+.+++|-.+.||..++-.|++..
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhH
Confidence 4577999999999999942 3577776655332 34566777777788888899988889999999999999
Q ss_pred ChhHHHHHHHH
Q 012539 307 NWDRVINVRQI 317 (461)
Q Consensus 307 ~~~~a~~~~~~ 317 (461)
-++-|..++.+
T Consensus 325 yf~lAADvLAE 335 (459)
T KOG4340|consen 325 YFDLAADVLAE 335 (459)
T ss_pred HHhHHHHHHhh
Confidence 99999988865
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.7e-06 Score=82.37 Aligned_cols=125 Identities=17% Similarity=0.134 Sum_probs=100.8
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhc
Q 012539 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAG-AWGALLNACRMY 271 (461)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~ 271 (461)
.....+...+..++|...+.+.. ++.| ....|......+...|..++|.+.|... .+.|+.+ +..++...+...
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 34455666677777776666654 3334 4566777777888889999999988776 6677655 888888899999
Q ss_pred CChHHHHH--HHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 272 KNTEMGEL--ASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 272 ~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
|+...|.. ++..+.+.+|.++..|..|..++.+.|+.++|.+.|+...+..
T Consensus 732 G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 99888888 9999999999999999999999999999999999999877643
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.3e-06 Score=72.30 Aligned_cols=286 Identities=16% Similarity=0.093 Sum_probs=210.5
Q ss_pred cccCCchHHHHHHhcCCCCCHHHHHHHH---HHHHHcCCHHHHHHHHhhCCCCChhHHHH---HHHHHHHcCChHHHHHH
Q 012539 3 AELGCLGYCQKVFDGIHEPDVVCQTAMI---SACAKCGDVDLARKMFDEMPERDPIAWNA---MLAGYAQCGKSREALHL 76 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---li~~~~~~g~~~~A~~~ 76 (461)
...|++.+|+.-|....+-|+..|.++. ..|...|+-..|+.=|++..+..+..+.+ -...+.+.|.+++|..=
T Consensus 49 la~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~D 128 (504)
T KOG0624|consen 49 LARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEAD 128 (504)
T ss_pred HHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHH
Confidence 3578889999999998888888887765 46778888888887777766433333333 33567889999999999
Q ss_pred HHHHHHCCCCcCH--H------------HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHH
Q 012539 77 FHLMQIHDVKLNE--V------------SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142 (461)
Q Consensus 77 ~~~m~~~~~~p~~--~------------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 142 (461)
|+..++.....+. . .....+..+...|+...++.....+++.. +-+...+..-..+|...|+...
T Consensus 129 F~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~ 207 (504)
T KOG0624|consen 129 FDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKK 207 (504)
T ss_pred HHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHH
Confidence 9999876431111 1 12233445567789999999999998874 6688888888999999999999
Q ss_pred HHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH-H---HHH---------HHHHhhcCcH
Q 012539 143 AMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT-F---VSV---------LRGCCVVGLV 206 (461)
Q Consensus 143 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~---~~l---------l~~~~~~g~~ 206 (461)
|+.=++... ..+..+..-+-..+...|+.+.++...++-.+ +.||... | -.| +......+.+
T Consensus 208 AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~ 285 (504)
T KOG0624|consen 208 AIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHW 285 (504)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 987666544 56777888888889999999999999999887 5777432 1 111 1122345667
Q ss_pred HHHHHHHHHhhhhcCCccC-----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHH
Q 012539 207 EEGREHFDSMRREYGIEPW-----LEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH-AGAWGALLNACRMYKNTEMGEL 279 (461)
Q Consensus 207 ~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~ 279 (461)
.++..-.+...+. .|. ...+..+-.+|...|++.+|++...+. .+.|| +.++.--..+|.....++.|+.
T Consensus 286 t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~ 362 (504)
T KOG0624|consen 286 TECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIH 362 (504)
T ss_pred HHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHH
Confidence 6777766666542 343 233445666778889999999988776 56676 6688888888999999999999
Q ss_pred HHHHHhhccCCCcch
Q 012539 280 ASRKLVELETKNHGA 294 (461)
Q Consensus 280 ~~~~~~~~~p~~~~~ 294 (461)
-|+++.+.++++..+
T Consensus 363 dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 363 DYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHhcCcccHHH
Confidence 999999999988644
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.3e-05 Score=71.74 Aligned_cols=313 Identities=10% Similarity=0.057 Sum_probs=150.3
Q ss_pred ccccCCchHHHHHHhcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCC---------------Chh---H----
Q 012539 2 YAELGCLGYCQKVFDGIH---EPDVVCQTAMISACAKCGDVDLARKMFDEMPER---------------DPI---A---- 56 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------~~~---~---- 56 (461)
|.+.|++++|..++..+. .++...|-.|.-.+.-.|.+.+|..+-.+.++. |.. +
T Consensus 67 ~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~ 146 (557)
T KOG3785|consen 67 YFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSS 146 (557)
T ss_pred HHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 456788999999887654 366677777777777778888888877776542 111 1
Q ss_pred -------HHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HhccCCHHHHHHHHHHHHHcCCCCc-----
Q 012539 57 -------WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA-CTHLGALDQGRWAHVYIERNRLKMT----- 123 (461)
Q Consensus 57 -------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~----- 123 (461)
--+|.+..-..-.+.+|++++.+....+ |+....|.-+.. |.+..-++-+.+++.--++.- +.+
T Consensus 147 LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~N 223 (557)
T KOG3785|consen 147 LQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKN 223 (557)
T ss_pred HhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHH
Confidence 1123333333445778888887776542 333333333222 233333333333322222110 111
Q ss_pred -------------------------------------------------------------hHHHHHHHHHHHhcCCHHH
Q 012539 124 -------------------------------------------------------------VTLGTALVDMYSKCGNMNK 142 (461)
Q Consensus 124 -------------------------------------------------------------~~~~~~li~~~~~~g~~~~ 142 (461)
+..-..|+--|.+.+++++
T Consensus 224 Lkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqe 303 (557)
T KOG3785|consen 224 LKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQE 303 (557)
T ss_pred HHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHH
Confidence 1111234445677788888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhhcCcHHHHHHHHH
Q 012539 143 AMDFFWGMKERNVYTWTSVIGGLAMNGA-------GEKSLELFSLMKQAGVRPNEV-TFVSVLRGCCVVGLVEEGREHFD 214 (461)
Q Consensus 143 A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~ 214 (461)
|..+.+++...++.-|-.-.-.++..|+ ..-|.+.|+-.-.++..-|.. --.++.+++.-..++++.+.+++
T Consensus 304 A~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Yln 383 (557)
T KOG3785|consen 304 AISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLN 383 (557)
T ss_pred HHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777765444333322222333332 233444444433333222211 11223333333445555555555
Q ss_pred HhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHH-HHhcCChHHHHHHHHHHhhcc-CC
Q 012539 215 SMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP-MK-PHAGAWGALLNA-CRMYKNTEMGELASRKLVELE-TK 290 (461)
Q Consensus 215 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~-p~ 290 (461)
.+.. +-...|...+ .+..+++..|++.+|+++|-.+. .+ .|..+|.+++.- |.+.+.++.|-.+ +++.+ |.
T Consensus 384 Si~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~---~lk~~t~~ 458 (557)
T KOG3785|consen 384 SIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM---MLKTNTPS 458 (557)
T ss_pred HHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH---HHhcCCch
Confidence 5532 2222233333 34555666666666666655551 11 344455444443 4445555544333 22222 21
Q ss_pred Cc-chHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 291 NH-GAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 291 ~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
+. .....+.+-|.+++.+--|.+.|+.+....
T Consensus 459 e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 459 ERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 11 122334455555555555555555554433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.1e-05 Score=73.73 Aligned_cols=267 Identities=12% Similarity=0.022 Sum_probs=172.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CcCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHH--
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLFHLMQIHDV-KLNEVS-MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTA-- 129 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 129 (461)
+..|..+...+...|+++++...+.+..+... .++... .......+...|+++++...++++.+.. |.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 55677788888888999888777777655321 223322 2222344567899999999999998874 444444442
Q ss_pred -HHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCc
Q 012539 130 -LVDMYSKCGNMNKAMDFFWGMKE--R-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205 (461)
Q Consensus 130 -li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 205 (461)
+.......|..+.+.+.+..... | .......+...+...|++++|.+.+++..+.. +.+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 22222335666667776665332 2 23455566678899999999999999998853 3345677788889999999
Q ss_pred HHHHHHHHHHhhhhcCCccCh--hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHH----H--HHHHHHHhcCChHH
Q 012539 206 VEEGREHFDSMRREYGIEPWL--EHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGAW----G--ALLNACRMYKNTEM 276 (461)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~----~--~ll~~~~~~~~~~~ 276 (461)
+++|..+++.........|+. ..|..+...+...|++++|..++++. ...|....+ + .++.-+...|....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999887532212332 34557888999999999999999986 222311211 1 22333445554444
Q ss_pred HHHH---HHHHhhccCCCcchH--HHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 277 GELA---SRKLVELETKNHGAY--VLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 277 a~~~---~~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
+.+. ........|.....+ .....++...|+.++|.+.++.+....
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4443 222111112211222 357777889999999999999987643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.7e-05 Score=71.93 Aligned_cols=193 Identities=13% Similarity=0.137 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CH----HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---------
Q 012539 125 TLGTALVDMYSKCGNMNKAMDFFWGMKER---NV----YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP--------- 188 (461)
Q Consensus 125 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--------- 188 (461)
..|..+.+.|-..|+++.|+.+|++..+- .+ .+|..-...=.++.+++.|+++++......-.|
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 35667888999999999999999988753 22 456666677778889999999888775421111
Q ss_pred --------CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CC-CC
Q 012539 189 --------NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-P-MK-PH 257 (461)
Q Consensus 189 --------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~-p~ 257 (461)
+...|...++.--..|-++....+++.++.-.-..| .......-.+-...-++++.+++++- + ++ |+
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTP--qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP--QIIINYAMFLEEHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence 112244444444556788888888888875322223 33333334455677789999999886 2 23 55
Q ss_pred HH-HHHHHHHHHHh---cCChHHHHHHHHHHhhccCCCcc--hHHHHHHHHhhcCChhHHHHHHHHHH
Q 012539 258 AG-AWGALLNACRM---YKNTEMGELASRKLVELETKNHG--AYVLLSNIYAESKNWDRVINVRQIMK 319 (461)
Q Consensus 258 ~~-~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (461)
+. .|+..+.-+.+ ....+.|..+|+++++..|+... .|...+..-.+-|....|++++++..
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 54 89888877533 23689999999999998886432 33344444456788888999998853
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.8e-05 Score=72.38 Aligned_cols=313 Identities=11% Similarity=0.061 Sum_probs=181.2
Q ss_pred ccCCchHHHHHHhcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHH
Q 012539 4 ELGCLGYCQKVFDGIHEP---DVVCQTAMISACAKCGDVDLARKMFDEMP---ERDPIAWNAMLAGYAQCGKSREALHLF 77 (461)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 77 (461)
..|+-++|......+... +.+.|..+.-.+-...++++|++.|.... ..|...|.-|.-.-++.|+++.....-
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred cccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 357777888887777653 45668877777777888888888888644 335666666666666677777776666
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCchHHHHHH------HHHHHhcCCHHHHHHHHHhc
Q 012539 78 HLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL-KMTVTLGTAL------VDMYSKCGNMNKAMDFFWGM 150 (461)
Q Consensus 78 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l------i~~~~~~g~~~~A~~~~~~~ 150 (461)
.++.+.. +-....|.....+..-.|+...|..+.+...+... .|+...+.-. .....+.|..++|++.+...
T Consensus 133 ~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 133 NQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 6666532 22344566666677777778888887777776542 3444444322 22334567777777766655
Q ss_pred CCC--CH-HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-h-cCcHHHHHHHHHHhhhhc-----
Q 012539 151 KER--NV-YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC-V-VGLVEEGREHFDSMRREY----- 220 (461)
Q Consensus 151 ~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~-~g~~~~a~~~~~~~~~~~----- 220 (461)
... |- ..-......+.+.++.++|..++..+... .||...|...+..+. . .+..+....+|....+.+
T Consensus 212 e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~ 289 (700)
T KOG1156|consen 212 EKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHEC 289 (700)
T ss_pred hhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccccc
Confidence 432 22 22334455667778888888888887763 566555544433322 2 222222223333332211
Q ss_pred ----------------------------CCccChhHHHHHHHHHHhcCCHHH----HHHHHHhC-C------------CC
Q 012539 221 ----------------------------GIEPWLEHYGCLVDLYGRAGRLDE----ALDVINKM-P------------MK 255 (461)
Q Consensus 221 ----------------------------~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~~-~------------~~ 255 (461)
|+++ ++..+...|-.-...+- +..+...+ + ..
T Consensus 290 p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~ 366 (700)
T KOG1156|consen 290 PRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEP 366 (700)
T ss_pred chhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCC
Confidence 2111 22222222222111111 11111111 1 13
Q ss_pred CCHHHHHHHHH--HHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 256 PHAGAWGALLN--ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 256 p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
|....|....- .+-..|+++.|....+.+++..|.-+..|..=++++...|.+++|...+++..+..
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 55555554433 37777888888888888877777776777777788888888888888887776544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-06 Score=83.04 Aligned_cols=210 Identities=17% Similarity=0.165 Sum_probs=104.3
Q ss_pred cccCCchHHHHHHhcCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHH
Q 012539 3 AELGCLGYCQKVFDGIHE--P-DVVCQTAMISACAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCGKSREALHL 76 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~ 76 (461)
.+.|++.+|.-.|+.... | +...|-.|....+..++=..|+..+.+..+- |....-.|.-.|...|.-.+|+..
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 345566666666655443 2 3445666666666666555565555554432 344555555556666666666666
Q ss_pred HHHHHHCCCC--------cCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 012539 77 FHLMQIHDVK--------LNEVSMVSVLSACTHLGALDQGRWAHVYIER-NRLKMTVTLGTALVDMYSKCGNMNKAMDFF 147 (461)
Q Consensus 77 ~~~m~~~~~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 147 (461)
++.-+...++ ++..+-.. ........+....++|-.+.. .+..+|+.+...|.-.|--.|++++|...|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 6555432210 00000000 011111222333333333332 222245555555666666666666666666
Q ss_pred HhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhhcCcHHHHHHHHHHh
Q 012539 148 WGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE-VTFVSVLRGCCVVGLVEEGREHFDSM 216 (461)
Q Consensus 148 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (461)
+.... .|...||-|...++...+.++|+..|++.++ ++|+- .....|.-+|...|.+++|...|-.+
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 65542 2455666666666666666666666666655 45552 12223344555666666665555443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.6e-05 Score=82.96 Aligned_cols=318 Identities=10% Similarity=0.010 Sum_probs=200.0
Q ss_pred cCCchHHHHHHhcCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHhhCC----CC----C----hhHHHHHHHHHHHcC
Q 012539 5 LGCLGYCQKVFDGIHE----PDVVCQTAMISACAKCGDVDLARKMFDEMP----ER----D----PIAWNAMLAGYAQCG 68 (461)
Q Consensus 5 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~----~----~~~~~~li~~~~~~g 68 (461)
.|+++.+...++.++. .++.........+...|++++|..+++... .. + ......+...+...|
T Consensus 387 ~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 466 (903)
T PRK04841 387 QGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDG 466 (903)
T ss_pred cCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCC
Confidence 4556666666665531 223333344455567888998888877542 11 1 112223345567889
Q ss_pred ChHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHcCC---CC--chHHHHHHHHHHHhcCC
Q 012539 69 KSREALHLFHLMQIHDVKLNE----VSMVSVLSACTHLGALDQGRWAHVYIERNRL---KM--TVTLGTALVDMYSKCGN 139 (461)
Q Consensus 69 ~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~g~ 139 (461)
++++|...+++....-...+. .+.+.+...+...|++++|...+.+...... .+ .......+...+...|+
T Consensus 467 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~ 546 (903)
T PRK04841 467 DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF 546 (903)
T ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC
Confidence 999999999887763111222 2345555667788999999988888764311 11 12344566778888999
Q ss_pred HHHHHHHHHhcCC-------C----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHhhcC
Q 012539 140 MNKAMDFFWGMKE-------R----NVYTWTSVIGGLAMNGAGEKSLELFSLMKQA--GVRPN--EVTFVSVLRGCCVVG 204 (461)
Q Consensus 140 ~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~~~~~ll~~~~~~g 204 (461)
+++|...+++... + ....+..+...+...|++++|...+++.... ...+. ...+..+.......|
T Consensus 547 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G 626 (903)
T PRK04841 547 LQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARG 626 (903)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcC
Confidence 9999888876542 1 1223445556677789999999999887552 11222 333444556677889
Q ss_pred cHHHHHHHHHHhhhhcCCccChhHH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCHH----HHHHHHHHHHhcCC
Q 012539 205 LVEEGREHFDSMRREYGIEPWLEHY-----GCLVDLYGRAGRLDEALDVINKMPMK--PHAG----AWGALLNACRMYKN 273 (461)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~----~~~~ll~~~~~~~~ 273 (461)
+.++|...+.....-.........+ ...+..+...|+.+.|..++...... .... .+..+..++...|+
T Consensus 627 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 706 (903)
T PRK04841 627 DLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQ 706 (903)
T ss_pred CHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCC
Confidence 9999999888775321111111111 11224455688999999988776211 1111 13445556888999
Q ss_pred hHHHHHHHHHHhhccC------CCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 274 TEMGELASRKLVELET------KNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 274 ~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
.++|...++++..... ....++..+..++.+.|+.++|...+.+..+..
T Consensus 707 ~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 707 FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999876421 123467788889999999999999999887654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.6e-08 Score=57.62 Aligned_cols=33 Identities=45% Similarity=0.618 Sum_probs=27.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCC
Q 012539 18 IHEPDVVCQTAMISACAKCGDVDLARKMFDEMP 50 (461)
Q Consensus 18 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 50 (461)
+..||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567888888888888888888888888888874
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.3e-05 Score=72.33 Aligned_cols=114 Identities=13% Similarity=-0.026 Sum_probs=78.0
Q ss_pred ccccCCchHHHHHHhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHH--HHHHHHHHHcCChHHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIHE---PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAW--NAMLAGYAQCGKSREALHL 76 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~li~~~~~~g~~~~A~~~ 76 (461)
+...|++++|.+..++++. .|......=+-+..+.+++++|+.+.+.-...+.... -.=..+..+.+..++|+..
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~ 101 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKT 101 (652)
T ss_pred hccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHH
Confidence 4678889999998887653 3455666667778889999999977765443221111 1223344577888999888
Q ss_pred HHHHHHCCCCc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 012539 77 FHLMQIHDVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120 (461)
Q Consensus 77 ~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 120 (461)
++ |..+ |..+...-...|-+.++++++..+|+.+.+.+.
T Consensus 102 ~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 102 LK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred Hh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 87 3333 333666666778888999999999998877653
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.3e-06 Score=75.27 Aligned_cols=182 Identities=10% Similarity=-0.031 Sum_probs=125.4
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-H---HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--HHH
Q 012539 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--RN-V---YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE--VTF 193 (461)
Q Consensus 122 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~ 193 (461)
.....+..++..+.+.|++++|...|+++.. |+ . .+|..+..++.+.|++++|+..|+++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3455667788888999999999999987763 32 2 46778888899999999999999999874321111 244
Q ss_pred HHHHHHHhhc--------CcHHHHHHHHHHhhhhcCCccCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 012539 194 VSVLRGCCVV--------GLVEEGREHFDSMRREYGIEPWL-EHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGAL 264 (461)
Q Consensus 194 ~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 264 (461)
..+..++... |+.++|.+.++.+.+. .|+. ..+..+.... ...... . .....+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~----~~~~~~---~--------~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD----YLRNRL---A--------GKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH----HHHHHH---H--------HHHHHH
Confidence 4455555544 6788888888888754 3432 2222221110 011000 0 011234
Q ss_pred HHHHHhcCChHHHHHHHHHHhhccCCC---cchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 265 LNACRMYKNTEMGELASRKLVELETKN---HGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 265 l~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
...+...|+++.|...++.+.+..|++ +.++..++.++...|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455888999999999999999887764 468889999999999999999999988654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.6e-06 Score=79.64 Aligned_cols=193 Identities=13% Similarity=0.166 Sum_probs=116.8
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHH
Q 012539 97 SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLE 176 (461)
Q Consensus 97 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 176 (461)
.+......+.+|..+++.+..... ....|..+.+-|+..|+++-|.++|.+.. .++-.|..|.+.|+++.|.+
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHH
Confidence 344455666777777766655432 23355667777777788888877776543 34556777778888887777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 012539 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256 (461)
Q Consensus 177 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 256 (461)
+-.+... .......|.+-..-.-..|.+.+|.+++-.+. .|+ .-|.+|-+.|..++.+++.++..-..
T Consensus 813 la~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~ 880 (1636)
T KOG3616|consen 813 LAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDH 880 (1636)
T ss_pred HHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----Cch-----HHHHHHHhhCcchHHHHHHHHhChhh
Confidence 7665431 22233444444444556677777777764431 233 24667777777777777777652111
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHH
Q 012539 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316 (461)
Q Consensus 257 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 316 (461)
-..|-..+..-+-..|+...|+.-|-++ .-|.+-+++|-.++.|++|.++-+
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 1224444555566677777776655443 245556677777777777766654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.8e-08 Score=56.44 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=24.1
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 012539 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK 151 (461)
Q Consensus 119 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 151 (461)
|++||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777763
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.6e-05 Score=82.76 Aligned_cols=238 Identities=10% Similarity=0.104 Sum_probs=169.0
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCC---CchHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 012539 77 FHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN-RLK---MTVTLGTALVDMYSKCGNMNKAMDFFWGMKE 152 (461)
Q Consensus 77 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 152 (461)
|+++.... +.....|-.-+......++.+.|+++.+++++. ++. --..+|.+++++-..-|.-+...++|++..+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 44444432 234456777788888888999999998888763 111 1245777788887777888888899988875
Q ss_pred --CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc--ChhH
Q 012539 153 --RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP--WLEH 228 (461)
Q Consensus 153 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~ 228 (461)
.....|..|...|.+.+++++|.++|+.|.+. ..-....|...+..+.+.++-+.|..++.++++. ++- .+..
T Consensus 1526 ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEF 1602 (1710)
T ss_pred hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHH
Confidence 23467888889999999999999999999765 3455677888888888888889999999888753 222 3455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcc--CCCcc-hHHHHHHHHh
Q 012539 229 YGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELE--TKNHG-AYVLLSNIYA 303 (461)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~~~-~~~~l~~~~~ 303 (461)
....+.+-.+.|+.+.+..+|+.. ...| -...|+.++..-.++|+.+.+..+|+++..+. |.... .|.-.+.--.
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence 666677778899999999998887 2233 34589999999999999999999999998765 43433 3333333333
Q ss_pred hcCChhHHHHHHHHH
Q 012539 304 ESKNWDRVINVRQIM 318 (461)
Q Consensus 304 ~~g~~~~a~~~~~~m 318 (461)
..|+-+.+..+-.+.
T Consensus 1683 ~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1683 SHGDEKNVEYVKARA 1697 (1710)
T ss_pred hcCchhhHHHHHHHH
Confidence 445555544444433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.4e-05 Score=70.55 Aligned_cols=231 Identities=16% Similarity=0.070 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE-VSMVSVLSACTHLG-ALDQGRWAHVYIERNRLKMTVTLGTALVDM 133 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 133 (461)
+++.+-..+...++.++|+.+..++++. .|+. .+|+..-.++...+ .++++...+..+++.+ +.+..+|+.-..+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 4555556666677777777777777763 3433 34555545555555 4677777777776654 3444455544444
Q ss_pred HHhcCCH--HHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHH
Q 012539 134 YSKCGNM--NKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208 (461)
Q Consensus 134 ~~~~g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 208 (461)
+.+.|+. +++..+++.+.+ +|..+|+.....+...|+++++++.++++.+.+.. |...|+.....+.+.+...
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~- 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLG- 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccc-
Confidence 4445542 455555555542 35566666666666666666666666666664322 3334443333222221000
Q ss_pred HHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CChHHHHHHHH
Q 012539 209 GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMY----KNTEMGELASR 282 (461)
Q Consensus 209 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----~~~~~a~~~~~ 282 (461)
+ .....+++.....++ ...| |...|+-+...+... ++..+|...+.
T Consensus 194 ------------~----------------~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~ 245 (320)
T PLN02789 194 ------------G----------------LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCL 245 (320)
T ss_pred ------------c----------------ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHH
Confidence 0 000112333333222 3334 334666666665552 33456777777
Q ss_pred HHhhccCCCcchHHHHHHHHhhcC------------------ChhHHHHHHHHHH
Q 012539 283 KLVELETKNHGAYVLLSNIYAESK------------------NWDRVINVRQIMK 319 (461)
Q Consensus 283 ~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 319 (461)
.+.+.+|.++.+...|+..|.... ..++|.++++.+.
T Consensus 246 ~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 246 EVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 777777887778888888887532 2366777777773
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00015 Score=71.56 Aligned_cols=199 Identities=11% Similarity=0.051 Sum_probs=104.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcC-HHHHHHHH
Q 012539 21 PDVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN-EVSMVSVL 96 (461)
Q Consensus 21 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll 96 (461)
.|..+|..|.-+...+|+++.+.+.|++... .....|+.+...|...|.-..|+.+.+.-......|+ ...+...-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 5777888888888888999988888887553 2456788888888888888888888876655332343 33333333
Q ss_pred HHH-hccCCHHHHHHHHHHHHHc--CC--CCchHHHHHHHHHHHhc-----------CCHHHHHHHHHhcCCC---CHHH
Q 012539 97 SAC-THLGALDQGRWAHVYIERN--RL--KMTVTLGTALVDMYSKC-----------GNMNKAMDFFWGMKER---NVYT 157 (461)
Q Consensus 97 ~~~-~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~---~~~~ 157 (461)
..| .+.+..+++..+-.++++. +. ...+..+..+.-+|... ....++.+.+++..+. |+.+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 334 3455666666655555541 10 11122233333333221 1122334444443221 1111
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhh
Q 012539 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219 (461)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (461)
---+.--|+..++.+.|++..++..+.+-.-+...|..|.-.++..+++.+|+.+.+....+
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 11122224444555555555555555433444444444444444455555555544444433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.5e-06 Score=72.34 Aligned_cols=182 Identities=13% Similarity=0.064 Sum_probs=127.4
Q ss_pred cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--chHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CH---HHH
Q 012539 87 LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM--TVTLGTALVDMYSKCGNMNKAMDFFWGMKE--R-NV---YTW 158 (461)
Q Consensus 87 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~ 158 (461)
.....+......+...|+++.|...++.+.+..... ....+..+...|.+.|++++|...|+.+.+ | +. .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 356678888888999999999999999998865221 124667789999999999999999999864 2 22 256
Q ss_pred HHHHHHHHhC--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHH
Q 012539 159 TSVIGGLAMN--------GAGEKSLELFSLMKQAGVRPNEV-TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHY 229 (461)
Q Consensus 159 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 229 (461)
..+..++.+. |++++|.+.|+++... .|+.. ....+... +... ... . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~------~~~-~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLR------NRL-A--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHH------HHH-H--------HHH
Confidence 6666667665 7889999999999875 45432 22222111 0000 000 0 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccC
Q 012539 230 GCLVDLYGRAGRLDEALDVINKM----PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELET 289 (461)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 289 (461)
..+...|.+.|++++|...+++. +..| ....+..+..++...|+.++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 24666788899999999888877 2223 245788888889999999999998888776555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.1e-06 Score=70.19 Aligned_cols=119 Identities=16% Similarity=0.114 Sum_probs=87.4
Q ss_pred cCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--hHHH
Q 012539 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNA-CRMYKN--TEMG 277 (461)
Q Consensus 203 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~~~--~~~a 277 (461)
.++.+++...++...+ .-+.+...|..+...|...|++++|...|++. ...| +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4555666666666554 22345777888888888888888888888777 4445 44466666665 356666 4888
Q ss_pred HHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCC
Q 012539 278 ELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 278 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 323 (461)
..+++++.+.+|++..++..+...+.+.|++++|...++++.+...
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 8888888888888888888888888888888888888888876543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00032 Score=75.75 Aligned_cols=319 Identities=11% Similarity=0.009 Sum_probs=200.0
Q ss_pred cccCCchHHHHHHhcCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHH
Q 012539 3 AELGCLGYCQKVFDGIHEPDVVC--QTAMISACAKCGDVDLARKMFDEMPE----RDPIAWNAMLAGYAQCGKSREALHL 76 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~ 76 (461)
...|++.+|..........+... ...........|+++.+...++.++. .++.........+...|++++|...
T Consensus 352 ~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~ 431 (903)
T PRK04841 352 LAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTL 431 (903)
T ss_pred HHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHH
Confidence 34566666666555554332211 11222345567888888888887752 2333334455566788999999999
Q ss_pred HHHHHHCC--C----CcCHH--HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc----hHHHHHHHHHHHhcCCHHHHH
Q 012539 77 FHLMQIHD--V----KLNEV--SMVSVLSACTHLGALDQGRWAHVYIERNRLKMT----VTLGTALVDMYSKCGNMNKAM 144 (461)
Q Consensus 77 ~~~m~~~~--~----~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~ 144 (461)
+.+....- . .|... ....+...+...|+++.+...++.........+ ....+.+...+...|++++|.
T Consensus 432 l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~ 511 (903)
T PRK04841 432 LARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARAL 511 (903)
T ss_pred HHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 98775421 0 11111 222233445678999999999998876421222 134456677788899999999
Q ss_pred HHHHhcCC-------CC--HHHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHhhcCcHHH
Q 012539 145 DFFWGMKE-------RN--VYTWTSVIGGLAMNGAGEKSLELFSLMKQA----GVR--P-NEVTFVSVLRGCCVVGLVEE 208 (461)
Q Consensus 145 ~~~~~~~~-------~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~ll~~~~~~g~~~~ 208 (461)
..+++... +. ..++..+...+...|++++|...+++.... +.. | ....+..+...+...|++++
T Consensus 512 ~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 591 (903)
T PRK04841 512 AMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDE 591 (903)
T ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99887652 11 234556677788999999999999887542 211 1 12334445556677899999
Q ss_pred HHHHHHHhhhhcC-Ccc--ChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHH-----HHHHHHhcCChHH
Q 012539 209 GREHFDSMRREYG-IEP--WLEHYGCLVDLYGRAGRLDEALDVINKM----PMKPHAGAWGA-----LLNACRMYKNTEM 276 (461)
Q Consensus 209 a~~~~~~~~~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~-----ll~~~~~~~~~~~ 276 (461)
|...+........ ..+ ....+..+...+...|+.++|...+++. ........+.. .+..+...|+.+.
T Consensus 592 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 671 (903)
T PRK04841 592 AEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEA 671 (903)
T ss_pred HHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHH
Confidence 9999887754211 112 2334555667788899999999888776 11111111111 1233556789999
Q ss_pred HHHHHHHHhhccCCCcc----hHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 277 GELASRKLVELETKNHG----AYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 277 a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
|...+.......+.... .+..+..++...|++++|...+++....
T Consensus 672 A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 672 AANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 98887776543222211 1456788899999999999999887653
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.5e-05 Score=72.75 Aligned_cols=317 Identities=14% Similarity=0.035 Sum_probs=180.5
Q ss_pred cccCCchHHHHHHhcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHHcCChHHHHHH
Q 012539 3 AELGCLGYCQKVFDGIH---EPDVVCQTAMISACAKCGDVDLARKMFDEMPE--RD-PIAWNAMLAGYAQCGKSREALHL 76 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~ 76 (461)
...|+++.|...|-... ++|.+.|+.=..+|++.|++++|++==.+..+ |+ +..|+-+..++.-.|++++|+..
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 45799999999997753 46788899999999999999999876555443 43 45899999999999999999999
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHhccCC------------------------------------------------HHHH
Q 012539 77 FHLMQIHDVKLNEVSMVSVLSACTHLGA------------------------------------------------LDQG 108 (461)
Q Consensus 77 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~------------------------------------------------~~~a 108 (461)
|.+-++.. +.|...+..+..++..... .+..
T Consensus 93 y~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~ 171 (539)
T KOG0548|consen 93 YSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRL 171 (539)
T ss_pred HHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHH
Confidence 99887743 2344555555555411100 0000
Q ss_pred HHHHHHHHHc--------C-------CCC------------ch----------HHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 012539 109 RWAHVYIERN--------R-------LKM------------TV----------TLGTALVDMYSKCGNMNKAMDFFWGMK 151 (461)
Q Consensus 109 ~~~~~~~~~~--------~-------~~~------------~~----------~~~~~li~~~~~~g~~~~A~~~~~~~~ 151 (461)
.+.+..+... + ..| +. .-...+.++..+..+++.|++-+....
T Consensus 172 m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~ 251 (539)
T KOG0548|consen 172 MKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKAL 251 (539)
T ss_pred HHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 0000000000 0 000 00 001123344444444444444444333
Q ss_pred C--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC--C----HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCc
Q 012539 152 E--RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP--N----EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIE 223 (461)
Q Consensus 152 ~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 223 (461)
. .++.-++....+|...|.+.+.........+.|-.. + ...+..+..++.+.++.+.+...|.+....+. .
T Consensus 252 el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~R-t 330 (539)
T KOG0548|consen 252 ELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHR-T 330 (539)
T ss_pred hHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhc-C
Confidence 2 222333444445666665555555554444433110 0 11122223345555666777777766554321 2
Q ss_pred cChhHH-------------------------HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 012539 224 PWLEHY-------------------------GCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEM 276 (461)
Q Consensus 224 p~~~~~-------------------------~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 276 (461)
|+...- ..-...+.+.|++..|...|.++ ...| |...|.....+|.+.|.+..
T Consensus 331 ~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~ 410 (539)
T KOG0548|consen 331 PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPE 410 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHH
Confidence 221110 01123345567777777777766 3344 44467777777777777777
Q ss_pred HHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 277 GELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 277 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
|..-.+..++++|+....|.-=..++....+|++|.+.|++-.+.
T Consensus 411 aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 411 ALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777777777777667766666666777777777777766553
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.9e-05 Score=75.05 Aligned_cols=212 Identities=9% Similarity=0.068 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcc
Q 012539 23 VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHL 102 (461)
Q Consensus 23 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 102 (461)
...-..+...+.+.|-...|..+|++ +..|...|-+|...|+..+|..+..+..+ -+||+..|..+.+.....
T Consensus 398 Wq~q~~laell~slGitksAl~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFER-----LEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence 34445677888899999999999997 56788899999999999999999888777 378999999999888877
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHH
Q 012539 103 GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFS 179 (461)
Q Consensus 103 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 179 (461)
.-+++|.++.++.... .-..+.......++++++.+.|+.-.+ --..+|-.+..+..+.++++.|.+.|.
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 7788888887765432 112233333457899999999986553 356789999999999999999999999
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 180 LMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 180 ~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
.-.. ..|| ...|+.+-.+|.+.++-.+|...+.+..+ ++ ..+...|...+....+.|.+++|.+.+.++
T Consensus 544 rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 544 RCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 8877 5676 67899999999999999999999999876 35 445667777778888999999999998887
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00016 Score=69.12 Aligned_cols=142 Identities=17% Similarity=0.137 Sum_probs=95.2
Q ss_pred ChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhcCcHHHHHHHHH--------HhhhhcCCccChhHHHHHHHHHHhc
Q 012539 170 AGEKSLELFSLMKQAGVRPN--EVTFVSVLRGCCVVGLVEEGREHFD--------SMRREYGIEPWLEHYGCLVDLYGRA 239 (461)
Q Consensus 170 ~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~li~~~~~~ 239 (461)
.+..|.+++...-+. .|. .......+......|+++.|.+++. .+.+ +.-.+.+...++..|.+.
T Consensus 356 ~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~ 430 (652)
T KOG2376|consen 356 KHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE---AKHLPGTVGAIVALYYKI 430 (652)
T ss_pred HHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhc
Confidence 455666666665543 333 3334444555667899999999988 4432 233455677788888888
Q ss_pred CCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhH
Q 012539 240 GRLDEALDVINKM--------PMKPHA-GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310 (461)
Q Consensus 240 g~~~~A~~~~~~~--------~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 310 (461)
++-+-|..++.+. ...+.. .+|.-+..--.++|+.++|...++++.+.+|++..+...++.+|++. +.+.
T Consensus 431 ~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~ek 509 (652)
T KOG2376|consen 431 KDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEK 509 (652)
T ss_pred cCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHH
Confidence 7766555555544 222222 24444444456779999999999999999999999999999999876 5566
Q ss_pred HHHHHHH
Q 012539 311 VINVRQI 317 (461)
Q Consensus 311 a~~~~~~ 317 (461)
|..+-+.
T Consensus 510 a~~l~k~ 516 (652)
T KOG2376|consen 510 AESLSKK 516 (652)
T ss_pred HHHHhhc
Confidence 7666543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.6e-06 Score=80.20 Aligned_cols=188 Identities=19% Similarity=0.152 Sum_probs=131.7
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012539 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199 (461)
Q Consensus 120 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 199 (461)
++|-...-..+.+.+..+|-...|..+|++. ..|.-.|.+|...|+..+|..+..+..+ -+||...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4566666677888889999999999999875 4788888899999998899888888776 47888888888887
Q ss_pred HhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 012539 200 CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMG 277 (461)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a 277 (461)
.....-+++|.++.+....+ .-..+.....+.++++++.+.|+.- .+.| ...+|-.+..+..+.++.+.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 77777788888887765432 1111122223356666666666544 3333 334666666666677777777
Q ss_pred HHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 278 ELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 278 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
.+.|..-..++|++...|+++..+|.+.|+-.+|...+++..+.+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 777777777777777777777777777777777777777666655
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.3e-05 Score=78.06 Aligned_cols=234 Identities=11% Similarity=-0.016 Sum_probs=124.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 012539 21 PDVVCQTAMISACAKCGDVDLARKMFDEMPE--R-DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLS 97 (461)
Q Consensus 21 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 97 (461)
.+...|..|+..|...+++++|..+.+...+ | .+..|..+...+.+.++..++..+ .+..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--------------- 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID--------------- 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh---------------
Confidence 4667888888888888899998888886543 2 334455555577777776665554 3222
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHH
Q 012539 98 ACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKS 174 (461)
Q Consensus 98 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 174 (461)
......++..+..++..+... ..+...+-.|..+|-+.|+.++|..+++++.+ .|+.+.|.+...|+.. +.++|
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 222222222223333333332 12223444566666666666666666666553 3455666666666666 66666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012539 175 LELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM 254 (461)
Q Consensus 175 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 254 (461)
.+++.+.... +....++..+.+++..+.. ..+.+...+..+... +...++.
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~k------------i~~~~~~ 219 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERK------------VLGHREF 219 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHH------------HHhhhcc
Confidence 6666665442 2333445555555555542 111112221111111 1111122
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHh
Q 012539 255 KPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303 (461)
Q Consensus 255 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 303 (461)
..-+.++-.+-..|...++++++..+++.+.+.+|.|..+..-++.+|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2233444455555666666666666666666666666666666666554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00027 Score=65.38 Aligned_cols=209 Identities=11% Similarity=-0.034 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 012539 24 VCQTAMISACAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCG-KSREALHLFHLMQIHDVKLNEVSMVSVLSAC 99 (461)
Q Consensus 24 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 99 (461)
.++..+-..+...+..++|+.+.+++.+. +..+|+.-...+...| ++++++..++++.+.+.+ +..+|+.....+
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 45666777788889999999999987754 4557777777777777 579999999999986533 455677665556
Q ss_pred hccCCH--HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhC---CCh
Q 012539 100 THLGAL--DQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMN---GAG 171 (461)
Q Consensus 100 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~---g~~ 171 (461)
.+.+.. +++..+...+++.. +-+..+|+...-++.+.|++++|++.++++.+ .|..+|+.....+.+. |..
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 666653 67788888888876 56788888888889999999999999999875 4678888887776654 222
Q ss_pred ----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc----CcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHh
Q 012539 172 ----EKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV----GLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGR 238 (461)
Q Consensus 172 ----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 238 (461)
+++++...++.... +-|...|+.+...+... +...+|...+..... ..| +......|++.|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~---~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS---KDSNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc---ccCCcHHHHHHHHHHHHh
Confidence 45677776766642 33566777777666662 344567777766543 233 45666777777764
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.1e-06 Score=66.71 Aligned_cols=120 Identities=9% Similarity=0.040 Sum_probs=76.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 012539 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-P 253 (461)
Q Consensus 176 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 253 (461)
.+|++..+ +.|+. +..+..++...|++++|...|+.... +.| +...+..+..++.+.|++++|...|+.. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444 33443 33455566667777777777776653 233 4566677777777777777777777766 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 012539 254 MKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIY 302 (461)
Q Consensus 254 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 302 (461)
..| +...+..+..++...|+.++|...++.+.+..|+++..+.....+.
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 334 4456777777777777778888888888777777776665555443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=3e-05 Score=66.65 Aligned_cols=116 Identities=12% Similarity=0.038 Sum_probs=67.5
Q ss_pred cCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHH-HHhcCC--HHHH
Q 012539 67 CGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM-YSKCGN--MNKA 143 (461)
Q Consensus 67 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~~~A 143 (461)
.++.++++..+++..+.+ +.|...|..+...+...|+++.|...+++..+.. +.+..++..+..+ |...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 444555555565555543 3355566666666666666666666666666654 3455555555554 345555 3666
Q ss_pred HHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 012539 144 MDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184 (461)
Q Consensus 144 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 184 (461)
.+++++..+ .++.++..+...+.+.|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666665553 24556666666666666666666666666554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0001 Score=64.63 Aligned_cols=309 Identities=11% Similarity=0.004 Sum_probs=175.2
Q ss_pred ccCCchHHHHHHhcCCC-CCHHHHHHHHH--HHHHcCCHHHHHHHHhhCC-CCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 012539 4 ELGCLGYCQKVFDGIHE-PDVVCQTAMIS--ACAKCGDVDLARKMFDEMP-ERDPIAWNAMLAGYAQCGKSREALHLFHL 79 (461)
Q Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 79 (461)
+.+.+.+|++|...+.+ ++...-..-+. ..-+.+++..+..+.++.+ +.+..+.+...-...+.|++++|++-|+.
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 45667778887777664 33322222222 2235788888889999888 45666666666667789999999999998
Q ss_pred HHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-------------ch---------------HHHHHHH
Q 012539 80 MQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM-------------TV---------------TLGTALV 131 (461)
Q Consensus 80 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~---------------~~~~~li 131 (461)
..+-+--.....|+..+.. .+.++.+.|.+...+++++|+.. |+ ..+|.-.
T Consensus 170 AlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 8775433345677766654 45688899999999988877531 11 1122223
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC-----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcH
Q 012539 132 DMYSKCGNMNKAMDFFWGMKER-----NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206 (461)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 206 (461)
..+.+.|+++.|.+.+..|+.+ |++|...+.-.- ..+++.+..+-+.-+...+. -...||..++-.|++..-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHH
Confidence 3456778888888888888854 666655543322 23445555555555555432 3457888888888888888
Q ss_pred HHHHHHHHHhhhhcCC-ccChhHHHHHHHHHH-hcCCHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChHH----HHH
Q 012539 207 EEGREHFDSMRREYGI-EPWLEHYGCLVDLYG-RAGRLDEALDVINKMPMKPHAGAWGALLNA-CRMYKNTEM----GEL 279 (461)
Q Consensus 207 ~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~-~~~~~~~~~----a~~ 279 (461)
+.|-+++.+-..- .. -.+...|+. ++++. ..-..++|++-++.+........-..-+.. -.++.+-++ +.+
T Consensus 327 ~lAADvLAEn~~l-Tyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~ 404 (459)
T KOG4340|consen 327 DLAADVLAENAHL-TYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVN 404 (459)
T ss_pred hHHHHHHhhCcch-hHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 8888777543210 00 112333433 33332 334556666554443100000000011111 112222111 222
Q ss_pred HHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 280 ASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 280 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
-++...++-- .+..+-...|.+..++..+.++|+.-.+
T Consensus 405 ~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 405 EYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 2222222221 1334455667778888888888876544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.4e-05 Score=78.55 Aligned_cols=159 Identities=10% Similarity=0.066 Sum_probs=125.3
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHH
Q 012539 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYG 230 (461)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 230 (461)
.++..+..|.....+.|.+++|..+++...+ +.|| ......+...+.+.+.+++|....++... ..| +.....
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 3578889999999999999999999999988 5777 55667788889999999999999998874 355 467788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCCh
Q 012539 231 CLVDLYGRAGRLDEALDVINKMP-MKPH-AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNW 308 (461)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 308 (461)
.+..++.+.|++++|..+|+++- ..|+ ..+|.++..++...|+.++|...|+++.+...+-...|+.++. +.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~------~~ 232 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV------DL 232 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH------HH
Confidence 88889999999999999999983 3454 5688889999999999999999999999887665556555432 23
Q ss_pred hHHHHHHHHHHhCC
Q 012539 309 DRVINVRQIMKAKG 322 (461)
Q Consensus 309 ~~a~~~~~~m~~~g 322 (461)
..-...++.+.-.+
T Consensus 233 ~~~~~~~~~~~~~~ 246 (694)
T PRK15179 233 NADLAALRRLGVEG 246 (694)
T ss_pred HHHHHHHHHcCccc
Confidence 33444555554333
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00029 Score=68.20 Aligned_cols=259 Identities=14% Similarity=0.085 Sum_probs=165.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 012539 57 WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136 (461)
Q Consensus 57 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 136 (461)
|..++..| ..+++...+.+.+..++. .+-...|.....-.+...|+.++|....+...+.. ..+.+-|..+.-.+-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhh
Confidence 34444444 456777777777777662 22233454444445566777788877777666644 2344556666666666
Q ss_pred cCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHH
Q 012539 137 CGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREH 212 (461)
Q Consensus 137 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 212 (461)
..++++|++.|.... ..|...|.-+.-.-++.|+++.......++.+. .|. ...|..+..++--.|+...|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888887665 346677777776777778888777777777763 444 45566666677777888888888
Q ss_pred HHHhhhhcCCccChhHHHHHH------HHHHhcCCHHHHHHHHHhCC-CCCCHHHH-HHHHHHHHhcCChHHHHHHHHHH
Q 012539 213 FDSMRREYGIEPWLEHYGCLV------DLYGRAGRLDEALDVINKMP-MKPHAGAW-GALLNACRMYKNTEMGELASRKL 284 (461)
Q Consensus 213 ~~~~~~~~~~~p~~~~~~~li------~~~~~~g~~~~A~~~~~~~~-~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~ 284 (461)
.+...+...-.|+...|.-.. ....+.|.+++|.+.+.... ...|-..+ ..-...+.+.+++++|..++..+
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 887766433345555444332 33456788888888776652 11222222 23333477888899999999999
Q ss_pred hhccCCCcchHHHHHHHHh-hcCChhHHHHHHHHHHh
Q 012539 285 VELETKNHGAYVLLSNIYA-ESKNWDRVINVRQIMKA 320 (461)
Q Consensus 285 ~~~~p~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 320 (461)
+..+|++...|..+..++. -.+..+....++....+
T Consensus 246 l~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 246 LERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 9999998878878877775 33333333355555433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00011 Score=72.71 Aligned_cols=164 Identities=15% Similarity=0.074 Sum_probs=96.0
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHH
Q 012539 100 THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER-NVYTWTSVIGGLAMNGAGEKSLELF 178 (461)
Q Consensus 100 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 178 (461)
..+|.+++|+.+|++-.+.. .|-..|-..|.+++|.++-+.-.+- =-.||..-..-+-..++.+.|++.|
T Consensus 811 ieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence 45566666666666655432 2334455566666666654432211 0123333333333344455554444
Q ss_pred HHH----------HHcC---------CCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhc
Q 012539 179 SLM----------KQAG---------VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239 (461)
Q Consensus 179 ~~m----------~~~g---------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 239 (461)
++. .... -..|...|..........|+.+.|+.+|..... |-+++...+-.
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCIQ 951 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEeec
Confidence 431 1110 112444555555566678888888888876642 55677777778
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 012539 240 GRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLV 285 (461)
Q Consensus 240 g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 285 (461)
|+.++|-++-++-+ |......|...|-..|++.+|..+|-++.
T Consensus 952 Gk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 952 GKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred cCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 88888888877754 56666677777888888888888877765
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.6e-05 Score=64.57 Aligned_cols=21 Identities=19% Similarity=-0.015 Sum_probs=8.1
Q ss_pred HHHHHHcCChHHHHHHHHHHH
Q 012539 61 LAGYAQCGKSREALHLFHLMQ 81 (461)
Q Consensus 61 i~~~~~~g~~~~A~~~~~~m~ 81 (461)
...+.+.|++++|...|++..
T Consensus 31 g~~~~~~g~~~~A~~~~~~al 51 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLV 51 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 333333333333333333333
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00027 Score=66.98 Aligned_cols=285 Identities=13% Similarity=0.050 Sum_probs=190.6
Q ss_pred HHHHHcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHhccCCHH
Q 012539 31 SACAKCGDVDLARKMFDEMP---ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE-VSMVSVLSACTHLGALD 106 (461)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~ 106 (461)
.+....|+++.|+.+|-+.. .+|.+.|..=..+|+..|++++|++=-.+-++ +.|+- -.|+-...++.-+|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH
Confidence 45567899999999999754 34778888999999999999999987776666 56765 48999999999999999
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC------------------------------------------------
Q 012539 107 QGRWAHVYIERNRLKMTVTLGTALVDMYSKCG------------------------------------------------ 138 (461)
Q Consensus 107 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g------------------------------------------------ 138 (461)
+|...|..-++.. +.+...++.|.+++.-..
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999999888764 556677777777662110
Q ss_pred ---CHHHHHHHHHhcC----------------CC------------CH----------HHHHHHHHHHHhCCChHHHHHH
Q 012539 139 ---NMNKAMDFFWGMK----------------ER------------NV----------YTWTSVIGGLAMNGAGEKSLEL 177 (461)
Q Consensus 139 ---~~~~A~~~~~~~~----------------~~------------~~----------~~~~~li~~~~~~g~~~~A~~~ 177 (461)
++..|.-.+.... .| |. .-...+.++..+..+++.|++-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 0111111111000 00 00 1234456666667778888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc--C----hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012539 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP--W----LEHYGCLVDLYGRAGRLDEALDVINK 251 (461)
Q Consensus 178 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~----~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (461)
+....... -+..-++....++...|...+....-....+. |-.. + ......+..+|.+.++++.|...|++
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~-gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEV-GRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH-hHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 88877743 33333445555677777666655554444332 2111 0 11222244467777888888888876
Q ss_pred C---CCCCCHHH-------------------------HHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHh
Q 012539 252 M---PMKPHAGA-------------------------WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303 (461)
Q Consensus 252 ~---~~~p~~~~-------------------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 303 (461)
. ...|+... ...=...+.+.|++..|...|.+++..+|+|+..|....-+|.
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~ 403 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYL 403 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 5 11122111 1111234778899999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 012539 304 ESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~ 321 (461)
+.|.+..|.+=-+.-.+.
T Consensus 404 kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 404 KLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHhhHHHHHHHHHHHHhc
Confidence 999999998866655544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00015 Score=73.88 Aligned_cols=143 Identities=13% Similarity=0.129 Sum_probs=117.6
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHH
Q 012539 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--R-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVS 195 (461)
Q Consensus 120 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ 195 (461)
.+.++..+-.|.......|.+++|+.+++...+ | +...+..++..+.+.+++++|+..+++.... .|+ ......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 466688888899999999999999999999874 4 5678888999999999999999999999884 566 455566
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 012539 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM--PMKPHAGAWGALLN 266 (461)
Q Consensus 196 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~ 266 (461)
+..++.+.|+.++|..+|+++... .+-+...+..+...+.+.|+.++|...|++. ...|....|+.++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 677888999999999999999862 2334788999999999999999999999988 33455556555543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0001 Score=63.63 Aligned_cols=151 Identities=13% Similarity=0.072 Sum_probs=69.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcC
Q 012539 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240 (461)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 240 (461)
+-..+...|+-+.+..+..+.... .+.|.......+....+.|++.+|...+++... .-++|...|+.+.-+|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence 333444444444444444443221 111222223344444455555555555554432 33334455555555555555
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHH
Q 012539 241 RLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINV 314 (461)
Q Consensus 241 ~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 314 (461)
++++|..-|.+. .+.| ++...+.|.-.+.-.|+.+.|..++.......+.+...-..|..+....|++++|..+
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 555555544444 2222 2334444444455555555555555555555554444555555555555555555444
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.2e-06 Score=51.84 Aligned_cols=35 Identities=26% Similarity=0.548 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCH
Q 012539 55 IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE 89 (461)
Q Consensus 55 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 89 (461)
.+||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00035 Score=60.40 Aligned_cols=155 Identities=14% Similarity=0.037 Sum_probs=107.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCC
Q 012539 93 VSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNG 169 (461)
Q Consensus 93 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 169 (461)
...-.++...|+-+....+....... .+.+..+.+.++....+.|++..|...|.+... +|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 45555666667666666665554332 245556666677778888888888888887663 46778888888888888
Q ss_pred ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHH
Q 012539 170 AGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248 (461)
Q Consensus 170 ~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 248 (461)
+.++|..-|.+..+. .|+ ...++.+.-.+.-.|+.+.|..++..... .-.-+..+-..+.......|++++|.++
T Consensus 149 r~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l--~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 149 RFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYL--SPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh--CCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 888888888887773 333 55666777777777888888888776643 2223566677777777888888888877
Q ss_pred HHhC
Q 012539 249 INKM 252 (461)
Q Consensus 249 ~~~~ 252 (461)
...-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 6543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00095 Score=67.86 Aligned_cols=158 Identities=16% Similarity=0.263 Sum_probs=117.6
Q ss_pred CCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhh
Q 012539 138 GNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMR 217 (461)
Q Consensus 138 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (461)
+.++.|.+.-++..+ ...|+.+..+-.+.|...+|++-|-+. -|...|..++..+.+.|.+++-..++....
T Consensus 1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445555555554443 457999999999999999999888653 366789999999999999999999988665
Q ss_pred hhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHH
Q 012539 218 REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297 (461)
Q Consensus 218 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 297 (461)
++ .-+|.+. +.||-+|++.+++.+-++++. -||..-...+..-|...|.++.|.-+|..+ +.|.-
T Consensus 1161 kk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~ 1225 (1666)
T KOG0985|consen 1161 KK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAK 1225 (1666)
T ss_pred Hh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHH
Confidence 54 5555544 578899999999988887764 477777778888888888888888777654 45666
Q ss_pred HHHHHhhcCChhHHHHHHHHH
Q 012539 298 LSNIYAESKNWDRVINVRQIM 318 (461)
Q Consensus 298 l~~~~~~~g~~~~a~~~~~~m 318 (461)
|...+...|.+..|...-++.
T Consensus 1226 La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1226 LASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 677777777776666554443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.1e-05 Score=73.05 Aligned_cols=118 Identities=12% Similarity=0.036 Sum_probs=61.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 012539 59 AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138 (461)
Q Consensus 59 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 138 (461)
+|+..+...++++.|+++|+++.+.. |+. ...++..+...++-.+|.+++.+.++.. +.+........+.+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34444444555556666665555532 332 2234444444455555555555555432 334444444555555666
Q ss_pred CHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 012539 139 NMNKAMDFFWGMKE--R-NVYTWTSVIGGLAMNGAGEKSLELFSLM 181 (461)
Q Consensus 139 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 181 (461)
+++.|+++.+++.+ | +..+|..|..+|.+.|+++.|+..++.+
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 66666666665542 2 3345666666666666666666555544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00021 Score=70.03 Aligned_cols=287 Identities=12% Similarity=0.090 Sum_probs=148.9
Q ss_pred cccCCchHHHHHHhcCCC------------CCHH--HHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcC
Q 012539 3 AELGCLGYCQKVFDGIHE------------PDVV--CQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~------------~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 68 (461)
-+..++++|.+.|+++-. |..+ .-.....-+.+.|+++.|..-|-+... .--.+.+.....
T Consensus 672 eki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~-----~~kaieaai~ak 746 (1636)
T KOG3616|consen 672 EKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAK 746 (1636)
T ss_pred HHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhh
Confidence 344567788888876531 2111 112223334455666666555533211 111233444455
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 012539 69 KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148 (461)
Q Consensus 69 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 148 (461)
.+.+|+.+++.++.... -.--|..+...|+..|+++.|.++|.+. + .++-.|+||.+.|+|++|.++-.
T Consensus 747 ew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 747 EWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhccccHHHHHHHHH
Confidence 56666666665554321 2223445555566666666666555432 1 23345566666666666666655
Q ss_pred hcCCC--CHHHHHHHH--------------------------HHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHH
Q 012539 149 GMKER--NVYTWTSVI--------------------------GGLAMNGAGEKSLELFSLMKQAGVRPN--EVTFVSVLR 198 (461)
Q Consensus 149 ~~~~~--~~~~~~~li--------------------------~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~ 198 (461)
+...| .+..|-+-. ..|-++|..+..+++..+- .|+ ..|...+..
T Consensus 816 e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~ 890 (1636)
T KOG3616|consen 816 ECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAK 890 (1636)
T ss_pred HhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHH
Confidence 55443 223333333 3344444444444433332 222 234455566
Q ss_pred HHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---C-CHHHHHHH------HHHH
Q 012539 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK---P-HAGAWGAL------LNAC 268 (461)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---p-~~~~~~~l------l~~~ 268 (461)
-+...|++..|...|-+.. -|.+-+++|...+.+++|.++-+.-+-. . -...|..- +..+
T Consensus 891 e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkll 960 (1636)
T KOG3616|consen 891 ELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLL 960 (1636)
T ss_pred HHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHH
Confidence 6677788888877775442 3566788888888888888887655211 0 11133222 2223
Q ss_pred HhcCChHHHHH-------------HHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 269 RMYKNTEMGEL-------------ASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 269 ~~~~~~~~a~~-------------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
.++|-.+.+.. +.+...+- .-+.+..-+..-+...|++++|.+.+-+..+.+
T Consensus 961 nk~gll~~~id~a~d~~afd~afdlari~~k~--k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 961 NKHGLLEAAIDFAADNCAFDFAFDLARIAAKD--KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HhhhhHHHHhhhhhcccchhhHHHHHHHhhhc--cCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 44444444433 22222221 123456667777889999999988777666544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00014 Score=68.26 Aligned_cols=177 Identities=11% Similarity=0.017 Sum_probs=126.5
Q ss_pred CHHHHHHHHHhcCC------CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHH
Q 012539 139 NMNKAMDFFWGMKE------RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREH 212 (461)
Q Consensus 139 ~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 212 (461)
++.+++..-+.++. ++...+...+.+.........+..++-+-.+. .-...-|.. .-.+...|..++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~-A~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGR-ALQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHH-HHHHHHhcccchHHHH
Confidence 34455555555553 35555666665544333333333333332221 111223333 3345567999999999
Q ss_pred HHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCC
Q 012539 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH-AGAWGALLNACRMYKNTEMGELASRKLVELETK 290 (461)
Q Consensus 213 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 290 (461)
++.+++ ..+-|+.......+.+.+.|+.++|.+.++++ ...|+ ...+-.+..++.+.|++.+|+.+++.....+|.
T Consensus 329 l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 329 LQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 999876 33446777788889999999999999999988 55676 557788888899999999999999999999999
Q ss_pred CcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 291 NHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
++..|..|..+|...|+..++...+.++..
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999999999999998888877654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0021 Score=55.84 Aligned_cols=70 Identities=9% Similarity=0.042 Sum_probs=37.3
Q ss_pred CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhH
Q 012539 241 RLDEALDVINKM--PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310 (461)
Q Consensus 241 ~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 310 (461)
.+.+|.-+|++| ...|+..+.+-...++...+++++|+.+++.+...+++++.+...++.+-...|+-.+
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence 445555555555 1334555555555555555555555555555555555555555555555555555433
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00081 Score=68.35 Aligned_cols=280 Identities=14% Similarity=0.212 Sum_probs=169.1
Q ss_pred CCchHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 012539 6 GCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85 (461)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 85 (461)
+-+++|..+|++- +-+...-+.||. .-++++.|.+.-++..+ +..|..+..+-.+.|...+|++-|-+.
T Consensus 1062 ~LyEEAF~ifkkf-~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika----- 1130 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKF-DMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA----- 1130 (1666)
T ss_pred hHHHHHHHHHHHh-cccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc-----
Confidence 3455666666552 233333344443 23556666665555444 467888888888888888888777542
Q ss_pred CcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------------
Q 012539 86 KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE------------- 152 (461)
Q Consensus 86 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------- 152 (461)
-|+..|..++..+.+.|.+++-...+..+.+...+|.+. +.|+-+|++.+++.+-+++...-..
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~ 1207 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEE 1207 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhh
Confidence 366778888888888888888888888777766666544 4678888888888777665432110
Q ss_pred ----------CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCC
Q 012539 153 ----------RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGI 222 (461)
Q Consensus 153 ----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 222 (461)
.++.-|..|...+...|+++.|.+.-++. .+..||-.+-.+|...+.+..|. | +|+
T Consensus 1208 ~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----i---CGL 1273 (1666)
T KOG0985|consen 1208 KMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----I---CGL 1273 (1666)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----h---cCc
Confidence 13445666666666666666666555443 23456666666676665554332 2 232
Q ss_pred --ccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHh-hccCCCcchHHH
Q 012539 223 --EPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLV-ELETKNHGAYVL 297 (461)
Q Consensus 223 --~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~ 297 (461)
.....-..-|+..|...|-+++-..+++.. +.+. ....|+.|.-.|.+.+ ++...+.++-.- +.+ .--
T Consensus 1274 ~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsRvN------ipK 1346 (1666)
T KOG0985|consen 1274 NIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRVN------IPK 1346 (1666)
T ss_pred eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcc------hHH
Confidence 223444556788888888888888887765 4432 3335555555555543 333333322221 122 123
Q ss_pred HHHHHhhcCChhHHHHHHHHHHh
Q 012539 298 LSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 298 l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
+++++.++.-|.+..=++..-.+
T Consensus 1347 viRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1347 VIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 67777777777777766665443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00012 Score=74.10 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=38.2
Q ss_pred HHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHH
Q 012539 244 EALDVINKM-P-MKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319 (461)
Q Consensus 244 ~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (461)
.|...+.+. . ...+..+|+.|.-. ...|++.-+...|-+....+|.+..+|..+...+....+++.|...|...+
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 444544443 1 12344555555433 444555555555555555555555555555555555555555555555443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.9e-06 Score=50.98 Aligned_cols=34 Identities=38% Similarity=0.691 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 012539 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189 (461)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 189 (461)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3789999999999999999999999999999887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.4e-05 Score=71.45 Aligned_cols=127 Identities=15% Similarity=0.122 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCc
Q 012539 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205 (461)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 205 (461)
...+|+..+...++++.|..+|+++.+.++.....++..+...++..+|++++++.... .+-+......-...|...++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 33456666777888999999999988777777777888888888888999998888764 23345555555666778888
Q ss_pred HHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 012539 206 VEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256 (461)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 256 (461)
.+.|..+.+++.. ..|+ ..+|..|+.+|.+.|+++.|+..++.+|..|
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 8999999888863 4564 5688889999999999999998888887544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00081 Score=63.25 Aligned_cols=147 Identities=15% Similarity=0.123 Sum_probs=117.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-hhHHHH
Q 012539 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFV-SVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHYGC 231 (461)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 231 (461)
....+.-..-.+...|++++|+..++.+... .||..-|. .....+...++.++|.+.++.+.. ..|+ ......
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~ 379 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLN 379 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHH
Confidence 3444555555667789999999999998875 56655444 556678899999999999999974 4665 667778
Q ss_pred HHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChh
Q 012539 232 LVDLYGRAGRLDEALDVINKM--PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309 (461)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 309 (461)
+..+|.+.|++.+|..+++.. ...-|+..|..|-.+|...|+..++... ....|...|+|+
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~ 442 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLE 442 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHH
Confidence 899999999999999999888 3334777999999999999998877644 456678899999
Q ss_pred HHHHHHHHHHhCC
Q 012539 310 RVINVRQIMKAKG 322 (461)
Q Consensus 310 ~a~~~~~~m~~~g 322 (461)
+|...+...+++.
T Consensus 443 ~A~~~l~~A~~~~ 455 (484)
T COG4783 443 QAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHhc
Confidence 9999998887764
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.9e-06 Score=49.82 Aligned_cols=34 Identities=35% Similarity=0.487 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCc
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL 87 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 87 (461)
+.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3588999999999999999999999999988887
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00083 Score=58.20 Aligned_cols=251 Identities=9% Similarity=-0.018 Sum_probs=166.5
Q ss_pred HHHHHcCCHHHHHHHHhhCC-C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHH
Q 012539 31 SACAKCGDVDLARKMFDEMP-E-RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQG 108 (461)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~m~-~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 108 (461)
.-|.-.|++..++..-.... . .++..-.-+-++|...|.+...+.- ... |-.|....+..+......-++.+.-
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchhHHH
Confidence 33444677777766554432 3 3455555667788888876655432 222 2234444444444444444444333
Q ss_pred -HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 012539 109 -RWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR 187 (461)
Q Consensus 109 -~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 187 (461)
..+.+.+.......+......-...|...|++++|.+...... +......=+..+.+..+.+-|.+.+++|.+-
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i--- 166 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI--- 166 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 3445555555545554444555667899999999999998843 4444444455667788899999999999873
Q ss_pred CCHHHHHHHHHHHhh----cCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHH
Q 012539 188 PNEVTFVSVLRGCCV----VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM--PMKPHAGAW 261 (461)
Q Consensus 188 p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~ 261 (461)
-+..|.+-|..++.+ .+.+.+|.-+|++|.. ..+|++.+.+-+..+....|++++|..++++. ....++.+.
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 256677767777654 4578899999999964 47888889999999999999999999999988 323456666
Q ss_pred HHHHHHHHhcC-ChHHHHHHHHHHhhccCCCc
Q 012539 262 GALLNACRMYK-NTEMGELASRKLVELETKNH 292 (461)
Q Consensus 262 ~~ll~~~~~~~-~~~~a~~~~~~~~~~~p~~~ 292 (461)
..++......| +.+...+...++....|..+
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 66666544444 44556677788888777754
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=7e-05 Score=60.23 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHh
Q 012539 226 LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303 (461)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 303 (461)
....-.+...+...|++++|.++|+-+ ...| +...|..|..++...|++++|+..|.++..++|+++.++..+..++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344455666778899999999999988 4445 55588889889999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHh
Q 012539 304 ESKNWDRVINVRQIMKA 320 (461)
Q Consensus 304 ~~g~~~~a~~~~~~m~~ 320 (461)
..|+.+.|.+.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998765
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.5e-05 Score=61.36 Aligned_cols=96 Identities=20% Similarity=0.248 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHh
Q 012539 226 LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303 (461)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 303 (461)
......+...+...|++++|...++.+ ...| +...|..+...+...|+++.|...++++.+.+|+++.++..+..+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344555666666777777777777665 3233 44566666666777777777777777777777777777777777777
Q ss_pred hcCChhHHHHHHHHHHhC
Q 012539 304 ESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~ 321 (461)
..|++++|.+.++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 778888887777766654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00011 Score=59.03 Aligned_cols=91 Identities=11% Similarity=0.057 Sum_probs=45.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhC
Q 012539 92 MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMN 168 (461)
Q Consensus 92 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 168 (461)
...+...+...|++++|...+..+...+ +.+...+..+...|.+.|++++|...|+... ..+...|..+...|...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 3334444445555555555555554443 3344444445555555555555555555443 12344444455555555
Q ss_pred CChHHHHHHHHHHHH
Q 012539 169 GAGEKSLELFSLMKQ 183 (461)
Q Consensus 169 g~~~~A~~~~~~m~~ 183 (461)
|++++|+..|++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.2e-06 Score=48.70 Aligned_cols=33 Identities=33% Similarity=0.618 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 012539 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188 (461)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 188 (461)
.+|+++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.001 Score=57.31 Aligned_cols=165 Identities=15% Similarity=0.117 Sum_probs=104.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC--C---HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 012539 130 LVDMYSKCGNMNKAMDFFWGMKER--N---VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204 (461)
Q Consensus 130 li~~~~~~g~~~~A~~~~~~~~~~--~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 204 (461)
+.-+...+|+.+.|..+++.+..+ + +.-..+ .-+-..|++++|+++|+.+.+.. +.|.+++--=+...-..|
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lka--m~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKA--MLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHH--HHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 333444556666666666655431 1 111111 12334577788888888877764 334556655555555567
Q ss_pred cHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHH-H--hcCChHHHHH
Q 012539 205 LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHA-GAWGALLNAC-R--MYKNTEMGEL 279 (461)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~-~--~~~~~~~a~~ 279 (461)
..-+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++ -..|-. ..+..+...+ . ...+.+.+.+
T Consensus 135 K~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 76778777777765 45667888888899999999999998888888 345543 3444454442 2 2346788899
Q ss_pred HHHHHhhccCCCcchHHHHH
Q 012539 280 ASRKLVELETKNHGAYVLLS 299 (461)
Q Consensus 280 ~~~~~~~~~p~~~~~~~~l~ 299 (461)
.|.+..++.|.+...+..+.
T Consensus 213 yy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 213 YYERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHHHHHHhChHhHHHHHHHH
Confidence 99999999997655444433
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0002 Score=64.32 Aligned_cols=185 Identities=14% Similarity=0.105 Sum_probs=81.1
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCC-------hHHHHHHHHHHHHCCCCcCHH-HHHHHHHHH
Q 012539 28 AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGK-------SREALHLFHLMQIHDVKLNEV-SMVSVLSAC 99 (461)
Q Consensus 28 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~ 99 (461)
.|+--|.+++++++|..+..+....++.-|-.-.-.++..|+ .+-|...|+-.-..+..-|.. --.++.+.+
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 344445566666666666555543333333222222223322 223333333222222222221 122233333
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CHHHHHHH-HHHHHhCCChHHHH
Q 012539 100 THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER---NVYTWTSV-IGGLAMNGAGEKSL 175 (461)
Q Consensus 100 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l-i~~~~~~g~~~~A~ 175 (461)
.-..+++++.-.+..+...-...|...+| +..+++..|++.+|+++|-.+..+ |-.+|-++ ..+|.+.++++.|.
T Consensus 370 FL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHH
Confidence 33445555555555555544444444444 555566666666666666555543 33344333 34555556665555
Q ss_pred HHHHHHHHcCCCCCHHHHHH-HHHHHhhcCcHHHHHHHHHHh
Q 012539 176 ELFSLMKQAGVRPNEVTFVS-VLRGCCVVGLVEEGREHFDSM 216 (461)
Q Consensus 176 ~~~~~m~~~g~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~ 216 (461)
+++-++.. +.+..+... +..-|.+.+.+--|-+.|+.+
T Consensus 449 ~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 449 DMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred HHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 55443321 122222222 223444555555555555544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0013 Score=68.03 Aligned_cols=219 Identities=12% Similarity=0.059 Sum_probs=142.7
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 012539 53 DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVS-MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131 (461)
Q Consensus 53 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 131 (461)
+...|..|+..|...+++++|.++.+...+. .|+... |..+...+.+.++.+.+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 5668888999998999999999988876663 455443 33333344555554444333 233
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHH
Q 012539 132 DMYSKCGNMNKAMDFFWGMKE--RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209 (461)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 209 (461)
+......++.-..-+...|.. .+..++..+..+|-+.|+.++|..+|+++.+.. +-|..+.+.+...++.. ++++|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 333333444333333333332 234477788889999999999999999998864 33577888888888888 89999
Q ss_pred HHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-
Q 012539 210 REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGAWGALLNACRMYKNTEMGELASRKLVEL- 287 (461)
Q Consensus 210 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~- 287 (461)
.+++.++... |....++.++.+++.++ ...|+.. +.-.++.+++...
T Consensus 169 ~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~---------------d~f~~i~~ki~~~~ 217 (906)
T PRK14720 169 ITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDF---------------DFFLRIERKVLGHR 217 (906)
T ss_pred HHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccc---------------hHHHHHHHHHHhhh
Confidence 9988877542 66666888888888877 3334332 2222233333321
Q ss_pred -cCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCC
Q 012539 288 -ETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 288 -~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 323 (461)
...-..++..|-..|...++|+++..+++.+.+...
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~ 254 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN 254 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC
Confidence 112234666777888899999999999999987543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00062 Score=55.44 Aligned_cols=122 Identities=11% Similarity=0.068 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc--hHHHHHHH
Q 012539 57 WNAMLAGYAQCGKSREALHLFHLMQIHDVKLN---EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT--VTLGTALV 131 (461)
Q Consensus 57 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li 131 (461)
|..++..+ ..++...+...++.+..... .+ ......+...+...|++++|...|+.+......+. ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344443 35556666555666655421 11 12222333455556666666666666665542222 12233355
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC--CHHHHHHHHHHHHhCCChHHHHHHHHH
Q 012539 132 DMYSKCGNMNKAMDFFWGMKER--NVYTWTSVIGGLAMNGAGEKSLELFSL 180 (461)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 180 (461)
..+...|++++|+..++....+ ....+..+...|.+.|++++|...|++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5566666666666666554432 223444555556666666666666654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00095 Score=66.45 Aligned_cols=251 Identities=13% Similarity=0.118 Sum_probs=152.1
Q ss_pred CCHHHHHHHHH--HHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 012539 21 PDVVCQTAMIS--ACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA 98 (461)
Q Consensus 21 ~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 98 (461)
-|..|-.++++ .|..-|+++.|.+-.+-+.. -..|..|.+.|++..+.+-|.-.+-.|...
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~a--------------- 786 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNA--------------- 786 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhh---------------
Confidence 35555555553 35556666666555544432 345666666666666665555444444321
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 012539 99 CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF 178 (461)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 178 (461)
.. .+.+++..+.+-+ .-....-.....|.+++|..+|.+.++-| .|=..|-..|.+++|.++-
T Consensus 787 -------Rg-aRAlR~a~q~~~e----~eakvAvLAieLgMlEeA~~lYr~ckR~D-----LlNKlyQs~g~w~eA~eiA 849 (1416)
T KOG3617|consen 787 -------RG-ARALRRAQQNGEE----DEAKVAVLAIELGMLEEALILYRQCKRYD-----LLNKLYQSQGMWSEAFEIA 849 (1416)
T ss_pred -------hh-HHHHHHHHhCCcc----hhhHHHHHHHHHhhHHHHHHHHHHHHHHH-----HHHHHHHhcccHHHHHHHH
Confidence 11 1222333333211 11122333466789999999999877544 4556677889999999987
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhh----------hhc--------CCccChhHHHHHHHHHHhcC
Q 012539 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMR----------REY--------GIEPWLEHYGCLVDLYGRAG 240 (461)
Q Consensus 179 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----------~~~--------~~~p~~~~~~~li~~~~~~g 240 (461)
+.--+-.++ .||..-...+...++.+.|+++|++.. +++ .-..|...|.-....+-..|
T Consensus 850 E~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~G 926 (1416)
T KOG3617|consen 850 ETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVG 926 (1416)
T ss_pred hhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhccc
Confidence 754332232 455555555566777888877776431 110 01123444555555556678
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHH
Q 012539 241 RLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319 (461)
Q Consensus 241 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (461)
+++.|+.+|.... -|-+++...+-.|+.++|.++.++- .|..+...|.+.|...|++.+|...|.+..
T Consensus 927 emdaAl~~Y~~A~------D~fs~VrI~C~qGk~~kAa~iA~es-----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 927 EMDAALSFYSSAK------DYFSMVRIKCIQGKTDKAARIAEES-----GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred chHHHHHHHHHhh------hhhhheeeEeeccCchHHHHHHHhc-----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 8888888877653 3556666667778888887776553 344577889999999999999999887764
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.017 Score=55.21 Aligned_cols=118 Identities=11% Similarity=0.013 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 012539 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM---PMKP-HAGAWGALLNACRMYKNTEMGELAS 281 (461)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 281 (461)
.+....++++++....+.|+ .+|..++..-.+..-+..|..+|.+. +..+ ++.+.++++.-++ .++.+.|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 44455566666554445554 46777888888888899999999888 3334 5667777777655 46788999999
Q ss_pred HHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCcc
Q 012539 282 RKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325 (461)
Q Consensus 282 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 325 (461)
+.-.+..++++..-...+.-+...++-..+..+|++....++.+
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence 99888888877665667777788888888888888888775543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.017 Score=54.21 Aligned_cols=72 Identities=21% Similarity=0.170 Sum_probs=57.5
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHH--HHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHH
Q 012539 246 LDVINKMPMKP----HAGAWGALLNA--CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318 (461)
Q Consensus 246 ~~~~~~~~~~p----~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 318 (461)
..++++.++.| +...-|-|-.+ +..+|++.++...-.-+.+..| ++.+|..+.-+.....++++|..++..+
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 33445555444 34466777777 6789999999988888889999 7889999999999999999999999864
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.4e-05 Score=45.66 Aligned_cols=31 Identities=29% Similarity=0.692 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 012539 55 IAWNAMLAGYAQCGKSREALHLFHLMQIHDV 85 (461)
Q Consensus 55 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 85 (461)
++||+|+++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777888888888888888877777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00018 Score=53.09 Aligned_cols=92 Identities=25% Similarity=0.271 Sum_probs=67.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcC
Q 012539 229 YGCLVDLYGRAGRLDEALDVINKM-PMKPH-AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESK 306 (461)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 306 (461)
+..+...+...|++++|...++++ ...|+ ...+..+...+...++++.|...++...+..|.+..++..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445566667777778777777765 33333 3466666666777788888888888888888877777888888888888
Q ss_pred ChhHHHHHHHHHHh
Q 012539 307 NWDRVINVRQIMKA 320 (461)
Q Consensus 307 ~~~~a~~~~~~m~~ 320 (461)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888877654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0015 Score=53.11 Aligned_cols=114 Identities=15% Similarity=0.123 Sum_probs=49.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC--hhHHHHHHHHHHhcCCH
Q 012539 168 NGAGEKSLELFSLMKQAGVRPN---EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW--LEHYGCLVDLYGRAGRL 242 (461)
Q Consensus 168 ~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~ 242 (461)
.++...+...++.+.... +.+ ......+...+...|++++|...|+.+... ...|+ ......|...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCH
Confidence 555555555555555432 111 112222334445555566666555555543 21111 11223344555555555
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 012539 243 DEALDVINKMPMKP-HAGAWGALLNACRMYKNTEMGELASRK 283 (461)
Q Consensus 243 ~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 283 (461)
++|+..++..+..+ ....+......+...|+.++|...|++
T Consensus 102 d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555555442111 122333333334555555555554443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00042 Score=54.07 Aligned_cols=99 Identities=11% Similarity=0.067 Sum_probs=48.9
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 012539 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH----AGAWGALLNAC 268 (461)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~ 268 (461)
.+...+...|++++|...|..+.....-.+ ....+..+...+.+.|++++|...++.+ ...|+ ..++..+...+
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 344444455555555555555543211101 1223344555555555555555555554 11222 23444555556
Q ss_pred HhcCChHHHHHHHHHHhhccCCCcc
Q 012539 269 RMYKNTEMGELASRKLVELETKNHG 293 (461)
Q Consensus 269 ~~~~~~~~a~~~~~~~~~~~p~~~~ 293 (461)
...|+.+.|...++++.+..|++..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCChh
Confidence 6666666666666666666666543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.1e-05 Score=44.90 Aligned_cols=29 Identities=38% Similarity=0.631 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 012539 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAG 185 (461)
Q Consensus 157 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 185 (461)
+|++||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 67777777777777777777777777665
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.017 Score=49.92 Aligned_cols=180 Identities=12% Similarity=0.091 Sum_probs=118.6
Q ss_pred CChHHHHHHHHHHHH---CC-CCcCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHH
Q 012539 68 GKSREALHLFHLMQI---HD-VKLNEV-SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142 (461)
Q Consensus 68 g~~~~A~~~~~~m~~---~~-~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 142 (461)
.+.++.++++.++.. .| ..|+.. .|..++-+....++.+.|...+.++...- |.+..+-..-.-.+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 345666676666653 23 455554 35556666677788888888888777664 3333333322233445688888
Q ss_pred HHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhh
Q 012539 143 AMDFFWGMKER---NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219 (461)
Q Consensus 143 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (461)
|.++++.+.+. |.+++---+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll- 182 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL- 182 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH-
Confidence 88888887753 4456666666666777777888888777665 667788888888888888888888888888763
Q ss_pred cCCcc-ChhHHHHHHHHHHhcC---CHHHHHHHHHhC
Q 012539 220 YGIEP-WLEHYGCLVDLYGRAG---RLDEALDVINKM 252 (461)
Q Consensus 220 ~~~~p-~~~~~~~li~~~~~~g---~~~~A~~~~~~~ 252 (461)
+.| ++..+..+.+.+--.| +++-|.+.|.+.
T Consensus 183 --~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 183 --IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred --cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344 4555566666654444 455566777665
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.7e-05 Score=56.03 Aligned_cols=77 Identities=16% Similarity=0.196 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHH
Q 012539 240 GRLDEALDVINKM-PMKP---HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVR 315 (461)
Q Consensus 240 g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 315 (461)
|+++.|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4455555555544 1112 233444455555566666666666655 4444444445555566666666666666666
Q ss_pred HH
Q 012539 316 QI 317 (461)
Q Consensus 316 ~~ 317 (461)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 53
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00043 Score=54.00 Aligned_cols=96 Identities=18% Similarity=0.046 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC---cchHHHH
Q 012539 227 EHYGCLVDLYGRAGRLDEALDVINKM-PMKPH----AGAWGALLNACRMYKNTEMGELASRKLVELETKN---HGAYVLL 298 (461)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 298 (461)
.++..++..+.+.|++++|.+.|+.+ ...|+ ...+..+...+...|+++.|...++.+....|.+ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667788899999999999999888 22343 3456667888999999999999999999988775 4568889
Q ss_pred HHHHhhcCChhHHHHHHHHHHhCC
Q 012539 299 SNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 299 ~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
..++.+.|++++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0051 Score=62.81 Aligned_cols=156 Identities=16% Similarity=0.065 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHH--HHHHHHH
Q 012539 126 LGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVT--FVSVLRG 199 (461)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~--~~~ll~~ 199 (461)
.|..|...|...-+...|.+.|+..-+ .|..++......|+....++.|..+.-..-+ ..|- ... |.-..-.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q--ka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ--KAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh--hchHHHHHhhhhhcccc
Confidence 444455555544455555555554332 2344455555555555555555554211111 1111 011 1111223
Q ss_pred HhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH-HHhcCChHH
Q 012539 200 CCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGAWGALLNA-CRMYKNTEM 276 (461)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~-~~~~~~~~~ 276 (461)
|...++...+..-|+... .+.| |...|..+..+|.++|++..|.++|.++ ..+|+...-.-.... .+..|.+.+
T Consensus 572 yLea~n~h~aV~~fQsAL---R~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSAL---RTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred ccCccchhhHHHHHHHHh---cCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence 334444445555444443 2233 3445555555555555555555555444 223332211111111 344455555
Q ss_pred HHHHHHHHhh
Q 012539 277 GELASRKLVE 286 (461)
Q Consensus 277 a~~~~~~~~~ 286 (461)
+...+..+..
T Consensus 649 ald~l~~ii~ 658 (1238)
T KOG1127|consen 649 ALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHH
Confidence 5555554443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.037 Score=51.24 Aligned_cols=110 Identities=11% Similarity=0.134 Sum_probs=85.5
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 012539 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271 (461)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 271 (461)
+.+..+.-|...|....|.++-.+ +++ |+..-|-..+.+|+..+++++-.++... +..+..|..++..|...
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~----Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKE----FKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHH----cCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 445556667778888887777544 344 7888899999999999999998887654 44668899999999999
Q ss_pred CChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHH
Q 012539 272 KNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318 (461)
Q Consensus 272 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 318 (461)
|+..+|..+..++ .+..-+..|.+.|+|.+|.+.--+.
T Consensus 251 ~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 251 GNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999998887772 2356678899999999998775544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.039 Score=56.08 Aligned_cols=214 Identities=15% Similarity=0.148 Sum_probs=115.3
Q ss_pred HcCCHHHHHHHHhhCCCCChh-HHHHHHHH--HHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHH
Q 012539 35 KCGDVDLARKMFDEMPERDPI-AWNAMLAG--YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWA 111 (461)
Q Consensus 35 ~~g~~~~A~~~~~~m~~~~~~-~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 111 (461)
..+++..|....+++.++.+. .|...+.+ ..+.|+.++|..+++.....+.. |..|...+-..|...++.+++..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 345666666666655433221 22233333 34667777777666665554433 666776676777777777777777
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCCHHH----HHHHHHhcCCCCHHHHHHHHHHHHh-CCC---------hHHHHHH
Q 012539 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNK----AMDFFWGMKERNVYTWTSVIGGLAM-NGA---------GEKSLEL 177 (461)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~li~~~~~-~g~---------~~~A~~~ 177 (461)
|+++.... |+......+-.+|++.+++.+ |.++++..+++--..|+.+ +.+.+ ... ..-|.+.
T Consensus 100 Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~-Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI-SLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH-HHHHHhccCCcccccchhHHHHHHH
Confidence 77766643 334454555666666655443 5556665555555555543 22221 111 1235555
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 178 FSLMKQAG-VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 178 ~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
++.+.+.+ ..-+..-...-+......|..++|.+++..-..+.-..-+...-+.-++.+...+++.+..++-.++
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 66665543 1112222222233445678888888888433222122223344455677788888888777666555
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00061 Score=50.09 Aligned_cols=91 Identities=16% Similarity=0.056 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 012539 57 WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136 (461)
Q Consensus 57 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 136 (461)
|..+...+...|++++|+..|++..+.. +.+...+..+...+...++++.|.+.+....+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4445555555666666666666555432 1122344444455555555555555555555443 2223344444555555
Q ss_pred cCCHHHHHHHHHh
Q 012539 137 CGNMNKAMDFFWG 149 (461)
Q Consensus 137 ~g~~~~A~~~~~~ 149 (461)
.|++++|...|..
T Consensus 81 ~~~~~~a~~~~~~ 93 (100)
T cd00189 81 LGKYEEALEAYEK 93 (100)
T ss_pred HHhHHHHHHHHHH
Confidence 5555555555443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0018 Score=59.08 Aligned_cols=134 Identities=11% Similarity=0.150 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHH
Q 012539 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG-CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234 (461)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 234 (461)
.+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467778888888888888889998887542 2234444444333 33356777799999998875 4456677888889
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCc
Q 012539 235 LYGRAGRLDEALDVINKM-PMKPH----AGAWGALLNACRMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
.+.+.|+.+.|..+|++. ..-|. ...|...+.--.+.|+.+...++.+++.+..|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999887 22233 34899999999999999999999999998887743
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00016 Score=50.36 Aligned_cols=64 Identities=22% Similarity=0.181 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcC-ChhHHHHHHHHHHh
Q 012539 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESK-NWDRVINVRQIMKA 320 (461)
Q Consensus 257 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 320 (461)
++.+|..+...+...|++++|+..|+++++.+|+++.+|..+..+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45678888888999999999999999999999999999999999999999 79999999988765
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0031 Score=62.44 Aligned_cols=62 Identities=18% Similarity=0.140 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 259 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
..+.++.-.....|++++|...++++.+++| +..+|..+...+...|+.++|.+.+++....
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444444444445666666666666666665 3445666666666666666666666555443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0019 Score=59.41 Aligned_cols=256 Identities=9% Similarity=-0.015 Sum_probs=159.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 012539 59 AMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138 (461)
Q Consensus 59 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 138 (461)
.....+.+...+..|+..+....+..+. +..-|..-+..+...++++++.--.++-++.. +.........-.++...+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALS 131 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhH
Confidence 3444556666777777777777775422 34445555555566666666554444433321 111223333444444445
Q ss_pred CHHHHHHHHHhcC--------------------CCCHHHHHHH-HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012539 139 NMNKAMDFFWGMK--------------------ERNVYTWTSV-IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197 (461)
Q Consensus 139 ~~~~A~~~~~~~~--------------------~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 197 (461)
+..+|.+.|+.-. +|...+|..+ ..++...|++++|.+.--...+. .++ ..+...+
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~-n~~al~v 208 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL--DAT-NAEALYV 208 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccc-hhHHHHh
Confidence 5555544443211 0122334333 24567788888888877776653 222 1222223
Q ss_pred H--HHhhcCcHHHHHHHHHHhhhhcCCccChhHHH-------------HHHHHHHhcCCHHHHHHHHHhC-CCC-----C
Q 012539 198 R--GCCVVGLVEEGREHFDSMRREYGIEPWLEHYG-------------CLVDLYGRAGRLDEALDVINKM-PMK-----P 256 (461)
Q Consensus 198 ~--~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-------------~li~~~~~~g~~~~A~~~~~~~-~~~-----p 256 (461)
+ ++.-.++.+.|...|++.+ .+.|+-..-. .=..-..+.|++.+|.+.|.+. .+. |
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~ 285 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT 285 (486)
T ss_pred cccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch
Confidence 2 3345678888988888775 4455422211 1123345789999999999887 444 4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 257 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
+...|........+.|+.++|+.-.+.+.+++|.-..+|..-.+++...++|++|.+-++...+..
T Consensus 286 naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 286 NAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455666666678899999999999999999999888889999999999999999999998876643
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0037 Score=57.23 Aligned_cols=118 Identities=16% Similarity=0.131 Sum_probs=59.2
Q ss_pred HHhhc-CcHHHHHHHHHHhhhhcCCccC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC---CC-C----CHH-HHHHH
Q 012539 199 GCCVV-GLVEEGREHFDSMRREYGIEPW----LEHYGCLVDLYGRAGRLDEALDVINKMP---MK-P----HAG-AWGAL 264 (461)
Q Consensus 199 ~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~-p----~~~-~~~~l 264 (461)
.|... |++++|.+.|+....-+..... ...+..+...+.+.|++++|.++|++.. .. + +.. .+-..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 44444 5666666666655442221111 2345556667777778888877777651 11 1 111 22222
Q ss_pred HHHHHhcCChHHHHHHHHHHhhccCCCc-----chHHHHHHHHhh--cCChhHHHHHHH
Q 012539 265 LNACRMYKNTEMGELASRKLVELETKNH-----GAYVLLSNIYAE--SKNWDRVINVRQ 316 (461)
Q Consensus 265 l~~~~~~~~~~~a~~~~~~~~~~~p~~~-----~~~~~l~~~~~~--~g~~~~a~~~~~ 316 (461)
+-++...||...|...+++....+|.-. .....|+.+|-. ...++++..-|+
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYD 261 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Confidence 3345566788888888888877776421 233445555532 233444444443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.002 Score=54.22 Aligned_cols=130 Identities=12% Similarity=0.014 Sum_probs=82.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHH
Q 012539 53 DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN--EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTAL 130 (461)
Q Consensus 53 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 130 (461)
....+..+...+...|++++|+..|++.......+. ...+..+...+...|++++|...+.+.++.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 455677788888888888888888888876433332 3567777777888888888888888887754 3345566667
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 012539 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204 (461)
Q Consensus 131 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 204 (461)
..+|...|+...+..-++... ..+++|.+.+++.... .|+. +..++.-+...|
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~-----------------~~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~ 165 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAE-----------------ALFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHH-----------------HHHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcC
Confidence 777777776655543332211 1245677777776653 3443 444444444433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.037 Score=56.18 Aligned_cols=223 Identities=12% Similarity=0.035 Sum_probs=150.8
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH--hccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH
Q 012539 64 YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSAC--THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN 141 (461)
Q Consensus 64 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 141 (461)
....+++.+|+....++.+. .|+.. |..++.++ .+.|..++|..+++.....+.. |..+...+-.+|...|+.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 34567899999999988875 34443 44555554 6889999999888776665533 7888899999999999999
Q ss_pred HHHHHHHhcCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC----------cHHHH
Q 012539 142 KAMDFFWGMKE--RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG----------LVEEG 209 (461)
Q Consensus 142 ~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----------~~~~a 209 (461)
+|..+|+...+ |+......+..+|.+.+.+.+-.+.--+|.+. .+-+...|-++++...+.- -+.-|
T Consensus 95 ~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 95 EAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 99999999885 55566666777888887775544443333332 4445677777777665431 13456
Q ss_pred HHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHh-C-CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 012539 210 REHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK-M-PMKP--HAGAWGALLNACRMYKNTEMGELASRKLV 285 (461)
Q Consensus 210 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~-~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 285 (461)
.+.++.+.++.|-.-+..-.......+...|.+++|++++.. . ..-+ +...-+--+..+...+++.+..++..++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 677777776543212222222333455678889999998832 2 1112 33344455566788888888888888888
Q ss_pred hccCCC
Q 012539 286 ELETKN 291 (461)
Q Consensus 286 ~~~p~~ 291 (461)
+.+++|
T Consensus 254 ~k~~Dd 259 (932)
T KOG2053|consen 254 EKGNDD 259 (932)
T ss_pred HhCCcc
Confidence 888887
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0016 Score=52.44 Aligned_cols=106 Identities=13% Similarity=0.076 Sum_probs=69.2
Q ss_pred HHHHhhCC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 012539 43 RKMFDEMP-ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121 (461)
Q Consensus 43 ~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 121 (461)
+..+..+. +.+......+...+.+.|++++|..+|+.+...+ +-+..-|..+..++-..|++++|...|....... +
T Consensus 23 l~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ 100 (157)
T PRK15363 23 LRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-I 100 (157)
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 34444455 4555566666666777777777777777776643 2244455666666677777777777777777765 3
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 012539 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGM 150 (461)
Q Consensus 122 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 150 (461)
.++..+-.+..+|.+.|+.+.|++.|+..
T Consensus 101 ddp~~~~~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 101 DAPQAPWAAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555555777777777777777777644
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0094 Score=51.73 Aligned_cols=168 Identities=11% Similarity=-0.005 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCCC--C--------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHH
Q 012539 25 CQTAMISACAKCGDVDLARKMFDEMPER--D--------PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVS 94 (461)
Q Consensus 25 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 94 (461)
-|++|+..+.-..-+++-+..|+.-..+ . ...-+.++..+.-.|.+.-.+.++.+.++...+.++.....
T Consensus 138 pqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~ 217 (366)
T KOG2796|consen 138 PQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSG 217 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHH
Confidence 3566666666555555555555543321 2 23446677777778888888899999888776668888888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCchH-----HHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHH
Q 012539 95 VLSACTHLGALDQGRWAHVYIERNRLKMTVT-----LGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLA 166 (461)
Q Consensus 95 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 166 (461)
+.+.-.+.|+.+.|...++...+..-..+.. +.......|.-.+++..|...|++++. .|++.-|.-.-+..
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 8888889999999999998777644333333 333344456667888888888888774 45666666666666
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 012539 167 MNGAGEKSLELFSLMKQAGVRPNEVTFV 194 (461)
Q Consensus 167 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 194 (461)
-.|+..+|++.++.|... .|...+-+
T Consensus 298 Ylg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 678889999999998874 45444433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0077 Score=55.14 Aligned_cols=132 Identities=13% Similarity=0.197 Sum_probs=67.2
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-----CHH
Q 012539 127 GTALVDMYSKC-GNMNKAMDFFWGMKE-----RN----VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP-----NEV 191 (461)
Q Consensus 127 ~~~li~~~~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~ 191 (461)
+..+...|-.. |++++|.+.|++..+ .. ...+..+...+.+.|++++|+++|++....-... +..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 34455556665 677777666665542 11 2345556667777778888888887776532221 111
Q ss_pred -HHHHHHHHHhhcCcHHHHHHHHHHhhhhc-CCccC--hhHHHHHHHHHHh--cCCHHHHHHHHHhCCCCCCHH
Q 012539 192 -TFVSVLRGCCVVGLVEEGREHFDSMRREY-GIEPW--LEHYGCLVDLYGR--AGRLDEALDVINKMPMKPHAG 259 (461)
Q Consensus 192 -~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~p~~~ 259 (461)
.|...+-++...|+...|...++...... ++..+ ......|+.+|-. ...+++|..-|+.+. +.|..
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w 269 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNW 269 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS----HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHH
Confidence 22233334555677777777777664221 22222 2344455555543 245666666666664 33443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0035 Score=48.67 Aligned_cols=109 Identities=13% Similarity=0.098 Sum_probs=70.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--chHHHHHHHHH
Q 012539 58 NAMLAGYAQCGKSREALHLFHLMQIHDVKLN--EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM--TVTLGTALVDM 133 (461)
Q Consensus 58 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~ 133 (461)
-.+..++-..|+.++|+.+|++....|+... ...+..+.+.+...|++++|..+++........+ +..+...+..+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 3455667778888888888888888776544 2356667777888888888888888777653210 22222334445
Q ss_pred HHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 012539 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLA 166 (461)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 166 (461)
+...|+.++|.+.+-...-++...|.--|..|+
T Consensus 85 L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777776555455555555554443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00015 Score=52.73 Aligned_cols=80 Identities=11% Similarity=0.061 Sum_probs=31.5
Q ss_pred cCChHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 012539 67 CGKSREALHLFHLMQIHDVK-LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145 (461)
Q Consensus 67 ~g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 145 (461)
+|+++.|+.+|+++.+.... |+...+..+..++.+.|++++|..+++. .+.+. .+....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 34555555555555543221 1222233344444444444444444444 21111 111222233444444455555444
Q ss_pred HHH
Q 012539 146 FFW 148 (461)
Q Consensus 146 ~~~ 148 (461)
+|+
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0019 Score=48.36 Aligned_cols=81 Identities=11% Similarity=-0.051 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHhccC--------CHHHHHHHHHHHHHcCCCCchHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDV-KLNEVSMVSVLSACTHLG--------ALDQGRWAHVYIERNRLKMTVTL 126 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 126 (461)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 444567777778999999999999999999 999999999999876553 24456788899999999999999
Q ss_pred HHHHHHHHHh
Q 012539 127 GTALVDMYSK 136 (461)
Q Consensus 127 ~~~li~~~~~ 136 (461)
|+.++....+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887664
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00061 Score=62.54 Aligned_cols=257 Identities=11% Similarity=0.057 Sum_probs=155.4
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHhccCCHHHHHHHHHHHHH----cCC-CCchHHHHHHHHH
Q 012539 63 GYAQCGKSREALHLFHLMQIHDVKLNE----VSMVSVLSACTHLGALDQGRWAHVYIER----NRL-KMTVTLGTALVDM 133 (461)
Q Consensus 63 ~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~ 133 (461)
-+++.|+....+.+|+..++.|.. |. ..|..+.++|.-++++++|.++|..=+. .|- .-.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 356777777778888777776632 33 3455666677777777777777653211 010 0011122235555
Q ss_pred HHhcCCHHHHHHHHHhcC-------CC--CHHHHHHHHHHHHhCCC--------------------hHHHHHHHHHHH--
Q 012539 134 YSKCGNMNKAMDFFWGMK-------ER--NVYTWTSVIGGLAMNGA--------------------GEKSLELFSLMK-- 182 (461)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~-- 182 (461)
+--.|.+++|.-.-.+-. .+ ...++..+...|...|+ ++.|.+.|.+=.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 566677777754432211 11 12344445555544331 233444443321
Q ss_pred --HcCCC-CCHHHHHHHHHHHhhcCcHHHHHHHHHHh---hhhcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC---
Q 012539 183 --QAGVR-PNEVTFVSVLRGCCVVGLVEEGREHFDSM---RREYGIEPW-LEHYGCLVDLYGRAGRLDEALDVINKM--- 252 (461)
Q Consensus 183 --~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~--- 252 (461)
+.|-. .-...|..|.+.|.-.|+++.|...++.- .+++|-... ...+..+..++.-.|+++.|.+.|+..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 11100 01234556666666678999998877642 234454433 457888899999999999999888764
Q ss_pred ----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc----c--CCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 253 ----PM-KPHAGAWGALLNACRMYKNTEMGELASRKLVEL----E--TKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 253 ----~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
+. .....+..+|...|.-..+++.|+.++.+-..+ + .....++.+|.++|...|..++|..+.+.-.+
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 21 234457778888888888999999888775532 2 22456899999999999999999887766543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0027 Score=53.20 Aligned_cols=81 Identities=7% Similarity=-0.069 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL--NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 131 (461)
...|..+...+...|++++|+..|++.......| ...++..+...+...|+.++|...+....+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4467777777778888888888888776643222 12466777777777788888887777777653 33344455555
Q ss_pred HHHH
Q 012539 132 DMYS 135 (461)
Q Consensus 132 ~~~~ 135 (461)
..|.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0012 Score=55.63 Aligned_cols=94 Identities=13% Similarity=0.017 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHH
Q 012539 227 EHYGCLVDLYGRAGRLDEALDVINKM-PMKPH----AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301 (461)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 301 (461)
..+..+...+...|++++|...|++. ...|+ ...+..+...+...|+++.|...++++.+..|.+...+..+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555566666666777766666655 11222 24666666677777888888888888888778777777777777
Q ss_pred HhhcCC--------------hhHHHHHHHHHHh
Q 012539 302 YAESKN--------------WDRVINVRQIMKA 320 (461)
Q Consensus 302 ~~~~g~--------------~~~a~~~~~~m~~ 320 (461)
|...|+ +++|.+++++...
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 777665 4556666655544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00063 Score=64.40 Aligned_cols=103 Identities=17% Similarity=0.125 Sum_probs=84.3
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 012539 196 VLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYK 272 (461)
Q Consensus 196 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~ 272 (461)
-...+...|++++|...|..+++. .| +...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 345667789999999999998753 44 5778888899999999999999999888 4455 4557888888899999
Q ss_pred ChHHHHHHHHHHhhccCCCcchHHHHHHH
Q 012539 273 NTEMGELASRKLVELETKNHGAYVLLSNI 301 (461)
Q Consensus 273 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 301 (461)
++++|...++++.+++|.+......+..+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999988666555444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00032 Score=48.12 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=46.0
Q ss_pred HHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 265 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
...+...|++++|...|+.+.+..|.++..+..+..++...|++++|...+++..+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345777888888888888888888888888888888888888888888888887654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0011 Score=58.80 Aligned_cols=106 Identities=18% Similarity=0.094 Sum_probs=87.1
Q ss_pred ccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH-Hh--cCChHHHHHHHHHHhhccCCCcchHHH
Q 012539 223 EPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMK-PHAGAWGALLNAC-RM--YKNTEMGELASRKLVELETKNHGAYVL 297 (461)
Q Consensus 223 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~-~~--~~~~~~a~~~~~~~~~~~p~~~~~~~~ 297 (461)
+-|...|..|...|...|+++.|..-|.+. .+. +++..+..+..++ .+ .....++..+++++...+|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 447899999999999999999999999887 333 3455666666663 22 334678999999999999999999999
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhCCCccCCc
Q 012539 298 LSNIYAESKNWDRVINVRQIMKAKGVKKLPG 328 (461)
Q Consensus 298 l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 328 (461)
|...+...|++.+|...|+.|.+......|.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 9999999999999999999999876654443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.038 Score=53.04 Aligned_cols=123 Identities=11% Similarity=0.161 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 012539 126 LGTALVDMYSKCGNMNKAMDFFWGMKE-----RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRG 199 (461)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~ 199 (461)
+|..+++.-.+..-+..|+.+|.+..+ .++...++++.-|| .++.+-|.++|+-=.+. -+| ..--...+..
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~Yldf 444 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDF 444 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHH
Confidence 344455555555555666666655542 14455555555554 34555666666543321 122 2222344555
Q ss_pred HhhcCcHHHHHHHHHHhhhhcCCccC--hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 200 CCVVGLVEEGREHFDSMRREYGIEPW--LEHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
+.+.++-..++.+|++.+.. ++.|+ ...|..+++-=..-|++..+.++-+++
T Consensus 445 L~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 55666666666666666554 45543 456666666666666666666655444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0097 Score=57.98 Aligned_cols=207 Identities=14% Similarity=0.106 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCC-C----------CChhHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCcCHHH
Q 012539 25 CQTAMISACAKCGDVDLARKMFDEMP-E----------RDPIAWNAMLAGYAQCGK--SREALHLFHLMQIHDVKLNEVS 91 (461)
Q Consensus 25 ~~~~li~~~~~~g~~~~A~~~~~~m~-~----------~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~t 91 (461)
.+.+=+.-|...|.+++|.++=---. . -+..-++..=.+|.+..+ +-+.+.-+++|++.|-.|+...
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL 637 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL 637 (1081)
T ss_pred cccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH
Confidence 34444445566666666655411100 0 122234444455655544 3445555677888887788764
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------------CHHH
Q 012539 92 MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER--------------NVYT 157 (461)
Q Consensus 92 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------------~~~~ 157 (461)
. ...|+-.|.+.+|.++|.+ .|.+ |..+.+|.....++.|.++...-... |+.-
T Consensus 638 l---A~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~ke 705 (1081)
T KOG1538|consen 638 L---ADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKE 705 (1081)
T ss_pred H---HHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCC
Confidence 3 3456667888888888753 4422 34566777777777777766543211 1111
Q ss_pred HHHHHHHHHhCCChHHHHHHHHH------HHHcCCC---CCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhH
Q 012539 158 WTSVIGGLAMNGAGEKSLELFSL------MKQAGVR---PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEH 228 (461)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~------m~~~g~~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 228 (461)
=.+....+...|+.++|+.+.-+ +.+-+-+ .+..+...+...+.+...+..|-++|..|-.
T Consensus 706 PkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------- 775 (1081)
T KOG1538|consen 706 PKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------- 775 (1081)
T ss_pred cHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc----------
Confidence 11233444556666666654321 1221212 2334444444455566777778888877732
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC
Q 012539 229 YGCLVDLYGRAGRLDEALDVINKMP 253 (461)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~~~ 253 (461)
..+++++....+++++|..+-++.|
T Consensus 776 ~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 776 LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HHHHhhheeecccchHhHhhhhhCc
Confidence 2357788888888999988888884
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0044 Score=56.54 Aligned_cols=127 Identities=11% Similarity=0.043 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 012539 55 IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA-CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133 (461)
Q Consensus 55 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 133 (461)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356667777777777777777777776432 2233333333333 22345566677777777765 35566667777777
Q ss_pred HHhcCCHHHHHHHHHhcCCC------CHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 134 YSKCGNMNKAMDFFWGMKER------NVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
+.+.|+.+.|+.+|++.... -...|...+.-=.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777766531 234666666666666777777777666665
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0022 Score=48.05 Aligned_cols=81 Identities=15% Similarity=0.146 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhhcC--------cHHHHHHHHHHhhhhcCCccChh
Q 012539 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAGV-RPNEVTFVSVLRGCCVVG--------LVEEGREHFDSMRREYGIEPWLE 227 (461)
Q Consensus 157 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~ 227 (461)
+-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+..+.. .+-+.+.+|+.|+.. +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 444556666777999999999999999999 899999999998876532 345667888888865 8899999
Q ss_pred HHHHHHHHHHh
Q 012539 228 HYGCLVDLYGR 238 (461)
Q Consensus 228 ~~~~li~~~~~ 238 (461)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99888877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0014 Score=54.97 Aligned_cols=93 Identities=10% Similarity=-0.171 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHH
Q 012539 226 LEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH----AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300 (461)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 300 (461)
...+..++..+...|++++|...|++. ...|+ ..+|..+...+...|+.++|...++++....|....++..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666777777888888888888776 22232 2377888888999999999999999999998888888888888
Q ss_pred HHh-------hcCChhHHHHHHHHH
Q 012539 301 IYA-------ESKNWDRVINVRQIM 318 (461)
Q Consensus 301 ~~~-------~~g~~~~a~~~~~~m 318 (461)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 887 778888666666544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0019 Score=61.17 Aligned_cols=102 Identities=10% Similarity=0.099 Sum_probs=82.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhc
Q 012539 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRA 239 (461)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 239 (461)
....+...|++++|++.|++..+.. +-+...|..+..++...|++++|...++.++. +.| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3456778899999999999998853 33467788888899999999999999999875 345 577888999999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 012539 240 GRLDEALDVINKM-PMKPHAGAWGALLN 266 (461)
Q Consensus 240 g~~~~A~~~~~~~-~~~p~~~~~~~ll~ 266 (461)
|++++|...|++. ...|+......++.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999987 55666555444443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0014 Score=62.43 Aligned_cols=114 Identities=10% Similarity=0.037 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhCCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 012539 23 VVCQTAMISACAKCGDVDLARKMFDEMPER------DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL 96 (461)
Q Consensus 23 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 96 (461)
......+++.+.+..+++.+..++-+.... -..+..++++.|...|..++++++++.=...|+-||.+|++.++
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 334444555555555566666655554321 12244567777777777777777777666677777777777777
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 012539 97 SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136 (461)
Q Consensus 97 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 136 (461)
+.+.+.|++..|.++...|...+...+..++..-+..+.+
T Consensus 146 d~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 146 DHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 7777777777777777766665555555554433333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.035 Score=45.76 Aligned_cols=98 Identities=11% Similarity=-0.012 Sum_probs=49.9
Q ss_pred CcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCHHHHHH
Q 012539 86 KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-----RNVYTWTS 160 (461)
Q Consensus 86 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 160 (461)
-|+...-..+..+....|+..+|...|++...--+-.|..+...+.++....++...|...++.+-+ +++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3444444455555555555555555555555444444555555555555555555555555554432 12223333
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 012539 161 VIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
+...|...|++.+|...|+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 44455555555555555555544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.047 Score=48.61 Aligned_cols=190 Identities=12% Similarity=0.018 Sum_probs=106.7
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHH--HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHH
Q 012539 51 ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEV--SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT 128 (461)
Q Consensus 51 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 128 (461)
+.++..+-.....+.+.|++++|.+.|+++...-..+... ....+..++.+.+++++|...+++.++........-+.
T Consensus 29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 3455555566677778889999999998888753322111 12345577788889999999998888764332222222
Q ss_pred HHHHHHH--hcC---------------CHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH
Q 012539 129 ALVDMYS--KCG---------------NMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEV 191 (461)
Q Consensus 129 ~li~~~~--~~g---------------~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 191 (461)
..+.+.+ ..+ +...+.+.++ .+..+|.-|-...-..+|...+..+... .-..
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~--------~~~~li~~yP~S~ya~~A~~rl~~l~~~---la~~ 177 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR--------DFSKLVRGYPNSQYTTDATKRLVFLKDR---LAKY 177 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH--------HHHHHHHHCcCChhHHHHHHHHHHHHHH---HHHH
Confidence 2222221 111 2222222111 2333444444444445555544444321 0111
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
.+ .+...|.+.|.+..|..-++.+++++.-.| .......++.+|...|..++|.+....+
T Consensus 178 e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 178 EL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11 455667777777777777777777654444 3456667777888888888877766544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00061 Score=60.19 Aligned_cols=97 Identities=20% Similarity=0.203 Sum_probs=77.4
Q ss_pred HHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChH
Q 012539 199 GCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAG-AWGALLNACRMYKNTE 275 (461)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~ 275 (461)
-..+.+++++|...|...+ .+.| |+..|..=..+|.+.|.++.|.+-.+.. .+.|... +|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 3566789999999999887 4566 4666777788999999999998877766 5556544 8899999999999999
Q ss_pred HHHHHHHHHhhccCCCcchHHHH
Q 012539 276 MGELASRKLVELETKNHGAYVLL 298 (461)
Q Consensus 276 ~a~~~~~~~~~~~p~~~~~~~~l 298 (461)
+|++.|++.++++|++......|
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHH
Confidence 99999999999999987333333
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.089 Score=46.85 Aligned_cols=177 Identities=11% Similarity=0.100 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHH---HHHHHHHHhcCCHHHHHHHHHhcCC--CC--HHHHHH
Q 012539 88 NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG---TALVDMYSKCGNMNKAMDFFWGMKE--RN--VYTWTS 160 (461)
Q Consensus 88 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~ 160 (461)
+...+-.....+...|++++|...|+.+...-..+ .... -.++.+|.+.+++++|...|++..+ |+ -..|..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 33333344455567899999999999998864332 3332 3467888999999999999988764 21 122222
Q ss_pred HHHHHH--hCC---------------C---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhc
Q 012539 161 VIGGLA--MNG---------------A---GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREY 220 (461)
Q Consensus 161 li~~~~--~~g---------------~---~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (461)
.+.+.+ ..+ + ..+|++.|+++.+. -|+ +.-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHH-
Confidence 222222 111 1 23455666666553 333 22234444433333221
Q ss_pred CCccChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 012539 221 GIEPWLEHYGCLVDLYGRAGRLDEALDVINKM----PMKP-HAGAWGALLNACRMYKNTEMGELASRKLV 285 (461)
Q Consensus 221 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 285 (461)
+ ...--.+...|.+.|.+..|..=++.+ |..| .......+..+|...|..++|..+...+.
T Consensus 174 -l---a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 -L---AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -H---HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0 112235667788888888777766666 4333 33366778888999999999988776654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00094 Score=45.74 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=43.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCc
Q 012539 232 LVDLYGRAGRLDEALDVINKM-PMKPH-AGAWGALLNACRMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
+...+.+.|++++|...|+++ ...|+ ...|..+..++...|++++|...++++.+..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 345677778888888888777 44454 34777777778888888888888888888888763
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.016 Score=57.52 Aligned_cols=68 Identities=16% Similarity=0.165 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH
Q 012539 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGA 260 (461)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 260 (461)
...|..+.-.....|++++|...++++.. +.|+...|..+...+...|+.++|.+.+++. ...|...+
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 34444444444445666666666666542 3455566666666666666666666666554 33444333
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00036 Score=48.33 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=43.1
Q ss_pred HhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 269 RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 269 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
...|++++|...++++.+..|++...+..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45688888888888888888888888888888888888888888888876553
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.16 Score=47.12 Aligned_cols=104 Identities=15% Similarity=0.074 Sum_probs=53.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHh
Q 012539 159 TSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238 (461)
Q Consensus 159 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 238 (461)
+..|.-+...|+...|.++-.+.. .||..-|..-+.+++..+++++-..+-.. .-++.-|...++.+.+
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHH
Confidence 333444455566555555544442 34555555556666666666655543321 1123455556666666
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 012539 239 AGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELA 280 (461)
Q Consensus 239 ~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 280 (461)
.|+..+|..++..++. ..-+..|.+.|++.+|.+.
T Consensus 250 ~~~~~eA~~yI~k~~~-------~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 250 YGNKKEASKYIPKIPD-------EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCCHHHHHHHHHhCCh-------HHHHHHHHHCCCHHHHHHH
Confidence 6666666666655321 2233344555555555444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0028 Score=56.12 Aligned_cols=99 Identities=20% Similarity=0.329 Sum_probs=77.6
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcC
Q 012539 163 GGLAMNGAGEKSLELFSLMKQAGVRP-NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAG 240 (461)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 240 (461)
.-+.+.+++++|+..|.+.++. .| |.+-|..=..+|++.|..+.|.+-.+..+ .+.|. ..+|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 4467788999999999999884 54 46666677888999999999988777665 45664 678899999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 012539 241 RLDEALDVINKM-PMKPHAGAWGALLN 266 (461)
Q Consensus 241 ~~~~A~~~~~~~-~~~p~~~~~~~ll~ 266 (461)
++++|.+.|++. .+.|+-.+|-.=|.
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 999999998887 77787776644433
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0082 Score=57.28 Aligned_cols=119 Identities=10% Similarity=0.083 Sum_probs=73.3
Q ss_pred CCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCHHHH
Q 012539 85 VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN--RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE----RNVYTW 158 (461)
Q Consensus 85 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~ 158 (461)
.+.+......+++.+....+++.+..++-..... ....-..+..+++..|.+.|..+++..+++.=.. ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445666666666666666667776666665543 1112233445677777777777777776665443 566777
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 012539 159 TSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203 (461)
Q Consensus 159 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 203 (461)
|.|+..+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777766555555556655555555443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0036 Score=53.03 Aligned_cols=96 Identities=10% Similarity=0.099 Sum_probs=69.1
Q ss_pred HHHHhhC--CCCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcc-------------
Q 012539 43 RKMFDEM--PERDPIAWNAMLAGYAQC-----GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHL------------- 102 (461)
Q Consensus 43 ~~~~~~m--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~------------- 102 (461)
...|+.. ..+|-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455554 456777777777777654 55666677778888888888888888888876442
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 012539 103 ---GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138 (461)
Q Consensus 103 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 138 (461)
.+-+-|..++++|...|+-||..++..|++.+++.+
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 234567788888888888888888888888776654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0038 Score=52.90 Aligned_cols=97 Identities=16% Similarity=0.203 Sum_probs=70.3
Q ss_pred HHHHHhc--CCCCHHHHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc-------------
Q 012539 144 MDFFWGM--KERNVYTWTSVIGGLAMN-----GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV------------- 203 (461)
Q Consensus 144 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~------------- 203 (461)
...|+.. ..+|..+|..++..|.+. |..+=....++.|.+.|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3455555 356777777777777653 56677777778888888888888888888765332
Q ss_pred ---CcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCC
Q 012539 204 ---GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241 (461)
Q Consensus 204 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 241 (461)
.+-+-|.+++++|.. +|+.||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 245668888888854 5888888888888888877764
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0013 Score=46.21 Aligned_cols=58 Identities=5% Similarity=0.014 Sum_probs=49.9
Q ss_pred HHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCC
Q 012539 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 266 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 323 (461)
..+.+.++++.|..+++++...+|.++..+.....++.+.|++++|.+.++...+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4577888999999999999999999988999999999999999999999988876543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0063 Score=49.39 Aligned_cols=89 Identities=11% Similarity=0.036 Sum_probs=75.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChh
Q 012539 232 LVDLYGRAGRLDEALDVINKM-PMK-PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309 (461)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 309 (461)
...-+-..|++++|..+|+-+ -.. -+..-|..|..++...++++.|...|.....+.++|+.++.....+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 334456789999999999877 222 355678888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 012539 310 RVINVRQIMKA 320 (461)
Q Consensus 310 ~a~~~~~~m~~ 320 (461)
.|+..|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999987765
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.25 Score=45.73 Aligned_cols=281 Identities=16% Similarity=0.158 Sum_probs=172.7
Q ss_pred HHHHHHHHH--HcCCHHHHHHHHhhCC---CCChhHHHHHHH--HHHHcCChHHHHHHHHHHHHCCCCcCHH--HHHHHH
Q 012539 26 QTAMISACA--KCGDVDLARKMFDEMP---ERDPIAWNAMLA--GYAQCGKSREALHLFHLMQIHDVKLNEV--SMVSVL 96 (461)
Q Consensus 26 ~~~li~~~~--~~g~~~~A~~~~~~m~---~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~--t~~~ll 96 (461)
|.+|-.++. -.|+-..|.++-.+.. ..|....-.|+. +-.-.|+++.|.+-|+.|... |... -...|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence 444444433 3466666666655433 335444444443 334568888888888888762 2222 233344
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCHH--HHHHHHHHHH---
Q 012539 97 SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-----ERNVY--TWTSVIGGLA--- 166 (461)
Q Consensus 97 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~--- 166 (461)
-...+.|..+.|+++-+..-... +.-...+.+.+...+..|+++.|+++.+.-. ++++. .-..|+.+-+
T Consensus 162 leAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 44467788888888777766543 3334566778888888899999988888654 34442 2223333222
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHH--
Q 012539 167 MNGAGEKSLELFSLMKQAGVRPNEVT-FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD-- 243 (461)
Q Consensus 167 ~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~-- 243 (461)
-..+...|...-.+..+ +.||..- -..-..++.+.|++.++-.+++.+.+. .|.+..+...+ +.+.|+-.
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdta~d 313 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDTALD 313 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCcHHH
Confidence 13345666666555544 5677432 233456788889999999999888753 56555443333 44555422
Q ss_pred HHHH--HHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhh-cCChhHHHHHHHHHH
Q 012539 244 EALD--VINKMPMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAE-SKNWDRVINVRQIMK 319 (461)
Q Consensus 244 ~A~~--~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~ 319 (461)
...+ -++.| +| +..+-..+..+....|++..|..-.+.+....|.. ..|..|...-.. .|+-.++...+.+-.
T Consensus 314 RlkRa~~L~sl--k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 314 RLKRAKKLESL--KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHHhc--CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 1111 12333 44 44466667777888899999988888888888875 477778777654 488888888776654
Q ss_pred h
Q 012539 320 A 320 (461)
Q Consensus 320 ~ 320 (461)
+
T Consensus 391 ~ 391 (531)
T COG3898 391 K 391 (531)
T ss_pred c
Confidence 3
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.17 Score=43.75 Aligned_cols=179 Identities=12% Similarity=0.031 Sum_probs=74.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 012539 57 WNAMLAGYAQCGKSREALHLFHLMQIHDVKL--NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMY 134 (461)
Q Consensus 57 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 134 (461)
+-.....+.+.|++.+|...|+++...-... -......++.++-+.|+++.|...++..++.-......-+...+.+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 3344445556666666666666665532111 11233444555566666666666666655543211111111111111
Q ss_pred HhcCCHHHHHHHHHhcCCCC-------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHH
Q 012539 135 SKCGNMNKAMDFFWGMKERN-------VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207 (461)
Q Consensus 135 ~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 207 (461)
+.... ....+ ...+| ...+..++.-|-......+|...+..+... .- ..-..+...|.+.|.+.
T Consensus 88 ~~~~~---~~~~~--~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la-~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 88 SYYKQ---IPGIL--RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LA-EHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHH---HHHHH---TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HH-HHHHHHHHHHHCTT-HH
T ss_pred HHHHh---Cccch--hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHcccHH
Confidence 10000 00000 11111 123444444554555555555544444321 00 01112445566666666
Q ss_pred HHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcCCHHH
Q 012539 208 EGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAGRLDE 244 (461)
Q Consensus 208 ~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 244 (461)
.|..-++.+++.+.-.+. ......++.+|.+.|..+.
T Consensus 159 aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 159 AAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 666666666655322221 2344555666666666553
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.021 Score=44.39 Aligned_cols=91 Identities=15% Similarity=0.120 Sum_probs=58.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHH
Q 012539 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPN--EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYG 237 (461)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 237 (461)
+..++-..|+.++|+.+|++....|+... ...+..+.+.+...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45566777888888888888887776554 33555667777778888888888887765421111 1222233344566
Q ss_pred hcCCHHHHHHHHHh
Q 012539 238 RAGRLDEALDVINK 251 (461)
Q Consensus 238 ~~g~~~~A~~~~~~ 251 (461)
..|+.++|+..+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 77888887776644
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.15 Score=47.90 Aligned_cols=160 Identities=16% Similarity=0.059 Sum_probs=102.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC-------CHHHHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012539 129 ALVDMYSKCGNMNKAMDFFWGMKER-------NVYTWTSVIGGLAM---NGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198 (461)
Q Consensus 129 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 198 (461)
.|+-.|-...+++...++++.+... ....-....-++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555688888999999999888753 12222233445566 7889999999988666556777778777766
Q ss_pred HHhh---------cCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHH----HHHHHH---HhC-------CCC
Q 012539 199 GCCV---------VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD----EALDVI---NKM-------PMK 255 (461)
Q Consensus 199 ~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~~-------~~~ 255 (461)
.|-. ....++|...|.+. +.+.|+..+--.++..+.-.|... +..++- ..+ ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6533 12466777777644 455666554444454555555322 222222 111 112
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC
Q 012539 256 PHAGAWGALLNACRMYKNTEMGELASRKLVELETKN 291 (461)
Q Consensus 256 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 291 (461)
.|-..+.+++.++.-.|+.+.|.+.++++.++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 455567788888888999999999999998887764
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.15 Score=42.15 Aligned_cols=131 Identities=9% Similarity=-0.013 Sum_probs=94.4
Q ss_pred CCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCHHH
Q 012539 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKMP----MKPHAGA 260 (461)
Q Consensus 186 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~~~~ 260 (461)
..|+...-..|..+....|+..+|...|++... |+-. |......+..+....+++..|...++++. ....+.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 467777777788888899999999999988764 5543 56777778888888899999988888871 1112233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHH
Q 012539 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319 (461)
Q Consensus 261 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (461)
.-.+...+...|.+..|+..|+.+...-|.- ..-......+.++|+.+++..-+..+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 4455666888999999999999998877763 233444556678887777765554443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.002 Score=44.74 Aligned_cols=64 Identities=23% Similarity=0.250 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhccC
Q 012539 226 LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYK-NTEMGELASRKLVELET 289 (461)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p 289 (461)
+..|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|...++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 445666666677777777777776665 3334 3346666666777777 67777777777777766
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.39 Score=47.84 Aligned_cols=57 Identities=12% Similarity=0.184 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012539 187 RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253 (461)
Q Consensus 187 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 253 (461)
+.|....-.+..++.+.|.-++|.+.|-+- +. |. ..+..+...+++.+|.++-+...
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~----s~-pk-----aAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRR----SL-PK-----AAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhc----cC-cH-----HHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444455666677777777776665322 21 21 23455666677777777766653
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.35 Score=44.81 Aligned_cols=268 Identities=13% Similarity=0.117 Sum_probs=172.6
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHH--cCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH--hccCCHHHHHHHHH
Q 012539 38 DVDLARKMFDEMPERDPIAWNAMLAGYAQ--CGKSREALHLFHLMQIHDVKLNEVSMVSVLSAC--THLGALDQGRWAHV 113 (461)
Q Consensus 38 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~ 113 (461)
.+..+.+.|..-+. -.-|.+|-.++.. .|+-..|.++-.+-.+. +..|.....-++.+- .-.|+.+.|++-|+
T Consensus 68 sP~t~~Ryfr~rKR--drgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfe 144 (531)
T COG3898 68 SPYTARRYFRERKR--DRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFE 144 (531)
T ss_pred CcHHHHHHHHHHHh--hhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 34556666654332 2345555555544 56777787776655432 455666666666554 45689999999999
Q ss_pred HHHHcCCCCchHHH--HHHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CC
Q 012539 114 YIERNRLKMTVTLG--TALVDMYSKCGNMNKAMDFFWGMKE--R-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VR 187 (461)
Q Consensus 114 ~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~ 187 (461)
-|... |..... ..|.----+.|+.+.|+..-+..-. | -.-.|.+.+...+..|+++.|+++.+.-+... +.
T Consensus 145 AMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie 221 (531)
T COG3898 145 AMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE 221 (531)
T ss_pred HHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc
Confidence 99763 222221 2233333567999999988877654 2 34678899999999999999999999876543 45
Q ss_pred CCHH--HHHHHHHHHh--h-cCcHHHHHHHHHHhhhhcCCccChh-HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH
Q 012539 188 PNEV--TFVSVLRGCC--V-VGLVEEGREHFDSMRREYGIEPWLE-HYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGA 260 (461)
Q Consensus 188 p~~~--~~~~ll~~~~--~-~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 260 (461)
++.. .-..|+.+-. . ..+...|...-.... .+.|+.. .-..-..+|.+.|++.++-.+++.+ ...|.+.+
T Consensus 222 ~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i 298 (531)
T COG3898 222 KDVAERSRAVLLTAKAMSLLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI 298 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH
Confidence 5532 2223333322 1 245566666555443 5667633 3334456899999999999999999 66788777
Q ss_pred HHHHHHHHHhcCChHHH-HHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHH
Q 012539 261 WGALLNACRMYKNTEMG-ELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316 (461)
Q Consensus 261 ~~~ll~~~~~~~~~~~a-~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 316 (461)
+...+.+ +.|+.... .+=.+++..+.|++......+..+-...|++..|..--+
T Consensus 299 a~lY~~a--r~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Ae 353 (531)
T COG3898 299 ALLYVRA--RSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAE 353 (531)
T ss_pred HHHHHHh--cCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHH
Confidence 7555443 44543222 233345556789998888888888888888877665433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0048 Score=42.56 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=18.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHh
Q 012539 168 NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM 216 (461)
Q Consensus 168 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (461)
.|++++|+++|+++.... +-+......+..+|.+.|++++|..+++.+
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444443321 112333333444444444444444444444
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.11 Score=45.03 Aligned_cols=166 Identities=13% Similarity=0.110 Sum_probs=96.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHh
Q 012539 27 TAMISACAKCGDVDLARKMFDEMPER------DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACT 100 (461)
Q Consensus 27 ~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 100 (461)
=.....+.+.|++++|...|+.+... -..+.-.++.++.+.|++++|...|++..+.-+.-....+...+.+.+
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 34555677899999999999987642 234677788999999999999999999887532222222333333222
Q ss_pred ccCC-------------HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 012539 101 HLGA-------------LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAM 167 (461)
Q Consensus 101 ~~~~-------------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 167 (461)
.... ...|.. .+..++.-|-.+.-..+|...+..+.+.=...--.+..-|.+
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~A~~---------------~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRKAIE---------------EFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYK 153 (203)
T ss_dssp HHHHHHHHH-TT---HHHHHHHH---------------HHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCccchhcccChHHHHHHHH---------------HHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 122233 334444555555555555555544432212222234566888
Q ss_pred CCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhhcCcHHHH
Q 012539 168 NGAGEKSLELFSLMKQAGVRPN----EVTFVSVLRGCCVVGLVEEG 209 (461)
Q Consensus 168 ~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a 209 (461)
.|.+..|..-++.+.+. -|+ ......++.++.+.|..+.+
T Consensus 154 ~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp TT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred cccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 88999999888888775 233 23455667777777777644
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.00086 Score=38.97 Aligned_cols=33 Identities=30% Similarity=0.546 Sum_probs=30.5
Q ss_pred HHHHhhccCCCcchHHHHHHHHhhcCChhHHHH
Q 012539 281 SRKLVELETKNHGAYVLLSNIYAESKNWDRVIN 313 (461)
Q Consensus 281 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 313 (461)
|+++++++|+++.+|..|..+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999999999999999999999999863
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.013 Score=52.62 Aligned_cols=93 Identities=15% Similarity=0.079 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCc---chHHHHH
Q 012539 228 HYGCLVDLYGRAGRLDEALDVINKM-PMKPHA----GAWGALLNACRMYKNTEMGELASRKLVELETKNH---GAYVLLS 299 (461)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~ 299 (461)
.|...+..+.+.|++++|...|+.+ ...|+. ..+..+...+...|+++.|...|+.+.+..|+++ .++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445556666666666665 222332 2444555566677777777777777776666543 3444456
Q ss_pred HHHhhcCChhHHHHHHHHHHh
Q 012539 300 NIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 300 ~~~~~~g~~~~a~~~~~~m~~ 320 (461)
.+|...|++++|.++++...+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666677777777777776654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.66 Score=46.66 Aligned_cols=296 Identities=12% Similarity=0.098 Sum_probs=162.1
Q ss_pred cCCchHHHHHHhcCCCCC---HHHHHHHHHHHHHcCC---HHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChHHHHHH
Q 012539 5 LGCLGYCQKVFDGIHEPD---VVCQTAMISACAKCGD---VDLARKMFDEMPE--RDPIAWNAMLAGYAQCGKSREALHL 76 (461)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~ 76 (461)
.+.+..|+++-.-+-.|. ..+|.....-+.+..+ -+-+..+=+++.. ..-++|..+.+..-+.|+++-|..+
T Consensus 450 r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kL 529 (829)
T KOG2280|consen 450 RHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKL 529 (829)
T ss_pred cchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHH
Confidence 455667777766554443 4566666666666532 2333444444444 3566788888877888888888877
Q ss_pred HHHHHHCCCC----cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-----------CCCchHHHHHHHH---------
Q 012539 77 FHLMQIHDVK----LNEVSMVSVLSACTHLGALDQGRWAHVYIERNR-----------LKMTVTLGTALVD--------- 132 (461)
Q Consensus 77 ~~~m~~~~~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~li~--------- 132 (461)
++.=...+.+ .+..-+...+.-+...|+.+...+++-.+.+.- .|....+|.-++.
T Consensus 530 le~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d 609 (829)
T KOG2280|consen 530 LELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYD 609 (829)
T ss_pred HhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhh
Confidence 6532221110 122234455666667777777666665554321 1111122221111
Q ss_pred HHHhcCCHHHHHHHHH--hcC-----CCCHHHHHHHHHHHHhCCCh---HHH-------HHHHHHHH-HcCCCCCHHHHH
Q 012539 133 MYSKCGNMNKAMDFFW--GMK-----ERNVYTWTSVIGGLAMNGAG---EKS-------LELFSLMK-QAGVRPNEVTFV 194 (461)
Q Consensus 133 ~~~~~g~~~~A~~~~~--~~~-----~~~~~~~~~li~~~~~~g~~---~~A-------~~~~~~m~-~~g~~p~~~~~~ 194 (461)
.|-. ++...+...|. ... ..-..........+++.... ++| +++.+.+. +.|..-...+.+
T Consensus 610 ~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~ 688 (829)
T KOG2280|consen 610 FYNQ-DDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLH 688 (829)
T ss_pred hhhc-ccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHH
Confidence 1111 11111111111 000 01111222233344443331 111 12222221 122223333444
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 012539 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNT 274 (461)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 274 (461)
--+.-+...|+..+|.++-.+.. -||...|-.=+.+++..+++++-+++-++.. .+.-|..+..+|.+.|+.
T Consensus 689 dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~ 760 (829)
T KOG2280|consen 689 DTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNK 760 (829)
T ss_pred HHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccH
Confidence 45556667788888888766553 4677778778888888899888888777653 366788888889999999
Q ss_pred HHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHH
Q 012539 275 EMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317 (461)
Q Consensus 275 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 317 (461)
++|.+++.+...+. -...+|.+.|++.+|.+.--+
T Consensus 761 ~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 761 DEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHHHH
Confidence 99888766653322 467788888988888876543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.2 Score=43.88 Aligned_cols=230 Identities=10% Similarity=-0.061 Sum_probs=112.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH-hccCC-HHHH-HHHHHHHHHcCCCCchHHHHHH
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSAC-THLGA-LDQG-RWAHVYIERNRLKMTVTLGTAL 130 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~-~~~~~-~~~a-~~~~~~~~~~~~~~~~~~~~~l 130 (461)
...|+.-+.++++....++|..-+.-.-..+ .||.. |...=..+ .+.|. ..-+ +.+|..+... -|+ -+++|
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~--lgn--pqesL 142 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQY--LGN--PQESL 142 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHh--cCC--cHHHH
Confidence 3456666777777777777766555543322 12211 00000000 11121 1112 2233333321 111 23455
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC--C--------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012539 131 VDMYSKCGNMNKAMDFFWGMKER--N--------VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200 (461)
Q Consensus 131 i~~~~~~g~~~~A~~~~~~~~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 200 (461)
...+.-..-+++-...|+.-..| . ....+.++..+.-.|.+.-.+.++++..+...+.+......|.+.-
T Consensus 143 dRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~ 222 (366)
T KOG2796|consen 143 DRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRIS 222 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 55555444444444444432221 1 2334555666666677777777777777755455666666777777
Q ss_pred hhcCcHHHHHHHHHHhhhhcCCccChhHHHHH-----HHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCC
Q 012539 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCL-----VDLYGRAGRLDEALDVINKMPMK--PHAGAWGALLNACRMYKN 273 (461)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-----i~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~ll~~~~~~~~ 273 (461)
.+.|+.+.|..+|++..+..+ ..+....+.+ ...|.-.+++..|...+.+++.. .|+...|.-.-+..-.|+
T Consensus 223 MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~ 301 (366)
T KOG2796|consen 223 MQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK 301 (366)
T ss_pred HhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH
Confidence 777888888887776654322 2222222222 22344455566666666555221 122222222222233455
Q ss_pred hHHHHHHHHHHhhccCC
Q 012539 274 TEMGELASRKLVELETK 290 (461)
Q Consensus 274 ~~~a~~~~~~~~~~~p~ 290 (461)
...|.+..+.+.+..|.
T Consensus 302 l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 302 LKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHHHhccCCc
Confidence 66666666666666555
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.92 Score=45.33 Aligned_cols=67 Identities=18% Similarity=0.178 Sum_probs=31.1
Q ss_pred CCchHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCC--C---hhHHHHHHHHHHHcCChHHHHHHH
Q 012539 6 GCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPER--D---PIAWNAMLAGYAQCGKSREALHLF 77 (461)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~---~~~~~~li~~~~~~g~~~~A~~~~ 77 (461)
|.+++|.+++-.+-.+|. .|..+.+.|++-...++++.-... | ...|+.+...++....+++|.+.|
T Consensus 748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555444442 234455555555555555442211 1 224444444444444444444443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.057 Score=48.54 Aligned_cols=101 Identities=11% Similarity=0.026 Sum_probs=63.5
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 012539 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH----AGAWGALL 265 (461)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll 265 (461)
.|...+......|++++|...|+.+++.+.-.+ .+..+-.+...|...|++++|...|+.+ ...|+ ...+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444434456777777777777765432111 1245556777777777777777777776 11222 22444455
Q ss_pred HHHHhcCChHHHHHHHHHHhhccCCCc
Q 012539 266 NACRMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 266 ~~~~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
..+...|+.+.|...++.+.+..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 567778888888888888888888764
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.014 Score=55.44 Aligned_cols=96 Identities=13% Similarity=0.050 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHH
Q 012539 226 LEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAG----AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300 (461)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 300 (461)
...+..+..+|.+.|++++|+..|++. .+.|+.. +|..+..+|...|+.++|+..+++++++.+. .|..+..
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~~ 151 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTILN 151 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHHh
Confidence 556677777777777777777777664 5556543 4777777777777777777777777775321 2221111
Q ss_pred --HHhhcCChhHHHHHHHHHHhCCCc
Q 012539 301 --IYAESKNWDRVINVRQIMKAKGVK 324 (461)
Q Consensus 301 --~~~~~g~~~~a~~~~~~m~~~g~~ 324 (461)
.+....+.++..++++.+.+.|.+
T Consensus 152 DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 152 DPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred CcchhhhcccHHHHHHHHHHHHhCCc
Confidence 111223334566666666666653
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.043 Score=43.04 Aligned_cols=79 Identities=14% Similarity=0.139 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHH---------------cCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhc
Q 012539 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQ---------------AGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREY 220 (461)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---------------~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (461)
.++.++|.++++.|+.+....+++.... ....|+..+..+++.+|+..|++..|.++.+...+.+
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 3445555555555555555555544321 1233444444444444444455555555554444444
Q ss_pred CCccChhHHHHHHH
Q 012539 221 GIEPWLEHYGCLVD 234 (461)
Q Consensus 221 ~~~p~~~~~~~li~ 234 (461)
+++-+..+|..|+.
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 44444444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.012 Score=41.27 Aligned_cols=61 Identities=18% Similarity=0.271 Sum_probs=43.4
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcch
Q 012539 234 DLYGRAGRLDEALDVINKM-PMKPH-AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGA 294 (461)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 294 (461)
..|.+.+++++|.++++.+ ...|+ +..|......+...|++++|...++++.+..|+++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 4567777888888777777 34443 3466666666788888888888888888888876543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0064 Score=37.75 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHH
Q 012539 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSN 300 (461)
Q Consensus 259 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 300 (461)
.+|..+...+...|++++|+++++++.+..|+++..+..|..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357778888999999999999999999999999887776653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.58 Score=46.23 Aligned_cols=255 Identities=11% Similarity=0.069 Sum_probs=151.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHH---------HHHHHCCCCcCHHHHHHHHHHHhccCCHH--HHHHHHHHHHHcCCCC
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLF---------HLMQIHDVKLNEVSMVSVLSACTHLGALD--QGRWAHVYIERNRLKM 122 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~---------~~m~~~~~~p~~~t~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~ 122 (461)
.+.+.+-+..|...|.+++|..+- +.+... ..+...++..-.+|.+..+.. +...-++++.+.|-.|
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 345555666778888888876531 111110 112333455556666655543 3334455677777767
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--CHHHHHHH-----HHHHHhCCChHHHHHHHHHHHH--cCCCCCHHHH
Q 012539 123 TVTLGTALVDMYSKCGNMNKAMDFFWGMKER--NVYTWTSV-----IGGLAMNGAGEKSLELFSLMKQ--AGVRPNEVTF 193 (461)
Q Consensus 123 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~ 193 (461)
+... +.+.++-.|++.+|-++|.+--.. -...|+-| ..-|...|..++-..+.++-.+ ..++.....
T Consensus 634 ~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaA- 709 (1081)
T KOG1538|consen 634 NDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAA- 709 (1081)
T ss_pred hHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHH-
Confidence 7654 566777789999999999876643 33344432 3345566666665555554321 122222222
Q ss_pred HHHHHHHhhcCcHHHHHHHHHH-----hhhhc--CC-ccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 012539 194 VSVLRGCCVVGLVEEGREHFDS-----MRREY--GI-EPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALL 265 (461)
Q Consensus 194 ~~ll~~~~~~g~~~~a~~~~~~-----~~~~~--~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll 265 (461)
...+...|+.++|..+..+ |.-+- .+ ..+.++...+..-+.+...+.-|.++|.+|+.. .+++
T Consensus 710 ---AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ksiV 780 (1081)
T KOG1538|consen 710 ---AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------KSLV 780 (1081)
T ss_pred ---HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH------HHHh
Confidence 2233345666666543211 11000 11 123455555666667778888899999998632 2455
Q ss_pred HHHHhcCChHHHHHHHHHHhhccCCCcc----------hHHHHHHHHhhcCChhHHHHHHHHHHhCCC
Q 012539 266 NACRMYKNTEMGELASRKLVELETKNHG----------AYVLLSNIYAESKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 266 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~----------~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 323 (461)
......+++.+|..+.++.-+..|+-.. -|.-.-.+|-++|+-.+|.++++++....+
T Consensus 781 qlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred hheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 6667889999999999998877665322 234456788899999999999998866544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.14 Score=41.53 Aligned_cols=73 Identities=23% Similarity=0.276 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhh----hcCCccChhHH
Q 012539 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR----EYGIEPWLEHY 229 (461)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 229 (461)
.+...++..+...|++++|+.+.+.+.... +-|...+..+|.++...|+..+|.+.|+.+.+ +.|+.|++.+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 345566777778888888888888887752 44677888888888888888888888876643 45777776543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.021 Score=46.49 Aligned_cols=61 Identities=18% Similarity=0.130 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 260 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
....++..+...|+++.|....+.+...+|-+...|..++.+|...|+..+|.++|+.+.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556667788899999999999999999999999999999999999999999999998853
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.095 Score=46.88 Aligned_cols=100 Identities=13% Similarity=0.013 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhc-C--CHHHHHHHHHhC-CCCCCHHHHHH-H
Q 012539 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA-G--RLDEALDVINKM-PMKPHAGAWGA-L 264 (461)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g--~~~~A~~~~~~~-~~~p~~~~~~~-l 264 (461)
...|..|..+|...|+.+.|..-|....+- ..+++..+..+..++... | .-.++.++|+++ ...|+...-.. |
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 444444444444444444444444444321 111233333333332221 1 122444444444 33343332222 2
Q ss_pred HHHHHhcCChHHHHHHHHHHhhccCCC
Q 012539 265 LNACRMYKNTEMGELASRKLVELETKN 291 (461)
Q Consensus 265 l~~~~~~~~~~~a~~~~~~~~~~~p~~ 291 (461)
...+...|++.+|...++.|.+..|++
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 233555555555555555555555554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.41 Score=37.27 Aligned_cols=141 Identities=16% Similarity=0.139 Sum_probs=86.5
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHH
Q 012539 165 LAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244 (461)
Q Consensus 165 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 244 (461)
+.-.|..++..++..+.... .+..-++.+|--....-+-+-..+.++.+-+-+.+ ..+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHH
Confidence 34467778888888877653 24455666655444444555555555555332222 23455555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCc
Q 012539 245 ALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324 (461)
Q Consensus 245 A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 324 (461)
....+-.++ .+.......+......|+.+.-.+++..+.+.+..++....-+..+|.+.|+..++.+++.+.-+.|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 555554443 344556667778889999999999999988766667788999999999999999999999999999985
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.86 Score=42.68 Aligned_cols=162 Identities=12% Similarity=-0.002 Sum_probs=104.2
Q ss_pred cCHHHHHHHHH-HHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHH---------
Q 012539 87 LNEVSMVSVLS-ACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVY--------- 156 (461)
Q Consensus 87 p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------- 156 (461)
|...++..+-. .+.-.++.++|.++-..+++.. ..+....-.=..++.-.++.+.|...|++....|+.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~ 244 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASM 244 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhh
Confidence 33445544433 3467788888888877777754 222211111122334467889999999887754332
Q ss_pred ------HHHHHHHHHHhCCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-h
Q 012539 157 ------TWTSVIGGLAMNGAGEKSLELFSLMKQA---GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-L 226 (461)
Q Consensus 157 ------~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~ 226 (461)
.|..-..-..+.|++..|.+.|.+.+.. +++|+...|.....+..+.|+.++|+.--+... .+.|. +
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syi 321 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYI 321 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHH
Confidence 2333344567899999999999998763 244556667777777888999999998887665 34443 2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 227 EHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
..|..-..++.-.+++++|.+-|++.
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444556667888888888776
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.015 Score=41.36 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHh
Q 012539 192 TFVSVLRGCCVVGLVEEGREHFDSM 216 (461)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (461)
++..+..++...|+.++|.+++++.
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444444443
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.061 Score=42.20 Aligned_cols=95 Identities=11% Similarity=0.054 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012539 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNAC 268 (461)
Q Consensus 189 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 268 (461)
|..++..++.++++.|+++....+.+.. .|+.++...- .+. +-..-+..|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~~---------~~~------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKKK---------EGD------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCccc---------cCc------cCCCCCCCCCHHHHHHHHHHH
Confidence 4677888999999999999988888755 3555432110 000 111114556666777777776
Q ss_pred HhcCChHHHHHHHHHHhhccC--CCcchHHHHHHH
Q 012539 269 RMYKNTEMGELASRKLVELET--KNHGAYVLLSNI 301 (461)
Q Consensus 269 ~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~ 301 (461)
...+++..|.++.+...+.-| -+..+|..|++=
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 666777777776666665332 223455555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.06 E-value=1.9 Score=43.54 Aligned_cols=246 Identities=12% Similarity=0.062 Sum_probs=143.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCC--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC--------
Q 012539 21 PDVVCQTAMISACAKCGDVDLARKMFDEMPER--------DPIAWNAMLAGYAQCGKSREALHLFHLMQIHD-------- 84 (461)
Q Consensus 21 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------- 84 (461)
....+|..+..---.+|+++.|..+++.=+.. +..-+...+.-..+.|+.+-...++..|...-
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~ 584 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMT 584 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888999999999998854321 22345556666777788777766665554321
Q ss_pred --CCc-CHHHHHHHHH---------HHhccCCHHHHHHHHHHHH-H-cCCCCchHHHHHHHHHHHhcCCHHHHHH-----
Q 012539 85 --VKL-NEVSMVSVLS---------ACTHLGALDQGRWAHVYIE-R-NRLKMTVTLGTALVDMYSKCGNMNKAMD----- 145 (461)
Q Consensus 85 --~~p-~~~t~~~ll~---------~~~~~~~~~~a~~~~~~~~-~-~~~~~~~~~~~~li~~~~~~g~~~~A~~----- 145 (461)
..| ....|.-+++ .|-...+......++-+-. + ..+.+-........+.+++.....-..+
T Consensus 585 l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 585 LRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred HHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 011 1112222221 1112222222222211110 0 0011112222334555555544222211
Q ss_pred -----HHHhcCCC-----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 012539 146 -----FFWGMKER-----NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDS 215 (461)
Q Consensus 146 -----~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 215 (461)
+++.+... .-.+.+--+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..+++++-+++-+.
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 12222111 11234445666778899999998888764 57888887778899999999988777655
Q ss_pred hhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 012539 216 MRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRK 283 (461)
Q Consensus 216 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 283 (461)
.. ++.-|.-.+..+.+.|+.++|.+.+-+.+-.+ -...+|.+.|++.+|.+..-+
T Consensus 741 kk-------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 741 KK-------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cC-------CCCCchhHHHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHHH
Confidence 42 24567778999999999999999998875333 455667778888887766443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.022 Score=40.46 Aligned_cols=61 Identities=11% Similarity=0.108 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhc----cCC---CcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 260 AWGALLNACRMYKNTEMGELASRKLVEL----ETK---NHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 260 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
+++.+...|...|++++|+..++++.++ +++ -..++..++.+|...|++++|.+.+++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5566666677777777777777776643 111 244677888888888888888888877543
|
... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.71 Score=44.97 Aligned_cols=158 Identities=13% Similarity=0.093 Sum_probs=78.7
Q ss_pred HHHHcCChHHHHHHHH--HHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH
Q 012539 63 GYAQCGKSREALHLFH--LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM 140 (461)
Q Consensus 63 ~~~~~g~~~~A~~~~~--~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 140 (461)
...-.|+++++.++.+ ++.. .+ +..-.+.++.-+.+.|..+.|.++-. |+.+ --+...++|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~---rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVT---------DPDH---RFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------ChHH---HhHHHHhcCCH
Confidence 3444566666555543 1111 11 23335555666666666666665422 2211 23445667777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhc
Q 012539 141 NKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREY 220 (461)
Q Consensus 141 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (461)
+.|.++-++.. +...|..|.....++|+++-|.+.|.+... |..|+-.|.-.|+.+.-.++.+....+
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~- 402 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER- 402 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-
Confidence 77766665544 555777777777777777777777766432 334555555666666555555544322
Q ss_pred CCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012539 221 GIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253 (461)
Q Consensus 221 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 253 (461)
| -++....++.-.|++++..+++.+.+
T Consensus 403 ~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 403 G------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred c------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 1 23444444555566666666666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.62 Score=44.55 Aligned_cols=64 Identities=9% Similarity=-0.073 Sum_probs=38.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 012539 53 DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE----VSMVSVLSACTHLGALDQGRWAHVYIERN 118 (461)
Q Consensus 53 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 118 (461)
+...|+.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|...++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3446666666666666666666666666553 3442 24666666666666666666666666553
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.74 Score=41.27 Aligned_cols=137 Identities=10% Similarity=0.088 Sum_probs=76.2
Q ss_pred HHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHH
Q 012539 31 SACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQ 107 (461)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 107 (461)
......|++.+|..+|+.... .+...--.|+.+|...|+.+.|..++..+....-.........-+..+.+.....+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345567777788777776543 24455666777888888888888887776543222122222222333333333333
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CHHHHHHHHHHHHhCC
Q 012539 108 GRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER-----NVYTWTSVIGGLAMNG 169 (461)
Q Consensus 108 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g 169 (461)
...+....-.. +.|...-..|...|...|+.++|.+.+-.+.++ |...-..|+..+..-|
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 33333333321 335666666777777777777777666655543 3344444555544444
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.18 Score=41.06 Aligned_cols=94 Identities=13% Similarity=-0.025 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 135 (461)
.......-+-+.|++++|..+|+-+...+. -+..-+..|..++...+++++|...|........ .|+...--...+|.
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l 116 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHH
Confidence 334444555667777777777776665432 2333445555556666677777777766555432 22222233566666
Q ss_pred hcCCHHHHHHHHHhcC
Q 012539 136 KCGNMNKAMDFFWGMK 151 (461)
Q Consensus 136 ~~g~~~~A~~~~~~~~ 151 (461)
..|+.+.|+..|....
T Consensus 117 ~l~~~~~A~~~f~~a~ 132 (165)
T PRK15331 117 LMRKAAKARQCFELVN 132 (165)
T ss_pred HhCCHHHHHHHHHHHH
Confidence 6677777766666544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.14 Score=45.20 Aligned_cols=98 Identities=12% Similarity=0.084 Sum_probs=76.0
Q ss_pred HHHHHhhCC--CCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccC-----------
Q 012539 42 ARKMFDEMP--ERDPIAWNAMLAGYAQC-----GKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLG----------- 103 (461)
Q Consensus 42 A~~~~~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~----------- 103 (461)
....|.... ++|-.+|-+.+..|... +..+=....++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 455666666 67888888888888654 456666677888999999999999999998765432
Q ss_pred -----CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 012539 104 -----ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139 (461)
Q Consensus 104 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 139 (461)
+-+-+..++++|...|+.||-.+-..|++++++.|-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 234577888899999999998888888888887664
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.53 E-value=1.4 Score=37.93 Aligned_cols=191 Identities=20% Similarity=0.156 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-H
Q 012539 126 LGTALVDMYSKCGNMNKAMDFFWGMK-----ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR-G 199 (461)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~ 199 (461)
........+...+++..+...+.... ......+......+...+.+..+.+.+.........+. ........ .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHH
Confidence 33334444444455544444444332 12233344444444444455555555555544222211 11111111 3
Q ss_pred HhhcCcHHHHHHHHHHhhhhcCCcc----ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcC
Q 012539 200 CCVVGLVEEGREHFDSMRREYGIEP----WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH--AGAWGALLNACRMYK 272 (461)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~~ 272 (461)
+...|+.+.+...+..... ..| ....+......+...++.+.|...+... ...++ ...+..+...+...+
T Consensus 140 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 140 LYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 4455555555555555422 111 1222223333344555556665555554 22222 345555555555566
Q ss_pred ChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 273 NTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 273 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
+.+.+...+.......|.....+..+...+...+.++++...+.....
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666655333444444444455556666665555543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.2 Score=46.65 Aligned_cols=119 Identities=16% Similarity=0.108 Sum_probs=78.2
Q ss_pred HHHHHcCCHHHHHHHHhhCCC------------------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHH
Q 012539 31 SACAKCGDVDLARKMFDEMPE------------------RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSM 92 (461)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~m~~------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 92 (461)
+.|.+.|++..|..-|++... .-..+++.|..+|.+.+++.+|+..-.+.+..+ ++|.-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 467788888888888776331 023467777778888888888888888777764 4566666
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH-HHHHHhcC
Q 012539 93 VSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA-MDFFWGMK 151 (461)
Q Consensus 93 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~ 151 (461)
.--..++...++++.|+..|.++++.. |.|-.+-+.|+.+--+..+..+. .++|..|-
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677777888888888888888887764 33444555555554444444333 44554443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.21 Score=46.51 Aligned_cols=138 Identities=17% Similarity=0.054 Sum_probs=96.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCC
Q 012539 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241 (461)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 241 (461)
...|.+.|++..|...|++.... |. +.+.-+.++...... . -...+..|.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~-~--------k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA-L--------KLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH-H--------HHHHhhHHHHHHHhhhh
Confidence 34677778888888877776542 00 111111122222111 1 13456778888999999
Q ss_pred HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHH-HHHHHHH
Q 012539 242 LDEALDVINKM-PMK-PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV-INVRQIM 318 (461)
Q Consensus 242 ~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 318 (461)
+.+|+..-+.. ... +|+-....=..++...|+++.|...|+++++++|.|..+-.-|+.+-.+.....+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888776 333 46666667778899999999999999999999999988888888877776665554 6788888
Q ss_pred HhC
Q 012539 319 KAK 321 (461)
Q Consensus 319 ~~~ 321 (461)
...
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.33 Score=45.24 Aligned_cols=254 Identities=15% Similarity=0.112 Sum_probs=140.1
Q ss_pred HHHHcCCHHHHHHHHhhCCCC---C----hhHHHHHHHHHHHcCChHHHHHHHHH--HHH--CCCCc-CHHHHHHHHHHH
Q 012539 32 ACAKCGDVDLARKMFDEMPER---D----PIAWNAMLAGYAQCGKSREALHLFHL--MQI--HDVKL-NEVSMVSVLSAC 99 (461)
Q Consensus 32 ~~~~~g~~~~A~~~~~~m~~~---~----~~~~~~li~~~~~~g~~~~A~~~~~~--m~~--~~~~p-~~~t~~~ll~~~ 99 (461)
-+++.|+......+|+...+- | ...|..|.++|.-.+++++|++.-.. .+. .|-+. ...+-..+.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 467888888888888876543 2 23566677777777778888775321 000 01000 111112222233
Q ss_pred hccCCHHHHHHHHH----HHHHcC--CCCchHHHHHHHHHHHhcCC--------------------HHHHHHHHHhcCC-
Q 012539 100 THLGALDQGRWAHV----YIERNR--LKMTVTLGTALVDMYSKCGN--------------------MNKAMDFFWGMKE- 152 (461)
Q Consensus 100 ~~~~~~~~a~~~~~----~~~~~~--~~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~~~~- 152 (461)
--.|.+++|.-.-. ...+.| +-.....|| |.+.|...|+ ++.|.++|.+-.+
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYN-lgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYN-LGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhh-hhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 33344444432211 111111 111223444 6666665442 2333444432211
Q ss_pred ------C--CHHHHHHHHHHHHhCCChHHHHHHHHHHH----HcCCCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhh
Q 012539 153 ------R--NVYTWTSVIGGLAMNGAGEKSLELFSLMK----QAGVRP-NEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219 (461)
Q Consensus 153 ------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (461)
+ --..|..|...|.-.|+++.|+..-+.-. +.|-+. ....+..|.+++.-.|+++.|.+.|+....-
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 0 11346666666667788888887655422 223221 2345677888888889999998888764321
Q ss_pred ---cCC-ccChhHHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 012539 220 ---YGI-EPWLEHYGCLVDLYGRAGRLDEALDVINKM-------P-MKPHAGAWGALLNACRMYKNTEMGELASRKLVE 286 (461)
Q Consensus 220 ---~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 286 (461)
.|- .......-+|...|.-...+++|+..+.+- + .-.....+-+|..++...|..+.|..+.+...+
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 111 123445566778887778888888777554 1 112445677888888888888888888777664
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.17 Score=44.70 Aligned_cols=99 Identities=16% Similarity=0.110 Sum_probs=78.2
Q ss_pred HHHHHHhcC--CCCHHHHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC-----------
Q 012539 143 AMDFFWGMK--ERNVYTWTSVIGGLAMN-----GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG----------- 204 (461)
Q Consensus 143 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----------- 204 (461)
.++.|.... ++|-.+|-+++..+... +..+-....++.|.+.|+.-|..+|..||+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 456677776 67888888888887654 556777778889999999999999999998764432
Q ss_pred -----cHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCH
Q 012539 205 -----LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242 (461)
Q Consensus 205 -----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 242 (461)
+-+-+..++++|. .+|+.||-++-..|+.++++.|-.
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhcccccc
Confidence 2344788999995 579999999999999999998864
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.28 E-value=1.7 Score=37.39 Aligned_cols=219 Identities=19% Similarity=0.074 Sum_probs=134.8
Q ss_pred CChHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCchHHHHHHHHHHHhcCCHHHHHH
Q 012539 68 GKSREALHLFHLMQIHDVK-LNEVSMVSVLSACTHLGALDQGRWAHVYIERN-RLKMTVTLGTALVDMYSKCGNMNKAMD 145 (461)
Q Consensus 68 g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 145 (461)
+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...++++.+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444455555554443211 12445555556666666666666666655542 223444555556666666777777777
Q ss_pred HHHhcCC--CC-HHHHHHHHH-HHHhCCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHhhcCcHHHHHHHHHHhh
Q 012539 146 FFWGMKE--RN-VYTWTSVIG-GLAMNGAGEKSLELFSLMKQAGVRP----NEVTFVSVLRGCCVVGLVEEGREHFDSMR 217 (461)
Q Consensus 146 ~~~~~~~--~~-~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (461)
.+..... ++ ......... .+...|+++.|...|.+... ..| ....+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 7776653 21 122333333 67788888888888888755 233 23334444444566788888888888776
Q ss_pred hhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCC
Q 012539 218 REYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH-AGAWGALLNACRMYKNTEMGELASRKLVELETK 290 (461)
Q Consensus 218 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 290 (461)
+. ... ....+..+...+...+.++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 195 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 42 222 3566777888888888888888888777 33444 344555555555677788999898888888876
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.82 Score=36.44 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=32.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhh
Q 012539 162 IGGLAMNGAGEKSLELFSLMKQAGVRP---NEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219 (461)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (461)
.....+.|++++|.+.|+.+... .+. ....-..|+.++...+++++|...+++.++-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 33444566666666666666553 111 1334455666666666666666666666544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.06 E-value=2.5 Score=38.03 Aligned_cols=140 Identities=13% Similarity=0.047 Sum_probs=90.3
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC----HHHHHHHHHHHHhCCChH
Q 012539 97 SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN----VYTWTSVIGGLAMNGAGE 172 (461)
Q Consensus 97 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~ 172 (461)
......+++.++...+....... +-+......|+.+|...|+.+.|..++..++... .....+-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34567889999999999988765 3345566679999999999999999999988431 222233445555555555
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcC
Q 012539 173 KSLELFSLMKQAGVRP-NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240 (461)
Q Consensus 173 ~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 240 (461)
+...+-++.-. .| |...-..+...+...|+.+.|.+.+-.+.++..-.-|...-..|++.+.-.|
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 55555555443 44 5555566777788888888888776655543222223344445555444444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.02 E-value=3.4 Score=39.43 Aligned_cols=274 Identities=14% Similarity=0.082 Sum_probs=124.9
Q ss_pred ccCCchHHHHHHhcCCC---CC------HHHHHHHHHHHHHcCCHHHHHHHHhhCCCC-ChhHHHHHHHH--HHHcCChH
Q 012539 4 ELGCLGYCQKVFDGIHE---PD------VVCQTAMISACAKCGDVDLARKMFDEMPER-DPIAWNAMLAG--YAQCGKSR 71 (461)
Q Consensus 4 ~~g~~~~A~~~~~~~~~---~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~--~~~~g~~~ 71 (461)
+.+++.+|.++|.++.+ .+ ...-+.++++|... +++.....+....+. ....|-.|..+ +-+.+++.
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~ 96 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYR 96 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHH
Confidence 45667777777766542 12 12344566666533 233333333222221 12233333332 23556677
Q ss_pred HHHHHHHHHHHC--CCCc------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC----CchHHHHHHHHH
Q 012539 72 EALHLFHLMQIH--DVKL------------NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK----MTVTLGTALVDM 133 (461)
Q Consensus 72 ~A~~~~~~m~~~--~~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~ 133 (461)
+|++.+..-... +.+| |-.-=+..+.++...|++.+++.++.++...-++ -+..+|+.++-+
T Consensus 97 kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlm 176 (549)
T PF07079_consen 97 KALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLM 176 (549)
T ss_pred HHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Confidence 777766655443 2221 1111223344556667777777666666543333 566666666666
Q ss_pred HHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh--cCcHHHHHH
Q 012539 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV--VGLVEEGRE 211 (461)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g~~~~a~~ 211 (461)
++++=-++ +-+.+...=..-|.-||..|.+.=+ .+++-.=..+-|....+..++.-..- .....--.+
T Consensus 177 lsrSYfLE----l~e~~s~dl~pdyYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq 246 (549)
T PF07079_consen 177 LSRSYFLE----LKESMSSDLYPDYYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQ 246 (549)
T ss_pred HhHHHHHH----HHHhcccccChHHHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHH
Confidence 65431111 1111111111233334444432111 01100001133333333333332221 111222223
Q ss_pred HHHHhhhhcCCccCh-hHHHHHHHHHHhcCCHHHHHHHHHhC------CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 012539 212 HFDSMRREYGIEPWL-EHYGCLVDLYGRAGRLDEALDVINKM------PMK-PHAGAWGALLNACRMYKNTEMGELASRK 283 (461)
Q Consensus 212 ~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~------~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 283 (461)
++..- +++-+.|+- -+...|+.-+.+ +.+++..+-+.+ +.+ .-..++..++....+.++...|.+.+..
T Consensus 247 ~l~~W-e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~l 323 (549)
T PF07079_consen 247 ILENW-ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLAL 323 (549)
T ss_pred HHHHH-HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33322 223455552 233344444444 444444444433 111 1234788888888999999999999888
Q ss_pred HhhccCCC
Q 012539 284 LVELETKN 291 (461)
Q Consensus 284 ~~~~~p~~ 291 (461)
+.-++|..
T Consensus 324 L~~ldp~~ 331 (549)
T PF07079_consen 324 LKILDPRI 331 (549)
T ss_pred HHhcCCcc
Confidence 88888764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.95 E-value=3.4 Score=39.03 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=23.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 225 WLEHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
+-..+..+..+..-.|+.++|.+..++|
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~ 331 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKA 331 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4456678888888999999999999988
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.83 Score=42.02 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=22.1
Q ss_pred HHHhcCChHHHHHHHHHHhhcc--CCC----cchHHHHHHHHhhcCChhHHHHHH
Q 012539 267 ACRMYKNTEMGELASRKLVELE--TKN----HGAYVLLSNIYAESKNWDRVINVR 315 (461)
Q Consensus 267 ~~~~~~~~~~a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~a~~~~ 315 (461)
+++..|....|.+..++..++- ..| ......+...|...|+.+.|..-|
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rY 269 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRY 269 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHH
Confidence 3555555555555555544321 111 122234555555555555544433
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.77 E-value=2.9 Score=41.35 Aligned_cols=158 Identities=15% Similarity=0.107 Sum_probs=81.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcC-CCCc-----hHHHHHHHHHHHh----cCCHHHHHHHHHhcCC--CCHHHHHH
Q 012539 93 VSVLSACTHLGALDQGRWAHVYIERNR-LKMT-----VTLGTALVDMYSK----CGNMNKAMDFFWGMKE--RNVYTWTS 160 (461)
Q Consensus 93 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~~~~--~~~~~~~~ 160 (461)
..+++...=.|+-+.+.+.+.+..+.+ +... .-.|...+..++. ..+.+.|.++++.+.. |+...|..
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 345555555566666666666554422 1111 1223333333322 3456667777776664 55554443
Q ss_pred HH-HHHHhCCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHH-HH
Q 012539 161 VI-GGLAMNGAGEKSLELFSLMKQAG---VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV-DL 235 (461)
Q Consensus 161 li-~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-~~ 235 (461)
.- ..+...|+.++|++.|++..... .+.....+--+.-.+.-..++++|...|..+.+.....+ ..|.-+. .+
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSk--a~Y~Y~~a~c 349 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSK--AFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHH--HHHHHHHHHH
Confidence 32 34555677777777777544211 111233344455556667777777777777765433322 2332222 23
Q ss_pred HHhcCCH-------HHHHHHHHhC
Q 012539 236 YGRAGRL-------DEALDVINKM 252 (461)
Q Consensus 236 ~~~~g~~-------~~A~~~~~~~ 252 (461)
+...|+. ++|.++|.+.
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHH
Confidence 4455555 7777777766
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=3.4 Score=37.69 Aligned_cols=61 Identities=13% Similarity=0.206 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCh----HHHHHHHHHH
Q 012539 20 EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKS----REALHLFHLM 80 (461)
Q Consensus 20 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m 80 (461)
.+|..+....+.++...|..+-...+..-+..+|+..-...+.++.+.|+. .+++..+..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 345555555555555555433333333323334444444555555555542 2344444444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.41 Score=42.36 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=50.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-hhHHHHHHH
Q 012539 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRP--NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHYGCLVD 234 (461)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 234 (461)
|+.-+..| +.|++..|...|....+..... ....+..|..++...|+.++|..+|..+.++++-.|. +...--|..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 55444433 4555666666666666542110 1223344666666666666666666666655444443 244555555
Q ss_pred HHHhcCCHHHHHHHHHhC
Q 012539 235 LYGRAGRLDEALDVINKM 252 (461)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~ 252 (461)
...+.|+.++|..+|+++
T Consensus 224 ~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 224 SLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHhcCHHHHHHHHHHH
Confidence 555555555555555554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.59 E-value=1.6 Score=41.48 Aligned_cols=144 Identities=13% Similarity=0.125 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHH-HHHHHH
Q 012539 89 EVSMVSVLSACTHLGALDQGRWAHVYIERNR-LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK--ERNVYTW-TSVIGG 164 (461)
Q Consensus 89 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~-~~li~~ 164 (461)
...|...+++-.+..-++.|+.+|.++.+.+ +.+++.++++++..|+ .|+..-|..+|+.-. -+|...| +..+.-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3556667777777777788888888887777 5567777787777666 567777777777433 2444333 334455
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHH
Q 012539 165 LAMNGAGEKSLELFSLMKQAGVRPN--EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYG 237 (461)
Q Consensus 165 ~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 237 (461)
+...++-+.|..+|+..... +..+ ...|..+|+.-+.-|++..+..+-+++.. +.|...+.......|+
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e---~~pQen~~evF~Sry~ 546 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE---LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH---HcCcHhHHHHHHHHHh
Confidence 56677777788888754332 2222 34677777777777888777777777754 3455444444444444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.55 E-value=3.6 Score=37.52 Aligned_cols=60 Identities=8% Similarity=-0.020 Sum_probs=26.6
Q ss_pred HHHHHHHHHhccCCHH---HHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 012539 91 SMVSVLSACTHLGALD---QGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK 151 (461)
Q Consensus 91 t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 151 (461)
++..++.++...+..+ ++..+.+.+.+.. +..+.++-.-++.+.+.++.+++.+++.+|.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 3444445554444332 3333444443322 2223333333444445556666666665554
|
It is also involved in sporulation []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.45 E-value=1.1 Score=35.77 Aligned_cols=56 Identities=18% Similarity=0.180 Sum_probs=29.5
Q ss_pred HhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCc
Q 012539 237 GRAGRLDEALDVINKM----PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 237 ~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
.+.|++++|.+.|+.+ |..| ....--.++.++.+.+++++|...+++.++++|.++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 3455555555555555 2112 122334455556666666666666666666666543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.45 E-value=1.7 Score=39.69 Aligned_cols=112 Identities=12% Similarity=0.043 Sum_probs=54.1
Q ss_pred cCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH--HHH--HHHHHhhcCcHHHH
Q 012539 137 CGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT--FVS--VLRGCCVVGLVEEG 209 (461)
Q Consensus 137 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~--ll~~~~~~g~~~~a 209 (461)
.|+..+|-..++++.+ .|..+|.--=.++...|+.+.-...+++.... ..||... |.. ..-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4555555555555542 35555555555666666666655555555432 2233222 211 11122345556666
Q ss_pred HHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 210 REHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 210 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
++.-++.. .+.| |...-.++...+.-.|++.++.++..+-
T Consensus 195 Ek~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 55555443 2222 2333344455555556666666655544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.42 E-value=2.7 Score=41.56 Aligned_cols=161 Identities=14% Similarity=0.073 Sum_probs=105.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHhh----cCcHHHHHHHHHHhhhhcCCccChh
Q 012539 158 WTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNE-----VTFVSVLRGCCV----VGLVEEGREHFDSMRREYGIEPWLE 227 (461)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~ 227 (461)
...+++...-.|+-+.+++++.+..+.+ +.-.. .+|..++..+.. ....+.+.+++..+.++ -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3445555666889999999998876532 22211 123333333332 45778899999999764 56655
Q ss_pred HHHHH-HHHHHhcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHH-H
Q 012539 228 HYGCL-VDLYGRAGRLDEALDVINKMPM-K-----PHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL-S 299 (461)
Q Consensus 228 ~~~~l-i~~~~~~g~~~~A~~~~~~~~~-~-----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l-~ 299 (461)
.|... ...+...|++++|.+.|++.-. + .....+--+.-.+....++++|...+..+.+...-+...|..+ +
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 55433 4566778999999999997621 1 1222344444557778899999999999998776655555544 4
Q ss_pred HHHhhcCCh-------hHHHHHHHHHHhC
Q 012539 300 NIYAESKNW-------DRVINVRQIMKAK 321 (461)
Q Consensus 300 ~~~~~~g~~-------~~a~~~~~~m~~~ 321 (461)
-++...|+. ++|.+++.+....
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 445677888 7888888876543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.40 E-value=2.2 Score=40.63 Aligned_cols=235 Identities=11% Similarity=0.091 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHh--
Q 012539 23 VVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACT-- 100 (461)
Q Consensus 23 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~-- 100 (461)
+.+|----.-+...++-+.|+...+.-..-.+..---+...|--..+-++....|++..+. + ..-| ..+.+=+
T Consensus 302 ~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~-L---~r~y-s~~~s~~~s 376 (660)
T COG5107 302 EEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQD-L---KRKY-SMGESESAS 376 (660)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhcccHHHHhhhHHHHHHH-H---HHHH-hhhhhhhhc
Confidence 3444433344455677788888776644322221112233344444555555555554321 0 0001 1111111
Q ss_pred -ccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHhCCChHHH
Q 012539 101 -HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-----RNVYTWTSVIGGLAMNGAGEKS 174 (461)
Q Consensus 101 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A 174 (461)
.-|+++...+++-.-+ ..-..+|..+++.-.+..-++.|+.+|-+..+ +++..++++|.-++ .|+..-|
T Consensus 377 ~~D~N~e~~~Ell~kr~----~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta 451 (660)
T COG5107 377 KVDNNFEYSKELLLKRI----NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATA 451 (660)
T ss_pred cccCCccccHHHHHHHH----hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchH
Confidence 1233432222221111 12345677788888888889999999988764 57888999998877 5778899
Q ss_pred HHHHHHHHHcCCCCCHHHH-HHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC--hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012539 175 LELFSLMKQAGVRPNEVTF-VSVLRGCCVVGLVEEGREHFDSMRREYGIEPW--LEHYGCLVDLYGRAGRLDEALDVINK 251 (461)
Q Consensus 175 ~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (461)
..+|+-=... -||...| ...+..+...++-+.|+.+|+..+.+ +..+ ...|..+|+--..-|++..+..+-+.
T Consensus 452 ~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~r 527 (660)
T COG5107 452 YNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEER 527 (660)
T ss_pred HHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHH
Confidence 9999865442 3454443 45667778899999999999966542 3333 56899999999999999988877776
Q ss_pred C-CCCCCHHHHHHHHHHHHhc
Q 012539 252 M-PMKPHAGAWGALLNACRMY 271 (461)
Q Consensus 252 ~-~~~p~~~~~~~ll~~~~~~ 271 (461)
+ ..-|...+-..+.+.|.-.
T Consensus 528 f~e~~pQen~~evF~Sry~ik 548 (660)
T COG5107 528 FRELVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HHHHcCcHhHHHHHHHHHhhh
Confidence 6 2234444444444444433
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.40 E-value=2.1 Score=34.24 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=21.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 012539 94 SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136 (461)
Q Consensus 94 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 136 (461)
.++..+...+.......+++.+.+.+ +.+....+.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444455555555555555544 2444455555555554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.36 E-value=8.9 Score=41.22 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=18.2
Q ss_pred HHHHHHHHHcC--ChHHHHHHHHHHHH
Q 012539 58 NAMLAGYAQCG--KSREALHLFHLMQI 82 (461)
Q Consensus 58 ~~li~~~~~~g--~~~~A~~~~~~m~~ 82 (461)
-.+|.+|++.+ ..++|+....+.+.
T Consensus 794 ~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 794 LFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 35778888887 66777777777664
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.93 Score=44.18 Aligned_cols=151 Identities=14% Similarity=0.064 Sum_probs=83.3
Q ss_pred cCCchHHHHHHh--cCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012539 5 LGCLGYCQKVFD--GIH-EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81 (461)
Q Consensus 5 ~g~~~~A~~~~~--~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 81 (461)
.|+++++.++.. ++. .-+..-.+.++..+-+.|-.+.|+.+-.. +. .-.....+.|+.+.|.++.++
T Consensus 274 ~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-----~~---~rFeLAl~lg~L~~A~~~a~~-- 343 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD-----PD---HRFELALQLGNLDIALEIAKE-- 343 (443)
T ss_dssp TT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS------HH---HHHHHHHHCT-HHHHHHHCCC--
T ss_pred cCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC-----hH---HHhHHHHhcCCHHHHHHHHHh--
Confidence 466677555443 122 11245578888888888888888887432 21 223344567777777665432
Q ss_pred HCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHH
Q 012539 82 IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161 (461)
Q Consensus 82 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 161 (461)
.++...|..|.......|+++.|+..+.+... +..|+-.|.-.|+.+.-.++-+....++- ++..
T Consensus 344 ----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~--~n~a 408 (443)
T PF04053_consen 344 ----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD--INIA 408 (443)
T ss_dssp ----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---HHHH
T ss_pred ----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC--HHHH
Confidence 23566777777777777777777777665432 34466667777777666666655443321 3444
Q ss_pred HHHHHhCCChHHHHHHHHH
Q 012539 162 IGGLAMNGAGEKSLELFSL 180 (461)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~ 180 (461)
..++...|+.++..+++.+
T Consensus 409 f~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 409 FQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 4445555666666666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=3.1 Score=40.05 Aligned_cols=157 Identities=9% Similarity=0.054 Sum_probs=98.7
Q ss_pred HHH--HHHHHHHHhCC-----ChHHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHhh---------cCcHHHHHHHHHHhh
Q 012539 156 YTW--TSVIGGLAMNG-----AGEKSLELFSLMKQ-AGVRPN-EVTFVSVLRGCCV---------VGLVEEGREHFDSMR 217 (461)
Q Consensus 156 ~~~--~~li~~~~~~g-----~~~~A~~~~~~m~~-~g~~p~-~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~ 217 (461)
..| ...+.+..... ..+.|+.+|.+... ..+.|+ ...|..+..++.. ..+..+|.++-....
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 567 66666655422 34678889998872 236666 3344433333221 234455666666555
Q ss_pred hhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcch
Q 012539 218 REYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAG-AWGALLNACRMYKNTEMGELASRKLVELETKNHGA 294 (461)
Q Consensus 218 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 294 (461)
+ +.| |+.....+..++.-.|+++.|..+|++. ...||.. +|....-.+.-.|+.++|...+++..++.|....+
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3 333 5666667777778888899999999888 5567655 55555555677899999999999999999885432
Q ss_pred --HHHHHHHHhhcCChhHHHHHHH
Q 012539 295 --YVLLSNIYAESKNWDRVINVRQ 316 (461)
Q Consensus 295 --~~~l~~~~~~~g~~~~a~~~~~ 316 (461)
....+..|... ..++|++++-
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHh
Confidence 22333455554 3566666553
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.06 E-value=3.8 Score=35.81 Aligned_cols=200 Identities=12% Similarity=0.067 Sum_probs=107.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--HHHHHHHHHHHHhC
Q 012539 91 SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERN--VYTWTSVIGGLAMN 168 (461)
Q Consensus 91 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~ 168 (461)
.|.....+|-...+++++...+.+..+. .+.+...|.+ ...++.|.-+.+++.+-+ +..|+--...|..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4555556666777777777766665532 1222222221 233455555555555432 34466667778888
Q ss_pred CChHHHHHHHHHHHH--cCCCCCH--HHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHH
Q 012539 169 GAGEKSLELFSLMKQ--AGVRPNE--VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244 (461)
Q Consensus 169 g~~~~A~~~~~~m~~--~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 244 (461)
|.++.|-..+++.-+ .++.|+. ..|.--+......++...| ...+......|.+...+++
T Consensus 105 GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma----------------~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA----------------FELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH----------------HHHHHHhhhHhhhhHHhhH
Confidence 887777777766533 2344442 1222222222222222222 2334445556667777777
Q ss_pred HHHHHHhCC-------CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhc----cCCCcchHHHHHHHHhhcCChhHHH
Q 012539 245 ALDVINKMP-------MKPHAG-AWGALLNACRMYKNTEMGELASRKLVEL----ETKNHGAYVLLSNIYAESKNWDRVI 312 (461)
Q Consensus 245 A~~~~~~~~-------~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~a~ 312 (461)
|-..+.+-. .-|+.- .+-+.|-.+.-..++..|++.++.-.+. .|.+..+...|+.+|- .|+.+++.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHH
Confidence 666554431 112321 3444444455566888888888875543 3556667778887774 56666665
Q ss_pred HHH
Q 012539 313 NVR 315 (461)
Q Consensus 313 ~~~ 315 (461)
++.
T Consensus 248 kvl 250 (308)
T KOG1585|consen 248 KVL 250 (308)
T ss_pred HHH
Confidence 554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.99 E-value=4.1 Score=35.95 Aligned_cols=177 Identities=15% Similarity=0.083 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCC------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHHHHHHH
Q 012539 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKER------NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSV 196 (461)
Q Consensus 124 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l 196 (461)
...|+. +..-.+.|++++|.+.|+.+..+ ...+--.++-++-+.+++++|+..+++....- -.|| .-|..-
T Consensus 35 ~~LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~Y 112 (254)
T COG4105 35 SELYNE-GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYY 112 (254)
T ss_pred HHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHH
Confidence 344443 33345678888888888877642 22344555667777888888888888876642 2233 233333
Q ss_pred HHHHhh---c----CcH---HHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH-H-HH
Q 012539 197 LRGCCV---V----GLV---EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAW-G-AL 264 (461)
Q Consensus 197 l~~~~~---~----g~~---~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~-~-~l 264 (461)
|.+.+. . .+. .+|..-|+.++.+ -|+.. -..+|..-+..+ .|.... . .+
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r---yPnS~-------------Ya~dA~~~i~~~---~d~LA~~Em~I 173 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR---YPNSR-------------YAPDAKARIVKL---NDALAGHEMAI 173 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHH---CCCCc-------------chhhHHHHHHHH---HHHHHHHHHHH
Confidence 333321 1 122 2233333333332 12210 011111111111 011111 1 22
Q ss_pred HHHHHhcCChHHHHHHHHHHhhccCCCcc---hHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 265 LNACRMYKNTEMGELASRKLVELETKNHG---AYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 265 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
..-|.+.|.+..|..-++.+.+.-|+... .+..+..+|...|..++|...-+-+...
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 23378889999999999999887665433 5667788899999999998887766543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.97 E-value=8.4 Score=39.45 Aligned_cols=146 Identities=13% Similarity=0.101 Sum_probs=94.2
Q ss_pred ccCCchHHHHHHhcCCC--C---CHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 012539 4 ELGCLGYCQKVFDGIHE--P---DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFH 78 (461)
Q Consensus 4 ~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 78 (461)
+.+.+++|..+.+.... | -..++...|..+.-.|++++|-...-.|...+..-|---+..++..++......+
T Consensus 368 ~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~-- 445 (846)
T KOG2066|consen 368 EKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY-- 445 (846)
T ss_pred HhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc--
Confidence 45677888888766442 2 3467888899999999999999999889888888888888888887776554332
Q ss_pred HHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHH------------------HHHHcCCCCchHHHHHHHHHHHhcCCH
Q 012539 79 LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHV------------------YIERNRLKMTVTLGTALVDMYSKCGNM 140 (461)
Q Consensus 79 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~------------------~~~~~~~~~~~~~~~~li~~~~~~g~~ 140 (461)
+.....+.+...|..+|-.+.. .+...-.++.. +..+. ..+...-..|+..|...+++
T Consensus 446 -lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~LYl~d~~Y 521 (846)
T KOG2066|consen 446 -LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAHLYLYDNKY 521 (846)
T ss_pred -CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHHHHHHccCh
Confidence 2211122345566666666554 22211111111 11111 11223444599999999999
Q ss_pred HHHHHHHHhcCCCCH
Q 012539 141 NKAMDFFWGMKERNV 155 (461)
Q Consensus 141 ~~A~~~~~~~~~~~~ 155 (461)
++|.+++-...++++
T Consensus 522 ~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 522 EKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHHhccChHH
Confidence 999999988876644
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=1.4 Score=42.28 Aligned_cols=117 Identities=9% Similarity=0.036 Sum_probs=86.0
Q ss_pred cHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 012539 205 LVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRA---------GRLDEALDVINKM-PMKP-HAGAWGALLNACRMYK 272 (461)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~ 272 (461)
..+.|..+|.+......+.|+ ...|..+...+... ....+|.++.++. ...| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 456788889888744456775 45565555544322 2344566666555 3344 5556666666667778
Q ss_pred ChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 273 NTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 273 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
+.+.|...|+++..++|+.+.+|........-.|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999986554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.79 E-value=6.8 Score=38.05 Aligned_cols=143 Identities=7% Similarity=-0.047 Sum_probs=77.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 012539 60 MLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139 (461)
Q Consensus 60 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 139 (461)
++.-.-+..++..-+++-++.++ +.||..+.-.++ +--......++++++++..+.|-. .+........
T Consensus 174 IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~-------~lg~s~~~~~- 242 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA-------SLGKSQFLQH- 242 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH-------hhchhhhhhc-
Confidence 34444455666666666666665 456654433332 223445678888888887765411 0100000000
Q ss_pred HHHHHHHHHhcCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCcHHHHHHHHH
Q 012539 140 MNKAMDFFWGMKERN----VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP-NEVTFVSVLRGCCVVGLVEEGREHFD 214 (461)
Q Consensus 140 ~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 214 (461)
.-..++....++ +.+-..+..+.-+.|+.++|++.|++|.+....- +......|+.++...+...++..++.
T Consensus 243 ---~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 243 ---HGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred ---ccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 001111122222 2233445566667788888888888886542111 23345567778888888888888877
Q ss_pred Hh
Q 012539 215 SM 216 (461)
Q Consensus 215 ~~ 216 (461)
+.
T Consensus 320 kY 321 (539)
T PF04184_consen 320 KY 321 (539)
T ss_pred Hh
Confidence 65
|
The molecular function of this protein is uncertain. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.64 E-value=8.2 Score=38.26 Aligned_cols=179 Identities=11% Similarity=0.100 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 012539 126 LGTALVDMYSKCGNMNKAMDFFWGMKER---NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202 (461)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 202 (461)
+|..-++.-.+.|+.+.+.-.|++..-| =...|--.+.-.-..|+.+-|-.++....+--++-...+-..-...+-.
T Consensus 299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~ 378 (577)
T KOG1258|consen 299 NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEES 378 (577)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHh
Confidence 3334444444444444444444444332 1122333333333346666666555555443222222222111222345
Q ss_pred cCcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHHH-----HHhcC
Q 012539 203 VGLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAGRLDEAL---DVINKM-PMKPHAGAWGALLNA-----CRMYK 272 (461)
Q Consensus 203 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll~~-----~~~~~ 272 (461)
.|+...|..+++.+..+ . |+ +..-..-+....+.|..+.+. .++... +.+-+..+...+.-- +...+
T Consensus 379 ~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~ 455 (577)
T KOG1258|consen 379 NGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRE 455 (577)
T ss_pred hccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhc
Confidence 78999999999988764 3 54 333344456667788888877 444443 222233322222221 45567
Q ss_pred ChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCC
Q 012539 273 NTEMGELASRKLVELETKNHGAYVLLSNIYAESKN 307 (461)
Q Consensus 273 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 307 (461)
+.+.|..++.++.+..|++...|..+++.....+.
T Consensus 456 d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 456 DADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred CHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 88999999999999999998888888887776653
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.59 E-value=1.3 Score=36.31 Aligned_cols=135 Identities=15% Similarity=0.035 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchH-HHHHH-
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEV-SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT-LGTAL- 130 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l- 130 (461)
-..|..-+. .++.+..++|+..|..+.+.|...-++ ...-........|+...|...|+++-+....|-+. -...|
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 344444444 356677888888888887776543222 12222334567778888888888877654444332 11111
Q ss_pred -HHHHHhcCCHHHHHHHHHhcCCC-C---HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 012539 131 -VDMYSKCGNMNKAMDFFWGMKER-N---VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189 (461)
Q Consensus 131 -i~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 189 (461)
.-.+...|.+++...-.+-+..+ + ...-.+|.-+-.+.|++.+|.+.|.++......|-
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 22345678888877777766532 2 23455666677788888888888888866444443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.59 E-value=3.1 Score=33.26 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=18.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHhC
Q 012539 130 LVDMYSKCGNMNKAMDFFWGMKER---NVYTWTSVIGGLAMN 168 (461)
Q Consensus 130 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~ 168 (461)
++..+.+.+.......+++.+... +....+.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 444444445555555555544322 233445555555443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.15 Score=29.22 Aligned_cols=32 Identities=22% Similarity=0.104 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhccCC
Q 012539 259 GAWGALLNACRMYKNTEMGELASRKLVELETK 290 (461)
Q Consensus 259 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 290 (461)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666777777777777777777777777775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.95 Score=35.21 Aligned_cols=89 Identities=24% Similarity=0.228 Sum_probs=53.9
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCc----chHHHHHHHHhhcCCh
Q 012539 235 LYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNH----GAYVLLSNIYAESKNW 308 (461)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~ 308 (461)
+++..|+++.|++.|.+. ..-| ....||.-..+++-.|+.++|..-++++.++--+.. .+|.--...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 455666777777666655 2222 444666666677777777777777777666532211 2455555566677777
Q ss_pred hHHHHHHHHHHhCCC
Q 012539 309 DRVINVRQIMKAKGV 323 (461)
Q Consensus 309 ~~a~~~~~~m~~~g~ 323 (461)
+.|..=|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 777777776665553
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.27 Score=28.04 Aligned_cols=32 Identities=31% Similarity=0.225 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhccCCC
Q 012539 260 AWGALLNACRMYKNTEMGELASRKLVELETKN 291 (461)
Q Consensus 260 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 291 (461)
.|..+...+...|++++|...++++.+++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45556666777777777777777777777653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.5 Score=42.45 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 260 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
++..++..+...|+.+.+...++++...+|-+...|..++.+|.+.|+...|+..|+.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4556667777788888888888888899998888999999999999999999998888876
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.04 E-value=2 Score=38.08 Aligned_cols=100 Identities=16% Similarity=0.166 Sum_probs=60.5
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCH-HHHHHHH
Q 012539 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM----PMKPHA-GAWGALL 265 (461)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~-~~~~~ll 265 (461)
.|+.-+. +...|++..|.+-|...++.+.-.+ ....+-.|...+...|++++|..+|..+ |..|.. ..+--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4555444 3455667888887777776432111 2334555777777777777777776655 323322 3455555
Q ss_pred HHHHhcCChHHHHHHHHHHhhccCCCc
Q 012539 266 NACRMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 266 ~~~~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
......|+.++|...++++.+..|...
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 556677777777777777777776654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.78 Score=41.27 Aligned_cols=72 Identities=15% Similarity=0.231 Sum_probs=46.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCcCHHHHHHHHH
Q 012539 26 QTAMISACAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCGKSREALHLFHLMQI-----HDVKLNEVSMVSVLS 97 (461)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~t~~~ll~ 97 (461)
+..++..+..+|+++.+...++++... |...|..|+.+|.+.|+...|+..|+++.. .|+.|...+......
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~ 235 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEE 235 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHH
Confidence 445566666777777777777766543 455777777777777777777777776654 456665555444333
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.93 E-value=8.4 Score=36.33 Aligned_cols=148 Identities=11% Similarity=-0.019 Sum_probs=78.1
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC--hh
Q 012539 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP---NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW--LE 227 (461)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 227 (461)
....+|..++..+.+.|+++.|...+.++...+..+ +......-+...-..|+..+|...++..... .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 345678888888999999999999998887643111 2233333455566678888888888777652 11111 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHh------cCChHHHHHHHHHHhhccCCCcchHHHHHH
Q 012539 228 HYGCLVDLYGRAGRLDEALDVI-NKMPMKPHAGAWGALLNACRM------YKNTEMGELASRKLVELETKNHGAYVLLSN 300 (461)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~~~~------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 300 (461)
....+...+.. ..+.....- .......-...+..+..-+.. .+..+.+...|+.+.+..|....+|..+..
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 000000000 000000001122222222223 377888889999999998887777776665
Q ss_pred HHh
Q 012539 301 IYA 303 (461)
Q Consensus 301 ~~~ 303 (461)
.+.
T Consensus 301 ~~~ 303 (352)
T PF02259_consen 301 FND 303 (352)
T ss_pred HHH
Confidence 554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.5 Score=29.07 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012539 55 IAWNAMLAGYAQCGKSREALHLFHLMQIH 83 (461)
Q Consensus 55 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 83 (461)
.+|..+...|.+.|++++|.++|++.++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35666777777777777777777777764
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.75 E-value=2.6 Score=32.86 Aligned_cols=51 Identities=14% Similarity=0.307 Sum_probs=29.2
Q ss_pred HHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 133 MYSKCGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 133 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
+.+..|+++.|++.|.+.. ......||.-..++.-+|+.++|++-+++..+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 3455566666666665543 23455566666666666666666666655544
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.73 E-value=3.7 Score=37.75 Aligned_cols=92 Identities=15% Similarity=0.262 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCC-------CCHHHHHHHHHHHHhCCC----hHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHhhcCc-
Q 012539 140 MNKAMDFFWGMKE-------RNVYTWTSVIGGLAMNGA----GEKSLELFSLMKQAGVRPN-E-VTFVSVLRGCCVVGL- 205 (461)
Q Consensus 140 ~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~-~-~~~~~ll~~~~~~g~- 205 (461)
...|..+|+.|++ ++-..+.+|+.. ...+ .+.+...|+.+.+.|+..+ . .....++..+.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 3445666666653 233344444433 2222 3566777888877776664 2 333334433332222
Q ss_pred -HHHHHHHHHHhhhhcCCccChhHHHHHHH
Q 012539 206 -VEEGREHFDSMRREYGIEPWLEHYGCLVD 234 (461)
Q Consensus 206 -~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 234 (461)
+..+.++++.+.+. |+++...+|..+.-
T Consensus 197 ~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 197 KVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 44677888887665 88887777665543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.29 Score=28.59 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQ 81 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~ 81 (461)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677777788888888888777744
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.65 E-value=4 Score=31.97 Aligned_cols=65 Identities=14% Similarity=0.182 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCc
Q 012539 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIE 223 (461)
Q Consensus 157 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 223 (461)
.....+....+.|+-++-.++++.+.+. -.|++.....+..||.+.|+..++.+++.++-++ |++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-chH
Confidence 3455667778888888888888887653 4677777888888999999999998888887664 543
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.61 E-value=6.9 Score=34.56 Aligned_cols=51 Identities=12% Similarity=0.146 Sum_probs=22.1
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhhcCcHHHHHHHHHH
Q 012539 164 GLAMNGAGEKSLELFSLMKQAGVRPN---EVTFVSVLRGCCVVGLVEEGREHFDS 215 (461)
Q Consensus 164 ~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~ 215 (461)
-|.+.|.+..|..-+++|.+. .+-. ...+-.+..+|...|..++|...-.-
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 344555555555555555443 1111 11223334444445555444444443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.56 E-value=1.4 Score=40.11 Aligned_cols=159 Identities=10% Similarity=0.010 Sum_probs=116.9
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHH----HHHHHhcCCH
Q 012539 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCL----VDLYGRAGRL 242 (461)
Q Consensus 167 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~ 242 (461)
-.|+..+|-..++++.+. .+.|...+.-.=.+|...|+.+.-...++++.. ...|+...|..+ .-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888999999999876 566777777777899999999999999998874 345665444443 3445689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCC----CcchHHHHHHHHhhcCChhHHHHHHH
Q 012539 243 DEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETK----NHGAYVLLSNIYAESKNWDRVINVRQ 316 (461)
Q Consensus 243 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 316 (461)
++|++.-++. .+.| |...-.+....+...|+..++.++..+-...=.. -...|-...-.+...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998887 4444 5557777777888999999999887765432111 12356677778888899999999999
Q ss_pred HHHhCCCccCCc
Q 012539 317 IMKAKGVKKLPG 328 (461)
Q Consensus 317 ~m~~~g~~~~~~ 328 (461)
.=.-..+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 765544444433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.37 E-value=9.7 Score=39.34 Aligned_cols=177 Identities=14% Similarity=0.067 Sum_probs=98.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCch--HHHHHHHHHHHhcCCHHHHHHHHHhcCC-CCHHHHHHHHHHHHhC
Q 012539 92 MVSVLSACTHLGALDQGRWAHVYIERNRLKMTV--TLGTALVDMYSKCGNMNKAMDFFWGMKE-RNVYTWTSVIGGLAMN 168 (461)
Q Consensus 92 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~ 168 (461)
....+....+...++.|..+- ...+.+++. .+.....+-+.+.|++++|...|-+... -++ ..+|.-|...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LA---k~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLA---KSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCH
Confidence 344555555666666665543 233333331 2223334445567888888776655432 111 1234455555
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHH
Q 012539 169 GAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248 (461)
Q Consensus 169 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 248 (461)
.+..+-..+++.+.+.|+.-. ..-..|+.+|.+.++.++-.++.+..- + |.. ..-....+..+.+.+-+++|..+
T Consensus 411 q~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCC-C-cce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 566666677777777775533 333457778888888877777665442 1 211 11234456667777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 012539 249 INKMPMKPHAGAWGALLNACRMYKNTEMGELASRKL 284 (461)
Q Consensus 249 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 284 (461)
-.+... +......++ -..+++++|.+.++.+
T Consensus 486 A~k~~~--he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFKK--HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcc--CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 666542 333333333 3457777777765543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.25 E-value=6.8 Score=33.65 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=26.3
Q ss_pred chHHHHHHHHhhcCChhHHHHHHHHHHhCCC
Q 012539 293 GAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 323 (461)
.+|.-|..-|...|+.++|..+|+.....++
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 5888999999999999999999998765544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.17 E-value=5.9 Score=32.74 Aligned_cols=57 Identities=18% Similarity=0.145 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 012539 229 YGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVE 286 (461)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 286 (461)
+..+++.+...|++-+|+++.+..+ ..+......++.+....+|...-..+++-..+
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~-~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYH-KVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC-CcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556677777788888887777653 12223334455555555555554444444443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.05 E-value=13 Score=40.08 Aligned_cols=112 Identities=12% Similarity=0.079 Sum_probs=63.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHH
Q 012539 131 VDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210 (461)
Q Consensus 131 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 210 (461)
++.--+.|-+++|+.++.-=.+.-...|.+-..-+.....+++|.-+|+..-+. ...+.+|...|++.+|.
T Consensus 915 ~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l 985 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREAL 985 (1265)
T ss_pred HHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHH
Confidence 333344555555555543322222334444444555567777777777654321 12456777788888888
Q ss_pred HHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012539 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP 253 (461)
Q Consensus 211 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 253 (461)
.+..++.. +-.--..+-..|+.-+...++.-+|-++..+..
T Consensus 986 ~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 986 SLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 87776632 111112333567777777788877777777764
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.04 E-value=5.8 Score=32.38 Aligned_cols=87 Identities=18% Similarity=0.126 Sum_probs=53.1
Q ss_pred hhcCcHHHHHHHHHHhhhhcCCccCh-hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHH
Q 012539 201 CVVGLVEEGREHFDSMRREYGIEPWL-EHYGCLVDLYGRAGRLDEALDVINKMP-MKPHAGAWGALLNACRMYKNTEMGE 278 (461)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~ 278 (461)
...++.+++..++..+. -+.|.. ..-..-...+...|++.+|..+|+++. ..|....-.+|+..|....+-..=.
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 45667777777777764 455642 333333445677888888888888883 2345555566666666555544555
Q ss_pred HHHHHHhhccCC
Q 012539 279 LASRKLVELETK 290 (461)
Q Consensus 279 ~~~~~~~~~~p~ 290 (461)
...+++.+..++
T Consensus 98 ~~A~evle~~~d 109 (160)
T PF09613_consen 98 RYADEVLESGAD 109 (160)
T ss_pred HHHHHHHhcCCC
Confidence 555556655543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.01 E-value=13 Score=36.27 Aligned_cols=98 Identities=14% Similarity=0.116 Sum_probs=67.7
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHH--HHHHHHHHHH
Q 012539 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPM--KPHAG--AWGALLNACR 269 (461)
Q Consensus 194 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~--~~~~ll~~~~ 269 (461)
..+..++.+.|+.++|.+.++++.++............|+..+...+.+.++..++.+... -|... .|++.+-..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 4466666789999999999999987643333455778899999999999999999988731 24433 5666554444
Q ss_pred hcCCh---------------HHHHHHHHHHhhccCCC
Q 012539 270 MYKNT---------------EMGELASRKLVELETKN 291 (461)
Q Consensus 270 ~~~~~---------------~~a~~~~~~~~~~~p~~ 291 (461)
..++. ..|.++..++.+.+|.-
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 44331 23456677777777654
|
The molecular function of this protein is uncertain. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.43 Score=27.88 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHH
Q 012539 157 TWTSVIGGLAMNGAGEKSLELFSLM 181 (461)
Q Consensus 157 ~~~~li~~~~~~g~~~~A~~~~~~m 181 (461)
+|..|...|.+.|++++|+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3555666666666666666666664
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.56 E-value=9.7 Score=35.40 Aligned_cols=41 Identities=12% Similarity=0.278 Sum_probs=23.6
Q ss_pred HcCCHHHHHHHHhhCCCC------ChhHHHHHHHHHHHcCChHHHHH
Q 012539 35 KCGDVDLARKMFDEMPER------DPIAWNAMLAGYAQCGKSREALH 75 (461)
Q Consensus 35 ~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~ 75 (461)
...+.++|+..|.+...+ -..++..+..+..+.|.+++++.
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 355666666666654433 12355566666666676666554
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.53 E-value=33 Score=40.11 Aligned_cols=64 Identities=11% Similarity=0.036 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCc
Q 012539 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324 (461)
Q Consensus 259 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 324 (461)
.+|-.....++..|.++.|....-.+.+..++ ..+.-.+......|+...|+.++++..+...+
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESRLP--EIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcccc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 37888888899999999999888887777754 57888899999999999999999998866543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.48 Score=27.03 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012539 55 IAWNAMLAGYAQCGKSREALHLFHLMQI 82 (461)
Q Consensus 55 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 82 (461)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4677778888888888888888887776
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.30 E-value=5.6 Score=33.40 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCC------HHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 126 LGTALVDMYSKCGNMNKAMDFFWGMKERN------VYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
.+..+.+.|.+.|+.++|.+.|.++.+.. +..+-.+|......+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45556666666666666666666655431 23455555555556666666655555543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.78 E-value=1.2 Score=40.24 Aligned_cols=92 Identities=7% Similarity=0.086 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhCCCC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHH
Q 012539 24 VCQTAMISACAKCGDVDLARKMFDEMPER---------DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVS 94 (461)
Q Consensus 24 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 94 (461)
.+...++..-.+..+++.+...+-++... ...+|-.++.-| ++++++.++..=++.|+-||.+++..
T Consensus 65 ~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky----~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 65 LTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKY----DPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred eehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHcc----ChHHHHHHHhCcchhccccchhhHHH
Confidence 33444444444455666666655544321 222333333222 55666666666666677777777777
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcC
Q 012539 95 VLSACTHLGALDQGRWAHVYIERNR 119 (461)
Q Consensus 95 ll~~~~~~~~~~~a~~~~~~~~~~~ 119 (461)
+++.+.+.+++..|.++.-.|+...
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHH
Confidence 7777777777776666666655543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.72 E-value=0.44 Score=27.45 Aligned_cols=30 Identities=13% Similarity=0.153 Sum_probs=18.3
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhcCCHHHHH
Q 012539 114 YIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144 (461)
Q Consensus 114 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 144 (461)
+.++.. |.+...|+.|...|...|++++|+
T Consensus 4 kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344433 445666666777777777777664
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=90.70 E-value=23 Score=36.68 Aligned_cols=301 Identities=7% Similarity=-0.070 Sum_probs=142.7
Q ss_pred ccCCchHHHHHHhcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHhhCCC-CC-hhHHHHHHHHHHHcCChHHHHHHHH
Q 012539 4 ELGCLGYCQKVFDGIHEPDV---VCQTAMISACAKCGDVDLARKMFDEMPE-RD-PIAWNAMLAGYAQCGKSREALHLFH 78 (461)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~ 78 (461)
+.|+...+.++...+..... ..|-.|..... ...+++....+++-+. |- ...-..-+..+.+.+++...+..+.
T Consensus 45 ~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~ 123 (644)
T PRK11619 45 DNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLM-NQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSP 123 (644)
T ss_pred HCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccc-cCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcC
Confidence 45666666666555532212 22333322211 2246666666666553 21 1122233344445667766665221
Q ss_pred HHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH-----------------
Q 012539 79 LMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMN----------------- 141 (461)
Q Consensus 79 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~----------------- 141 (461)
. .+.+...-.....+....|+.++|......+-..| ...+..++.+.+.+.+.|.+.
T Consensus 124 ~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~ 197 (644)
T PRK11619 124 E-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNT 197 (644)
T ss_pred C-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCH
Confidence 1 12344444455566666777666655555554444 333445555666555544433
Q ss_pred -HHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh--hcCcHHHHHHHHHHhhh
Q 012539 142 -KAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC--VVGLVEEGREHFDSMRR 218 (461)
Q Consensus 142 -~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~ 218 (461)
.|..+...+..........++..+ .+...+..++.. +.|+...-..++.++. ...+.+.|..++.....
T Consensus 198 ~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~ 269 (644)
T PRK11619 198 GLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVR 269 (644)
T ss_pred HHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 333222222111011111111111 112222221111 2223211111222222 23455778888877654
Q ss_pred hcCCccCh--hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchH
Q 012539 219 EYGIEPWL--EHYGCLVDLYGRAGRLDEALDVINKMP-MKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAY 295 (461)
Q Consensus 219 ~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 295 (461)
..++.+.. .....+.......+..++|...++... ...+...+..-+......++.+.+...+..|.........-.
T Consensus 270 ~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~ 349 (644)
T PRK11619 270 AQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWR 349 (644)
T ss_pred hcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhH
Confidence 43443332 233344333333333566777776652 222444444444455577788777777777654333444556
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHH
Q 012539 296 VLLSNIYAESKNWDRVINVRQIMK 319 (461)
Q Consensus 296 ~~l~~~~~~~g~~~~a~~~~~~m~ 319 (461)
.=+.+++...|+.++|...|+...
T Consensus 350 YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 350 YWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Confidence 667777777888888888888764
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.63 E-value=11 Score=32.87 Aligned_cols=24 Identities=4% Similarity=-0.079 Sum_probs=17.4
Q ss_pred HHhcCChHHHHHHHHHHhhccCCC
Q 012539 268 CRMYKNTEMGELASRKLVELETKN 291 (461)
Q Consensus 268 ~~~~~~~~~a~~~~~~~~~~~p~~ 291 (461)
-...+++..|+.+|+++.....++
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 356678889999999887654443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.53 E-value=2.2 Score=42.03 Aligned_cols=148 Identities=17% Similarity=0.072 Sum_probs=70.9
Q ss_pred cCCchHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012539 5 LGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHD 84 (461)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 84 (461)
.|+++.|..++-.+++ ..-+.++..+.++|-.++|+++-- .+| - -.....+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s~---D~d--~---rFelal~lgrl~iA~~la~e~---- 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELST---DPD--Q---RFELALKLGRLDIAFDLAVEA---- 663 (794)
T ss_pred hccccccccccccCch---hhhhhHHhHhhhccchHhhhhcCC---Chh--h---hhhhhhhcCcHHHHHHHHHhh----
Confidence 3555555555555442 334556666666777777666521 111 0 011223445555555544332
Q ss_pred CCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q 012539 85 VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGG 164 (461)
Q Consensus 85 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 164 (461)
.+..-|..|..+....+++..|.+.+...... ..|+-.|...|+-+....+-....+. -..|....+
T Consensus 664 --~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~~--g~~N~AF~~ 730 (794)
T KOG0276|consen 664 --NSEVKWRQLGDAALSAGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKKQ--GKNNLAFLA 730 (794)
T ss_pred --cchHHHHHHHHHHhhcccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHhh--cccchHHHH
Confidence 13445666666666666666666665554332 23444455555544333322222211 011222234
Q ss_pred HHhCCChHHHHHHHHH
Q 012539 165 LAMNGAGEKSLELFSL 180 (461)
Q Consensus 165 ~~~~g~~~~A~~~~~~ 180 (461)
|...|+++++++++.+
T Consensus 731 ~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 731 YFLSGDYEECLELLIS 746 (794)
T ss_pred HHHcCCHHHHHHHHHh
Confidence 4556666666666654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.28 E-value=5 Score=33.72 Aligned_cols=63 Identities=14% Similarity=0.116 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCH--HHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 012539 55 IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE--VSMVSVLSACTHLGALDQGRWAHVYIER 117 (461)
Q Consensus 55 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 117 (461)
..+..+...|.+.|+.++|++.|.++.+....|.. ..+..++..+.-.+++..+.....++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35667777777788888888877777765444433 3455666666777777777766665554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.21 E-value=1.2 Score=37.53 Aligned_cols=88 Identities=13% Similarity=0.093 Sum_probs=63.4
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCC
Q 012539 235 LYGRAGRLDEALDVINKM-PMKP------HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKN 307 (461)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~-~~~p------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 307 (461)
-+.+.|++++|..-|... ..-| -.+.|..-..+..+.+..+.|+.-..+.++++|....+..--+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355667777777666655 1111 123444445567788888999999999999998877777777888888899
Q ss_pred hhHHHHHHHHHHhCC
Q 012539 308 WDRVINVRQIMKAKG 322 (461)
Q Consensus 308 ~~~a~~~~~~m~~~g 322 (461)
+++|+.=|+.+.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999998888887643
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.13 E-value=0.68 Score=26.33 Aligned_cols=31 Identities=19% Similarity=0.053 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhccCC
Q 012539 260 AWGALLNACRMYKNTEMGELASRKLVELETK 290 (461)
Q Consensus 260 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 290 (461)
+|..+...+...|++++|...|++..++.|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555666677777777777777777777763
|
... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.43 E-value=0.93 Score=25.67 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012539 55 IAWNAMLAGYAQCGKSREALHLFHLMQI 82 (461)
Q Consensus 55 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 82 (461)
..|..+...|.+.|++++|++.|++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566777777788888888888777766
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.31 E-value=19 Score=33.82 Aligned_cols=68 Identities=12% Similarity=0.123 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCC----CcchHHHHHHHHhhcCChhHHHHHHHHHHhCCC
Q 012539 256 PHAGAWGALLNACRMYKNTEMGELASRKLVELETK----NHGAYVLLSNIYAESKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 256 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 323 (461)
....+|..+...+++.|+++.|...+.++....+. .+.....-+......|+..+|...++...+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 34458899999999999999999999999876522 345666678888899999999999988877433
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.98 E-value=3.5 Score=33.62 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=24.3
Q ss_pred hcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHhhccCCC
Q 012539 238 RAGRLDEALDVINKM-PMKPHAGAWGALLNA-CRMYKNTEMGELASRKLVELETKN 291 (461)
Q Consensus 238 ~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~p~~ 291 (461)
+.++.+++..++..+ -.+|.......+-.- +...|++.+|.++++.+.+..|..
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~ 77 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF 77 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 344555555555555 223333322222111 345555555555555554444443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.88 E-value=3.3 Score=33.20 Aligned_cols=53 Identities=8% Similarity=0.003 Sum_probs=33.6
Q ss_pred hcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 270 MYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 270 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
..++.+++..++..+.-+.|..+..-..-...+...|+|++|.+++++..+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 35666666666666666666666555555666666666666666666665544
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.98 E-value=19 Score=32.09 Aligned_cols=261 Identities=17% Similarity=0.163 Sum_probs=158.5
Q ss_pred CCCCHHHHHHHHHHH-HHcCCHHHHHHHHhhCCCC-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHH---CCC--
Q 012539 19 HEPDVVCQTAMISAC-AKCGDVDLARKMFDEMPER-------DPIAWNAMLAGYAQCGKSREALHLFHLMQI---HDV-- 85 (461)
Q Consensus 19 ~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~-- 85 (461)
.+||+..-|..-.+- .+...+++|+.-|++..+- .-.+.-.+|..+.+.|++++.++.|.+|+- ..+
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 457766544332221 2455789999999876532 223556789999999999999999998863 112
Q ss_pred CcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------
Q 012539 86 KLNEVSMVSVLSACTHLGALDQGRWAHVYIERN-----RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER------- 153 (461)
Q Consensus 86 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------- 153 (461)
.-+....++++...+...+.+.-...++.-++. +-..--.+-+.|...|...|++.+..++++++.+.
T Consensus 102 NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe 181 (440)
T KOG1464|consen 102 NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE 181 (440)
T ss_pred cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence 124456788888777777776666665543321 11112234456888899999999999998887631
Q ss_pred --------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHh-----hcCcHHHHHHHHHHhhhh
Q 012539 154 --------NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEVTFVSVLRGCC-----VVGLVEEGREHFDSMRRE 219 (461)
Q Consensus 154 --------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~-----~~g~~~~a~~~~~~~~~~ 219 (461)
-...|..=|..|....+-..-..+|++..... --|.+.. ..+|.-|. +.|.+++|-.=|-+.-+.
T Consensus 182 dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 182 DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 12567777888888888888888888775422 2344333 34555553 467888775444333343
Q ss_pred cCCc--cC---hhHHHHHHHHHHhcCCHHHHHHHHHh--C-CCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 012539 220 YGIE--PW---LEHYGCLVDLYGRAGRLDEALDVINK--M-PMK--PHAGAWGALLNACRMYKNTEMGELASRKLVE 286 (461)
Q Consensus 220 ~~~~--p~---~~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 286 (461)
+.-. |. ---|..|..++.+.|- .-|+. . |.+ |.......|+.+|.. +++.+-++++..-..
T Consensus 261 YDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~ 331 (440)
T KOG1464|consen 261 YDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSNRS 331 (440)
T ss_pred ccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhhc
Confidence 3222 22 2236667777777651 11111 1 333 555677888888754 455555555444333
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=87.16 E-value=10 Score=28.10 Aligned_cols=87 Identities=11% Similarity=0.126 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 012539 105 LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184 (461)
Q Consensus 105 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 184 (461)
-++|..|-+.+...+-. ...+--.=+..+...|+|++|..+.+.+.-||+..|-+|-.. +.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 45666666666554421 222222223445678999999999998888999999877553 567677777777777766
Q ss_pred CCCCCHHHHHH
Q 012539 185 GVRPNEVTFVS 195 (461)
Q Consensus 185 g~~p~~~~~~~ 195 (461)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 5 555555543
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.97 E-value=14 Score=36.87 Aligned_cols=150 Identities=17% Similarity=0.071 Sum_probs=103.6
Q ss_pred HhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHH
Q 012539 135 SKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD 214 (461)
Q Consensus 135 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 214 (461)
.-.|+++.|..++-.+++ ..-+.++.-+.++|..++|+++- ..|| .-|. ...+.|+++.|.++..
T Consensus 597 vmrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s-------~D~d-~rFe----lal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS-------TDPD-QRFE----LALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC-------CChh-hhhh----hhhhcCcHHHHHHHHH
Confidence 346778888777666663 23445556666777777776532 2233 2232 2346799999988876
Q ss_pred HhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcch
Q 012539 215 SMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGA 294 (461)
Q Consensus 215 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 294 (461)
+.. +..-|..|.++..+.|++..|.+.|.... -|..|+-.+...|+.+....+.....+.+..|.
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~-- 726 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL-- 726 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch--
Confidence 553 45679999999999999999999998753 355677777788888777777666666655553
Q ss_pred HHHHHHHHhhcCChhHHHHHHHH
Q 012539 295 YVLLSNIYAESKNWDRVINVRQI 317 (461)
Q Consensus 295 ~~~l~~~~~~~g~~~~a~~~~~~ 317 (461)
-..+|...|+++++.+++.+
T Consensus 727 ---AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 727 ---AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ---HHHHHHHcCCHHHHHHHHHh
Confidence 34567788999999988864
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.84 E-value=1.7 Score=25.88 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012539 55 IAWNAMLAGYAQCGKSREALHLFHLMQI 82 (461)
Q Consensus 55 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 82 (461)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677777788888888888887777654
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.82 E-value=5 Score=29.79 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHH
Q 012539 173 KSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234 (461)
Q Consensus 173 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 234 (461)
+..+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5666666666677888988899999999999999999999998876544 33336666654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.56 E-value=6.1 Score=29.01 Aligned_cols=63 Identities=14% Similarity=0.186 Sum_probs=46.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHH
Q 012539 170 AGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234 (461)
Q Consensus 170 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 234 (461)
+.-++.+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34466777777777778899999999999999999999999999877644332 3445655543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.30 E-value=5.2 Score=29.70 Aligned_cols=55 Identities=15% Similarity=0.182 Sum_probs=35.2
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHH
Q 012539 245 ALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299 (461)
Q Consensus 245 A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 299 (461)
++.-+-.+..-|++.+..+.+.+|++.+++..|.++++-+...-.+....|..++
T Consensus 32 glN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 32 GLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 3333333456688888999999999999999999999888765444333565554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=86.12 E-value=13 Score=35.85 Aligned_cols=140 Identities=7% Similarity=0.016 Sum_probs=85.9
Q ss_pred hhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHH
Q 012539 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM--PMKPHAGAWGALLNACRMYKNTEMGE 278 (461)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~ 278 (461)
...|++-.|-+-+...++.+ +.++.+.......+...|.++.+...+... .+.....+...++......|+.++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 34566666655444444432 334444444555677788898888888776 22345557777888888888899999
Q ss_pred HHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCccCCcccEEEeCCEEEEEEeC
Q 012539 279 LASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAG 344 (461)
Q Consensus 279 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~~ 344 (461)
...+.|...+..++.........--..|-++++...|++....+.+. ...|+..-.....|-.|
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~--~~g~v~~~~~~~~~~~~ 441 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET--QSGWVNFLSSTQYFNDG 441 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh--cccceeeeccceeccCc
Confidence 88888886555444443333333445677888888888876654433 33455444333344333
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=86.01 E-value=6 Score=29.25 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=38.7
Q ss_pred HHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHH
Q 012539 31 SACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSM 92 (461)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 92 (461)
+.+.+.|++++|..+.+.+..||...|-+|-.. +.|..+++..-+.+|...| .|...+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 456677788888887777777777777776554 5566666666666666655 4444444
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.72 E-value=5.5 Score=29.24 Aligned_cols=51 Identities=14% Similarity=0.172 Sum_probs=35.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHH
Q 012539 249 INKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299 (461)
Q Consensus 249 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 299 (461)
+-.+..-|++.+..+.+.+|++.+|+..|.++++-+......+...|..++
T Consensus 33 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 33 LFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 333456688888888889999999999999988887744333333555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.95 E-value=0.97 Score=36.39 Aligned_cols=52 Identities=6% Similarity=0.038 Sum_probs=24.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHH
Q 012539 61 LAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAH 112 (461)
Q Consensus 61 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 112 (461)
+..+.+.+.+.....+++.+...+...+....+.++..|++.+..+....++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 3444445555555555555554443344555555555555554444444433
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.69 E-value=8.7 Score=32.67 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=9.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHH
Q 012539 225 WLEHYGCLVDLYGRAGRLDEA 245 (461)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A 245 (461)
|+..+.+|+..|.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 344444444444444444444
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.51 E-value=11 Score=32.08 Aligned_cols=74 Identities=15% Similarity=0.097 Sum_probs=44.6
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCHHHHHHHHHHHHhCCChH
Q 012539 100 THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-------ERNVYTWTSVIGGLAMNGAGE 172 (461)
Q Consensus 100 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~ 172 (461)
.+.|+ +.|.+.|-.+...+.-.++....+|...|. ..+.++|..++.... +.|+..+.+|++.|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 455566666666655556666666666555 455666666665443 246667777777777777776
Q ss_pred HHH
Q 012539 173 KSL 175 (461)
Q Consensus 173 ~A~ 175 (461)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 664
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=84.47 E-value=53 Score=33.88 Aligned_cols=89 Identities=11% Similarity=0.174 Sum_probs=46.0
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC------------hHHHHHHHHHHhh-------ccCCC
Q 012539 233 VDLYGRAGRLDEALDVINKMPMKPHAG--AWGALLNACRMYKN------------TEMGELASRKLVE-------LETKN 291 (461)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~~~~p~~~--~~~~ll~~~~~~~~------------~~~a~~~~~~~~~-------~~p~~ 291 (461)
..-+...|++++|..+|.-.+ ..|.+ ..|.+++-...... ...|..+.+.... ..+.+
T Consensus 421 A~~~e~~g~~~dAi~Ly~La~-~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~ 499 (613)
T PF04097_consen 421 AREAEERGRFEDAILLYHLAE-EYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKN 499 (613)
T ss_dssp HHHHHHCT-HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHH
T ss_pred HHHHHHCCCHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHH
Confidence 334556788899998888876 33322 55555555333322 2334444433332 11223
Q ss_pred cchHHHHHHH-----HhhcCChhHHHHHHHHHHhCCCcc
Q 012539 292 HGAYVLLSNI-----YAESKNWDRVINVRQIMKAKGVKK 325 (461)
Q Consensus 292 ~~~~~~l~~~-----~~~~g~~~~a~~~~~~m~~~g~~~ 325 (461)
..++..|+.. +...|+|++|.+.+++ .++-|
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~---L~liP 535 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQYEQALDIIEK---LDLIP 535 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH---TT-S-
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh---CCCCC
Confidence 3455554443 3588999999877775 44554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.44 E-value=2.8 Score=24.90 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012539 156 YTWTSVIGGLAMNGAGEKSLELFSLMK 182 (461)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 182 (461)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345556666666666666666666554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=84.14 E-value=23 Score=29.35 Aligned_cols=132 Identities=11% Similarity=0.046 Sum_probs=68.6
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 012539 74 LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT-VTLGTALVDMYSKCGNMNKAMDFFWGMKE 152 (461)
Q Consensus 74 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 152 (461)
++.++.+.+.+++|+...+..+++.+.+.|.+....++ +..++-+| ..+...|+..- +....+.++=-.|..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~---~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG---NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH---ccChHHHHHHHHHHH
Confidence 34555666677778888888888888877776554333 33333333 33333232221 222333333333333
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHh
Q 012539 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM 216 (461)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (461)
+=...+..++..+...|++-+|+++.+...... .++. ..++.+....++...-..+++-.
T Consensus 87 RL~~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~~---~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 87 RLGTAYEEIIEVLLSKGQVLEALRYARQYHKVD-SVPA---RKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred HhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCCH---HHHHHHHHHcCCHHHHHHHHHHH
Confidence 333345566677777888888887777642211 1122 33455555555554444444333
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.11 E-value=2 Score=24.25 Aligned_cols=27 Identities=30% Similarity=0.293 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQI 82 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 82 (461)
+|..+...|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566777777777778877777777665
|
... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.10 E-value=58 Score=34.06 Aligned_cols=191 Identities=13% Similarity=0.053 Sum_probs=101.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHH----HHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 012539 58 NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL----SACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133 (461)
Q Consensus 58 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 133 (461)
..-+....+...++-|+.+-+. .+ .|..+...+. +-+-+.|++++|...|-+.+.. ++|. .++.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 3445555666666667665433 22 2333333333 3345677788777766555443 1222 23444
Q ss_pred HHhcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHH
Q 012539 134 YSKCGNMNKAMDFFWGMKER---NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGR 210 (461)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 210 (461)
|....++.+-..+++.+.+. +...-+.|+.+|.+.++.++-.+..+.-- .|.. ..-+...+..|.+.+-.++|.
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 55555555555555555532 34455677788888887777666655433 2211 111334556666677777776
Q ss_pred HHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 012539 211 EHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271 (461)
Q Consensus 211 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 271 (461)
.+-... +..+ ..+--.+-..|++++|++.++.+|...-..+.+....-+..+
T Consensus 484 ~LA~k~----~~he-----~vl~ille~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll~h 535 (933)
T KOG2114|consen 484 LLATKF----KKHE-----WVLDILLEDLHNYEEALRYISSLPISELLRTLNKYGKILLEH 535 (933)
T ss_pred HHHHHh----ccCH-----HHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Confidence 665433 2211 123334566788888888888886432223333333333333
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=83.89 E-value=34 Score=31.20 Aligned_cols=229 Identities=10% Similarity=-0.033 Sum_probs=137.9
Q ss_pred HHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCH----HHHHHHHHHHHHcC
Q 012539 44 KMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGAL----DQGRWAHVYIERNR 119 (461)
Q Consensus 44 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~----~~a~~~~~~~~~~~ 119 (461)
.+++.+..+|.......+.++...|. .++...+.++.. .+|...-...+.++...|+. +++...+..+...
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~- 101 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE- 101 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc-
Confidence 33444456777777778888877775 444455555544 34666666677777777763 4556666555332
Q ss_pred CCCchHHHHHHHHHHHhcCCH-----HHHHHHHHh-cCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 012539 120 LKMTVTLGTALVDMYSKCGNM-----NKAMDFFWG-MKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTF 193 (461)
Q Consensus 120 ~~~~~~~~~~li~~~~~~g~~-----~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 193 (461)
.++..+-...+.+++..+.- ..+...+.. +..++..+-...+.++.+.++ ++|+..+-.+.+ .+|...-
T Consensus 102 -D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR 176 (280)
T PRK09687 102 -DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVR 176 (280)
T ss_pred -CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHH
Confidence 45666666666666665421 233344433 335566666677777877776 567777777765 3455555
Q ss_pred HHHHHHHhhcC-cHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 012539 194 VSVLRGCCVVG-LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYK 272 (461)
Q Consensus 194 ~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~ 272 (461)
...+.++.+.+ ..+.+...+..+.. .++..+-...+.++++.|+..-.-.+++.+. .++ .....+.++...|
T Consensus 177 ~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 177 NWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKDKRVLSVLIKELK-KGT--VGDLIIEAAGELG 249 (280)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCChhHHHHHHHHHc-CCc--hHHHHHHHHHhcC
Confidence 55555666543 23456666655543 3566777778888888888543334444443 333 2345667777777
Q ss_pred ChHHHHHHHHHHhhccCC
Q 012539 273 NTEMGELASRKLVELETK 290 (461)
Q Consensus 273 ~~~~a~~~~~~~~~~~p~ 290 (461)
+. +|...+..+.+..|+
T Consensus 250 ~~-~a~p~L~~l~~~~~d 266 (280)
T PRK09687 250 DK-TLLPVLDTLLYKFDD 266 (280)
T ss_pred CH-hHHHHHHHHHhhCCC
Confidence 74 677777777776663
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.75 E-value=2.6 Score=38.64 Aligned_cols=107 Identities=14% Similarity=0.065 Sum_probs=76.3
Q ss_pred HHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCh
Q 012539 198 RGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMK-PHAGAWGALLNACRMYKNT 274 (461)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~ 274 (461)
+-|.++|.+++|++.|.... .+.| ++.++..-..+|.+..++..|+.-.... .+. .-...|..-..+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 45888999999999998765 4566 8888888899999999988777655443 111 1122566666666677889
Q ss_pred HHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHH
Q 012539 275 EMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311 (461)
Q Consensus 275 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 311 (461)
.+|.+-++.+++++|.+.. |-..|.+.....++
T Consensus 182 ~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIE----LKKSLARINSLRER 214 (536)
T ss_pred HHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhh
Confidence 9999999999999998643 33344444444443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=83.69 E-value=47 Score=32.67 Aligned_cols=167 Identities=13% Similarity=0.036 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 012539 127 GTALVDMYSKCGNMNKAMDFFWGMKE--RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG 204 (461)
Q Consensus 127 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 204 (461)
.-+++..++..-.++-.+.+-.+|.. .+-..|..++.+|..+ ..++-..+++++.+. .-|...+.--+.-+...+
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~yEki 145 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADKYEKI 145 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHHHHHh
Confidence 33455555555555555555555542 3445555566666555 444555555555553 223333332222233335
Q ss_pred cHHHHHHHHHHhhhhcCCccC------hhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCh
Q 012539 205 LVEEGREHFDSMRREYGIEPW------LEHYGCLVDLYGRAGRLDEALDVINKM----PMKPHAGAWGALLNACRMYKNT 274 (461)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~~~~ 274 (461)
+.+.+..+|..+.. .+-|. .+.|..|+... ..+.+..+.+..++ +...-.+.+.-+-.-|....++
T Consensus 146 k~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 146 KKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred chhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence 55555555555543 22221 12233332211 12333334433333 2222233333344445555566
Q ss_pred HHHHHHHHHHhhccCCCcchHHHHHH
Q 012539 275 EMGELASRKLVELETKNHGAYVLLSN 300 (461)
Q Consensus 275 ~~a~~~~~~~~~~~p~~~~~~~~l~~ 300 (461)
.+|++++..+.+.+..|..+-..++.
T Consensus 222 ~eai~Ilk~il~~d~k~~~ar~~~i~ 247 (711)
T COG1747 222 TEAIRILKHILEHDEKDVWARKEIIE 247 (711)
T ss_pred HHHHHHHHHHhhhcchhhhHHHHHHH
Confidence 66666666555555554444333333
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=83.20 E-value=36 Score=30.98 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=11.1
Q ss_pred HHhhcCChhHHHHHHHH
Q 012539 301 IYAESKNWDRVINVRQI 317 (461)
Q Consensus 301 ~~~~~g~~~~a~~~~~~ 317 (461)
.+.+.++|++|.+.++.
T Consensus 255 ~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHhhcCHHHHHHHHHH
Confidence 34566777777777664
|
It is also involved in sporulation []. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.08 E-value=0.46 Score=38.32 Aligned_cols=53 Identities=17% Similarity=0.159 Sum_probs=28.8
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 012539 96 LSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFW 148 (461)
Q Consensus 96 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 148 (461)
+..+.+.+.......+++.+.+.+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444455555555566666655444555666666666666655555555554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.06 E-value=28 Score=29.54 Aligned_cols=89 Identities=10% Similarity=-0.025 Sum_probs=52.1
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHH--HHHHHHHHHhCCChH
Q 012539 97 SACTHLGALDQGRWAHVYIERNRLKMT--VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYT--WTSVIGGLAMNGAGE 172 (461)
Q Consensus 97 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~ 172 (461)
..+...+++++|...+.+......+.+ ..+--.|.......|.+|+|+..++....++-.+ ...-.+.+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 445666777777777766654321111 1122235556666777777777777766654333 333345567777777
Q ss_pred HHHHHHHHHHHcC
Q 012539 173 KSLELFSLMKQAG 185 (461)
Q Consensus 173 ~A~~~~~~m~~~g 185 (461)
+|..-|.+....+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 7777777776654
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.01 E-value=49 Score=32.41 Aligned_cols=239 Identities=8% Similarity=-0.038 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHhccC------CHHHHHHHHHHHHHcC-C-CCchHHHHHHHHHHHhcCCHHH-
Q 012539 72 EALHLFHLMQIHDVKLNEVSMVSVLSACTHLG------ALDQGRWAHVYIERNR-L-KMTVTLGTALVDMYSKCGNMNK- 142 (461)
Q Consensus 72 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~------~~~~a~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~- 142 (461)
...++|++..+ ..|+...|...|..|...- .+.....+++.....+ . +.....|..+.-++.+...-.+
T Consensus 300 ~~~~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 34456666655 3456667777777664432 2333444444444322 2 2234556666666666554433
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhC-CChH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCc-HHHH-H-HHHHHhh
Q 012539 143 AMDFFWGMKERNVYTWTSVIGGLAMN-GAGE-KSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL-VEEG-R-EHFDSMR 217 (461)
Q Consensus 143 A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~-~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a-~-~~~~~~~ 217 (461)
|..+-.+....+...|-.-++..... .+++ .-.++|......-..+-...+++.. .++ .+.. . .++...
T Consensus 378 a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~- 451 (568)
T KOG2396|consen 378 AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISAL- 451 (568)
T ss_pred HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHH-
Confidence 44444455566777776666655432 1222 1222333333322222333333332 111 1111 1 112222
Q ss_pred hhcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHH--HHhcCChHHHHHHHHHHhhccCCCc
Q 012539 218 REYGIEPW-LEHYGCLVDLYGRAGRLDEALDVINKMP-M-KPHAGAWGALLNA--CRMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 218 ~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
.. -..|+ ...-+.+++.+-+.|-..+|...+..+. . .|+...+..++.. -...-+...+..+|+.+....-.++
T Consensus 452 ~s-~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 452 LS-VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADS 530 (568)
T ss_pred HH-hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCCh
Confidence 11 22333 3445667788888888899998888872 1 3566778777765 2233347777788888775444666
Q ss_pred chHHHHHHHHhhcCChhHHHHHHHHHH
Q 012539 293 GAYVLLSNIYAESKNWDRVINVRQIMK 319 (461)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (461)
..|......-...|..+.+-.++.+..
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHHHHHH
Confidence 777777666667777777666655443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.79 E-value=9.2 Score=32.45 Aligned_cols=57 Identities=9% Similarity=-0.076 Sum_probs=27.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCcC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 012539 62 AGYAQCGKSREALHLFHLMQIHDVKLN-----EVSMVSVLSACTHLGALDQGRWAHVYIERNR 119 (461)
Q Consensus 62 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 119 (461)
+-+..+|++++|..-|.+.+.. +++. ...|..-..+..+++.++.|..-....+..+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~ 164 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN 164 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC
Confidence 3445566666666666666553 1111 1223333344455555555555555554443
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=82.43 E-value=80 Score=34.40 Aligned_cols=254 Identities=7% Similarity=-0.075 Sum_probs=115.3
Q ss_pred HHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc
Q 012539 44 KMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT 123 (461)
Q Consensus 44 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 123 (461)
.+.+.+..+|+..--..+..+.+.+.. +++..+.++.. .+|...-...+.++...+........+..+++. ++
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CC
Confidence 444445566666666666666666543 34444444443 234333334444444332211111222233322 44
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 012539 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203 (461)
Q Consensus 124 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 203 (461)
..+-...++.+...+.-+ ...+...+..+|...-...+.++.+.+..+. +.... -.++...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 455445555555433211 2234445556666665666666665544322 11221 234544445555555555
Q ss_pred CcHHH-HHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 012539 204 GLVEE-GREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASR 282 (461)
Q Consensus 204 g~~~~-a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 282 (461)
+..+. +...+..+.+ .++...-...+.++.+.|..+.+...+..+-..++..+=...+.++...+.. ++...+.
T Consensus 770 ~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-~a~~~L~ 844 (897)
T PRK13800 770 GAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAAD-VAVPALV 844 (897)
T ss_pred ccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcccc-chHHHHH
Confidence 44322 2333333332 3456666667777777776544433333332244544445555555555543 2333333
Q ss_pred HHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHH
Q 012539 283 KLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319 (461)
Q Consensus 283 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (461)
.+.+ + ++...-...+.++.+.+.-..+...+....
T Consensus 845 ~~L~-D-~~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 845 EALT-D-PHLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHhc-C-CCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3321 1 122344444555544322334444444443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.94 E-value=59 Score=32.56 Aligned_cols=179 Identities=11% Similarity=0.042 Sum_probs=102.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 012539 21 PDVVCQTAMISACAKCGDVDLARKMFDEMPERD---PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLS 97 (461)
Q Consensus 21 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 97 (461)
++..+|..-+..-.+.|+++.+.-+|++..-|- ...|--.+.-.-..|+.+-|..++....+--++-.+.+-..-..
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 356788888888888999999998888876551 23444444444455887777777666555433323333222223
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHH---HHHHhcCC--CCHHHHHHHHHH-----HHh
Q 012539 98 ACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM---DFFWGMKE--RNVYTWTSVIGG-----LAM 167 (461)
Q Consensus 98 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~~~~--~~~~~~~~li~~-----~~~ 167 (461)
.+-..|+++.|..+++.+...- +.-+.+-..-+.+-.+.|+.+.+. .++....+ .+....+.+.-- +.-
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 3445678888888888887764 333333334456666777777776 33333221 122222222211 223
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 012539 168 NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201 (461)
Q Consensus 168 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 201 (461)
.++.+.|..++.++.+. ++++...|..++..+.
T Consensus 454 ~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 454 REDADLARIILLEANDI-LPDCKVLYLELIRFEL 486 (577)
T ss_pred hcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHH
Confidence 45666777777776664 4445555555555443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=81.53 E-value=3 Score=23.17 Aligned_cols=24 Identities=4% Similarity=-0.068 Sum_probs=12.8
Q ss_pred HHHhcCChHHHHHHHHHHhhccCC
Q 012539 267 ACRMYKNTEMGELASRKLVELETK 290 (461)
Q Consensus 267 ~~~~~~~~~~a~~~~~~~~~~~p~ 290 (461)
++...|+.++|...++++++..|+
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHccCHHHHHHHHHHHHHHCcC
Confidence 344455555555555555555553
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=81.52 E-value=69 Score=33.06 Aligned_cols=193 Identities=12% Similarity=0.108 Sum_probs=103.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHH-HcCChHHHHHHHHHHHHCCCCcCHH-----HHHH
Q 012539 21 PDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYA-QCGKSREALHLFHLMQIHDVKLNEV-----SMVS 94 (461)
Q Consensus 21 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~-----t~~~ 94 (461)
.+...|..||..-.+| ++.+.+=+.--+..+..++--+...+. ...++++|...+.+....--+++.. .-..
T Consensus 28 ~~l~~Y~kLI~~ai~C--L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~l 105 (608)
T PF10345_consen 28 EQLKQYYKLIATAIKC--LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFL 105 (608)
T ss_pred hhHHHHHHHHHHHHHH--HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 4566787787765443 222222111111124556777777776 5678888888888765432222222 2223
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcC----CCCchHHHHHH-HHHHHhcCCHHHHHHHHHhcCC-------CCHHHHHHHH
Q 012539 95 VLSACTHLGALDQGRWAHVYIERNR----LKMTVTLGTAL-VDMYSKCGNMNKAMDFFWGMKE-------RNVYTWTSVI 162 (461)
Q Consensus 95 ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li 162 (461)
++..+.+.+... |....+..++.- ..+-...+.-+ +..+...++...|.+.++.+.. +-+..+-.++
T Consensus 106 l~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~ 184 (608)
T PF10345_consen 106 LARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLS 184 (608)
T ss_pred HHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 445555555544 777777766432 12223333333 3333334788888888877652 2233344444
Q ss_pred HHH--HhCCChHHHHHHHHHHHHcCC---------CCCHHHHHHHHHHHh--hcCcHHHHHHHHHHh
Q 012539 163 GGL--AMNGAGEKSLELFSLMKQAGV---------RPNEVTFVSVLRGCC--VVGLVEEGREHFDSM 216 (461)
Q Consensus 163 ~~~--~~~g~~~~A~~~~~~m~~~g~---------~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~ 216 (461)
.+. .+.+..+++++.++++..... .|-..+|..++..++ ..|+++.+...++.+
T Consensus 185 ~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 185 EALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 443 345667778777777743221 234556666666554 467766665554443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.50 E-value=36 Score=29.81 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=35.4
Q ss_pred HHHhcCCHHHHHHHHHhC---CCCCCHHHHH---HHHHH--H-HhcCChHHHHHHHHHHhhccCCC
Q 012539 235 LYGRAGRLDEALDVINKM---PMKPHAGAWG---ALLNA--C-RMYKNTEMGELASRKLVELETKN 291 (461)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~---~~~p~~~~~~---~ll~~--~-~~~~~~~~a~~~~~~~~~~~p~~ 291 (461)
.-+..+++.+|.++|++. ....+..-|. -++.+ | .-..+.-.+...+++..+++|.-
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 345678888999998887 2222222232 22332 2 22367777888888999999873
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=81.44 E-value=5.5 Score=36.57 Aligned_cols=86 Identities=17% Similarity=0.162 Sum_probs=59.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhc-
Q 012539 162 IGGLAMNGAGEKSLELFSLMKQAGVRP-NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA- 239 (461)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~- 239 (461)
..-|.++|.+++|++.|..-.. +.| |.+++..-..+|.+...+..|+.=....+. .-...+.+|.+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---------LDKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---------hhHHHHHHHHHHH
Confidence 4569999999999999998776 566 889999889999999988877765554432 112345556555
Q ss_pred ------CCHHHHHHHHHhC-CCCCCH
Q 012539 240 ------GRLDEALDVINKM-PMKPHA 258 (461)
Q Consensus 240 ------g~~~~A~~~~~~~-~~~p~~ 258 (461)
|...+|.+-++.. .++|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 4555555444443 455663
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=81.38 E-value=12 Score=24.16 Aligned_cols=50 Identities=8% Similarity=0.099 Sum_probs=35.4
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCccCCcccEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCc
Q 012539 295 YVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGY 370 (461)
Q Consensus 295 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~ 370 (461)
...++.++.+.|++++|.+..+.+.+. .|...++...-..+.++|.+.|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456778899999999999999988762 34555666666666677777663
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=81.10 E-value=2.3 Score=22.62 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=17.3
Q ss_pred hHHHHHHHHhhcCChhHHHHHHH
Q 012539 294 AYVLLSNIYAESKNWDRVINVRQ 316 (461)
Q Consensus 294 ~~~~l~~~~~~~g~~~~a~~~~~ 316 (461)
+...+..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45667778888888888887765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.69 E-value=20 Score=32.81 Aligned_cols=96 Identities=15% Similarity=0.212 Sum_probs=64.8
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-C--------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 012539 119 RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-R--------NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189 (461)
Q Consensus 119 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 189 (461)
|.+....+...++..-....+++.+...+-.+.. + ...+|--++. .-++++++.++..=.+.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 4444455555566655666777777776655542 2 2334433332 3456788888888888888899
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhh
Q 012539 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (461)
.+++..+++.+.+.++..+|.++.-.|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999988888888888777666554
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.25 E-value=3.8 Score=21.71 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=11.9
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 012539 129 ALVDMYSKCGNMNKAMDFFW 148 (461)
Q Consensus 129 ~li~~~~~~g~~~~A~~~~~ 148 (461)
.+...+...|++++|+.+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 35556666666666666554
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 65.2 bits (157), Expect = 2e-11
Identities = 36/293 (12%), Positives = 84/293 (28%), Gaps = 15/293 (5%)
Query: 40 DLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSAC 99
L K+ + A L + + A L + E + +L
Sbjct: 43 RLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEA 102
Query: 100 THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER------ 153
+LD + + +L A + A +
Sbjct: 103 PGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL 162
Query: 154 -NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREH 212
+ + +V+ G A GA ++ + + ++K AG+ P+ +++ + L+ E
Sbjct: 163 LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIER 222
Query: 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYK 272
+ G++ L+ RA L V + P +
Sbjct: 223 CLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL--------PPPVNT 274
Query: 273 NTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKK 325
+ + ++ ++ K H L ++ + + + V + K
Sbjct: 275 SKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLP 327
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 55.2 bits (131), Expect = 3e-08
Identities = 12/83 (14%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 28 AMISACAKCGDVDLARKMFDEMPER-------DPIAWNAMLAGYAQCGKSREALHLFHLM 80
A C + LA + + +NA++ G+A+ G +E +++ ++
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 81 QIHDVKLNEVSMVSVLSACTHLG 103
+ + + +S + L
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQD 214
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 47.9 bits (112), Expect = 7e-06
Identities = 47/318 (14%), Positives = 92/318 (28%), Gaps = 29/318 (9%)
Query: 21 PDVVCQTAMISACAKCGDVDLARKMFDEMPER----DPIAWNAMLAGYAQCGKSREAL-H 75
+ A++ A+ G + + + D +++ A L + + +
Sbjct: 163 LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIER 222
Query: 76 LFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR-WAHVYIERNRLKMTVTLGTALVDMY 134
M +KL + +LS L + +L V L D+Y
Sbjct: 223 CLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282
Query: 135 SKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA-GVRPNEVTF 193
+K G ++ L M A + +
Sbjct: 283 AKDGRVSYPKLHLPLKTL-----QCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKT 337
Query: 194 VSVLRGCCVVGLVEEGREHFDSMRRE-----YGIEPWLEHYGCLVDLYGRAGRL-DEALD 247
+ LR L RE + + RE + + P+L CL+D + L
Sbjct: 338 LKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFL----CLLD----EREVVRMLLQ 389
Query: 248 VINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKN 307
V+ +P + + A + R + + V+ ++ Y+ L A
Sbjct: 390 VLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQNHYRKYLCL---LASDAE 446
Query: 308 WDRVINVRQIMKAKGVKK 325
RQ +A G +
Sbjct: 447 VPEPCLPRQYWEALGAPE 464
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 461 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.85 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.8 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.75 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.72 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.71 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.7 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.68 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.66 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.64 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.63 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.63 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.62 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.61 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.61 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.61 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.6 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.59 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.59 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.59 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.59 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.59 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.58 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.58 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.58 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.57 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.57 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.56 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.55 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.54 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.54 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.53 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.51 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.5 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.48 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.47 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.46 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.46 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.46 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.46 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.45 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.44 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.44 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.4 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.38 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.37 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.35 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.33 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.31 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.29 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.24 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.24 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.23 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.19 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.19 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.13 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.1 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.1 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.08 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.06 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.06 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.04 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.02 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.01 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.98 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.96 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.96 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.94 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.94 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.93 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.9 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.9 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.9 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.9 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.88 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.88 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.84 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.84 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.83 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.83 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.82 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.8 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.8 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.78 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.76 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.76 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.76 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.75 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.75 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.73 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.71 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.69 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.68 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.63 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.63 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.62 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.61 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.6 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.59 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.59 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.57 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.54 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.54 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.53 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.52 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.51 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.51 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.51 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.5 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.49 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.48 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.47 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.47 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.46 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.46 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.46 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.46 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.45 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.42 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.42 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.42 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.4 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.38 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.37 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.35 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.32 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.32 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.31 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.31 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.29 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.29 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.29 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.28 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.28 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.27 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.26 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.24 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.23 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.23 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.19 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.19 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.17 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.17 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.17 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.15 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.13 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.11 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.11 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.11 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.1 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.07 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.04 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.03 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.03 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.0 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.94 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.94 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.94 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.93 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.92 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.92 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.85 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.84 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.83 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.78 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.73 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.71 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.68 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.67 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.63 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.5 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.45 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.44 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.39 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.39 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.36 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.33 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.29 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.29 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.26 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.99 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.99 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.96 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.92 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.88 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.83 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.81 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.8 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.63 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.62 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.55 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.54 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.45 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.86 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.85 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.54 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.28 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.96 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.43 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.41 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.06 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.68 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.52 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 92.96 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.86 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.83 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.72 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.63 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 91.41 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.54 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.28 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 89.93 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 89.65 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.4 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 89.36 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 89.28 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.08 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.03 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 88.91 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 88.69 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 88.5 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.15 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.08 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.05 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 87.91 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.83 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 86.57 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.24 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.19 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 86.13 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 85.59 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 85.09 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.27 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 83.83 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 81.99 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 81.13 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 81.13 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.5 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-30 Score=260.56 Aligned_cols=318 Identities=12% Similarity=0.025 Sum_probs=258.9
Q ss_pred ccccCCchHHHHHHhcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCC-CC------------------ChhHHHHH
Q 012539 2 YAELGCLGYCQKVFDGI--HEPDVVCQTAMISACAKCGDVDLARKMFDEMP-ER------------------DPIAWNAM 60 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~------------------~~~~~~~l 60 (461)
|.+.|++++|..+|+.+ ..+++.+++.++.+|.+.|++++|.++|+++. .. ++.+|+.+
T Consensus 127 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 206 (597)
T 2xpi_A 127 YCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLR 206 (597)
T ss_dssp HHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHH
Confidence 55677788888888777 35677788888888888888888888887433 22 36778888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCC-------------------------------------------------------
Q 012539 61 LAGYAQCGKSREALHLFHLMQIHDV------------------------------------------------------- 85 (461)
Q Consensus 61 i~~~~~~g~~~~A~~~~~~m~~~~~------------------------------------------------------- 85 (461)
+.+|.+.|++++|+++|++|.+.+.
T Consensus 207 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 286 (597)
T 2xpi_A 207 GQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED 286 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcc
Confidence 8888888888888888877754321
Q ss_pred ---------------CcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC------------------------------
Q 012539 86 ---------------KLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL------------------------------ 120 (461)
Q Consensus 86 ---------------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------------------------ 120 (461)
+++..++..++.++.+.|++++|..+++++.+.+.
T Consensus 287 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 366 (597)
T 2xpi_A 287 ELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV 366 (597)
T ss_dssp HHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 15666777777777777888888777777765432
Q ss_pred ---CCchHHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 012539 121 ---KMTVTLGTALVDMYSKCGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFV 194 (461)
Q Consensus 121 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 194 (461)
+.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++.
T Consensus 367 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 445 (597)
T 2xpi_A 367 DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYL 445 (597)
T ss_dssp HHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHH
T ss_pred hhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHH
Confidence 3456788888899999999999999999875 3467899999999999999999999999998753 44788899
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHH
Q 012539 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-------PMKPH--AGAWGALL 265 (461)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll 265 (461)
.++.+|.+.|++++|.++|+.+.+. .+.++.+|..++..|.+.|++++|.++|+++ +..|+ ..+|..+.
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 523 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLG 523 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 9999999999999999999998753 2346788999999999999999999999887 44677 67999999
Q ss_pred HHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 266 NACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 266 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
.+|...|++++|...++++.+.+|+++.+|..++.+|.+.|++++|.+.++++.+..
T Consensus 524 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 524 HAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999987743
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.5e-31 Score=269.71 Aligned_cols=360 Identities=11% Similarity=-0.045 Sum_probs=299.4
Q ss_pred ccccCCchHHHHHHhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHHcCChHHHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIH--EPDVVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLF 77 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~ 77 (461)
|.+.|++++|..+|+++. .||..++..++.+|.+.|++++|..+|+++. .+++.+|+.++.+|.+.|++++|+++|
T Consensus 94 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 173 (597)
T 2xpi_A 94 ALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLL 173 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 567899999999999875 4888999999999999999999999999984 568999999999999999999999999
Q ss_pred HHHHHC---------------CCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHH--------------
Q 012539 78 HLMQIH---------------DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGT-------------- 128 (461)
Q Consensus 78 ~~m~~~---------------~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------- 128 (461)
+++... +.+++..+|+.++.+|.+.|++++|.+.|+++.+.+. .+...+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~ 252 (597)
T 2xpi_A 174 GETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEW 252 (597)
T ss_dssp CSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHH
T ss_pred hccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHH
Confidence 854322 2244688999999999999999999999999998752 2333333
Q ss_pred ------------------------HHHHHHHhcCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012539 129 ------------------------ALVDMYSKCGNMNKAMDFFWGMKE--RNVYTWTSVIGGLAMNGAGEKSLELFSLMK 182 (461)
Q Consensus 129 ------------------------~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 182 (461)
.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|+++.
T Consensus 253 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 332 (597)
T 2xpi_A 253 DLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL 332 (597)
T ss_dssp HHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 235667788999999999999987 799999999999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHH
Q 012539 183 QAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGA 260 (461)
Q Consensus 183 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 260 (461)
+.+ +.+..++..++.++...|+.++|..+++.+.+. .+.+..++..++.+|.+.|++++|.++|+++ ...| +..+
T Consensus 333 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 409 (597)
T 2xpi_A 333 EID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPA 409 (597)
T ss_dssp HHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH
Confidence 864 336778899999999999999999999999753 3456889999999999999999999999988 3334 5779
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCccCCcccEEEeCCEEEE
Q 012539 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHE 340 (461)
Q Consensus 261 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~ 340 (461)
|+.++.++.+.|++++|..+|+++.+..|++..+|..++.+|.+.|++++|.++++++.+.... ....|..+
T Consensus 410 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l------ 481 (597)
T 2xpi_A 410 WIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY--DPLLLNEL------ 481 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC--CHHHHHHH------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHH------
Confidence 9999999999999999999999999999999999999999999999999999999999875432 11122111
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHHcCcccCC
Q 012539 341 FFAGDETHPRYNEIEVMLGEISRRLKLAGYVANT 374 (461)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~ 374 (461)
...+...++.+++...+.++.....+.+..|+.
T Consensus 482 -~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~ 514 (597)
T 2xpi_A 482 -GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514 (597)
T ss_dssp -HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred -HHHHHHhCCHHHHHHHHHHHHHhhhccccchhh
Confidence 112234567777777777666665555777774
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-30 Score=252.89 Aligned_cols=183 Identities=15% Similarity=0.163 Sum_probs=145.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCC---------HHHHHHHHHHHHHcCCCCchH
Q 012539 55 IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGA---------LDQGRWAHVYIERNRLKMTVT 125 (461)
Q Consensus 55 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 125 (461)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35777788888888888888888888888888888888888888776543 577788888888888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 012539 126 LGTALVDMYSKCGNMNKAMDFFWGMK----ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC 201 (461)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 201 (461)
+||+||.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 88888888888888888888888776 36788888888888888888888888888888888888888888888888
Q ss_pred hcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHh
Q 012539 202 VVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238 (461)
Q Consensus 202 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 238 (461)
+.|++++|.+++++|.+. +..|+..||+.++..|..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 888888888888888654 888888888888877765
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=240.98 Aligned_cols=200 Identities=14% Similarity=0.156 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHHCCCCcCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC---------H
Q 012539 71 REALHLFHLMQIHDVKLNEV-SMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN---------M 140 (461)
Q Consensus 71 ~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~ 140 (461)
..+..+.+++.+.++.+.+. .++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 34556667787777666544 6888999999999999999999999999999999999999999998765 7
Q ss_pred HHHHHHHHhcC----CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHh
Q 012539 141 NKAMDFFWGMK----ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSM 216 (461)
Q Consensus 141 ~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (461)
++|.++|++|. .||..+|++||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999997 48999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 012539 217 RREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM---PMKPHAGAWGALLNACRMY 271 (461)
Q Consensus 217 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~ 271 (461)
.+. |+.||..+|++||++|++.|++++|.+++++| +..|+..||+.++..+...
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 875 99999999999999999999999999999999 7889999999999998764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-24 Score=207.49 Aligned_cols=313 Identities=14% Similarity=0.110 Sum_probs=237.9
Q ss_pred ccccCCchHHHHHHhcCC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIH--EP-DVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALH 75 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 75 (461)
+.+.|++++|.+.++.+. .| +...+..+...+.+.|++++|...++...+ .+..+|+.+...|.+.|++++|++
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 346788888888887764 23 456677777788888888888888876542 356788888888888888888888
Q ss_pred HHHHHHHCCCCc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 012539 76 LFHLMQIHDVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-- 152 (461)
Q Consensus 76 ~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 152 (461)
.|+++.+. .| +..+|..+..++...|++++|...+..+.+.. |.+..++..+...|...|++++|.+.|+++..
T Consensus 89 ~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 165 (388)
T 1w3b_A 89 HYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 88888774 34 45578888888888888888888888888765 44556677788888888888888888887763
Q ss_pred -CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHH
Q 012539 153 -RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYG 230 (461)
Q Consensus 153 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 230 (461)
.+..+|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...+.+..+. .| +..++.
T Consensus 166 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~ 241 (388)
T 1w3b_A 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL---SPNHAVVHG 241 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH---CTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcCCHHHHH
Confidence 356788888888888888888888888887742 223566777777777888888888888777642 44 366777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCCh
Q 012539 231 CLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNW 308 (461)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 308 (461)
.+...|.+.|++++|...|+++ ...| +..+|..+...+...|++++|...++++.+..|++..++..++.++...|++
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCH
Confidence 7888888888888888888776 3344 3557777777788888888888888888888888777888888888888888
Q ss_pred hHHHHHHHHHHhC
Q 012539 309 DRVINVRQIMKAK 321 (461)
Q Consensus 309 ~~a~~~~~~m~~~ 321 (461)
++|.+.++++.+.
T Consensus 322 ~~A~~~~~~al~~ 334 (388)
T 1w3b_A 322 EEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhc
Confidence 8888888877653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-24 Score=203.53 Aligned_cols=312 Identities=12% Similarity=0.054 Sum_probs=276.7
Q ss_pred ccccCCchHHHHHHhcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIH---EPDVVCQTAMISACAKCGDVDLARKMFDEMPE--R-DPIAWNAMLAGYAQCGKSREALH 75 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~ 75 (461)
|.+.|++++|...++... ..+..+|..+...|.+.|++++|...|+++.+ | ++.+|..+..++.+.|++++|++
T Consensus 43 ~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 122 (388)
T 1w3b_A 43 HFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 456799999999998764 35788999999999999999999999998753 3 56789999999999999999999
Q ss_pred HHHHHHHCCCCc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 012539 76 LFHLMQIHDVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-- 152 (461)
Q Consensus 76 ~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 152 (461)
.|+++.+.. | +...+..+...+...|++++|...+.++.+.. +.+..+++.+...|.+.|++++|...|+++..
T Consensus 123 ~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 199 (388)
T 1w3b_A 123 AYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199 (388)
T ss_dssp HHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999853 4 45567778888999999999999999999875 55678899999999999999999999998873
Q ss_pred -CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHH
Q 012539 153 -RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP-NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHY 229 (461)
Q Consensus 153 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~ 229 (461)
.+...|..+...+...|++++|+..|++.... .| +..++..+..++...|++++|...|+.+.+. .| ++.++
T Consensus 200 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~ 274 (388)
T 1w3b_A 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAY 274 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHH
Confidence 46788999999999999999999999999885 44 4788899999999999999999999999753 44 57889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCC
Q 012539 230 GCLVDLYGRAGRLDEALDVINKM-PM-KPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKN 307 (461)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 307 (461)
..+...|.+.|++++|...++++ .. .++..+|..+...+...|++++|...++++.+..|++..++..++.+|.+.|+
T Consensus 275 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 354 (388)
T 1w3b_A 275 CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354 (388)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 99999999999999999999988 22 34677999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhC
Q 012539 308 WDRVINVRQIMKAK 321 (461)
Q Consensus 308 ~~~a~~~~~~m~~~ 321 (461)
+++|.+.++++.+.
T Consensus 355 ~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 355 LQEALMHYKEAIRI 368 (388)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998763
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-22 Score=197.42 Aligned_cols=290 Identities=13% Similarity=0.038 Sum_probs=213.5
Q ss_pred ccccCCchHHHHHHhcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIH---EPDVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALH 75 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 75 (461)
|.+.|++++|+.+|+.+. ..+..+|..+..+|.+.|++++|...|+++.+ .+..+|..+...|.+.|++++|+.
T Consensus 36 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 115 (450)
T 2y4t_A 36 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAED 115 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 456788888888887764 24677788888888888888888888887653 356678888888888888888888
Q ss_pred HHHHHHHCCCCcCH----HHHHHH------------HHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 012539 76 LFHLMQIHDVKLNE----VSMVSV------------LSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139 (461)
Q Consensus 76 ~~~~m~~~~~~p~~----~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 139 (461)
.|+++.+. .|+. .++..+ ...+...|++++|...+..+.+.. +.+..++..++.+|.+.|+
T Consensus 116 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 192 (450)
T 2y4t_A 116 DFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGE 192 (450)
T ss_dssp HHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCC
Confidence 88888764 3433 344433 334777788888888888887764 4567777778888888888
Q ss_pred HHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHH------------HHHHhhc
Q 012539 140 MNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSV------------LRGCCVV 203 (461)
Q Consensus 140 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l------------l~~~~~~ 203 (461)
+++|.+.|+++.+ .+..+|..++..|...|++++|+..|+++... .|+ ...+..+ ...+...
T Consensus 193 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (450)
T 2y4t_A 193 PRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRD 270 (450)
T ss_dssp GGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8888888887753 46778888888888888888888888888764 344 3333333 6677778
Q ss_pred CcHHHHHHHHHHhhhhcCCccC-----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 012539 204 GLVEEGREHFDSMRREYGIEPW-----LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEM 276 (461)
Q Consensus 204 g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 276 (461)
|++++|..+|+.+.+. .|+ ..++..+..++.+.|++++|...++++ ...| +..+|..+..+|...|++++
T Consensus 271 g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 347 (450)
T 2y4t_A 271 GRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDE 347 (450)
T ss_dssp TCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH
Confidence 8888888888887653 343 346777788888888888888888776 3334 56678888888888888888
Q ss_pred HHHHHHHHhhccCCCcchHHHHH
Q 012539 277 GELASRKLVELETKNHGAYVLLS 299 (461)
Q Consensus 277 a~~~~~~~~~~~p~~~~~~~~l~ 299 (461)
|...++++.++.|.++.++..+.
T Consensus 348 A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 348 AIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHhCcchHHHHHHHH
Confidence 88888888888888877777777
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-22 Score=194.25 Aligned_cols=306 Identities=12% Similarity=0.055 Sum_probs=255.7
Q ss_pred HHHHHHhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012539 10 YCQKVFDGIHE---PDVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHLFHLMQIH 83 (461)
Q Consensus 10 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 83 (461)
.+...+..... .++.+|..++..|.+.|++++|+.+|+++.+ .+..+|..+..+|...|++++|+..|+++.+.
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 34445555442 3567899999999999999999999998753 46889999999999999999999999999986
Q ss_pred CCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCch---HHHHHH------------HHHHHhcCCHHHHHHHHH
Q 012539 84 DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTV---TLGTAL------------VDMYSKCGNMNKAMDFFW 148 (461)
Q Consensus 84 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~ 148 (461)
+ +.+..++..+..++...|++++|...+..+.+.. +.+. ..+..+ ...|.+.|++++|...|+
T Consensus 90 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 90 K-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4 3467889999999999999999999999999865 3344 555555 445899999999999999
Q ss_pred hcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC
Q 012539 149 GMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW 225 (461)
Q Consensus 149 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 225 (461)
.+.+ .+..++..++.+|.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...|+.+.+. .|+
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~ 243 (450)
T 2y4t_A 168 KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQD 243 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT
T ss_pred HHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC
Confidence 8763 478899999999999999999999999998752 446889999999999999999999999999753 444
Q ss_pred -hhHHHHH------------HHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 012539 226 -LEHYGCL------------VDLYGRAGRLDEALDVINKM-PMKPH-----AGAWGALLNACRMYKNTEMGELASRKLVE 286 (461)
Q Consensus 226 -~~~~~~l------------i~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 286 (461)
...+..+ ...+.+.|++++|...|+++ ...|+ ...|..+...+...|++++|...++++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4445444 78899999999999999988 33454 34788888899999999999999999999
Q ss_pred ccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 287 LETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 287 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
..|+++.+|..++.+|...|++++|.+.++++.+.
T Consensus 324 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 324 MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999774
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-21 Score=191.44 Aligned_cols=316 Identities=10% Similarity=-0.021 Sum_probs=199.0
Q ss_pred ccccCCchHHHHHHhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIH--EPDVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHL 76 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~ 76 (461)
|.+.|++++|+..|+++. .||+.+|..+..+|.+.|++++|...|+++.+ .++.+|..+..+|...|++++|+..
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 95 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFD 95 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 467899999999998875 48899999999999999999999999997653 3567899999999999999999999
Q ss_pred HHHHHHCCCC----------------------------------------------------------------------
Q 012539 77 FHLMQIHDVK---------------------------------------------------------------------- 86 (461)
Q Consensus 77 ~~~m~~~~~~---------------------------------------------------------------------- 86 (461)
|+++...+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (514)
T 2gw1_A 96 LSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPEL 175 (514)
T ss_dssp HHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCC
T ss_pred HHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHH
Confidence 9888765420
Q ss_pred -------cC-HHHHHHHHHHHh---ccCCHHHHHHHHHHHHH-----cCC--------CCchHHHHHHHHHHHhcCCHHH
Q 012539 87 -------LN-EVSMVSVLSACT---HLGALDQGRWAHVYIER-----NRL--------KMTVTLGTALVDMYSKCGNMNK 142 (461)
Q Consensus 87 -------p~-~~t~~~ll~~~~---~~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~li~~~~~~g~~~~ 142 (461)
|+ ...+......+. +.|++++|...+.++.+ ... +.+..++..+...|...|++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (514)
T 2gw1_A 176 TFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLG 255 (514)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHH
Confidence 00 112222222222 25667777776666665 210 1234455556666666666666
Q ss_pred HHHHHHhcCC--C----------------------------------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 012539 143 AMDFFWGMKE--R----------------------------------NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV 186 (461)
Q Consensus 143 A~~~~~~~~~--~----------------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 186 (461)
|...|+.+.+ | +..+|..+...|...|++++|+..|+++.+..
T Consensus 256 A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 334 (514)
T 2gw1_A 256 AHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD- 334 (514)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-
Confidence 6666655431 2 33445555555555666666666666555532
Q ss_pred CCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----H
Q 012539 187 RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM----PMKPH----A 258 (461)
Q Consensus 187 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~ 258 (461)
+.+..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|...++++ +..++ .
T Consensus 335 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 412 (514)
T 2gw1_A 335 PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGI 412 (514)
T ss_dssp SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCS
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHH
Confidence 223445555555666666666666666665542 1223455666666666666666666666555 11122 2
Q ss_pred HHHHHHHHHHHh---cCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 259 GAWGALLNACRM---YKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 259 ~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
..|..+...+.. .|++++|...++++.+..|.+..++..++.+|...|++++|.+.+++..+
T Consensus 413 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 413 APLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 256666666666 66666666666666666666666666666666666666666666666655
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-19 Score=170.42 Aligned_cols=295 Identities=12% Similarity=0.050 Sum_probs=245.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 012539 22 DVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA 98 (461)
Q Consensus 22 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 98 (461)
|+..+..+...+.+.|++++|...|+++.+ .++.+|..+...+...|++++|+..|+++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 567788889999999999999999998653 367789999999999999999999999998853 2366788889999
Q ss_pred HhccCCHHHHHHHHHHHHHcCCC--CchHHHHHH------------HHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHH
Q 012539 99 CTHLGALDQGRWAHVYIERNRLK--MTVTLGTAL------------VDMYSKCGNMNKAMDFFWGMK---ERNVYTWTSV 161 (461)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l 161 (461)
+...|++++|...+..+.+.... .+...+..+ ...+...|++++|.+.|+.+. ..+...|..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 99999999999999999886520 345555545 588899999999999999876 3477889999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-hhHHH----------
Q 012539 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHYG---------- 230 (461)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~---------- 230 (461)
...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++...+. .|+ ...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHH
Confidence 999999999999999999998752 446788888999999999999999999998753 333 33332
Q ss_pred --HHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-----HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 012539 231 --CLVDLYGRAGRLDEALDVINKM-PMKPHAG-----AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIY 302 (461)
Q Consensus 231 --~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 302 (461)
.+...+.+.|++++|...++++ ...|+.. .+..+...+...|++++|...++++.+..|+++.++..++.+|
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 2366789999999999999887 3334432 3445667799999999999999999999999999999999999
Q ss_pred hhcCChhHHHHHHHHHHhC
Q 012539 303 AESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 303 ~~~g~~~~a~~~~~~m~~~ 321 (461)
...|++++|.+.+++..+.
T Consensus 317 ~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhc
Confidence 9999999999999998764
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-19 Score=168.01 Aligned_cols=295 Identities=12% Similarity=0.015 Sum_probs=247.6
Q ss_pred ccccCCchHHHHHHhcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIH---EPDVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALH 75 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 75 (461)
|.+.|++++|...|+++. ..++.+|..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+.
T Consensus 13 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 92 (359)
T 3ieg_A 13 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAED 92 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHH
Confidence 457899999999999875 34688999999999999999999999998753 367899999999999999999999
Q ss_pred HHHHHHHCCCCc----CHHHHHHH------------HHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 012539 76 LFHLMQIHDVKL----NEVSMVSV------------LSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN 139 (461)
Q Consensus 76 ~~~~m~~~~~~p----~~~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 139 (461)
.|+++.+. .| +...+..+ ...+...|++++|...+..+.+.. +.+..++..+...|...|+
T Consensus 93 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 169 (359)
T 3ieg_A 93 DFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGE 169 (359)
T ss_dssp HHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCC
Confidence 99999885 34 33444444 577889999999999999999875 5678889999999999999
Q ss_pred HHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHH------------HHHHHHhhc
Q 012539 140 MNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFV------------SVLRGCCVV 203 (461)
Q Consensus 140 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~------------~ll~~~~~~ 203 (461)
+++|...|+.... .+..+|..+...|...|++++|...|++..+. .|+ ...+. .+...+...
T Consensus 170 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 247 (359)
T 3ieg_A 170 PRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRD 247 (359)
T ss_dssp HHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999998764 47789999999999999999999999999875 343 33332 235668889
Q ss_pred CcHHHHHHHHHHhhhhcCCccC-h----hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 012539 204 GLVEEGREHFDSMRREYGIEPW-L----EHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEM 276 (461)
Q Consensus 204 g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 276 (461)
|++++|...++.+.+. .|+ . ..+..+...|...|++++|...+++. ...| +..+|..+...+...|++++
T Consensus 248 ~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 324 (359)
T 3ieg_A 248 GRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDE 324 (359)
T ss_dssp TCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999998764 343 2 33556788999999999999999988 3345 66789999999999999999
Q ss_pred HHHHHHHHhhccCCCcchHHHHHHHHhh
Q 012539 277 GELASRKLVELETKNHGAYVLLSNIYAE 304 (461)
Q Consensus 277 a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 304 (461)
|...++++.+..|++...+..+..++..
T Consensus 325 A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 325 AIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 9999999999999998888877766543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-19 Score=178.35 Aligned_cols=316 Identities=10% Similarity=0.028 Sum_probs=248.1
Q ss_pred ccccCCchHHHHHHhcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIH---EPDVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALH 75 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 75 (461)
|.+.|++++|++.|+++. ..++.+|..+..+|.+.|++++|+..|+++.+ .++.+|..+...+...|++++|+.
T Consensus 35 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 114 (537)
T 3fp2_A 35 FFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMF 114 (537)
T ss_dssp HHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 457899999999998875 24788899999999999999999999998653 367788889999999999888888
Q ss_pred HHHHHHHC------------------------------------------------------------------------
Q 012539 76 LFHLMQIH------------------------------------------------------------------------ 83 (461)
Q Consensus 76 ~~~~m~~~------------------------------------------------------------------------ 83 (461)
.|+.+...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (537)
T 3fp2_A 115 DLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYA 194 (537)
T ss_dssp HHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHH
T ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHH
Confidence 77432100
Q ss_pred -----------------------------------CCCcC--------HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 012539 84 -----------------------------------DVKLN--------EVSMVSVLSACTHLGALDQGRWAHVYIERNRL 120 (461)
Q Consensus 84 -----------------------------------~~~p~--------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 120 (461)
...|+ ..++..+...+...|++++|...+..+.+..
T Consensus 195 ~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~- 273 (537)
T 3fp2_A 195 LLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH- 273 (537)
T ss_dssp HHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-
Confidence 01122 1234455566677788888998888888864
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012539 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197 (461)
Q Consensus 121 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 197 (461)
|+..++..+...|...|++++|...|+.+.+ .+..+|..+...|...|++++|++.|+++.+.. +.+...+..+.
T Consensus 274 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 351 (537)
T 3fp2_A 274 -PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLA 351 (537)
T ss_dssp -CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHH
T ss_pred -CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3477788888888999999999999987763 467889999999999999999999999998753 33467788888
Q ss_pred HHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC----CHHHHHHHHHHHH
Q 012539 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM----PMKP----HAGAWGALLNACR 269 (461)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p----~~~~~~~ll~~~~ 269 (461)
..+...|++++|..+++.+.+. .+.+...+..+...|...|++++|...++++ +..+ ....+..+...+.
T Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~ 429 (537)
T 3fp2_A 352 CLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILA 429 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHH
Confidence 8999999999999999988764 2335678888999999999999999999886 1111 2223444455677
Q ss_pred hc----------CChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 270 MY----------KNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 270 ~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
.. |++++|...++++.+..|++..++..++.+|...|++++|.+.+++..+..
T Consensus 430 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 430 RQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 77 999999999999999999999999999999999999999999999987754
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.9e-19 Score=163.52 Aligned_cols=286 Identities=12% Similarity=0.050 Sum_probs=237.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 012539 20 EPDVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVL 96 (461)
Q Consensus 20 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 96 (461)
..++..+..++..+...|++++|..+|+++.+ .+...+..++..+...|++++|+.+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 35666778888899999999999999998753 355677888899999999999999999998854 33677888888
Q ss_pred HHHhccC-CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChH
Q 012539 97 SACTHLG-ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGE 172 (461)
Q Consensus 97 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 172 (461)
..+...| ++++|...+..+.+.. +.+...+..+...|...|++++|...|++..+ .+...|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 9999999 9999999999998875 55677888899999999999999999998763 35677888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcC-------CccChhHHHHHHHHHHhcCCHHHH
Q 012539 173 KSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYG-------IEPWLEHYGCLVDLYGRAGRLDEA 245 (461)
Q Consensus 173 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A 245 (461)
+|++.|++..+.. +.+...+..+...+...|++++|...++.+.+... .+.....+..+...|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999998752 34577888889999999999999999998876321 133467888999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHH-hhcCCh
Q 012539 246 LDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIY-AESKNW 308 (461)
Q Consensus 246 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 308 (461)
...+++. ...| +...|..+...+...|++++|...++++.+..|+++.++..+..++ ...|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 9999887 2233 5668888888999999999999999999999999998999998888 455554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-19 Score=175.44 Aligned_cols=294 Identities=10% Similarity=-0.034 Sum_probs=250.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHh
Q 012539 23 VVCQTAMISACAKCGDVDLARKMFDEMP--ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACT 100 (461)
Q Consensus 23 ~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 100 (461)
...+..+...+.+.|++++|+..|+++. .|++.+|..+..+|.+.|++++|+..|+++.+.+ +.+..++..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 4567788899999999999999999876 4788999999999999999999999999999864 346678999999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCC----------------------------------------------------------
Q 012539 101 HLGALDQGRWAHVYIERNRLKM---------------------------------------------------------- 122 (461)
Q Consensus 101 ~~~~~~~a~~~~~~~~~~~~~~---------------------------------------------------------- 122 (461)
..|++++|...+..+.+.+...
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999999998765311
Q ss_pred --------------------chHHHHHHHHHHHh---cCCHHHHHHHHHhcCC----------------C-CHHHHHHHH
Q 012539 123 --------------------TVTLGTALVDMYSK---CGNMNKAMDFFWGMKE----------------R-NVYTWTSVI 162 (461)
Q Consensus 123 --------------------~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~li 162 (461)
+...+..+...+.. .|++++|...|+++.. | +..+|..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 12333333444443 8999999999988755 2 356888999
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCH
Q 012539 163 GGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242 (461)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 242 (461)
..+...|++++|+..|+++.+.. |+...+..+...+...|++++|...++.+.+. .+.+...+..+...|...|++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHHhCCH
Confidence 99999999999999999998864 44778888999999999999999999998752 233678899999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 243 DEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 243 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
++|...++++ ...| +...+..+...+...|++++|...++++.+..|.++.++..++.+|...|++++|.+.++++.+
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999987 3334 5668888989999999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 012539 321 K 321 (461)
Q Consensus 321 ~ 321 (461)
.
T Consensus 401 ~ 401 (514)
T 2gw1_A 401 L 401 (514)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.2e-19 Score=167.71 Aligned_cols=281 Identities=12% Similarity=-0.031 Sum_probs=226.1
Q ss_pred HHHHcCCHHHHHH-HHhhCCC---C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccC
Q 012539 32 ACAKCGDVDLARK-MFDEMPE---R----DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLG 103 (461)
Q Consensus 32 ~~~~~g~~~~A~~-~~~~m~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 103 (461)
.+.-.|++++|.. .|++... . +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3445688999998 8886542 1 35678899999999999999999999999864 347778999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHH---------------HHHHH
Q 012539 104 ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--R-NVYTWTS---------------VIGGL 165 (461)
Q Consensus 104 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~ 165 (461)
++++|...+..+.+.. +.+..++..+...|...|++++|...|+++.. | +...+.. .+..+
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 9999999999999886 56788899999999999999999999998763 2 2222221 13334
Q ss_pred HhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHH
Q 012539 166 AMNGAGEKSLELFSLMKQAGVRP-NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244 (461)
Q Consensus 166 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 244 (461)
...|++++|+..|+++.+..... +..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 48899999999999998853221 4788899999999999999999999998753 23357889999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC-----------cchHHHHHHHHhhcCChhHH
Q 012539 245 ALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKN-----------HGAYVLLSNIYAESKNWDRV 311 (461)
Q Consensus 245 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a 311 (461)
|...++++ ...| +..++..+...+...|++++|...++++.+..|.+ ..+|..+..+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999987 3344 56689999999999999999999999999988877 77899999999999999999
Q ss_pred HHHHH
Q 012539 312 INVRQ 316 (461)
Q Consensus 312 ~~~~~ 316 (461)
..+++
T Consensus 350 ~~~~~ 354 (368)
T 1fch_A 350 GAADA 354 (368)
T ss_dssp HHHHT
T ss_pred HHhHH
Confidence 98876
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-18 Score=159.68 Aligned_cols=264 Identities=9% Similarity=-0.005 Sum_probs=228.9
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 012539 52 RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131 (461)
Q Consensus 52 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 131 (461)
.++..+..++..+...|++++|+++|+++.+.. +.+...+..++..+...|++++|...+.++.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 467788889999999999999999999998864 3355566677888899999999999999999875 55678888899
Q ss_pred HHHHhcC-CHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHH
Q 012539 132 DMYSKCG-NMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE 207 (461)
Q Consensus 132 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 207 (461)
..|...| ++++|...|++... .+...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998764 357889999999999999999999999998863 334667777889999999999
Q ss_pred HHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC----CC-------CCCHHHHHHHHHHHHhcCChHH
Q 012539 208 EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM----PM-------KPHAGAWGALLNACRMYKNTEM 276 (461)
Q Consensus 208 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~-------~p~~~~~~~ll~~~~~~~~~~~ 276 (461)
+|...++.+.+. .+.+...+..+...|...|++++|...++++ +. ..+..+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999998752 2345788999999999999999999999877 10 2335688999999999999999
Q ss_pred HHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 277 GELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 277 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
|...++++.+..|.+..++..+..+|...|++++|.+.+++..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999987654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-18 Score=163.49 Aligned_cols=261 Identities=9% Similarity=-0.062 Sum_probs=216.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 012539 53 DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132 (461)
Q Consensus 53 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 132 (461)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...+.++++.. +.+..++..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45679999999999999999999999999864 3477899999999999999999999999999875 556888999999
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC-------------HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 012539 133 MYSKCGNMNKAMDFFWGMKERN-------------VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR-PNEVTFVSVLR 198 (461)
Q Consensus 133 ~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~ 198 (461)
.|.+.|++++|...|+++.+.+ ...+..+...+...|++++|++.|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999887422 223445588899999999999999999886322 15788999999
Q ss_pred HHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 012539 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEM 276 (461)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 276 (461)
.+...|++++|...|+.+.+. .+.+..++..+..+|.+.|++++|...|+++ ...| +..+|..+...+...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999998763 2345789999999999999999999999987 3345 46789999999999999999
Q ss_pred HHHHHHHHhhccCC------------CcchHHHHHHHHhhcCChhHHHHHHHH
Q 012539 277 GELASRKLVELETK------------NHGAYVLLSNIYAESKNWDRVINVRQI 317 (461)
Q Consensus 277 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 317 (461)
|...++++.++.|. +...|..|..++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998876 356899999999999999988877653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-20 Score=175.10 Aligned_cols=283 Identities=12% Similarity=0.094 Sum_probs=137.0
Q ss_pred cccCCchHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012539 3 AELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI 82 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 82 (461)
-+.|++++|.+++++...| .+|+.|+.++.+.|++++|++.|.+. +|...|..++.++.+.|++++|+..++..++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3678899999999999555 59999999999999999999999764 5777999999999999999999997776666
Q ss_pred CCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHH
Q 012539 83 HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVI 162 (461)
Q Consensus 83 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 162 (461)
. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+++.|...|++++|...|..+ ..|..|+
T Consensus 90 ~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA 155 (449)
T 1b89_A 90 K--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 155 (449)
T ss_dssp ---------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHH
T ss_pred h--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHH
Confidence 3 4567889999999999999999988774 467779999999999999999999999988 4899999
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCH
Q 012539 163 GGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242 (461)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 242 (461)
.++.+.|++++|++.++++ .+..+|..++.+|...|+++.|......+ ...+.....++..|.+.|++
T Consensus 156 ~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHHHHHHHHCCCH
Confidence 9999999999999999988 27899999999999999999996654432 23444556799999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CChHHHHHHHHHHhhccC-----CCcchHHHHHHHHhhcCChhHHHH
Q 012539 243 DEALDVINKM-PMKP-HAGAWGALLNACRMY--KNTEMGELASRKLVELET-----KNHGAYVLLSNIYAESKNWDRVIN 313 (461)
Q Consensus 243 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 313 (461)
++|..+++.. +..+ ....|+-|.-++++. ++..+..+.|..-..+.| .+...|..+...|.+.++++.|..
T Consensus 224 eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 224 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 9999999887 5444 455777776666655 344555555554444445 567899999999999999999887
Q ss_pred HH
Q 012539 314 VR 315 (461)
Q Consensus 314 ~~ 315 (461)
+.
T Consensus 304 tm 305 (449)
T 1b89_A 304 TM 305 (449)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-17 Score=165.71 Aligned_cols=295 Identities=12% Similarity=0.046 Sum_probs=240.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 012539 22 DVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA 98 (461)
Q Consensus 22 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 98 (461)
....|..+...+.+.|++++|+..|+++.+ .++.+|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 346788889999999999999999998753 478899999999999999999999999999864 3467789999999
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCch-------------------------------------H----------------
Q 012539 99 CTHLGALDQGRWAHVYIERNRLKMTV-------------------------------------T---------------- 125 (461)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------------------------------------~---------------- 125 (461)
+...|++++|...++. ......+.. .
T Consensus 103 ~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSV-LSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHHH-HC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHH-HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 9999999999998863 321111100 0
Q ss_pred --------------HHHHHHHHHHh--------cCCHHHHHHHHHhcCC--C-C-------HHHHHHHHHHHHhCCChHH
Q 012539 126 --------------LGTALVDMYSK--------CGNMNKAMDFFWGMKE--R-N-------VYTWTSVIGGLAMNGAGEK 173 (461)
Q Consensus 126 --------------~~~~li~~~~~--------~g~~~~A~~~~~~~~~--~-~-------~~~~~~li~~~~~~g~~~~ 173 (461)
....+...+.. .|++++|..+|+++.+ | + ..+|..+...+...|++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 22222222222 2478899999998875 3 2 2357777788999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 012539 174 SLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM- 252 (461)
Q Consensus 174 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~- 252 (461)
|+..|+++.+. .|+...+..+...+...|++++|...++.+.+. .+.+..++..+...|...|++++|...++++
T Consensus 262 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 262 AQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999885 566788888999999999999999999998763 2335788999999999999999999999988
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 253 PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 253 ~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
...| +...|..+...+...|++++|...++++.+..|.++.++..++.+|...|++++|.+.++++.+..
T Consensus 338 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 3334 456888899999999999999999999999999999999999999999999999999999987754
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-16 Score=146.15 Aligned_cols=270 Identities=10% Similarity=-0.023 Sum_probs=215.9
Q ss_pred HHHHHcCCHHHHHHHHhhCCCCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHH
Q 012539 31 SACAKCGDVDLARKMFDEMPERDP----IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALD 106 (461)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 106 (461)
.-....|+++.|+..++.....++ .....+..+|...|++++|+..++.. -.|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 344568999999999988765443 34566789999999999999877542 3567778888889999999999
Q ss_pred HHHHHHHHHHHcCC-CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 012539 107 QGRWAHVYIERNRL-KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185 (461)
Q Consensus 107 ~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 185 (461)
+|.+.++.+...+. |.+..++..+...|.+.|++++|++.|++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 99999999988764 44667778888999999999999999998 568889999999999999999999999999885
Q ss_pred CCCCHHHH---HHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHH
Q 012539 186 VRPNEVTF---VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGA 260 (461)
Q Consensus 186 ~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 260 (461)
.|+.... ..++..+...|++++|..+|+++.+. .+.++..++.+..++.+.|++++|...++++ ...| +..+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4664321 12334444569999999999999874 3557889999999999999999999999997 4445 5668
Q ss_pred HHHHHHHHHhcCChHH-HHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHH
Q 012539 261 WGALLNACRMYKNTEM-GELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINV 314 (461)
Q Consensus 261 ~~~ll~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 314 (461)
+..++..+...|+.++ +..+++++.+.+|+++.+ .....+.+.++++..-
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHH
Confidence 9999999999999876 678999999999998743 3445555555555443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-19 Score=168.69 Aligned_cols=250 Identities=12% Similarity=0.069 Sum_probs=117.6
Q ss_pred HcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 012539 35 KCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY 114 (461)
Q Consensus 35 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 114 (461)
+.|++++|.+.++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 678899999999999655 59999999999999999999999753 5788999999999999999999998887
Q ss_pred HHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 012539 115 IERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFV 194 (461)
Q Consensus 115 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 194 (461)
..+. .+++.+.+.|+.+|.++|+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 7774 4557888999999999999999998886 477889999999999999999999999976 3688
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 012539 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNT 274 (461)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 274 (461)
.++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCCH
Confidence 9999999999999999999877 26889999999999999999998776665444443 45688899999999
Q ss_pred HHHHHHHHHHhhccCCCcchHHHHHHHHhhc--CChhHHHHHH
Q 012539 275 EMGELASRKLVELETKNHGAYVLLSNIYAES--KNWDRVINVR 315 (461)
Q Consensus 275 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~ 315 (461)
++|..+++....+++.....|+.|..+|++- ++..+..+.|
T Consensus 224 eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 224 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999998888999998888765 3344444433
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-17 Score=157.92 Aligned_cols=276 Identities=12% Similarity=-0.003 Sum_probs=203.9
Q ss_pred cCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHH-HHHHHHHCCCC-c--CHHHHHHHHHHHhccCCHHHHHHH
Q 012539 36 CGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALH-LFHLMQIHDVK-L--NEVSMVSVLSACTHLGALDQGRWA 111 (461)
Q Consensus 36 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~~~~-p--~~~t~~~ll~~~~~~~~~~~a~~~ 111 (461)
.+.++.+...|+.+...+.. ++...|++++|++ .|++....... | +...+..+...+...|++++|...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 86 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLL 86 (368)
T ss_dssp ---------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34455555666665554433 3444588999998 88876653211 1 345677888999999999999999
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 012539 112 HVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP 188 (461)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 188 (461)
+..+++.. +.+..++..+...|.+.|++++|...|+++. ..+..+|..+...|...|++++|++.|+++.... |
T Consensus 87 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~ 163 (368)
T 1fch_A 87 FEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--P 163 (368)
T ss_dssp HHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--T
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--c
Confidence 99999875 5678888999999999999999999999876 3478899999999999999999999999998853 3
Q ss_pred CH-HHHHH---------------HHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 189 NE-VTFVS---------------VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 189 ~~-~~~~~---------------ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
+. ..+.. .+..+...|++++|...++.+.+...-.++..++..+...|.+.|++++|...++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 243 (368)
T 1fch_A 164 AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAA 243 (368)
T ss_dssp TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 32 22211 233344889999999999999864222224788999999999999999999999987
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 253 -PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 253 -~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
...| +..+|..+...+...|++++|...++++.+..|.+..++..++.+|.+.|++++|...+++..+.
T Consensus 244 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 244 LSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3344 56789999999999999999999999999999999999999999999999999999999998764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-17 Score=153.68 Aligned_cols=258 Identities=9% Similarity=-0.074 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 135 (461)
.|..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|...+.++.+.. +.+..++..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 44455555555555555555555555432 2244455555555555555555555555555543 334455555555666
Q ss_pred hcCCHHHHHHHHHhcCCC---CHHHHHHH--------------HH-HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012539 136 KCGNMNKAMDFFWGMKER---NVYTWTSV--------------IG-GLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197 (461)
Q Consensus 136 ~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 197 (461)
..|++++|.+.|+++... +...+..+ .. .+...|++++|++.++++.+.. +.+...+..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 666666666665554421 11122222 22 3667788889999998887753 33577788888
Q ss_pred HHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 012539 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTE 275 (461)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~ 275 (461)
..+...|++++|...++.+.+. .+.+...+..+...|...|++++|...++++ ...| +..+|..+...+...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 8888899999999999888753 2335678888899999999999999998887 3334 5668888888999999999
Q ss_pred HHHHHHHHHhhccCC------------CcchHHHHHHHHhhcCChhHHHHHHHHH
Q 012539 276 MGELASRKLVELETK------------NHGAYVLLSNIYAESKNWDRVINVRQIM 318 (461)
Q Consensus 276 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 318 (461)
+|...++++.+..|. +..++..+..+|...|++++|..++++.
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999988 6788999999999999999999988643
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-17 Score=157.97 Aligned_cols=231 Identities=11% Similarity=-0.020 Sum_probs=195.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHH
Q 012539 88 NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGG 164 (461)
Q Consensus 88 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 164 (461)
+...+..+...+.+.|++++|...++.+++.. +.+..++..+..+|.+.|++++|+..|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44568888999999999999999999999876 56788999999999999999999999998763 468899999999
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHH
Q 012539 165 LAMNGAGEKSLELFSLMKQAGVRPN-----------EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV 233 (461)
Q Consensus 165 ~~~~g~~~~A~~~~~~m~~~g~~p~-----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 233 (461)
|...|++++|++.|+++.+. .|+ ...+..+...+...|++++|..+++.+.+...-.+++.++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999874 333 12233457788899999999999999986522222578999999
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHH
Q 012539 234 DLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311 (461)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 311 (461)
..|.+.|++++|...++++ ...| +..+|..+...+...|++++|...++++.+..|.++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 3334 5779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 012539 312 INVRQIMKAK 321 (461)
Q Consensus 312 ~~~~~~m~~~ 321 (461)
...+++..+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-16 Score=146.19 Aligned_cols=247 Identities=7% Similarity=-0.047 Sum_probs=203.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCcCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 012539 61 LAGYAQCGKSREALHLFHLMQIHDVKLNE--VSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138 (461)
Q Consensus 61 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 138 (461)
|.-....|++.+|+..+++.... .|+. .....+..++...|+++.|...++. .-+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34556789999999999887553 4443 4556778999999999999876643 24667888899999999999
Q ss_pred CHHHHHHHHHhcC----CC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHH
Q 012539 139 NMNKAMDFFWGMK----ER-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213 (461)
Q Consensus 139 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 213 (461)
+.++|.+.++++. .| +...+..+...+.+.|++++|++.+++ +.+...+..+...+.+.|+.++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999874 23 567788888999999999999999997 456788889999999999999999999
Q ss_pred HHhhhhcCCccChhH---HHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcc
Q 012539 214 DSMRREYGIEPWLEH---YGCLVDLYGRAGRLDEALDVINKM--PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELE 288 (461)
Q Consensus 214 ~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 288 (461)
+.+.+. .|+... ...++..+...|++++|..+|+++ ....+...|+.+..++...|++++|...++++.+.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999764 455321 123345555669999999999998 223467789999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHhhcCChhH-HHHHHHHHHhCC
Q 012539 289 TKNHGAYVLLSNIYAESKNWDR-VINVRQIMKAKG 322 (461)
Q Consensus 289 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~g 322 (461)
|+++.++..++.++...|+.++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999976 578988887643
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=7.5e-17 Score=149.86 Aligned_cols=263 Identities=10% Similarity=0.016 Sum_probs=215.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 012539 22 DVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA 98 (461)
Q Consensus 22 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 98 (461)
+...+..+...+.+.|++++|..+|+++.+ .+...|..+...+...|++++|+..|+++.+.. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 445677888899999999999999998753 367889999999999999999999999998864 3467788899999
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchHHHHHH--------------HH-HHHhcCCHHHHHHHHHhcCC---CCHHHHHH
Q 012539 99 CTHLGALDQGRWAHVYIERNRLKMTVTLGTAL--------------VD-MYSKCGNMNKAMDFFWGMKE---RNVYTWTS 160 (461)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 160 (461)
+...|++++|...+..+.+.. +.+...+..+ .. .+...|++++|...|+++.+ .+..+|..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 999999999999999999865 3333333333 33 47788999999999998763 46789999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcC
Q 012539 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG 240 (461)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 240 (461)
+...|...|++++|++.++++.+.. +.+..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998853 345778889999999999999999999998763 2335788999999999999
Q ss_pred CHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCChHHHHHHHHHHhhccC
Q 012539 241 RLDEALDVINKM-PMKPH-------------AGAWGALLNACRMYKNTEMGELASRKLVELET 289 (461)
Q Consensus 241 ~~~~A~~~~~~~-~~~p~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 289 (461)
++++|...++++ ...|+ ..+|..+..++...|+.++|..++++..+..|
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 999999999887 22333 56888999999999999999999887765543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-15 Score=148.70 Aligned_cols=323 Identities=11% Similarity=-0.042 Sum_probs=219.0
Q ss_pred ccccCCchHHHHHHhcCC-----------CC-CHHHHHHHHHHHHHcCCHHHHHHHHhhCCC-----------CChhHHH
Q 012539 2 YAELGCLGYCQKVFDGIH-----------EP-DVVCQTAMISACAKCGDVDLARKMFDEMPE-----------RDPIAWN 58 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~-----------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----------~~~~~~~ 58 (461)
|...|+.++|++.|++.. .| ...+|+.+..+|...|++++|...|++..+ ....+++
T Consensus 61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~ 140 (472)
T 4g1t_A 61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC 140 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH
Confidence 446799999999987642 22 457899999999999999999998886531 1345777
Q ss_pred HHHHHHHHc--CChHHHHHHHHHHHHCCCCcC-HHHHHHHHHH---HhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 012539 59 AMLAGYAQC--GKSREALHLFHLMQIHDVKLN-EVSMVSVLSA---CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132 (461)
Q Consensus 59 ~li~~~~~~--g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 132 (461)
.+..++... +++++|++.|++..+. .|+ ...+..+..+ +...++.++|.+.+.+.++.. +.+..++..+..
T Consensus 141 ~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~ 217 (472)
T 4g1t_A 141 EEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLAL 217 (472)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHH
Confidence 777677665 4689999999999884 454 4444444444 345677788999999988875 455666666665
Q ss_pred HHHh----cCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhc-
Q 012539 133 MYSK----CGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVV- 203 (461)
Q Consensus 133 ~~~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~- 203 (461)
.+.. .|++++|.+.|++.. ..+..++..+...|...|++++|++.|++..+. .|+ ..++..+..+|...
T Consensus 218 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~ 295 (472)
T 4g1t_A 218 KLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKV 295 (472)
T ss_dssp HHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHH
Confidence 5554 467888999998765 356788999999999999999999999999885 444 56666665555332
Q ss_pred ------------------CcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH----
Q 012539 204 ------------------GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGA---- 260 (461)
Q Consensus 204 ------------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~---- 260 (461)
+..++|...+....+. -+.+...+..+...|...|++++|...|++. ...|+...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~ 373 (472)
T 4g1t_A 296 FQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL 373 (472)
T ss_dssp HHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHH
Confidence 3456777788777642 2334678888999999999999999999887 33454432
Q ss_pred HHHHHHH-HHhcCChHHHHHHHHHHhhc------------------------cCCCcchHHHHHHHHhhcCChhHHHHHH
Q 012539 261 WGALLNA-CRMYKNTEMGELASRKLVEL------------------------ETKNHGAYVLLSNIYAESKNWDRVINVR 315 (461)
Q Consensus 261 ~~~ll~~-~~~~~~~~~a~~~~~~~~~~------------------------~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 315 (461)
+..+... ....|+.++|+..++++.++ +|+++.+|..|..+|...|++++|++.|
T Consensus 374 ~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y 453 (472)
T 4g1t_A 374 HLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDS 453 (472)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2333322 45678899998888877654 5677889999999999999999999999
Q ss_pred HHHHhCCCccCCcccE
Q 012539 316 QIMKAKGVKKLPGCSV 331 (461)
Q Consensus 316 ~~m~~~g~~~~~~~s~ 331 (461)
++..+.|-......+|
T Consensus 454 ~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 454 ERGLESGSLIPSASSW 469 (472)
T ss_dssp ----------------
T ss_pred HHHHhcCCCCCcHhhc
Confidence 9998876543334444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-17 Score=169.62 Aligned_cols=128 Identities=16% Similarity=0.141 Sum_probs=109.2
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 012539 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK-------ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVT 192 (461)
Q Consensus 120 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 192 (461)
......+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456689999999999999999999997764 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCc-HHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHH
Q 012539 193 FVSVLRGCCVVGL-VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDV 248 (461)
Q Consensus 193 ~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 248 (461)
|++||.++++.|. .++|.++|++|.++ |+.||..+|++++....+.+-++...++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999999999887 57889999999876 9999999999998877776544444444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.4e-18 Score=170.25 Aligned_cols=147 Identities=13% Similarity=0.105 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhCC-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHH
Q 012539 23 VVCQTAMISACAKCGDVDLARKMFDEMP-------ERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSV 95 (461)
Q Consensus 23 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 95 (461)
..+||+||++|++.|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3689999999999999999999997753 579999999999999999999999999999999999999999999
Q ss_pred HHHHhccCC-HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CHHHHHHHHHHHHhCC
Q 012539 96 LSACTHLGA-LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER-----NVYTWTSVIGGLAMNG 169 (461)
Q Consensus 96 l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g 169 (461)
|.++++.|+ .++|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..+ .+.+...|.+.|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 999999998 4789999999999999999999999998877765555444443333321 1334445556666554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=5e-14 Score=139.02 Aligned_cols=304 Identities=14% Similarity=0.017 Sum_probs=246.2
Q ss_pred cCCchHHHHHHhcCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHhhCCCC-ChhHHHHHHHHHHH----cCChHHHH
Q 012539 5 LGCLGYCQKVFDGIHE-PDVVCQTAMISACAK----CGDVDLARKMFDEMPER-DPIAWNAMLAGYAQ----CGKSREAL 74 (461)
Q Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~ 74 (461)
.+++++|...|++..+ .++..+..|...|.. .+++++|...|++..+. ++..+..|...|.. .+++++|+
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 135 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESV 135 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 6788899999887643 577888889999998 89999999999986544 67788888888888 78999999
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHHHH
Q 012539 75 HLFHLMQIHDVKLNEVSMVSVLSACTH----LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK----CGNMNKAMDF 146 (461)
Q Consensus 75 ~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~ 146 (461)
..|++..+.| +...+..+...+.. .++.++|...+.+..+.+ +...+..|..+|.. .++.++|.+.
T Consensus 136 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 136 KWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 9999988865 56677777777776 778999999999988875 56677788888888 8999999999
Q ss_pred HHhcCC-CCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCcHHHHHHHHHHhh
Q 012539 147 FWGMKE-RNVYTWTSVIGGLAM----NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV----VGLVEEGREHFDSMR 217 (461)
Q Consensus 147 ~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 217 (461)
|+...+ .+..++..+...|.. .+++++|++.|++..+.| +...+..+...+.. .++.++|..+|+...
T Consensus 210 ~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~ 286 (490)
T 2xm6_A 210 YRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSA 286 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Confidence 987664 467788888888886 789999999999988754 45566667777776 789999999999886
Q ss_pred hhcCCccChhHHHHHHHHHHhc-----CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHhhccC
Q 012539 218 REYGIEPWLEHYGCLVDLYGRA-----GRLDEALDVINKMPMKPHAGAWGALLNACRMYK---NTEMGELASRKLVELET 289 (461)
Q Consensus 218 ~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~p 289 (461)
+. + ++..+..|..+|... +++++|...+++.....+...+..+...+...| +.++|...++++.+.
T Consensus 287 ~~-~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-- 360 (490)
T 2xm6_A 287 EQ-G---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-- 360 (490)
T ss_dssp TT-T---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--
T ss_pred Hc-C---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--
Confidence 53 2 456777788888887 899999999988733345667777777777655 788999999998876
Q ss_pred CCcchHHHHHHHHhh----cCChhHHHHHHHHHHhCCC
Q 012539 290 KNHGAYVLLSNIYAE----SKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 290 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 323 (461)
.++.++..|..+|.. .+++++|.+.+++..+.|.
T Consensus 361 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~ 398 (490)
T 2xm6_A 361 GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL 398 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC
Confidence 456788999999998 8999999999999888763
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.8e-14 Score=139.91 Aligned_cols=304 Identities=15% Similarity=-0.010 Sum_probs=258.3
Q ss_pred cCCchHHHHHHhcCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHhhCCCC-ChhHHHHHHHHHHH----cCChHHHH
Q 012539 5 LGCLGYCQKVFDGIHE-PDVVCQTAMISACAK----CGDVDLARKMFDEMPER-DPIAWNAMLAGYAQ----CGKSREAL 74 (461)
Q Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~ 74 (461)
.++.++|.+.|++..+ .++..+..|...|.. .+++++|...|++..+. ++.++..|...|.. .+++++|+
T Consensus 92 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 7899999999988754 578888889999998 89999999999987654 67889999999988 88999999
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHHHH
Q 012539 75 HLFHLMQIHDVKLNEVSMVSVLSACTH----LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK----CGNMNKAMDF 146 (461)
Q Consensus 75 ~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~ 146 (461)
+.|++..+.| +...+..+...+.. .++.++|...+.+..+.+ +...+..|..+|.. .+++++|...
T Consensus 172 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 172 EWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999998865 67788888888877 899999999999999875 45677778888886 8999999999
Q ss_pred HHhcCC-CCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc-----CcHHHHHHHHHHh
Q 012539 147 FWGMKE-RNVYTWTSVIGGLAM----NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV-----GLVEEGREHFDSM 216 (461)
Q Consensus 147 ~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~ 216 (461)
|+...+ .+..++..+...|.. .+++++|++.|++..+.| +...+..+...+... ++.++|..+|+..
T Consensus 246 ~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 246 FSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 998764 567788888888888 899999999999998764 455666777777776 8999999999998
Q ss_pred hhhcCCccChhHHHHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhccC
Q 012539 217 RREYGIEPWLEHYGCLVDLYGRAG---RLDEALDVINKMPMKPHAGAWGALLNACRM----YKNTEMGELASRKLVELET 289 (461)
Q Consensus 217 ~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p 289 (461)
.+. + +...+..|..+|...| ++++|.+.|++.-...++..+..|...|.. .+++++|...++++.+.+
T Consensus 323 ~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~- 397 (490)
T 2xm6_A 323 AEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG- 397 (490)
T ss_dssp HHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred Hhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-
Confidence 763 3 4567778888888766 789999999988334678888889888888 899999999999998865
Q ss_pred CCcchHHHHHHHHhh----cCChhHHHHHHHHHHhCCC
Q 012539 290 KNHGAYVLLSNIYAE----SKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 290 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 323 (461)
++.++..|..+|.. .+++++|...+++..+.+.
T Consensus 398 -~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 398 -LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 46789999999998 8999999999999988764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-15 Score=134.98 Aligned_cols=94 Identities=11% Similarity=0.041 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--c----hHHHH
Q 012539 55 IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM--T----VTLGT 128 (461)
Q Consensus 55 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~ 128 (461)
..|..+...+...|++++|+..|++..+.. ++..++..+..++...|++++|...+..+.+..... + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555566666666666666666655544 455555555555555555555555555554432100 0 23444
Q ss_pred HHHHHHHhcCCHHHHHHHHHhc
Q 012539 129 ALVDMYSKCGNMNKAMDFFWGM 150 (461)
Q Consensus 129 ~li~~~~~~g~~~~A~~~~~~~ 150 (461)
.+...|.+.|++++|...|++.
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a 105 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKS 105 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHH
Confidence 4444444444444444444443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.1e-15 Score=131.47 Aligned_cols=220 Identities=10% Similarity=-0.008 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C-------HHHH
Q 012539 89 EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--R-N-------VYTW 158 (461)
Q Consensus 89 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-------~~~~ 158 (461)
..++..+...+...|++++|...+..+++.. .+..++..+...|...|++++|...|+...+ | + ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567888889999999999999999999987 7788899999999999999999999998764 2 2 5789
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHh
Q 012539 159 TSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR 238 (461)
Q Consensus 159 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 238 (461)
..+...|...|++++|++.|++..+. .|+. ..+...|++++|...++.+... .+.+...+..+...+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHH
Confidence 99999999999999999999999884 4553 3456678999999999988752 23346788899999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHH
Q 012539 239 AGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316 (461)
Q Consensus 239 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 316 (461)
.|++++|...++++ ...| +..+|..+...+...|++++|...++++.+..|+++.+|..+..+|...|++++|.+.++
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999988 2233 567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhC
Q 012539 317 IMKAK 321 (461)
Q Consensus 317 ~m~~~ 321 (461)
+..+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.4e-15 Score=127.69 Aligned_cols=194 Identities=11% Similarity=0.019 Sum_probs=150.6
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012539 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197 (461)
Q Consensus 121 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 197 (461)
|++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 55667777788888888888888888887653 367788888888888999999999998888752 22466777888
Q ss_pred HHHhhc-----------CcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 012539 198 RGCCVV-----------GLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGAWGAL 264 (461)
Q Consensus 198 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 264 (461)
.++... |++++|...++...+. .| +...+..+..+|...|++++|...|++. ....+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 888888 9999999999988753 45 4778888999999999999999999887 212677889999
Q ss_pred HHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHH
Q 012539 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318 (461)
Q Consensus 265 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 318 (461)
...+...|++++|...++++.+..|+++.++..+..++...|++++|.+.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-14 Score=131.63 Aligned_cols=241 Identities=10% Similarity=-0.067 Sum_probs=179.6
Q ss_pred HcCChHHHHHHHHHHHHCCC--C-cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHH
Q 012539 66 QCGKSREALHLFHLMQIHDV--K-LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNK 142 (461)
Q Consensus 66 ~~g~~~~A~~~~~~m~~~~~--~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 142 (461)
..|++++|+..|+++.+... . .+..++..+...+...|++++|...+.++.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34677888888888876532 1 134567777778888888888888888888765 4567778888888888888888
Q ss_pred HHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhh
Q 012539 143 AMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219 (461)
Q Consensus 143 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (461)
|...|++... .+..+|..+...|...|++++|++.|+++.+. .|+.......+..+...|+.++|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888887763 36778888889999999999999999998874 455444444555566779999999999877653
Q ss_pred cCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcc
Q 012539 220 YGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH-----AGAWGALLNACRMYKNTEMGELASRKLVELETKNHG 293 (461)
Q Consensus 220 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 293 (461)
.+++...+ .++..+...++.++|...+++. ...|+ ..+|..+...+...|++++|...++++.+..|.+..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 23344444 4777778888888999988876 32232 467888888899999999999999999999987754
Q ss_pred hHHHHHHHHhhcCChhHHHHHH
Q 012539 294 AYVLLSNIYAESKNWDRVINVR 315 (461)
Q Consensus 294 ~~~~l~~~~~~~g~~~~a~~~~ 315 (461)
.+ ..++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 43 55677888888887765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-13 Score=135.58 Aligned_cols=315 Identities=10% Similarity=-0.012 Sum_probs=222.8
Q ss_pred ccCCchHHHHHHhcCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhHHHHHHHH-HHHcCChHHHHH--
Q 012539 4 ELGCLGYCQKVFDGIHE--P-DVVCQTAMISACAKCGDVDLARKMFDEMPE--RDPIAWNAMLAG-YAQCGKSREALH-- 75 (461)
Q Consensus 4 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~-~~~~g~~~~A~~-- 75 (461)
+.|+++.|+.+|+++++ | +...|..++..+.+.|++++|..+|++... |++..|...+.. ....|+.++|.+
T Consensus 24 ~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~ 103 (530)
T 2ooe_A 24 QNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKM 103 (530)
T ss_dssp HSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHH
Confidence 46899999999998753 3 677899999999999999999999998764 566777777753 335677766655
Q ss_pred --HHHHHHH-CCCCc-CHHHHHHHHHHHhc---------cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH--------
Q 012539 76 --LFHLMQI-HDVKL-NEVSMVSVLSACTH---------LGALDQGRWAHVYIERNRLKMTVTLGTALVDMY-------- 134 (461)
Q Consensus 76 --~~~~m~~-~~~~p-~~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-------- 134 (461)
+|++... .|..| +...|...+..... .|+++.|..+|++.++....+...+|.......
T Consensus 104 ~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~ 183 (530)
T 2ooe_A 104 AQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLA 183 (530)
T ss_dssp HHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHH
Confidence 6666554 34444 44556655555433 567788888888777631111112222211100
Q ss_pred -----HhcCCHH------------------------------------------------------------HHHHHHHh
Q 012539 135 -----SKCGNMN------------------------------------------------------------KAMDFFWG 149 (461)
Q Consensus 135 -----~~~g~~~------------------------------------------------------------~A~~~~~~ 149 (461)
.+.++++ .|..+|++
T Consensus 184 ~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~ 263 (530)
T 2ooe_A 184 KKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQ 263 (530)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHH
Confidence 0111222 33344444
Q ss_pred cCC---CCHHHHHHHHHHHHh-------CCChH-------HHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCcHHHHHH
Q 012539 150 MKE---RNVYTWTSVIGGLAM-------NGAGE-------KSLELFSLMKQAGVRP-NEVTFVSVLRGCCVVGLVEEGRE 211 (461)
Q Consensus 150 ~~~---~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~ 211 (461)
... .+...|..++..+.+ .|+++ +|.++|++..+. +.| +...+..++..+...|++++|..
T Consensus 264 al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~ 342 (530)
T 2ooe_A 264 CLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHS 342 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHH
Confidence 432 255667777777665 68877 899999998753 244 47788888888899999999999
Q ss_pred HHHHhhhhcCCccC-h-hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCChHHHHHHHHHHhh
Q 012539 212 HFDSMRREYGIEPW-L-EHYGCLVDLYGRAGRLDEALDVINKM-PMKPH-AGAWGALLNA-CRMYKNTEMGELASRKLVE 286 (461)
Q Consensus 212 ~~~~~~~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~ 286 (461)
+|+.+++ +.|+ . ..|..++..+.+.|++++|..+|++. ...|+ ...|...... +...|+.++|..+|+++.+
T Consensus 343 ~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~ 419 (530)
T 2ooe_A 343 IYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK 419 (530)
T ss_dssp HHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 9999875 3554 2 47888888899999999999999988 33333 2233322222 3468999999999999999
Q ss_pred ccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 287 LETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 287 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
..|+++..|..++..+.+.|+.++|..+|++....+
T Consensus 420 ~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 420 KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 999999999999999999999999999999998764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.4e-14 Score=128.37 Aligned_cols=250 Identities=10% Similarity=0.000 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcC--HHHHHHHHHHH
Q 012539 25 CQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLN--EVSMVSVLSAC 99 (461)
Q Consensus 25 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~ 99 (461)
.+......+.+.|++++|+..|++..+ .+...|..+...|...|++++|+..|++..+....|+ ..+|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344455666677777777777776532 2445666677777777777777777777666321111 22356666666
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHH
Q 012539 100 THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLE 176 (461)
Q Consensus 100 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 176 (461)
...|++++|...+..+.+.. +.+..++..+...|...|++++|...|++..+ .+...|..+...+...+++++|++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777666654 33455666666666666666666666666553 244555555522223346666666
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhhcCc---HHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 177 LFSLMKQAGVRPN-EVTFVSVLRGCCVVGL---VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 177 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
.|+++.+. .|+ ...+..+..++...|+ .++|...++.+.+...-.|+.. -.
T Consensus 164 ~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~---------------------- 218 (272)
T 3u4t_A 164 SFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-KD---------------------- 218 (272)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-HH----------------------
T ss_pred HHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-hH----------------------
Confidence 66666553 222 3444444444444444 4444444444332211111110 00
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHh
Q 012539 253 PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303 (461)
Q Consensus 253 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 303 (461)
....+|..+...+...|++++|...++++.+++|+++.+...+.....
T Consensus 219 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 219 ---ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 001356666677888888888888888988888888766665554443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=5e-14 Score=123.02 Aligned_cols=193 Identities=11% Similarity=0.018 Sum_probs=116.0
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 012539 53 DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132 (461)
Q Consensus 53 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 132 (461)
++..|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++++++.. |.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34455666666666666666666666665532 2245555666666666666666666666666654 344555556666
Q ss_pred HHHhc-----------CCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012539 133 MYSKC-----------GNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198 (461)
Q Consensus 133 ~~~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 198 (461)
+|.+. |++++|+..|++..+ .+...|..+...|...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 66666 777777777776552 345667777777777777777777777777665 56666777777
Q ss_pred HHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 199 GCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
++...|++++|...|+...+. .| +...+..+...+.+.|++++|...+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777777777777642 33 4566667777777777777777776654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.62 E-value=5.3e-13 Score=139.72 Aligned_cols=280 Identities=13% Similarity=0.083 Sum_probs=225.0
Q ss_pred ccccCCchHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQ 81 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 81 (461)
+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. ++.+|..+..++...|++++|++.|.+.
T Consensus 1059 ai~lglyEEAf~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 4567899999999999752 2222333433 7789999999998773 4788999999999999999999999663
Q ss_pred HCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHH
Q 012539 82 IHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSV 161 (461)
Q Consensus 82 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 161 (461)
-|...|..++.+|.+.|+++++.+.+....+.. +++.+.+.++.+|++.+++++..... ..++...|..+
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~i 1201 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQV 1201 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHH
Confidence 477888899999999999999999999888765 33334445999999999999644443 45677788889
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCC
Q 012539 162 IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241 (461)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 241 (461)
...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +..+|..+..++...|+
T Consensus 1202 Gd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A 1202 GDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKE 1265 (1630)
T ss_pred HHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhH
Confidence 99999999999999999984 478899999999999999999998662 45788888889999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhc--CChhHHHHHHH
Q 012539 242 LDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAES--KNWDRVINVRQ 316 (461)
Q Consensus 242 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 316 (461)
+..|......+ ..++..+..++..|...|.+++|+.+++...+++|.....|.-|..+|++. ++..++.+.|.
T Consensus 1266 f~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1266 FRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999877653 445666778888999999999999999999999988888888888887754 33444444443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=7.1e-14 Score=132.37 Aligned_cols=246 Identities=9% Similarity=-0.011 Sum_probs=202.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCchHHHHHHH
Q 012539 53 DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGA-LDQGRWAHVYIERNRLKMTVTLGTALV 131 (461)
Q Consensus 53 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li 131 (461)
+...|+.+...+...|++++|++.|++.++.. +-+..+|..+..++...|+ +++|...++++++.. +.+..+|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 35678899999999999999999999999853 2256788889999999996 999999999999986 55788899999
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh-cCcHH
Q 012539 132 DMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV-VGLVE 207 (461)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~ 207 (461)
.+|.+.|++++|+..|+++.. .+..+|..+..++.+.|++++|+..|+++.+.. +-+...|+.+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999998873 578899999999999999999999999998853 2357888888888888 66656
Q ss_pred HH-----HHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcC--CHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC------
Q 012539 208 EG-----REHFDSMRREYGIEP-WLEHYGCLVDLYGRAG--RLDEALDVINKMPMKPH-AGAWGALLNACRMYK------ 272 (461)
Q Consensus 208 ~a-----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~~------ 272 (461)
+| +..++..++ +.| +...|..+..+|...| ++++|.+.+.++...|+ ...+..+...+...|
T Consensus 253 eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 477877764 355 4678888888999888 68999998888744554 457788888887764
Q ss_pred ---ChHHHHHHHHHH-hhccCCCcchHHHHHHHHhh
Q 012539 273 ---NTEMGELASRKL-VELETKNHGAYVLLSNIYAE 304 (461)
Q Consensus 273 ---~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 304 (461)
..++|..+++++ .+++|.....|..+...+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258999999999 89999988888887776653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-13 Score=123.14 Aligned_cols=214 Identities=9% Similarity=-0.065 Sum_probs=175.0
Q ss_pred ccccCCchHHHHHHhcCC--C-CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC----hhHHHHHHHHHHHcCChHH
Q 012539 2 YAELGCLGYCQKVFDGIH--E-PDVVCQTAMISACAKCGDVDLARKMFDEMPE--RD----PIAWNAMLAGYAQCGKSRE 72 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~ 72 (461)
|.+.|++++|+..|+++. . .+..++..+...|.+.|++++|+..|++..+ ++ ..+|..+...|...|++++
T Consensus 13 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~ 92 (272)
T 3u4t_A 13 LFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSL 92 (272)
T ss_dssp HHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHH
Confidence 467899999999999875 2 3556899999999999999999999998654 22 2358999999999999999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHH-HHHHhcCCHHHHHHHHHhcC
Q 012539 73 ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV-DMYSKCGNMNKAMDFFWGMK 151 (461)
Q Consensus 73 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~ 151 (461)
|+..|++..+.. +.+..++..+...+...|++++|...+.++++.. +.+..++..+. ..|. .+++++|.+.|++..
T Consensus 93 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~ 169 (272)
T 3u4t_A 93 AIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEYVKADSSFVKVL 169 (272)
T ss_dssp HHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999998854 3366789999999999999999999999998874 55677777788 5554 569999999999877
Q ss_pred C---CCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHhhcCcHHHHHHHHHHhhh
Q 012539 152 E---RNVYTWTSVIGGLAMNGA---GEKSLELFSLMKQAG-VRPN------EVTFVSVLRGCCVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 152 ~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (461)
+ .+...|..+...+...|+ +++|...|++..+.. -.|+ ..+|..+...+...|++++|...++.+.+
T Consensus 170 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 170 ELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249 (272)
T ss_dssp HHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3 357788888999998888 888999999987642 1233 24667777888888999999999988875
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.61 E-value=6.7e-13 Score=132.28 Aligned_cols=313 Identities=8% Similarity=-0.005 Sum_probs=222.6
Q ss_pred cccCCchHHHHHHhcCCC--CCHHHHHHHHHH-HHHcCCHHHHHH----HHhhCC------CCChhHHHHHHHHHHH---
Q 012539 3 AELGCLGYCQKVFDGIHE--PDVVCQTAMISA-CAKCGDVDLARK----MFDEMP------ERDPIAWNAMLAGYAQ--- 66 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~-~~~~g~~~~A~~----~~~~m~------~~~~~~~~~li~~~~~--- 66 (461)
.+.|+++.|+.+|++++. |++..|...+.. ....|+++.|.+ +|++.. .++...|...+....+
T Consensus 57 ~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~ 136 (530)
T 2ooe_A 57 IKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEA 136 (530)
T ss_dssp HHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCC
T ss_pred HhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCC
Confidence 457889999999988763 777778777753 334566665554 665432 1245677777766554
Q ss_pred ------cCChHHHHHHHHHHHHCCCCcCHHHHHHHHH-------------------------------------------
Q 012539 67 ------CGKSREALHLFHLMQIHDVKLNEVSMVSVLS------------------------------------------- 97 (461)
Q Consensus 67 ------~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~------------------------------------------- 97 (461)
.|++++|..+|++.++....+....|.....
T Consensus 137 ~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~ 216 (530)
T 2ooe_A 137 VGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAP 216 (530)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSC
T ss_pred cccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 6778888888887776211111122221111
Q ss_pred ----------------------HHhc----cCCH----HHHHHHHHHHHHcCCCCchHHHHHHHHHHHh-------cCCH
Q 012539 98 ----------------------ACTH----LGAL----DQGRWAHVYIERNRLKMTVTLGTALVDMYSK-------CGNM 140 (461)
Q Consensus 98 ----------------------~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~ 140 (461)
.... .++. +.+..++++++... +.+..+|..++..+.+ .|++
T Consensus 217 ~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~ 295 (530)
T 2ooe_A 217 SVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDM 295 (530)
T ss_dssp CCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred cCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccch
Confidence 0000 0011 23445566665543 4566777777777775 7998
Q ss_pred H-------HHHHHHHhcCC---C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhhcCcHH
Q 012539 141 N-------KAMDFFWGMKE---R-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE--VTFVSVLRGCCVVGLVE 207 (461)
Q Consensus 141 ~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~ 207 (461)
+ +|..+|++... | +...|..++..+.+.|++++|..+|+++.+ ..|+. ..|..++..+.+.|+.+
T Consensus 296 ~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~ 373 (530)
T 2ooe_A 296 NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIK 373 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHH
Confidence 7 89999998763 3 678999999999999999999999999998 45652 47888888888999999
Q ss_pred HHHHHHHHhhhhcCCccC-hhHHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 012539 208 EGREHFDSMRREYGIEPW-LEHYGCLVDL-YGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRK 283 (461)
Q Consensus 208 ~a~~~~~~~~~~~~~~p~-~~~~~~li~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 283 (461)
+|..+|+...+. .|. ...|...+.. +...|+.++|..+|++. ...| +...|..++..+...|+.+.|..+|++
T Consensus 374 ~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 374 SGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp HHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 999999998753 343 3334333322 34689999999999987 3334 567999999999999999999999999
Q ss_pred HhhccCCCcc----hHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 284 LVELETKNHG----AYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 284 ~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
+....|.++. .|...+......|+.+.+..+.+++.+.
T Consensus 451 al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 451 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9998776554 7777788888999999999999998764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=9.3e-13 Score=119.19 Aligned_cols=226 Identities=13% Similarity=-0.027 Sum_probs=136.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCchHHHH
Q 012539 53 DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH----LGALDQGRWAHVYIERNRLKMTVTLGT 128 (461)
Q Consensus 53 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 128 (461)
++.++..+...|...|++++|+..|++..+. -+..++..+...+.. .+++++|...+.+..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455666666666666666666666666652 234455555556665 666666666666666654 445555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhcCC-CCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012539 129 ALVDMYSK----CGNMNKAMDFFWGMKE-RNVYTWTSVIGGLAM----NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRG 199 (461)
Q Consensus 129 ~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 199 (461)
.+..+|.. .+++++|...|++..+ .+..++..+...|.. .+++++|++.|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 56666666 6666666666665543 355566666666666 667777777777766644 34455555555
Q ss_pred Hhh----cCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 012539 200 CCV----VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR----AGRLDEALDVINKMPMKPHAGAWGALLNACRM- 270 (461)
Q Consensus 200 ~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~- 270 (461)
+.. .++.++|...|+...+. + ++..+..+..+|.. .+++++|...|++.-...+...+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 655 66777777777666542 1 34555566666666 66666666666655111224455555555665
Q ss_pred ---cCChHHHHHHHHHHhhccCCC
Q 012539 271 ---YKNTEMGELASRKLVELETKN 291 (461)
Q Consensus 271 ---~~~~~~a~~~~~~~~~~~p~~ 291 (461)
.+++++|...++++.+.+|++
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHH
Confidence 666777777777776666653
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=8.4e-14 Score=125.84 Aligned_cols=238 Identities=10% Similarity=-0.136 Sum_probs=167.1
Q ss_pred HcCCHHHHHHHHhhCCCC-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHH
Q 012539 35 KCGDVDLARKMFDEMPER-------DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQ 107 (461)
Q Consensus 35 ~~g~~~~A~~~~~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 107 (461)
..|++++|+..|+++.+. +..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346777888887776542 35677788888888888888888888887753 2356778888888888888888
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 012539 108 GRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG 185 (461)
Q Consensus 108 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 185 (461)
|...+..+++.. +.+..++..+..+|.+.|++++|...|+++.+ |+.......+..+...|++++|+..+++....
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 888888888764 44567777888888888888888888887763 43333344444556668889999999877665
Q ss_pred CCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH
Q 012539 186 VRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-----LEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAG 259 (461)
Q Consensus 186 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~ 259 (461)
.+++...+ .++..+...++.++|...+....+ ..|+ ...+..+...|.+.|++++|...|+++ ...|+..
T Consensus 174 ~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 174 SDKEQWGW-NIVEFYLGNISEQTLMERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 23444444 366667777888888888887753 2332 567888888999999999999999887 4455332
Q ss_pred HHHHHHHHHHhcCChHHHHHHH
Q 012539 260 AWGALLNACRMYKNTEMGELAS 281 (461)
Q Consensus 260 ~~~~ll~~~~~~~~~~~a~~~~ 281 (461)
.....++...|++++|...+
T Consensus 250 --~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 --VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHhhHHHH
Confidence 22344566677777777665
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4.3e-13 Score=119.63 Aligned_cols=204 Identities=10% Similarity=-0.027 Sum_probs=96.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 133 (461)
+..|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...+.++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4456666666666666666666666665532 2234455555555555555555555555555443 2233344444444
Q ss_pred HHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHH
Q 012539 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREH 212 (461)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 212 (461)
|...|++++|.+.|+++ ...+..|+ ...+..+...+...|++++|...
T Consensus 115 ~~~~g~~~~A~~~~~~~-------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEA-------------------------------SQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp HHHTTCHHHHHHHHHHH-------------------------------TTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHH-------------------------------HhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444444444444443 32111221 22333333444444444444444
Q ss_pred HHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCC
Q 012539 213 FDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETK 290 (461)
Q Consensus 213 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 290 (461)
++.+.+. .+.+...+..+...|...|++++|...++++ ...| +...+..+...+...|+.++|...++++.+..|+
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 4444321 0112334444444444455555555444443 1122 2334444445555555666666666666655555
Q ss_pred Cc
Q 012539 291 NH 292 (461)
Q Consensus 291 ~~ 292 (461)
++
T Consensus 242 ~~ 243 (252)
T 2ho1_A 242 SL 243 (252)
T ss_dssp SH
T ss_pred CH
Confidence 54
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.59 E-value=8.1e-13 Score=138.31 Aligned_cols=281 Identities=11% Similarity=0.077 Sum_probs=223.7
Q ss_pred ccCCchHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012539 4 ELGCLGYCQKVFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH 83 (461)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 83 (461)
+.|++++|.++.++. .++.+|..+..++.+.|++++|+..|.+. .|...|..++.++.+.|++++|++.|...++.
T Consensus 1088 ~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~ 1163 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 1163 (1630)
T ss_pred HHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 446677777777665 45789999999999999999999999774 78889999999999999999999999987775
Q ss_pred CCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHH
Q 012539 84 DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIG 163 (461)
Q Consensus 84 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 163 (461)
. ++....+.++.+|++.+++++...+. + .++...+..+.+.|...|++++|..+|... ..|..+..
T Consensus 1164 ~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~ 1229 (1630)
T 1xi4_A 1164 A--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 1229 (1630)
T ss_pred c--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHH
Confidence 4 34333445888999999988644442 2 345566667999999999999999999985 59999999
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHH
Q 012539 164 GLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLD 243 (461)
Q Consensus 164 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 243 (461)
+|.+.|++++|++.+++. .+..+|..+-.+|...|++..|......+ ..++..+..++..|.+.|.++
T Consensus 1230 tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~fe 1297 (1630)
T 1xi4_A 1230 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFE 1297 (1630)
T ss_pred HHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999976 35688999999999999999998876533 345667889999999999999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhc--CChHHHHHHHHHHhhccC-----CCcchHHHHHHHHhhcCChhHHHHH
Q 012539 244 EALDVINKM-PMKPH-AGAWGALLNACRMY--KNTEMGELASRKLVELET-----KNHGAYVLLSNIYAESKNWDRVINV 314 (461)
Q Consensus 244 ~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~~ 314 (461)
+|+.+++.. +..|. ...|.-|...+.+. ++..++.+.|..-..+.| .+...|.-+...|.+.|+|+.|...
T Consensus 1298 EAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1298 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 999999776 44443 33665565555554 455566666665555444 4667899999999999999999853
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=6.2e-14 Score=124.19 Aligned_cols=172 Identities=13% Similarity=0.030 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 012539 126 LGTALVDMYSKCGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202 (461)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 202 (461)
++..+...|.+.|++++|...|++.. ..+..+|..+...|...|++++|++.|+++.+.. +.+...+..+...+..
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 137 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVK 137 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 33333444444444444444444332 1233444444555555555555555555554432 2234445555555555
Q ss_pred cCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHH
Q 012539 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMK-PHAGAWGALLNACRMYKNTEMGELA 280 (461)
Q Consensus 203 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~ 280 (461)
.|++++|...++.+.+. .+.+...+..+...|.+.|++++|...++++ ... .+..+|..+...+...|++++|...
T Consensus 138 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 215 (243)
T 2q7f_A 138 LEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM 215 (243)
T ss_dssp TSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred hccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHH
Confidence 55555555555555432 1223445555555666666666666666554 112 2344666666667777777777777
Q ss_pred HHHHhhccCCCcchHHHHHH
Q 012539 281 SRKLVELETKNHGAYVLLSN 300 (461)
Q Consensus 281 ~~~~~~~~p~~~~~~~~l~~ 300 (461)
++++.+..|++..++..+..
T Consensus 216 ~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 216 LDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHTC
T ss_pred HHHHHccCcchHHHHHHHHH
Confidence 77777777776655554443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.59 E-value=5e-13 Score=119.19 Aligned_cols=195 Identities=10% Similarity=-0.025 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 012539 23 VVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSAC 99 (461)
Q Consensus 23 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 99 (461)
...|..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 57788999999999999999999998653 467899999999999999999999999998864 33678888999999
Q ss_pred hccCCHHHHHHHHHHHHHcCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHH
Q 012539 100 THLGALDQGRWAHVYIERNRLKM-TVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSL 175 (461)
Q Consensus 100 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 175 (461)
...|++++|...+..+.+.+..| +..++..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998833333 567788888999999999999999987753 46778888888999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhh
Q 012539 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219 (461)
Q Consensus 176 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (461)
..|+++.+.. +.+...+..+...+...|+.++|..+++.+.+.
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999887742 345667777777888889999999888888653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.7e-13 Score=115.81 Aligned_cols=204 Identities=11% Similarity=-0.052 Sum_probs=88.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 133 (461)
+..|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...+..+.+.. +.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~--------- 76 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSA--------- 76 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH---------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCh---------
Confidence 3445555555555555555555555554432 1233344444444444444444444444444432 2223
Q ss_pred HHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhC-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHH
Q 012539 134 YSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMN-GAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGRE 211 (461)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~ 211 (461)
.+|..+...+... |++++|+..|+++.+.+..|+ ...+..+..++...|++++|..
T Consensus 77 ----------------------~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 77 ----------------------EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp ----------------------HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 3333333444444 444444444444433111222 2333344444444444444444
Q ss_pred HHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcc
Q 012539 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMK--PHAGAWGALLNACRMYKNTEMGELASRKLVELE 288 (461)
Q Consensus 212 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 288 (461)
.++.+.+. .+.+...+..+...|.+.|++++|...++++ ... .+...+..+...+...|+.+.+..+++.+.+..
T Consensus 135 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 135 YLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 44444321 1112334444444444444444444444443 111 223334444444455555555555555555555
Q ss_pred CCCc
Q 012539 289 TKNH 292 (461)
Q Consensus 289 p~~~ 292 (461)
|+++
T Consensus 213 p~~~ 216 (225)
T 2vq2_A 213 PYSE 216 (225)
T ss_dssp TTCH
T ss_pred CCCH
Confidence 5554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.3e-13 Score=117.08 Aligned_cols=200 Identities=12% Similarity=-0.006 Sum_probs=171.2
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012539 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197 (461)
Q Consensus 121 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 197 (461)
+.+..++..+...|...|++++|.+.|+.+.+ .+...|..+...|...|++++|.+.|+++.+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 34566778888889999999999999987663 467789999999999999999999999998753 34677888899
Q ss_pred HHHhhc-CcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 012539 198 RGCCVV-GLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKN 273 (461)
Q Consensus 198 ~~~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~ 273 (461)
..+... |++++|...++.+.+ .+..|+ ...+..+...+...|++++|...++++ ...| +...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 999999 999999999999976 234443 678889999999999999999999887 3334 46788889999999999
Q ss_pred hHHHHHHHHHHhhccC-CCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 274 TEMGELASRKLVELET-KNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 274 ~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
+++|...++++.+..| .+...+..+...+...|+.++|..+++.+.+..
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 9999999999999999 888899999999999999999999999987643
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-13 Score=131.40 Aligned_cols=263 Identities=12% Similarity=0.021 Sum_probs=140.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC-CchHHH
Q 012539 57 WNAMLAGYAQCGKSREALHLFHLMQIHDVKLN----EVSMVSVLSACTHLGALDQGRWAHVYIERN----RLK-MTVTLG 127 (461)
Q Consensus 57 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 127 (461)
+..+...+...|++++|+..|++..+.+. .+ ...+..+...+...|++++|...+.++... +.+ ....++
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 33344444444444444444444444211 11 123334444444444444444444443321 111 113344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHhCCC--------------------hHHHHHHH
Q 012539 128 TALVDMYSKCGNMNKAMDFFWGMKE-----RN----VYTWTSVIGGLAMNGA--------------------GEKSLELF 178 (461)
Q Consensus 128 ~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~ 178 (461)
..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|++.+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 4455555555555555555554432 11 2355555556666666 66666666
Q ss_pred HHHHHc----CCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC----hhHHHHHHHHHHhcCCHHHHHHHH
Q 012539 179 SLMKQA----GVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW----LEHYGCLVDLYGRAGRLDEALDVI 249 (461)
Q Consensus 179 ~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~ 249 (461)
++.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 554331 11111 234555666666677777777777666542111111 235666677777777777777776
Q ss_pred HhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC------cchHHHHHHHHhhcCChhHHHHHH
Q 012539 250 NKM----PMKPH----AGAWGALLNACRMYKNTEMGELASRKLVELETKN------HGAYVLLSNIYAESKNWDRVINVR 315 (461)
Q Consensus 250 ~~~----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~ 315 (461)
++. +..++ ..++..+...+...|++++|...++++.+..+.. ..++..+..+|...|++++|.+.+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 655 11111 3356666667777888888888887777654332 446777888888888888888888
Q ss_pred HHHHh
Q 012539 316 QIMKA 320 (461)
Q Consensus 316 ~~m~~ 320 (461)
++..+
T Consensus 331 ~~al~ 335 (406)
T 3sf4_A 331 EKHLE 335 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-12 Score=116.84 Aligned_cols=224 Identities=15% Similarity=-0.009 Sum_probs=195.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CCHHHHHHHH
Q 012539 88 NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK----CGNMNKAMDFFWGMKE-RNVYTWTSVI 162 (461)
Q Consensus 88 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 162 (461)
+..++..+...+...+++++|...+.+..+. .+...+..+..+|.. .|++++|...|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5667888888999999999999999999983 355677789999999 9999999999998764 4788999999
Q ss_pred HHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCcHHHHHHHHHHhhhhcCCccChhHHHHHHH
Q 012539 163 GGLAM----NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV----VGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234 (461)
Q Consensus 163 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 234 (461)
..|.. .+++++|++.|++..+.+ +...+..+...|.. .++.++|...|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999998865 67788888889998 99999999999998763 3 5667888888
Q ss_pred HHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhccCCCcchHHHHHHHHhh--
Q 012539 235 LYGR----AGRLDEALDVINKMPMKPHAGAWGALLNACRM----YKNTEMGELASRKLVELETKNHGAYVLLSNIYAE-- 304 (461)
Q Consensus 235 ~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 304 (461)
.|.. .+++++|...|++.-...+...+..+...+.. .+++++|...++++.+.+| +..+..|..+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 9988 99999999999987323466788888888999 9999999999999998876 5688999999999
Q ss_pred --cCChhHHHHHHHHHHhCCC
Q 012539 305 --SKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 305 --~g~~~~a~~~~~~m~~~g~ 323 (461)
.+++++|.+.+++..+.|.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999988764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-13 Score=132.07 Aligned_cols=265 Identities=11% Similarity=-0.013 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHc----C-CCCchHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE----VSMVSVLSACTHLGALDQGRWAHVYIERN----R-LKMTVTL 126 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 126 (461)
.+..+...+...|++++|+..|+++.+.+.. +. ..+..+...+...|++++|...+.++++. + .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 4556667788888888888888888775321 22 36777777888888888888888877653 1 1223556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC---------CHHHHHHHHHHHHhCCC-----------------hHHHHHHHHH
Q 012539 127 GTALVDMYSKCGNMNKAMDFFWGMKER---------NVYTWTSVIGGLAMNGA-----------------GEKSLELFSL 180 (461)
Q Consensus 127 ~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~ 180 (461)
+..+...|...|++++|...|++.... ...+|..+...|...|+ +++|++.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 777888888888888888888776531 23577788888888888 8888888887
Q ss_pred HHHc----CCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC----hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012539 181 MKQA----GVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW----LEHYGCLVDLYGRAGRLDEALDVINK 251 (461)
Q Consensus 181 m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (461)
..+. +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6542 11121 346777788888899999999998887653211112 23778888899999999999998877
Q ss_pred C----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCC------CcchHHHHHHHHhhcCChhHHHHHHHH
Q 012539 252 M----PMKPH----AGAWGALLNACRMYKNTEMGELASRKLVELETK------NHGAYVLLSNIYAESKNWDRVINVRQI 317 (461)
Q Consensus 252 ~----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 317 (461)
. +...+ ..++..+...+...|++++|...++++.+..+. ...++..+..+|...|++++|.+.+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6 11111 347777888899999999999999998876433 234788899999999999999999998
Q ss_pred HHhC
Q 012539 318 MKAK 321 (461)
Q Consensus 318 m~~~ 321 (461)
..+.
T Consensus 369 al~~ 372 (411)
T 4a1s_A 369 HLQL 372 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8663
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-13 Score=127.67 Aligned_cols=263 Identities=13% Similarity=0.026 Sum_probs=159.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC-CchHHHH
Q 012539 58 NAMLAGYAQCGKSREALHLFHLMQIHDVKLN----EVSMVSVLSACTHLGALDQGRWAHVYIERN----RLK-MTVTLGT 128 (461)
Q Consensus 58 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~ 128 (461)
......+...|++++|+..|+++.+.... + ...+..+...+...|++++|...+.++.+. +.+ ....++.
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 33444455555555555555555543211 1 234444555555555555555555544321 111 1234455
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHhCCC--------------------hHHHHHHHH
Q 012539 129 ALVDMYSKCGNMNKAMDFFWGMKE-----RN----VYTWTSVIGGLAMNGA--------------------GEKSLELFS 179 (461)
Q Consensus 129 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~ 179 (461)
.+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|++.++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 566666666666666666655432 11 2356666666666666 677777666
Q ss_pred HHHHc----CCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC----hhHHHHHHHHHHhcCCHHHHHHHHH
Q 012539 180 LMKQA----GVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW----LEHYGCLVDLYGRAGRLDEALDVIN 250 (461)
Q Consensus 180 ~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 250 (461)
+.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|...++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 65431 11111 335666667777778888888877776542111111 2367777788888888888888877
Q ss_pred hC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC------cchHHHHHHHHhhcCChhHHHHHHH
Q 012539 251 KM----PMKPH----AGAWGALLNACRMYKNTEMGELASRKLVELETKN------HGAYVLLSNIYAESKNWDRVINVRQ 316 (461)
Q Consensus 251 ~~----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~ 316 (461)
+. +..++ ..++..+...+...|++++|...++++.+..+.. ..++..+..+|...|++++|.+.++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 65 11122 3466777777888999999999998887754332 3477889999999999999999999
Q ss_pred HHHhC
Q 012539 317 IMKAK 321 (461)
Q Consensus 317 ~m~~~ 321 (461)
+..+.
T Consensus 328 ~a~~~ 332 (338)
T 3ro2_A 328 KHLEI 332 (338)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 88764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.1e-12 Score=124.42 Aligned_cols=295 Identities=10% Similarity=-0.037 Sum_probs=217.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHhhCCC------------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-----C
Q 012539 22 DVVCQTAMISACAKCGDVDLARKMFDEMPE------------RDPIAWNAMLAGYAQCGKSREALHLFHLMQIH-----D 84 (461)
Q Consensus 22 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~ 84 (461)
....||.|...|...|++++|++.|++..+ ....+|+.+...|...|++++|+..+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 356799999999999999999999987431 24568999999999999999999999887652 1
Q ss_pred -CCc-CHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH---HhcCCHHHHHHHHHhcC---CCC
Q 012539 85 -VKL-NEVSMVSVLSACTHL--GALDQGRWAHVYIERNRLKMTVTLGTALVDMY---SKCGNMNKAMDFFWGMK---ERN 154 (461)
Q Consensus 85 -~~p-~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~~---~~~ 154 (461)
..+ ...++.....++... +++++|...|+++++.. |.++..+..+..++ ...++.++|++.|++.. ..+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 112 345666666555544 57999999999999875 44566666665553 45677788888887654 346
Q ss_pred HHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHH
Q 012539 155 VYTWTSVIGGLAM----NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHY 229 (461)
Q Consensus 155 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~ 229 (461)
..++..+...+.. .|++++|.+.+++..... +.+...+..+...+...|++++|...+..+.+. .| +..++
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~ 284 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY---IPNNAYLH 284 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh---CCChHHHH
Confidence 6777777666554 467889999999988753 445778888999999999999999999998753 44 45677
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcc
Q 012539 230 GCLVDLYGRA-------------------GRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELE 288 (461)
Q Consensus 230 ~~li~~~~~~-------------------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 288 (461)
..+...|... +.+++|...+++. ...| +..++..+...+...|++++|...|+++.+..
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 7776666432 2356677777666 2334 44578888888999999999999999999988
Q ss_pred CCCcc---hHHHHHHH-HhhcCChhHHHHHHHHHHhC
Q 012539 289 TKNHG---AYVLLSNI-YAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 289 p~~~~---~~~~l~~~-~~~~g~~~~a~~~~~~m~~~ 321 (461)
|++.. .+..+... +...|++++|+..+++..+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 77543 23344433 45789999999999988764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-13 Score=121.14 Aligned_cols=198 Identities=12% Similarity=0.074 Sum_probs=155.8
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012539 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198 (461)
Q Consensus 122 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 198 (461)
.....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3456677788889999999999999998764 467899999999999999999999999998863 346788888999
Q ss_pred HHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 012539 199 GCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEM 276 (461)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 276 (461)
.+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|...++++ ...| +...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998764 2345778899999999999999999999887 2233 56788888899999999999
Q ss_pred HHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 277 GELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 277 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
|...++++.+..|.+..++..++.+|...|++++|.+.+++..+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999997753
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-13 Score=131.10 Aligned_cols=290 Identities=14% Similarity=0.035 Sum_probs=220.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-C----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCc-
Q 012539 20 EPDVVCQTAMISACAKCGDVDLARKMFDEMPE--R-D----PIAWNAMLAGYAQCGKSREALHLFHLMQIH----DVKL- 87 (461)
Q Consensus 20 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p- 87 (461)
++....+..+...+.+.|++++|...|++..+ | + ..+|..+...|...|++++|+..|++.... +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34566777888899999999999999998653 2 3 357889999999999999999999987542 2222
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC----C-CchHHHHHHHHHHHhcCC--------------------HHH
Q 012539 88 NEVSMVSVLSACTHLGALDQGRWAHVYIERNRL----K-MTVTLGTALVDMYSKCGN--------------------MNK 142 (461)
Q Consensus 88 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~li~~~~~~g~--------------------~~~ 142 (461)
...++..+...+...|++++|...+.++.+... + ....++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 245677888889999999999999988775321 1 124477888999999999 999
Q ss_pred HHHHHHhcCC-----C----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhhcCcHHH
Q 012539 143 AMDFFWGMKE-----R----NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV-RPN----EVTFVSVLRGCCVVGLVEE 208 (461)
Q Consensus 143 A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~ 208 (461)
|...|++... . ...+|..+...|...|++++|++.|++..+... .++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 9988887542 1 235788889999999999999999999865311 122 3367788889999999999
Q ss_pred HHHHHHHhhhhcCCccC----hhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChHH
Q 012539 209 GREHFDSMRREYGIEPW----LEHYGCLVDLYGRAGRLDEALDVINKM----PMKPH----AGAWGALLNACRMYKNTEM 276 (461)
Q Consensus 209 a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~~~~~~ 276 (461)
|...++...+...-.++ ..++..+...|...|++++|...+++. +..++ ..++..+...+...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999987653211111 567888999999999999999998876 11122 4477788888999999999
Q ss_pred HHHHHHHHhhccCC------CcchHHHHHHHHhhcCChh
Q 012539 277 GELASRKLVELETK------NHGAYVLLSNIYAESKNWD 309 (461)
Q Consensus 277 a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~ 309 (461)
|...++++.++.+. ...++..+..+|...|+..
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 99999998876322 2446677777777776653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.54 E-value=9.7e-14 Score=135.23 Aligned_cols=305 Identities=12% Similarity=0.055 Sum_probs=203.1
Q ss_pred cccCCchHHHHHHhcCCC-CCHHHHHHHHHHHHHcCCH---HHHHHHHhhCCCCChhHHHHHHHHHHHcC-----ChHHH
Q 012539 3 AELGCLGYCQKVFDGIHE-PDVVCQTAMISACAKCGDV---DLARKMFDEMPERDPIAWNAMLAGYAQCG-----KSREA 73 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~li~~~~~~g-----~~~~A 73 (461)
.+.|++++|.+.|++..+ .++..+..|...|...|+. ++|...|++..+.++..+..|...+...| ++++|
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A 93 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEA 93 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHH
Confidence 456889999999987643 3555666777778888888 89999999887778888888888666665 78899
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHH---HHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC----CHHHHHHH
Q 012539 74 LHLFHLMQIHDVKLNEVSMVSVLSACTHLGALD---QGRWAHVYIERNRLKMTVTLGTALVDMYSKCG----NMNKAMDF 146 (461)
Q Consensus 74 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~ 146 (461)
+..|++..+.|.. + .+..+...|...+..+ .+.+.+......| ++.....|..+|...+ +.+++..+
T Consensus 94 ~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 94 ESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred HHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 9999999887643 2 5555666665544433 3444444444444 3445566788888777 45556667
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc----CcHHHHHHHHHHhhhh
Q 012539 147 FWGMKERNVYTWTSVIGGLAMNG---AGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV----GLVEEGREHFDSMRRE 219 (461)
Q Consensus 147 ~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~ 219 (461)
++.....++.++..|...|...| +.++|++.|++..+.| .++...+..|...|... ++.++|..+|+...
T Consensus 168 ~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-- 244 (452)
T 3e4b_A 168 CKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-- 244 (452)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--
Confidence 77777767778888998998899 8899999999988876 44555555666666554 68899999998774
Q ss_pred cCCccChhHHHHHHHH-H--HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHhhccCCC
Q 012539 220 YGIEPWLEHYGCLVDL-Y--GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYK-----NTEMGELASRKLVELETKN 291 (461)
Q Consensus 220 ~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~p~~ 291 (461)
+-++..+..|..+ | ...|++++|...|++.-...+...+..|...|. .| ++++|...|++.. |.+
T Consensus 245 ---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~ 317 (452)
T 3e4b_A 245 ---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GRE 317 (452)
T ss_dssp ---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTC
T ss_pred ---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCC
Confidence 3356667777776 4 568899999999988732346667777777766 55 8999999999888 777
Q ss_pred cchHHHHHHHHhh----cCChhHHHHHHHHHHhCCC
Q 012539 292 HGAYVLLSNIYAE----SKNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 292 ~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 323 (461)
+.++..|..+|.. ..++++|...+++..+.|.
T Consensus 318 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 318 VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 8888888888877 3488999999998887665
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=5.6e-13 Score=126.23 Aligned_cols=226 Identities=11% Similarity=0.036 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC-HHHHHHHHHhcCC---CCHHHHHHHHHH
Q 012539 89 EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN-MNKAMDFFWGMKE---RNVYTWTSVIGG 164 (461)
Q Consensus 89 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~ 164 (461)
...|..+..++...|++++|...+.++++.. +.+..+|+.+..++.+.|+ +++|+..|++... .+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3567788888899999999999999999986 5678889999999999997 9999999998873 478899999999
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHh-cCCH
Q 012539 165 LAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGR-AGRL 242 (461)
Q Consensus 165 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~-~g~~ 242 (461)
+...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++++++. .| +...|..+..+|.+ .|..
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999853 335788999999999999999999999999863 45 57889999999999 6665
Q ss_pred HHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcC-------
Q 012539 243 DEA-----LDVINKM-PMKP-HAGAWGALLNACRMYK--NTEMGELASRKLVELETKNHGAYVLLSNIYAESK------- 306 (461)
Q Consensus 243 ~~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 306 (461)
++| +..|++. ...| +...|+.+...+...| +.++|...++++ +.+|+++..+..|+.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 4667666 4455 4568888888888887 689999999998 889999999999999999874
Q ss_pred --ChhHHHHHHHHH-Hh
Q 012539 307 --NWDRVINVRQIM-KA 320 (461)
Q Consensus 307 --~~~~a~~~~~~m-~~ 320 (461)
.+++|.++++++ .+
T Consensus 331 ~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 331 EDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 358999999998 54
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.8e-13 Score=130.20 Aligned_cols=266 Identities=12% Similarity=0.041 Sum_probs=206.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC--C-Ch----hHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCc-CHHHH
Q 012539 25 CQTAMISACAKCGDVDLARKMFDEMPE--R-DP----IAWNAMLAGYAQCGKSREALHLFHLMQIH----DVKL-NEVSM 92 (461)
Q Consensus 25 ~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~ 92 (461)
.+..+...+...|++++|...|++..+ + +. ..|..+...|...|++++|+..|++..+. +-.| ...++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 345567788999999999999998653 2 33 47889999999999999999999988653 1122 34578
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcC-----CCCchHHHHHHHHHHHhcCC-----------------HHHHHHHHHhc
Q 012539 93 VSVLSACTHLGALDQGRWAHVYIERNR-----LKMTVTLGTALVDMYSKCGN-----------------MNKAMDFFWGM 150 (461)
Q Consensus 93 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~~ 150 (461)
..+...+...|++++|...+.++.+.. .+....++..+...|...|+ +++|...|++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 888889999999999999999887641 12335577889999999999 99999988876
Q ss_pred CC-----C----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhhcCcHHHHHHHHHHh
Q 012539 151 KE-----R----NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV-RPN----EVTFVSVLRGCCVVGLVEEGREHFDSM 216 (461)
Q Consensus 151 ~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~ 216 (461)
.+ . ...+|..+...|...|++++|++.|++..+... .++ ..++..+...+...|++++|...++..
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 42 1 235788899999999999999999999866311 112 236778888999999999999999987
Q ss_pred hhhcCCcc----ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 012539 217 RREYGIEP----WLEHYGCLVDLYGRAGRLDEALDVINKM-PM---KPH----AGAWGALLNACRMYKNTEMGELASRKL 284 (461)
Q Consensus 217 ~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~ 284 (461)
.....-.. ...++..+...|...|++++|...+++. .. .++ ..++..+...+...|++++|...++++
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 75321111 1567888999999999999999999877 11 112 337777888899999999999999999
Q ss_pred hhccCC
Q 012539 285 VELETK 290 (461)
Q Consensus 285 ~~~~p~ 290 (461)
.++.+.
T Consensus 370 l~~~~~ 375 (411)
T 4a1s_A 370 LQLAXX 375 (411)
T ss_dssp HHHCCH
T ss_pred HHHHhh
Confidence 887653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.8e-13 Score=131.89 Aligned_cols=208 Identities=7% Similarity=-0.077 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH-HHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 012539 105 LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM-NKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSL 180 (461)
Q Consensus 105 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 180 (461)
++.+.+.+....... +.+...+..+...|...|++ ++|++.|++..+ .+..+|..+...|.+.|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455556666555443 45677788888888889999 999998887753 3578899999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHhhc---------CcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhc--------CCH
Q 012539 181 MKQAGVRPNEVTFVSVLRGCCVV---------GLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRA--------GRL 242 (461)
Q Consensus 181 m~~~g~~p~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~--------g~~ 242 (461)
..+. .|+...+..+...+... |++++|...|++..+. .| +...|..+..+|... |++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 8874 57778888888888888 9999999999988753 44 477888899999888 899
Q ss_pred HHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHH
Q 012539 243 DEALDVINKM-PMKP----HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQI 317 (461)
Q Consensus 243 ~~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 317 (461)
++|...|++. ...| +...|..+...+...|++++|...++++.+++|++..++..+..++...|++++|.+.+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999887 3345 6678999999999999999999999999999999999999999999999999999876544
Q ss_pred H
Q 012539 318 M 318 (461)
Q Consensus 318 m 318 (461)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-12 Score=120.61 Aligned_cols=267 Identities=13% Similarity=0.035 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-C----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCc-CHHH
Q 012539 24 VCQTAMISACAKCGDVDLARKMFDEMPE--R-D----PIAWNAMLAGYAQCGKSREALHLFHLMQIH----DVKL-NEVS 91 (461)
Q Consensus 24 ~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t 91 (461)
..+......+...|++++|...|++..+ | + ...|..+...|...|++++|++.+++.... +..| ...+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3455566778889999999999987642 2 3 357888889999999999999999887542 1122 2456
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCC-C----chHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 012539 92 MVSVLSACTHLGALDQGRWAHVYIERNRLK-M----TVTLGTALVDMYSKCGN--------------------MNKAMDF 146 (461)
Q Consensus 92 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~--------------------~~~A~~~ 146 (461)
+..+...+...|++++|...+.+..+.... + ...++..+...|...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 777888888999999999998887653211 1 13477788889999999 8999888
Q ss_pred HHhcCC-----C----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhhcCcHHHHHHH
Q 012539 147 FWGMKE-----R----NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV-RPN----EVTFVSVLRGCCVVGLVEEGREH 212 (461)
Q Consensus 147 ~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~ 212 (461)
+++... . ...++..+...|...|++++|.+.+++..+... .++ ..++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 877542 1 235788888899999999999999998865310 111 33677788888999999999999
Q ss_pred HHHhhhhcCCccC----hhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHH
Q 012539 213 FDSMRREYGIEPW----LEHYGCLVDLYGRAGRLDEALDVINKM----PMKPH----AGAWGALLNACRMYKNTEMGELA 280 (461)
Q Consensus 213 ~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~ 280 (461)
++...+...-.++ ..++..+...|...|++++|...+++. +..++ ..++..+...+...|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 9887653211111 557788889999999999999998876 11122 33677788889999999999999
Q ss_pred HHHHhhccCC
Q 012539 281 SRKLVELETK 290 (461)
Q Consensus 281 ~~~~~~~~p~ 290 (461)
++++.++.+.
T Consensus 326 ~~~a~~~~~~ 335 (338)
T 3ro2_A 326 AEKHLEISRE 335 (338)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHHh
Confidence 9999887654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-11 Score=112.33 Aligned_cols=218 Identities=8% Similarity=0.013 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHh-------ccCCH-------HHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 012539 71 REALHLFHLMQIHDVKLNEVSMVSVLSACT-------HLGAL-------DQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136 (461)
Q Consensus 71 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 136 (461)
++|+.+|++..... +-+...|...+..+. ..|+. ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 46666666666532 224445555555543 23554 6777777777763224455567777777777
Q ss_pred cCCHHHHHHHHHhcCC--C-CHH-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-hcCcHHHHHH
Q 012539 137 CGNMNKAMDFFWGMKE--R-NVY-TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCC-VVGLVEEGRE 211 (461)
Q Consensus 137 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~~ 211 (461)
.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777776653 2 233 67777777777777788888887777642 223444443332222 2578888888
Q ss_pred HHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 012539 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-P---MKP--HAGAWGALLNACRMYKNTEMGELASRKLV 285 (461)
Q Consensus 212 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 285 (461)
+|+..++.. +.++..|..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 887776531 224667777777777788888888877776 1 233 34477777777777888888888888888
Q ss_pred hccCCCc
Q 012539 286 ELETKNH 292 (461)
Q Consensus 286 ~~~p~~~ 292 (461)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 8777654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.47 E-value=7.6e-12 Score=105.82 Aligned_cols=165 Identities=13% Similarity=0.078 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHH
Q 012539 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV 233 (461)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 233 (461)
+...|..+...|.+.|++++|++.|++..+.. +-+..++..+..++...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 34455555666666666666666666655531 123455555555666666666666666655432 122344555555
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHH
Q 012539 234 DLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311 (461)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 311 (461)
..+...++++.|...+.+. ...| +...+..+...+...|++++|+..++++.+.+|.++.+|..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 6666666666666666555 2223 3456666666777777777777777777777887777778888888888888888
Q ss_pred HHHHHHHHhC
Q 012539 312 INVRQIMKAK 321 (461)
Q Consensus 312 ~~~~~~m~~~ 321 (461)
.+.+++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 8887777654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-11 Score=112.71 Aligned_cols=227 Identities=10% Similarity=0.020 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHc----CCH----HHHHHHHhhCCC---CChhHHHHHHHHHHH-------cCCh-------HHHHHHH
Q 012539 23 VVCQTAMISACAKC----GDV----DLARKMFDEMPE---RDPIAWNAMLAGYAQ-------CGKS-------REALHLF 77 (461)
Q Consensus 23 ~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~---~~~~~~~~li~~~~~-------~g~~-------~~A~~~~ 77 (461)
...|...+..--+. ++. ++|..+|++... .++..|..++..+.. .|++ ++|..+|
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence 34566666654443 233 677788887654 367788888877763 4776 8899999
Q ss_pred HHHHHCCCCc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 012539 78 HLMQIHDVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVT-LGTALVDMYSKCGNMNKAMDFFWGMKE--- 152 (461)
Q Consensus 78 ~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~--- 152 (461)
++..+. +.| +...|..++..+...|++++|..+|+++++.. +.+.. +|..++..+.+.|++++|..+|++..+
T Consensus 88 ~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 165 (308)
T 2ond_A 88 ERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 165 (308)
T ss_dssp HHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred HHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 988873 234 45578888888888899999999999988853 22343 788888888889999999999988764
Q ss_pred CCHHHHHHHHHHHH-hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc--ChhHH
Q 012539 153 RNVYTWTSVIGGLA-MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP--WLEHY 229 (461)
Q Consensus 153 ~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~ 229 (461)
.+...|...+.... ..|++++|.++|++..+.. +-+...+..++..+...|+.++|..+|++......++| ....|
T Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~ 244 (308)
T 2ond_A 166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244 (308)
T ss_dssp CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 23445544433322 3689999999999887742 33567788888888889999999999998876423455 35678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC
Q 012539 230 GCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
..++..+.+.|+.++|..+++++
T Consensus 245 ~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 245 ARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888899999999888876
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-12 Score=122.20 Aligned_cols=224 Identities=10% Similarity=-0.020 Sum_probs=113.4
Q ss_pred HHHHhccCCHHHHHHHHHHHHHc----CCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----HHHHHH
Q 012539 96 LSACTHLGALDQGRWAHVYIERN----RLKM-TVTLGTALVDMYSKCGNMNKAMDFFWGMKE-----RN-----VYTWTS 160 (461)
Q Consensus 96 l~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~ 160 (461)
...+...|++++|...+.++.+. +-++ ...++..+...|...|++++|...|++..+ ++ ..+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34445555666666655555542 1111 234455555566666666665555554431 11 234555
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhc---CCcc-ChhHHHH
Q 012539 161 VIGGLAMNGAGEKSLELFSLMKQAGV-RPN----EVTFVSVLRGCCVVGLVEEGREHFDSMRREY---GIEP-WLEHYGC 231 (461)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~ 231 (461)
+...|...|++++|++.|++..+... .++ ..++..+...|...|++++|...+++..+-. +..| ...++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 55666666666666666655543210 011 1345555556666666666666665554310 1112 2445556
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-C---CCCCH---HHHHHHHHHHHhcCC---hHHHHHHHHHHhhccCCCcchHHHHHHH
Q 012539 232 LVDLYGRAGRLDEALDVINKM-P---MKPHA---GAWGALLNACRMYKN---TEMGELASRKLVELETKNHGAYVLLSNI 301 (461)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~-~---~~p~~---~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 301 (461)
+...|.+.|++++|...+++. . ..++. ..+..+...+...|+ .++|..++++. ...|.....+..++..
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHH
Confidence 666666666666666665554 0 00111 123334444555555 45555555444 1222233456667777
Q ss_pred HhhcCChhHHHHHHHHHHh
Q 012539 302 YAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~ 320 (461)
|...|++++|.+.+++..+
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 7777777777777766654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.3e-12 Score=121.56 Aligned_cols=308 Identities=14% Similarity=0.003 Sum_probs=208.6
Q ss_pred ccccCCc---hHHHHHHhcCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHhhCCCC-ChhHHHHHHHHHHHcCChHH
Q 012539 2 YAELGCL---GYCQKVFDGIHEPDVVCQTAMISACAKCG-----DVDLARKMFDEMPER-DPIAWNAMLAGYAQCGKSRE 72 (461)
Q Consensus 2 y~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~~ 72 (461)
|...|+. ++|...|++..+.++..+..|...+...| ++++|...|++..++ ++..+..|...|...+...+
T Consensus 45 y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~ 124 (452)
T 3e4b_A 45 QVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFP 124 (452)
T ss_dssp --------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCT
T ss_pred HHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCC
Confidence 4556777 89999999987777778888888666655 789999999987654 56688899999988776444
Q ss_pred ---HHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC---CHHHHHHH
Q 012539 73 ---ALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG---NMNKAMDF 146 (461)
Q Consensus 73 ---A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~ 146 (461)
+.+.+.+....| +......+...+...+.++.+......+.+.....++..+..|..+|.+.| +.++|.+.
T Consensus 125 ~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~ 201 (452)
T 3e4b_A 125 NVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQ 201 (452)
T ss_dssp TCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHH
Confidence 455555555444 345566667777777744444333332322222333447778999999999 99999999
Q ss_pred HHhcCC---CCHHHHHHHHHHHHhC----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--hhcCcHHHHHHHHHHh
Q 012539 147 FWGMKE---RNVYTWTSVIGGLAMN----GAGEKSLELFSLMKQAGVRPNEVTFVSVLRG-C--CVVGLVEEGREHFDSM 216 (461)
Q Consensus 147 ~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~ 216 (461)
|+...+ ++...+..|...|... +++++|++.|++.. .| +...+..|... + ...++.++|..+|++.
T Consensus 202 ~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~A 277 (452)
T 3e4b_A 202 MEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNG 277 (452)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 997763 4555557788887654 68999999999987 33 44556666665 3 4689999999999998
Q ss_pred hhhcCCccChhHHHHHHHHHHhcC-----CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhc
Q 012539 217 RREYGIEPWLEHYGCLVDLYGRAG-----RLDEALDVINKMPMKPHAGAWGALLNACRM----YKNTEMGELASRKLVEL 287 (461)
Q Consensus 217 ~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~ 287 (461)
.+. | ++..+..|..+|. .| ++++|...|++.. ..++..+..|...|.. ..+.++|...|++..+.
T Consensus 278 a~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 278 RAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 753 4 5677778888887 55 9999999999998 6677777777777665 34899999999998875
Q ss_pred cCCCcchHHHHHHHHhh----cCChhHHHHHHHHHHhCCCc
Q 012539 288 ETKNHGAYVLLSNIYAE----SKNWDRVINVRQIMKAKGVK 324 (461)
Q Consensus 288 ~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~ 324 (461)
+ ++.+...|..+|.. ..+.++|...++...+.|..
T Consensus 352 g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 352 G--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp T--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred C--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 4 45688889999875 46899999999999887753
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=5e-13 Score=122.88 Aligned_cols=128 Identities=9% Similarity=-0.033 Sum_probs=66.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHc------C-CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------
Q 012539 91 SMVSVLSACTHLGALDQGRWAHVYIERN------R-LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE----------- 152 (461)
Q Consensus 91 t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------- 152 (461)
++..+...+...|++++|...+.++++. + .+....++..+...|...|++++|...|++..+
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3344444444444444444444444332 1 112233445555555555555555555554431
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhh
Q 012539 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA------GVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (461)
....+|..+...|...|++++|++.|+++.+. +..|+ ..++..+...+...|++++|...++.+.+
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 02234556666666666666666666666543 11222 33455666666677777777777766654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.9e-12 Score=120.50 Aligned_cols=287 Identities=7% Similarity=-0.043 Sum_probs=208.8
Q ss_pred cccCCchHHHHHHhcCC--------CCCHHHHHHHHHHHH--HcCCHHHHH-----------HHHhhCCCC--ChhH---
Q 012539 3 AELGCLGYCQKVFDGIH--------EPDVVCQTAMISACA--KCGDVDLAR-----------KMFDEMPER--DPIA--- 56 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~--~~g~~~~A~-----------~~~~~m~~~--~~~~--- 56 (461)
.+.+++++|..+++.+. .++...|-.++..-. -.++++.+. +.++.+... +...
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~ 102 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLE 102 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHH
Confidence 46789999999886642 234444455544311 223333333 555544321 1111
Q ss_pred ---HHHHHHHHHHcCChHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC------CC
Q 012539 57 ---WNAMLAGYAQCGKSREALHLFHLMQIH----DVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRL------KM 122 (461)
Q Consensus 57 ---~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~ 122 (461)
|......+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+.+..+... +.
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 223566788999999999999998763 1122 335788888999999999999999999886421 11
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCC-
Q 012539 123 TVTLGTALVDMYSKCGNMNKAMDFFWGMKE-----RN----VYTWTSVIGGLAMNGAGEKSLELFSLMKQA----GVRP- 188 (461)
Q Consensus 123 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p- 188 (461)
...+++.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|++.|++..+. +..|
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 245778899999999999999999988763 22 247888999999999999999999998762 3323
Q ss_pred CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC---hhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCHH-HH
Q 012539 189 NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW---LEHYGCLVDLYGRAGR---LDEALDVINKMPMKPHAG-AW 261 (461)
Q Consensus 189 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~~-~~ 261 (461)
...++..+...+...|++++|...++...+...-.++ ...+..+...|...|+ +++|+.++++.+..|+.. .+
T Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~ 342 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 3667888999999999999999999988753211112 3346678888999999 999999999986555444 66
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhccC
Q 012539 262 GALLNACRMYKNTEMGELASRKLVELET 289 (461)
Q Consensus 262 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p 289 (461)
..+...|...|++++|...++++.++..
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 7777889999999999999999987543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=5e-13 Score=122.91 Aligned_cols=229 Identities=9% Similarity=0.018 Sum_probs=153.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHc-------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----
Q 012539 92 MVSVLSACTHLGALDQGRWAHVYIERN-------RLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-------R---- 153 (461)
Q Consensus 92 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~---- 153 (461)
+..+...+...|++++|...+.++.+. ..+....++..+...|...|++++|...|++... +
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 333334444444444444444444331 2233456778899999999999999999987652 1
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhc-----C
Q 012539 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQA------GVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREY-----G 221 (461)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~ 221 (461)
...+|..+...|...|++++|++.|++..+. +..|+ ...+..+...+...|++++|..+++.+.+.. +
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3467888999999999999999999998764 22233 4567788889999999999999999887531 1
Q ss_pred Ccc-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC----------CCCCH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 012539 222 IEP-WLEHYGCLVDLYGRAGRLDEALDVINKMP----------MKPHA-------GAWGALLNACRMYKNTEMGELASRK 283 (461)
Q Consensus 222 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~ 283 (461)
..| ....+..+...|...|++++|...++++- ..+.. ..+..+...+...+.+.++...++.
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 269 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKA 269 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-----
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhh
Confidence 122 35678889999999999999999998761 11111 1222233334555666677777777
Q ss_pred HhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 284 LVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 284 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
.....|....++..++.+|.+.|++++|.+.+++..+
T Consensus 270 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 270 CKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777788888999999999999999999999998765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-11 Score=103.75 Aligned_cols=160 Identities=12% Similarity=0.060 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 012539 22 DVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA 98 (461)
Q Consensus 22 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 98 (461)
++.+|..|...|.+.|++++|+..|++..+ .++.+|..+...|.+.|++++|+..+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 344555555555555555555555554332 234455555555555555555555555554432 1233344444444
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHH
Q 012539 99 CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSL 175 (461)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 175 (461)
+...++++.+...+....+.. +.+..++..+...|.+.|++++|++.|++..+ .+..+|..+..+|.+.|++++|+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 455555555555555554443 33344444455555555555555555544431 23444555555555555555555
Q ss_pred HHHHHHHH
Q 012539 176 ELFSLMKQ 183 (461)
Q Consensus 176 ~~~~~m~~ 183 (461)
+.|++..+
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555444
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.40 E-value=5.1e-10 Score=105.93 Aligned_cols=261 Identities=11% Similarity=-0.004 Sum_probs=149.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCcCHH----HHHHHHHHHhccCCHHHHHHHHHHHHHcCC---CC--chHHHHHH
Q 012539 60 MLAGYAQCGKSREALHLFHLMQIHDVKLNEV----SMVSVLSACTHLGALDQGRWAHVYIERNRL---KM--TVTLGTAL 130 (461)
Q Consensus 60 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l 130 (461)
+...+...|++++|...+++........+.. ++..+...+...|++++|...+.+...... .+ ...+...+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344455566666666666555432111221 333444455556666666666655543210 11 11223455
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC----------C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC--C--CHHHHHH
Q 012539 131 VDMYSKCGNMNKAMDFFWGMKE----------R-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR--P--NEVTFVS 195 (461)
Q Consensus 131 i~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~~~~~ 195 (461)
...+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 6666667777777666665432 1 1234555666677777777777777776553211 1 1345556
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHH-----HHHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHHHHHH
Q 012539 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYG-----CLVDLYGRAGRLDEALDVINKMP-MKPH-----AGAWGAL 264 (461)
Q Consensus 196 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l 264 (461)
+...+...|++++|...++.......-......+. ..+..+...|++++|...+++.. ..|. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 66677777888888777777654211111111111 23344667788888888887762 1221 1245566
Q ss_pred HHHHHhcCChHHHHHHHHHHhhccCC-----C-cchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 265 LNACRMYKNTEMGELASRKLVELETK-----N-HGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 265 l~~~~~~~~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
...+...|++++|...++++.+..+. + ..++..+..++...|+.++|...+++...
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66678888888888888887654322 1 13566778888888999998888887754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=3e-11 Score=114.84 Aligned_cols=299 Identities=9% Similarity=-0.015 Sum_probs=201.6
Q ss_pred CCHHHHHHHHHHH--HHcCCHHHHHHHHhhCCC--------CChhHHHHHHHH--HHHcCChHHHH---------HHHHH
Q 012539 21 PDVVCQTAMISAC--AKCGDVDLARKMFDEMPE--------RDPIAWNAMLAG--YAQCGKSREAL---------HLFHL 79 (461)
Q Consensus 21 ~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~--~~~~g~~~~A~---------~~~~~ 79 (461)
|+..+-+.|-..| .+.+++++|..+++++.+ +++..|..|+.. ..-.+....+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 5666777777777 789999999998886432 234444444432 11112222222 55555
Q ss_pred HHHCCCCcCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--C---CchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 012539 80 MQIHDVKLNE----VSMVSVLSACTHLGALDQGRWAHVYIERNRL--K---MTVTLGTALVDMYSKCGNMNKAMDFFWGM 150 (461)
Q Consensus 80 m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 150 (461)
+.....+.+. ..+......+...|++++|...+.++.+... + ....++..+...|...|+++.|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 5432111111 1223344556788999999999999886421 1 13457778899999999999998888776
Q ss_pred CC-----CC-----HHHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 012539 151 KE-----RN-----VYTWTSVIGGLAMNGAGEKSLELFSLMKQA----GVRP-NEVTFVSVLRGCCVVGLVEEGREHFDS 215 (461)
Q Consensus 151 ~~-----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 215 (461)
.+ ++ ..+++.+...|...|++++|++.|++..+. +..+ ...++..+...+...|++++|...+++
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 42 12 357888899999999999999999988652 1111 134677788889999999999999998
Q ss_pred hhhhc---CCccChhHHHHHHHHHHhcCCHHHHHHHHHhC----CC--CCCH-HHHHHHHHHHHhcCC---hHHHHHHHH
Q 012539 216 MRREY---GIEPWLEHYGCLVDLYGRAGRLDEALDVINKM----PM--KPHA-GAWGALLNACRMYKN---TEMGELASR 282 (461)
Q Consensus 216 ~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~--~p~~-~~~~~ll~~~~~~~~---~~~a~~~~~ 282 (461)
..+-. +.+....++..+...|.+.|++++|...+++. +. .|.. ..+..+...+...++ ..+|...++
T Consensus 248 al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 248 AAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 87511 22223667888899999999999999999876 21 2222 244445455667777 667776666
Q ss_pred HHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 283 KLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 283 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
+. ...|.....+..++..|...|++++|...+++..+
T Consensus 328 ~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 328 KK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 62 22233445777899999999999999999988754
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-11 Score=120.59 Aligned_cols=207 Identities=10% Similarity=-0.018 Sum_probs=174.4
Q ss_pred CHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHH
Q 012539 38 DVDLARKMFDEMP---ERDPIAWNAMLAGYAQCGKS-REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHV 113 (461)
Q Consensus 38 ~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 113 (461)
.+++|+..++... ..+...|..+...|...|++ ++|++.|++..+.. +-+..+|..+..++...|++++|...++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4667777776543 23678899999999999999 99999999998854 2357789999999999999999999999
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhc---------CCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhC--------CChHH
Q 012539 114 YIERNRLKMTVTLGTALVDMYSKC---------GNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMN--------GAGEK 173 (461)
Q Consensus 114 ~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~--------g~~~~ 173 (461)
++++.. |+...+..+...|... |++++|++.|++..+ .+...|..+..+|... |++++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 998865 5568888899999999 999999999998763 4678899999999988 99999
Q ss_pred HHHHHHHHHHcCCCC----CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHH
Q 012539 174 SLELFSLMKQAGVRP----NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDV 248 (461)
Q Consensus 174 A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 248 (461)
|++.|++..+. .| +...+..+..++...|++++|...|+...+. .| +...+..+..++...|++++|.+.
T Consensus 240 A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 240 ALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL---DPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999885 44 6888889999999999999999999998753 44 467788899999999999999988
Q ss_pred HHhC
Q 012539 249 INKM 252 (461)
Q Consensus 249 ~~~~ 252 (461)
+.++
T Consensus 315 ~~~~ 318 (474)
T 4abn_A 315 KGKT 318 (474)
T ss_dssp TTTC
T ss_pred hccc
Confidence 8776
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-11 Score=125.40 Aligned_cols=159 Identities=15% Similarity=0.174 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-hhHHHHHH
Q 012539 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHYGCLV 233 (461)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li 233 (461)
.+|+.|...|.+.|++++|++.|++..+. .|+ ..++..+..++.+.|++++|...|++.++ +.|+ ...|..+.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nLg 84 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 34444444555555555555555554442 232 44444455555555555555555554442 1332 44555555
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHH
Q 012539 234 DLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311 (461)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 311 (461)
.+|.+.|++++|++.|++. ...| +...|+.+...+...|++++|+..|+++++++|++..+|..|+.+|...|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 5555555555555555544 2233 2345666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHH
Q 012539 312 INVRQIMK 319 (461)
Q Consensus 312 ~~~~~~m~ 319 (461)
.+.+++..
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-10 Score=109.21 Aligned_cols=285 Identities=9% Similarity=0.038 Sum_probs=202.5
Q ss_pred cccCCchHHHHHHhcCC--------CCCHHHHHHHHHHHH--HcCCHHHHH---------HHHhhC---CCC-C-hh---
Q 012539 3 AELGCLGYCQKVFDGIH--------EPDVVCQTAMISACA--KCGDVDLAR---------KMFDEM---PER-D-PI--- 55 (461)
Q Consensus 3 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~--~~g~~~~A~---------~~~~~m---~~~-~-~~--- 55 (461)
.+.+++++|.++++.+. .+++..|-.|+..-. -.+.++.+. ..++.+ ..+ + ..
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~ 102 (378)
T 3q15_A 23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYY 102 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHH
Confidence 46788999999886532 234444555554311 111111111 344433 222 1 11
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CcC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-----C-Cch
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDV-KLN----EVSMVSVLSACTHLGALDQGRWAHVYIERNRL-----K-MTV 124 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~ 124 (461)
.|......+...|++++|+..|++..+.-. .++ ..++..+...+...|+++.|...+.+..+... + ...
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 334456677899999999999999876421 122 35778888999999999999999998875321 1 124
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCCHH
Q 012539 125 TLGTALVDMYSKCGNMNKAMDFFWGMKE-----RN----VYTWTSVIGGLAMNGAGEKSLELFSLMKQA----GVRPNEV 191 (461)
Q Consensus 125 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~ 191 (461)
.+++.+...|...|++++|.+.|++..+ ++ ..++..+...|...|++++|++.|++..+. +.+....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 5778899999999999999999987653 22 357888999999999999999999998761 2222367
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC---hhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCHH-HHHHH
Q 012539 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW---LEHYGCLVDLYGRAGR---LDEALDVINKMPMKPHAG-AWGAL 264 (461)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~~-~~~~l 264 (461)
++..+...+...|+.++|...++...+...-.++ ...+..+...|...|+ +++|+..+++.+..|+.. .+..+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~l 342 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 7888899999999999999999998764322222 3456667777888888 999999999876444444 56677
Q ss_pred HHHHHhcCChHHHHHHHHHHhhc
Q 012539 265 LNACRMYKNTEMGELASRKLVEL 287 (461)
Q Consensus 265 l~~~~~~~~~~~a~~~~~~~~~~ 287 (461)
...|...|++++|...++++.+.
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 77799999999999999998764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.32 E-value=7.5e-11 Score=99.14 Aligned_cols=162 Identities=9% Similarity=-0.088 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012539 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200 (461)
Q Consensus 124 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 200 (461)
...+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34556677777777788888777777663 355667777777777777777777777776642 23455555666666
Q ss_pred hhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 012539 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELA 280 (461)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 280 (461)
...|++++|...++.+.+. .+.+.. .+..+...+...|++++|...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~--------------------------------~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFN--------------------------------VRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHH--------------------------------HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHH--------------------------------HHHHHHHHHHHcCcHHHHHHH
Confidence 6666666666666665432 112233 444444445555555555555
Q ss_pred HHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 281 SRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 281 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
++++.+..|.++.++..++.+|...|++++|.+.+++..+
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555556666666666666665555544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.32 E-value=4e-10 Score=94.60 Aligned_cols=157 Identities=13% Similarity=0.052 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHh
Q 012539 24 VCQTAMISACAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACT 100 (461)
Q Consensus 24 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 100 (461)
..|..+...+...|++++|...|+++.+. +...|..+...+...|++++|+..++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 45666667777777777777777776542 45567777777777777777777777766542 224455555556666
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHH
Q 012539 101 HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLEL 177 (461)
Q Consensus 101 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 177 (461)
..|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|++..+ .+..+|..+...+...|++++|.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666666655543 33444444455555555555555555544331 2334444444444444444444444
Q ss_pred HHHHH
Q 012539 178 FSLMK 182 (461)
Q Consensus 178 ~~~m~ 182 (461)
+++..
T Consensus 167 ~~~~~ 171 (186)
T 3as5_A 167 FKKAN 171 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.1e-10 Score=100.54 Aligned_cols=203 Identities=7% Similarity=-0.026 Sum_probs=156.3
Q ss_pred cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHH
Q 012539 87 LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIG 163 (461)
Q Consensus 87 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 163 (461)
.|+..+......+...|++++|...+..+++...+++...+..+..+|.+.|++++|++.|++..+ .+..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 466888888999999999999999999999987546777777799999999999999999998763 35678999999
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC---hhHHHHH
Q 012539 164 GLAMNGAGEKSLELFSLMKQAGVRPN-E-------VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW---LEHYGCL 232 (461)
Q Consensus 164 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 232 (461)
.|...|++++|++.|++..+. .|+ . ..|..+...+...|++++|...|+.+++ +.|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999999885 343 4 4577777888889999999999998874 4554 5677778
Q ss_pred HHHHHhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHH
Q 012539 233 VDLYGRAGRL--DEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNI 301 (461)
Q Consensus 233 i~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 301 (461)
...|...|+. ++|..+ . ..+...+.... ....+.+++|...++++.++.|+++.+...+..+
T Consensus 160 ~~~~~~~~~~~~~~a~~~----~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPL----A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHHHHHHGGG----T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc----c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 8888766543 222221 1 22344444333 3445668999999999999999998766666544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.29 E-value=6e-10 Score=105.43 Aligned_cols=264 Identities=8% Similarity=-0.040 Sum_probs=188.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCC----CCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CcCH----HHH
Q 012539 26 QTAMISACAKCGDVDLARKMFDEMP----ERDP----IAWNAMLAGYAQCGKSREALHLFHLMQIHDV-KLNE----VSM 92 (461)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~~~~~m~----~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~----~t~ 92 (461)
...+...+...|++++|...+++.. ..+. .+++.+...+...|++++|...+++...... .++. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4445566778999999999987642 2232 2567788889999999999999998765211 1122 335
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHc----CCC--C-chHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C------CHHH
Q 012539 93 VSVLSACTHLGALDQGRWAHVYIERN----RLK--M-TVTLGTALVDMYSKCGNMNKAMDFFWGMKE--R------NVYT 157 (461)
Q Consensus 93 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~------~~~~ 157 (461)
..+...+...|++++|...+++..+. +.+ | ....+..+...|...|++++|...+++... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66777888999999999999988753 222 2 345667788899999999999999987642 1 2357
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHH-----HHHHHHhhcCcHHHHHHHHHHhhhhcCCccC---hhH
Q 012539 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFV-----SVLRGCCVVGLVEEGREHFDSMRREYGIEPW---LEH 228 (461)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~ 228 (461)
|..+...+...|++++|...+++.......++ ...+. ..+..+...|+.++|...+...... ...+. ...
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~ 255 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHH
Confidence 88888899999999999999999875422221 11121 2334477899999999999988642 11111 224
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhccCC
Q 012539 229 YGCLVDLYGRAGRLDEALDVINKM-------PMKPHAG-AWGALLNACRMYKNTEMGELASRKLVELETK 290 (461)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 290 (461)
+..+...+...|++++|...+++. +..++.. .+..+..++...|+.++|...+++..+..++
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 567788899999999999998876 1111222 5555666688999999999999999876543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.7e-10 Score=116.45 Aligned_cols=158 Identities=10% Similarity=0.031 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCc-CHHHHHHHHHH
Q 012539 23 VVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKL-NEVSMVSVLSA 98 (461)
Q Consensus 23 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~ 98 (461)
..+|+.|...|.+.|++++|+..|++..+ .+..+|+.|..+|.+.|++++|++.|++.++. .| +..+|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 34555555555555555555555555432 23445555555555555555555555555553 22 34455555555
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHH
Q 012539 99 CTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSL 175 (461)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 175 (461)
+...|++++|.+.++++++.. +.+...++.+..+|.+.|++++|++.|++..+ .+...|..+..+|...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 555555555555555555543 33444555555555555555555555554432 23445555555555555555555
Q ss_pred HHHHHHHH
Q 012539 176 ELFSLMKQ 183 (461)
Q Consensus 176 ~~~~~m~~ 183 (461)
+.+++..+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-10 Score=104.26 Aligned_cols=153 Identities=10% Similarity=-0.019 Sum_probs=87.0
Q ss_pred HcCChHHHHHHHHHHHH-------CCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc------CC-CCchHHHHHHH
Q 012539 66 QCGKSREALHLFHLMQI-------HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN------RL-KMTVTLGTALV 131 (461)
Q Consensus 66 ~~g~~~~A~~~~~~m~~-------~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li 131 (461)
..|++++|+..|++..+ ...+....++..+...+...|++++|...+.++++. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34566666666655543 111223456666777777777777777777776653 11 22345566667
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-------C----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCCC-HHHH
Q 012539 132 DMYSKCGNMNKAMDFFWGMKE-------R----NVYTWTSVIGGLAMNGAGEKSLELFSLMKQA------GVRPN-EVTF 193 (461)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~ 193 (461)
..|...|++++|...|++... + ...+|..+...|...|++++|+..|++..+. +-.|+ ..++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 777777777777766665432 1 1345556666666666666666666666543 11221 3345
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhhh
Q 012539 194 VSVLRGCCVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 194 ~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (461)
..+...+...|++++|..+++.+.+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555556666666666666655543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.4e-10 Score=99.17 Aligned_cols=188 Identities=10% Similarity=-0.020 Sum_probs=143.0
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 012539 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKE----RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSV 196 (461)
Q Consensus 122 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 196 (461)
.++..+..+...|.+.|++++|...|+...+ ++...|..+..++...|++++|++.|++..+. .|+ ...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 4567777888999999999999999987652 67777877889999999999999999998874 454 5677888
Q ss_pred HHHHhhcCcHHHHHHHHHHhhhhcCCccC-h-------hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHH
Q 012539 197 LRGCCVVGLVEEGREHFDSMRREYGIEPW-L-------EHYGCLVDLYGRAGRLDEALDVINKM-PMKPH---AGAWGAL 264 (461)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l 264 (461)
...+...|++++|...++...+. .|+ . ..|..+...+...|++++|...|++. ...|+ ...|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 88899999999999999988753 343 4 45777888888899999999999887 55666 3466666
Q ss_pred HHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 265 LNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 265 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
...+.. .+...++++..+.+.+...|..+. ....+.+++|...+++..+.
T Consensus 160 ~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 160 GVLFYN-----NGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 666643 345556777777766655554443 34556789999999988764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=5.5e-10 Score=101.99 Aligned_cols=135 Identities=10% Similarity=-0.019 Sum_probs=70.8
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHhccCCHHHHHHHH
Q 012539 38 DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH----DVKLN-EVSMVSVLSACTHLGALDQGRWAH 112 (461)
Q Consensus 38 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~ 112 (461)
++++|...|++. ...|...|++++|++.|++.... |-.++ ..+|+.+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366776666553 66777778888888877766542 21111 345666666666667777776666
Q ss_pred HHHHHcCC---CC--chHHHHHHHHHHHhc-CCHHHHHHHHHhcCC--C---C----HHHHHHHHHHHHhCCChHHHHHH
Q 012539 113 VYIERNRL---KM--TVTLGTALVDMYSKC-GNMNKAMDFFWGMKE--R---N----VYTWTSVIGGLAMNGAGEKSLEL 177 (461)
Q Consensus 113 ~~~~~~~~---~~--~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~--~---~----~~~~~~li~~~~~~g~~~~A~~~ 177 (461)
.+.++... .+ ...+++.+..+|... |++++|+..|++..+ | + ..+|..+...|.+.|++++|+..
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 66554210 00 022344445555553 555555555544331 0 0 12344444444444444455444
Q ss_pred HHHHHH
Q 012539 178 FSLMKQ 183 (461)
Q Consensus 178 ~~~m~~ 183 (461)
|++..+
T Consensus 181 ~~~al~ 186 (292)
T 1qqe_A 181 YSKLIK 186 (292)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-09 Score=98.43 Aligned_cols=130 Identities=11% Similarity=0.021 Sum_probs=98.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc------C-
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLFHLMQIH------DVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERN------R- 119 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~- 119 (461)
..+|..+...|...|++++|+..|++..+. +-.| ...++..+...+...|++++|...+.++.+. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 557888888888899999999888887753 2122 3457778888888888999998888887764 1
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------CHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 120 LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER-----------NVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 120 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
.+....++..+...|...|++++|...|++.... ...++..+...|...|++++|++.|++..+
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1234567778888888889998888888776531 245677888888888999999888888765
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-08 Score=93.36 Aligned_cols=209 Identities=10% Similarity=-0.041 Sum_probs=151.7
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCCc-hHHHHHHHHHHHhcCCHHHH
Q 012539 69 KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN----RLKMT-VTLGTALVDMYSKCGNMNKA 143 (461)
Q Consensus 69 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A 143 (461)
++++|...|++. ...+...|++++|...+.+.... +-++. ..+++.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488898888876 33567789999999999887753 32222 56788899999999999999
Q ss_pred HHHHHhcCC-----CC----HHHHHHHHHHHHhC-CChHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHhhcCcHHH
Q 012539 144 MDFFWGMKE-----RN----VYTWTSVIGGLAMN-GAGEKSLELFSLMKQAGVRP-N----EVTFVSVLRGCCVVGLVEE 208 (461)
Q Consensus 144 ~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p-~----~~~~~~ll~~~~~~g~~~~ 208 (461)
+..|++..+ .+ ..+|+.+...|... |++++|+..|++..+..... + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999887653 12 35788899999996 99999999999987631110 1 3567888889999999999
Q ss_pred HHHHHHHhhhhcCCccCh-----hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--hcCCh
Q 012539 209 GREHFDSMRREYGIEPWL-----EHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAG------AWGALLNACR--MYKNT 274 (461)
Q Consensus 209 a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~ll~~~~--~~~~~ 274 (461)
|...|+...+...-.+.. ..+..+..++...|++++|...+++. ...|+.. .+..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 999999887531111121 15677888899999999999999887 4444422 3444555554 45678
Q ss_pred HHHHHHHHHHhhccCCCc
Q 012539 275 EMGELASRKLVELETKNH 292 (461)
Q Consensus 275 ~~a~~~~~~~~~~~p~~~ 292 (461)
++|...|+++..++|...
T Consensus 257 ~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 257 SEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp HHHHHHHTTSSCCCHHHH
T ss_pred HHHHHHhccCCccHHHHH
Confidence 888888888887777654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-08 Score=91.96 Aligned_cols=138 Identities=8% Similarity=0.030 Sum_probs=62.6
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012539 108 GRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-----RNVYTWTSVIGGLAMNGAGEKSLELFSLMK 182 (461)
Q Consensus 108 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 182 (461)
+...+++....+ +++......+..+|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444333 23333334455555555666666555555422 133445555555555555555555555555
Q ss_pred HcCCCC-----CHHHHHHHHHHHh--hcC--cHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012539 183 QAGVRP-----NEVTFVSVLRGCC--VVG--LVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINK 251 (461)
Q Consensus 183 ~~g~~p-----~~~~~~~ll~~~~--~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (461)
+ ..| +..+...|+.++. ..| +..+|..+|+++... .|+...-..+..++.+.|++++|.+.++.
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4 234 2333333443321 122 555555555555332 22211222222245555555555555443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-08 Score=91.42 Aligned_cols=207 Identities=10% Similarity=0.000 Sum_probs=147.2
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC-HHH
Q 012539 121 KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--R-N---VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV-RPN-EVT 192 (461)
Q Consensus 121 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~ 192 (461)
+.+...+-.+...+.+.|++++|...|+.+.. | + ..++..+..+|.+.|++++|+..|++..+... .|. ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34556666788888899999999999998874 3 3 56788888899999999999999999887532 122 445
Q ss_pred HHHHHHHHhh--------cCcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 012539 193 FVSVLRGCCV--------VGLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGA 263 (461)
Q Consensus 193 ~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 263 (461)
+..+..++.. .|++++|...|+.+++. .|+ ......+.......+.+ ...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHH
Confidence 6667777777 88999999999888764 333 22222221111111111 112456
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhccCCCc---chHHHHHHHHhhc----------CChhHHHHHHHHHHhCCCccCCccc
Q 012539 264 LLNACRMYKNTEMGELASRKLVELETKNH---GAYVLLSNIYAES----------KNWDRVINVRQIMKAKGVKKLPGCS 330 (461)
Q Consensus 264 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~s 330 (461)
+...+...|++++|...++++.+..|+++ .++..++.+|... |++++|...+++..+..
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~-------- 225 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF-------- 225 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--------
Confidence 66778999999999999999999998854 4788888999876 89999999999987642
Q ss_pred EEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHc
Q 012539 331 VIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLA 368 (461)
Q Consensus 331 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~ 368 (461)
+.+|...++...+.++...+.+.
T Consensus 226 ---------------p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 226 ---------------PDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp ---------------TTCTHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCChHHHHHHHHHHHHHHHHHHh
Confidence 23455566777777777766543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.08 E-value=8.2e-09 Score=92.35 Aligned_cols=185 Identities=11% Similarity=0.019 Sum_probs=136.4
Q ss_pred cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C----CHHH
Q 012539 87 LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT---VTLGTALVDMYSKCGNMNKAMDFFWGMKE--R----NVYT 157 (461)
Q Consensus 87 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~~~ 157 (461)
.+...+......+...|++++|...+..+++.. |.+ ...+..+..+|.+.|++++|...|+.... | ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 356777888888999999999999999999875 333 66778899999999999999999998864 3 2457
Q ss_pred HHHHHHHHHh--------CCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhH
Q 012539 158 WTSVIGGLAM--------NGAGEKSLELFSLMKQAGVRPNE-VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEH 228 (461)
Q Consensus 158 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 228 (461)
+..+..++.. .|++++|+..|+++.+. .|+. .....+ ..+..+... -...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 8888889998 99999999999999885 3432 222111 111111110 0122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CChHHHHHHHHHHhhccCCCcc
Q 012539 229 YGCLVDLYGRAGRLDEALDVINKM-PMKPH----AGAWGALLNACRMY----------KNTEMGELASRKLVELETKNHG 293 (461)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~ 293 (461)
+..+...|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|...++++.+..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 456777888899999999888877 22233 33666666777655 8889999999999999998853
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-08 Score=80.71 Aligned_cols=126 Identities=16% Similarity=0.201 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 135 (461)
+|..+...+...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|...+..+.+.. +.+...+..+...|.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 46666677777777777777777766543 2345556666666666667777777766666554 334455555666666
Q ss_pred hcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 136 KCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 136 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
..|++++|.+.|+++.. .+...|..+...+.+.|++++|...|+++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666665542 2455566666666666666666666666554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-08 Score=92.10 Aligned_cols=175 Identities=10% Similarity=-0.047 Sum_probs=113.6
Q ss_pred HHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhh
Q 012539 143 AMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP-NEVTFVSVLRGCCVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 143 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (461)
|+..|++.. .++..++..+..++...|++++|++++.+....+..+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 566666554 2455555677777777888888888888775544322 345566667777788888888888887754
Q ss_pred hcCCcc-----ChhHHHHHHHH--HHhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-
Q 012539 219 EYGIEP-----WLEHYGCLVDL--YGRAG--RLDEALDVINKM-PMKPHAGAWGALLNACRMYKNTEMGELASRKLVEL- 287 (461)
Q Consensus 219 ~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~- 287 (461)
. .| +..+...|+.+ ....| ++.+|..+|+++ ...|+..+-..++.++.+.|++++|+..++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2 44 23444455544 22233 788888888877 32354333334444677778888888888776655
Q ss_pred ---------cCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 288 ---------ETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 288 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
+|+++.++..++......|+ +|.++++++++..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 46777777777777766776 7777777777643
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3.1e-08 Score=86.50 Aligned_cols=183 Identities=11% Similarity=-0.054 Sum_probs=124.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--HHHHH
Q 012539 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKE--RN----VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE--VTFVS 195 (461)
Q Consensus 124 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ 195 (461)
...+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|+++.+....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455577888889999999999998763 32 357888888999999999999999998875322111 23444
Q ss_pred HHHHHhh------------------cCcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 012539 196 VLRGCCV------------------VGLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256 (461)
Q Consensus 196 ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 256 (461)
+..++.. .|+.++|...|+.+++. .|+ ...+...... +.+....
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~~---------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHHH----------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHHH----------
Confidence 4444443 45667777777666543 232 2222211110 0000000
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCc---chHHHHHHHHhhcCChhHHHHHHHHHHhCCCc
Q 012539 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNH---GAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324 (461)
Q Consensus 257 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 324 (461)
......+...+...|++++|...++++.+..|+++ .++..+..+|.+.|++++|.+.++.+...+..
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112345568899999999999999999999875 56889999999999999999999999887654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.02 E-value=9.4e-09 Score=80.96 Aligned_cols=129 Identities=18% Similarity=0.224 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHH
Q 012539 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLY 236 (461)
Q Consensus 157 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 236 (461)
+|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .|
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~------------ 66 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DP------------ 66 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CT------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CC------------
Confidence 45555556666666666666666665432 223444455555555555555555555554432 11
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHH
Q 012539 237 GRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316 (461)
Q Consensus 237 ~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 316 (461)
.+...|..+...+...|++++|...++++.+..|.+..++..++.+|...|++++|.+.++
T Consensus 67 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 67 -------------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp -------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -------------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 2233445555555566666666666666666666666666666666666667766666666
Q ss_pred HHHh
Q 012539 317 IMKA 320 (461)
Q Consensus 317 ~m~~ 320 (461)
++.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.8e-09 Score=110.64 Aligned_cols=168 Identities=11% Similarity=-0.040 Sum_probs=136.4
Q ss_pred HhcCCHHHHHHHHHhcC-----------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 012539 135 SKCGNMNKAMDFFWGMK-----------ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203 (461)
Q Consensus 135 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 203 (461)
...|++++|++.|++.. ..+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67899999999998876 3466788888899999999999999999988752 23567788888888899
Q ss_pred CcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHH
Q 012539 204 GLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELA 280 (461)
Q Consensus 204 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 280 (461)
|++++|...|+++.+. .| +...+..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|...
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999988753 45 46788889999999999999 8888877 3345 456888888889999999999999
Q ss_pred HHHHhhccCCCcchHHHHHHHHhhcCC
Q 012539 281 SRKLVELETKNHGAYVLLSNIYAESKN 307 (461)
Q Consensus 281 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 307 (461)
++++.+++|.+..++..+..++...++
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999988889999998877665
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.5e-08 Score=85.89 Aligned_cols=130 Identities=14% Similarity=0.046 Sum_probs=65.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcC
Q 012539 129 ALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP-NEVTFVSVLRGCCVVG 204 (461)
Q Consensus 129 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g 204 (461)
.+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+. .| +..++..+..++...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHh
Confidence 355566666666666666665442 24556666666666666666666666666553 23 3445555555554433
Q ss_pred c--HHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 012539 205 L--VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGAWGA 263 (461)
Q Consensus 205 ~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 263 (461)
. .+.+...+.... ...|....+..+..++...|++++|...|++. ...|+......
T Consensus 137 ~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 195 (208)
T 3urz_A 137 EQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 2 223333333322 11121222233344455556666666666655 44555544433
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=3.3e-08 Score=89.83 Aligned_cols=175 Identities=9% Similarity=-0.068 Sum_probs=134.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhh
Q 012539 140 MNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP-NEVTFVSVLRGCCVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 140 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (461)
.+.....++.....+...+..+...+.+.|++++|+..|++..+. .| +...+..+...+...|+.++|...++.+..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 344455555555556667777888888899999999999998875 44 466777888888899999999999988864
Q ss_pred hcCCccChhHHHH-HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC--cc
Q 012539 219 EYGIEPWLEHYGC-LVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKN--HG 293 (461)
Q Consensus 219 ~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~ 293 (461)
. .|+...... ....+...++.++|...+++. ...| +...+..+...+...|++++|...++++.+.+|.+ ..
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 3 555433322 223366777788888887776 3345 55688888888999999999999999999999987 77
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHH
Q 012539 294 AYVLLSNIYAESKNWDRVINVRQIMK 319 (461)
Q Consensus 294 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (461)
++..|+.+|...|+.++|...+++-.
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 89999999999999999988887653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.1e-08 Score=85.31 Aligned_cols=154 Identities=10% Similarity=-0.025 Sum_probs=76.2
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCC---ChhHHHH----------------HHHHHHHcCChHHHHHHHHHHHHCCCCcC
Q 012539 28 AMISACAKCGDVDLARKMFDEMPER---DPIAWNA----------------MLAGYAQCGKSREALHLFHLMQIHDVKLN 88 (461)
Q Consensus 28 ~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 88 (461)
.....+.+.|++++|+..|++..+. ++..|.. +...|.+.|++++|+..|++..+.. +-+
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 87 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNN 87 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCC
Confidence 3344555666666666666665432 2334444 5555566666666666666555532 124
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC--HHHHHHHHHhcCCCCHH--HHHHHHHH
Q 012539 89 EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN--MNKAMDFFWGMKERNVY--TWTSVIGG 164 (461)
Q Consensus 89 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~--~~~~li~~ 164 (461)
...+..+..++...|++++|...++++++.. |.+..++..+...|...|+ .+.+...|+....++.. .|..+..+
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~ 166 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLS 166 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 4455555555555566666666665555543 3344455555555544332 23344444444444332 22223334
Q ss_pred HHhCCChHHHHHHHHHHHH
Q 012539 165 LAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 165 ~~~~g~~~~A~~~~~~m~~ 183 (461)
+...|++++|+..|++..+
T Consensus 167 ~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 167 KLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHTHHHHHHHHHHHTT
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 4444555555555555544
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.94 E-value=7.4e-07 Score=90.11 Aligned_cols=199 Identities=7% Similarity=-0.076 Sum_probs=117.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHH-HHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC---------CCCC
Q 012539 123 TVTLGTALVDMYSKCGNMNKAM-DFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAG---------VRPN 189 (461)
Q Consensus 123 ~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~ 189 (461)
+..+|...+..+...|+.++|. ++|++... .+...|-..+...-+.|++++|.++|+++.... -.|+
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 3444444555555566666664 66665542 345556666666777777777777777766531 0131
Q ss_pred ------------HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcC-CHHHHHHHHHhC--CC
Q 012539 190 ------------EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG-RLDEALDVINKM--PM 254 (461)
Q Consensus 190 ------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~--~~ 254 (461)
...|...+....+.|..+.|+.+|..+.+.. -.+....|...+.+-.+.| +.+.|.++|+.. ..
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~ 500 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF 500 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC
Confidence 2245555666666677777777777765420 1112334443333333443 367777777665 11
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCC---CcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 255 KPHAGAWGALLNACRMYKNTEMGELASRKLVELETK---NHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 255 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
..+...|...+......|+.+.|..+|+++....|+ ....|...+..-.+.|+.+.+.++.+++.+.-
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 124446666666666677777777777777776653 33456666666667777777777777776643
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.2e-08 Score=101.24 Aligned_cols=187 Identities=13% Similarity=0.029 Sum_probs=148.2
Q ss_pred hccCCHHHHHHHHHHHH--------HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhC
Q 012539 100 THLGALDQGRWAHVYIE--------RNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMN 168 (461)
Q Consensus 100 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 168 (461)
...|++++|.+.+++++ +.. +.+...+..+...|.+.|++++|+..|++..+ .+...|..+..+|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 77899999999999998 443 55677888899999999999999999998873 4778999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHH
Q 012539 169 GAGEKSLELFSLMKQAGVRP-NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEAL 246 (461)
Q Consensus 169 g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 246 (461)
|++++|++.|++..+. .| +...+..+..++...|++++ ...|+++++. .| +...|..+..+|.+.|++++|.
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999885 44 46788889999999999999 9999998753 44 5778999999999999999999
Q ss_pred HHHHhC-CCCCCH-HHHHHHHHHHHhcCC-----hHHHHHHHHHHhhccCCCcc
Q 012539 247 DVINKM-PMKPHA-GAWGALLNACRMYKN-----TEMGELASRKLVELETKNHG 293 (461)
Q Consensus 247 ~~~~~~-~~~p~~-~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~p~~~~ 293 (461)
..|++. ...|+. ..|..+..++...++ .+...++.+.+....+.++.
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 999998 566764 477777777655554 34444444555555444443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=8.8e-10 Score=89.74 Aligned_cols=136 Identities=8% Similarity=-0.030 Sum_probs=79.1
Q ss_pred hCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHH
Q 012539 167 MNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDE 244 (461)
Q Consensus 167 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 244 (461)
..|++++|+..+++... ..|+ ...+..+...|...|++++|...|++.++. .| ++..|..+..+|.+.|++++
T Consensus 9 ~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 9 SKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCchHH
Confidence 33444555555544432 1222 223334445555555555555555555432 23 34555556666666666666
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHH-HHHHhhccCCCcchHHHHHHHHhhcCC
Q 012539 245 ALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELA-SRKLVELETKNHGAYVLLSNIYAESKN 307 (461)
Q Consensus 245 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 307 (461)
|...|++. ...| +..+|..+...+...|+.++|.+. ++++.+++|.++.+|......+...|+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 66666555 3344 345677777777777777665544 588888888888888888777777664
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.4e-08 Score=82.56 Aligned_cols=155 Identities=10% Similarity=0.044 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH-Hh
Q 012539 25 CQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSA-CT 100 (461)
Q Consensus 25 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-~~ 100 (461)
.+..+...+.+.|++++|...|++..+ .++..|..+...+.+.|++++|+..|++.... .|+...+...... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 355667788899999999999998875 36778899999999999999999999988764 3444333222111 11
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C---CHHHHHHHHHHHHhCCChHHHH
Q 012539 101 HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--R---NVYTWTSVIGGLAMNGAGEKSL 175 (461)
Q Consensus 101 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~ 175 (461)
..+....+...++..++.. |.+...+..+...+...|++++|...|+++.+ | +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2122234566777777654 44566777777788888888888888777653 2 2446777777777778877777
Q ss_pred HHHHHHH
Q 012539 176 ELFSLMK 182 (461)
Q Consensus 176 ~~~~~m~ 182 (461)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-07 Score=86.38 Aligned_cols=160 Identities=9% Similarity=-0.077 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHHHHHH-HHHHH
Q 012539 89 EVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--RNVYTWTS-VIGGL 165 (461)
Q Consensus 89 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~ 165 (461)
...+..+...+...|++++|...++++.+.. |.+...+..+...|.+.|++++|...|++... |+...... ....+
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence 3445555566666666777776666666654 34455566666666667777777776666653 33322222 22234
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHH
Q 012539 166 AMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245 (461)
Q Consensus 166 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 245 (461)
.+.++.++|+..|++..... +.+...+..+..++...|++++|...|..+.+...-..+...+..++..|...|+.++|
T Consensus 196 ~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred HhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 55556666666666665542 22355555666666666666666666666654311111244555566666666666555
Q ss_pred HHHHH
Q 012539 246 LDVIN 250 (461)
Q Consensus 246 ~~~~~ 250 (461)
...++
T Consensus 275 ~~~~r 279 (287)
T 3qou_A 275 ASXYR 279 (287)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.3e-07 Score=81.75 Aligned_cols=161 Identities=9% Similarity=-0.023 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC----cHHHHHHHHHHhhhhcCCccChhHH
Q 012539 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG----LVEEGREHFDSMRREYGIEPWLEHY 229 (461)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~~ 229 (461)
++.++..|...|...+++++|++.|++..+.| +...+..|...|.. + +.++|..+|+...+. + ++..+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-g---~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-G---SKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-T---CHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-C---CHHHH
Confidence 44555555555555566666666666655543 33444445555554 4 566666666665432 2 34455
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh----cCChHHHHHHHHHHhhccCCCcchHHH
Q 012539 230 GCLVDLYGR----AGRLDEALDVINKMP-MKPH---AGAWGALLNACRM----YKNTEMGELASRKLVELETKNHGAYVL 297 (461)
Q Consensus 230 ~~li~~~~~----~g~~~~A~~~~~~~~-~~p~---~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~ 297 (461)
..|..+|.. .+++++|..+|++.- ..|. +..+..|...|.. .++.++|...+++..+. |.++.++..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 556666655 566777777776662 2232 5566666666666 67788888888888777 555567778
Q ss_pred HHHHHhhc-C-----ChhHHHHHHHHHHhCCC
Q 012539 298 LSNIYAES-K-----NWDRVINVRQIMKAKGV 323 (461)
Q Consensus 298 l~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 323 (461)
|..+|... | ++++|...+++..+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88887654 2 78888888888777664
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.90 E-value=8.3e-08 Score=88.10 Aligned_cols=219 Identities=11% Similarity=-0.003 Sum_probs=151.0
Q ss_pred cCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 012539 67 CGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146 (461)
Q Consensus 67 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 146 (461)
.|++++|.+++++..+.. +.. + +...++++.|...+.++ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 577888999888876531 111 0 11146677776666543 4567778888888888
Q ss_pred HHhcCC-----CC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHhhcCcHHHHHHH
Q 012539 147 FWGMKE-----RN----VYTWTSVIGGLAMNGAGEKSLELFSLMKQAG---VRPN--EVTFVSVLRGCCVVGLVEEGREH 212 (461)
Q Consensus 147 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~~~~~ll~~~~~~g~~~~a~~~ 212 (461)
|.+... .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 876652 12 3578888889999999999999998875531 1122 3567778888888 999999999
Q ss_pred HHHhhhhcCCc---c-ChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHH
Q 012539 213 FDSMRREYGIE---P-WLEHYGCLVDLYGRAGRLDEALDVINKM----PMKPH----AGAWGALLNACRMYKNTEMGELA 280 (461)
Q Consensus 213 ~~~~~~~~~~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~ 280 (461)
|++.++-..-. + ...++..+...|.+.|++++|...|++. +..++ ...+..+...+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 98877532111 1 1457788899999999999999999877 11122 12566666677888999999999
Q ss_pred HHHHhhccCCCcch-----HHHHHHHHhhcCChhHHHH
Q 012539 281 SRKLVELETKNHGA-----YVLLSNIYAESKNWDRVIN 313 (461)
Q Consensus 281 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 313 (461)
+++.. ..|....+ ...++.++ ..|+.+.+.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 88865432 34455555 5677665555
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.7e-06 Score=77.27 Aligned_cols=229 Identities=10% Similarity=-0.026 Sum_probs=162.7
Q ss_pred HcCC-hHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHhccC--CHHHHHHHHHHHHHcCCCCchHHHHHHHHHH----Hhc
Q 012539 66 QCGK-SREALHLFHLMQIHDVKL-NEVSMVSVLSACTHLG--ALDQGRWAHVYIERNRLKMTVTLGTALVDMY----SKC 137 (461)
Q Consensus 66 ~~g~-~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~ 137 (461)
+.|. .++|++++.+++.. .| +...|+.--..+...+ +++++...++.++..+ |.+..+|+.-...+ .+.
T Consensus 44 ~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 44 KAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 4444 46899999988884 45 4456777777777888 8999999999988876 44555665544444 445
Q ss_pred ---CCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCc----
Q 012539 138 ---GNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGE--KSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL---- 205 (461)
Q Consensus 138 ---g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---- 205 (461)
+++++++.+++.+.+ ++..+|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.-.....+.+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 788999999988873 57788988888888888888 9999999998864 3366677666555666665
Q ss_pred --HHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCChHHH
Q 012539 206 --VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE-ALDVINKM-PM----KPHAGAWGALLNACRMYKNTEMG 277 (461)
Q Consensus 206 --~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~ll~~~~~~~~~~~a 277 (461)
++++++.+..++.. -+-|...|+.+-..+.+.|+..+ +..+..++ .. ..+...+..+...+.+.|+.++|
T Consensus 200 ~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 200 NTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 78888888877653 23356777777777777777443 44566655 11 23556777777777778888888
Q ss_pred HHHHHHHhh-ccCCCcchHHHHHH
Q 012539 278 ELASRKLVE-LETKNHGAYVLLSN 300 (461)
Q Consensus 278 ~~~~~~~~~-~~p~~~~~~~~l~~ 300 (461)
.++++.+.+ .+|.+...|...++
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHhccChHHHHHHHHHHh
Confidence 888888775 67776666554443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.9e-07 Score=80.56 Aligned_cols=168 Identities=8% Similarity=-0.064 Sum_probs=103.5
Q ss_pred HHHHHhhCCC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccC----CHHHHHHHHHHHH
Q 012539 42 ARKMFDEMPE-RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLG----ALDQGRWAHVYIE 116 (461)
Q Consensus 42 A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~ 116 (461)
|.+.|++..+ .++.++..|...|...+++++|+..|++..+.| +...+..+...+.. + +.++|...+.+..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3444443332 356666666666666677777777777666654 44555555555555 4 6777777777766
Q ss_pred HcCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHhcCCCC-----HHHHHHHHHHHHh----CCChHHHHHHHHHHHH
Q 012539 117 RNRLKMTVTLGTALVDMYSK----CGNMNKAMDFFWGMKERN-----VYTWTSVIGGLAM----NGAGEKSLELFSLMKQ 183 (461)
Q Consensus 117 ~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 183 (461)
+.+ ++..+..|..+|.. .+++++|...|++..+.+ +.++..|...|.. .+++++|+..|++..+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 554 34455556666665 667777777777666432 4667777777776 6677777777777766
Q ss_pred cCCCCCHHHHHHHHHHHhhc-C-----cHHHHHHHHHHhhh
Q 012539 184 AGVRPNEVTFVSVLRGCCVV-G-----LVEEGREHFDSMRR 218 (461)
Q Consensus 184 ~g~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~ 218 (461)
. .++...+..|...|... | +.++|..+|+...+
T Consensus 158 ~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 158 L--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp T--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred c--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 4 22334555555555432 2 67777777776654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=4.5e-08 Score=98.15 Aligned_cols=159 Identities=11% Similarity=0.020 Sum_probs=124.1
Q ss_pred cCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHH
Q 012539 137 CGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHF 213 (461)
Q Consensus 137 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 213 (461)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+.. +.+...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999998774 367899999999999999999999999998852 334778888999999999999999999
Q ss_pred HHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHHhhc
Q 012539 214 DSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMY---KNTEMGELASRKLVEL 287 (461)
Q Consensus 214 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~ 287 (461)
++..+. .| +...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++.+.
T Consensus 81 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 998763 34 5788999999999999999999999987 3344 466888888899999 9999999999999999
Q ss_pred cCCCcchHHHHH
Q 012539 288 ETKNHGAYVLLS 299 (461)
Q Consensus 288 ~p~~~~~~~~l~ 299 (461)
+|.+...|..+.
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999888887766
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.84 E-value=2.8e-07 Score=80.34 Aligned_cols=184 Identities=12% Similarity=0.031 Sum_probs=131.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--chHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-H---HHHH
Q 012539 88 NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM--TVTLGTALVDMYSKCGNMNKAMDFFWGMKE--RN-V---YTWT 159 (461)
Q Consensus 88 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~ 159 (461)
+...+..+...+...|++++|...++.+++..... ....+..+..+|.+.|++++|+..|++..+ |+ . .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44566677788899999999999999999865322 235677789999999999999999999763 32 2 2566
Q ss_pred HHHHHHHh------------------CCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhhcCcHHHHHHHHHHhhhhc
Q 012539 160 SVIGGLAM------------------NGAGEKSLELFSLMKQAGVRPNE-VTFVSVLRGCCVVGLVEEGREHFDSMRREY 220 (461)
Q Consensus 160 ~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 220 (461)
.+..++.. .|++++|+..|+++.+. .|+. ....... +.+. +...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~l~~------~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----RLVF------LKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----HHHH------HHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----HHHH------HHHHH----
Confidence 66666654 57899999999999884 4553 2221111 1000 11111
Q ss_pred CCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCc
Q 012539 221 GIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHA----GAWGALLNACRMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 221 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
......+...|.+.|++++|...|+++ ...|+. ..+..+..++...|+.++|...++.+....|++.
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 012235677889999999999999887 323442 4678888889999999999999999998888764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=7.4e-08 Score=96.56 Aligned_cols=147 Identities=9% Similarity=-0.100 Sum_probs=111.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHH
Q 012539 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELF 178 (461)
Q Consensus 102 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 178 (461)
.|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999988764 45678888899999999999999999998764 46789999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 012539 179 SLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA---GRLDEALDVINKM 252 (461)
Q Consensus 179 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 252 (461)
++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..+...+... |++++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9998853 335778888999999999999999999998753 223577888999999999 9999999999887
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2e-08 Score=81.58 Aligned_cols=60 Identities=5% Similarity=-0.249 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 012539 57 WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117 (461)
Q Consensus 57 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 117 (461)
+..+...|.+.|++++|++.|++..+.. +-+..+|..+..++...|++++|...+..+++
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 3334444444444444444444444321 11233333334444444444444444444433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.82 E-value=5.5e-08 Score=81.26 Aligned_cols=156 Identities=8% Similarity=-0.030 Sum_probs=89.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 012539 127 GTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203 (461)
Q Consensus 127 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 203 (461)
...+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.... .|+.... .+...+.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~-~~~~~~~-- 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYK-SLIAKLE-- 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHH-HHHHHHH--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHH-HHHHHHH--
Confidence 34466677777777777777777663 35567777777777777777777777776543 2333222 1111000
Q ss_pred CcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 012539 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELAS 281 (461)
Q Consensus 204 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 281 (461)
+...+...+|...+++. ...| +...+..+...+...|++++|...+
T Consensus 84 --------------------------------~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 84 --------------------------------LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp --------------------------------HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------------------HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 00000111123333332 1233 3456666666667777777777777
Q ss_pred HHHhhccCCC--cchHHHHHHHHhhcCChhHHHHHHHHHH
Q 012539 282 RKLVELETKN--HGAYVLLSNIYAESKNWDRVINVRQIMK 319 (461)
Q Consensus 282 ~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (461)
+++.+.+|.. ...+..+..+|...|+.++|...+++..
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 7777776653 3466777777777777777777766543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.80 E-value=4e-07 Score=78.30 Aligned_cols=145 Identities=6% Similarity=-0.082 Sum_probs=103.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcH
Q 012539 127 GTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206 (461)
Q Consensus 127 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 206 (461)
+..+...+...|++++|...|++...++...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34577788888999999999998888888888889999999999999999999887753 33567777888888888888
Q ss_pred HHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 012539 207 EEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH-AGAWGALLNACRMYKNTEMGELASRKLV 285 (461)
Q Consensus 207 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 285 (461)
++|...|+...+. .|+..... +...| +...|+ ...|..+...+...|++++|...++++.
T Consensus 88 ~~A~~~~~~al~~---~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQ---LRGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHT---TTTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888887653 22111000 00000 012232 2466667777778888888888888888
Q ss_pred hccCCC
Q 012539 286 ELETKN 291 (461)
Q Consensus 286 ~~~p~~ 291 (461)
+..|.+
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 887765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.80 E-value=6.2e-07 Score=90.68 Aligned_cols=243 Identities=6% Similarity=-0.049 Sum_probs=180.5
Q ss_pred hHHHHHHHHHHHcC-------ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHH-HHHHHHHHcCCCCchHH
Q 012539 55 IAWNAMLAGYAQCG-------KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR-WAHVYIERNRLKMTVTL 126 (461)
Q Consensus 55 ~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~ 126 (461)
..|...+.---.++ ..+.+..+|++.+.. .+-+...|...+..+...|+.++|. .+++..+... |.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHH
Confidence 35666665443333 134466788888775 3347778888888888889988996 9999999764 667778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC-------------CC------------HHHHHHHHHHHHhCCChHHHHHHHHHH
Q 012539 127 GTALVDMYSKCGNMNKAMDFFWGMKE-------------RN------------VYTWTSVIGGLAMNGAGEKSLELFSLM 181 (461)
Q Consensus 127 ~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m 181 (461)
+...+...-+.|+++.|.++|+.+.. |+ ...|...+....+.|..+.|..+|.+.
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88899999999999999999998763 21 236888888888899999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhh-cCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---
Q 012539 182 KQAGVRPNEVTFVSVLRGCCV-VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP--- 256 (461)
Q Consensus 182 ~~~g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p--- 256 (461)
.+.-..+....|...+..-.+ .++.+.|..+|+..++.+ +.+...+...++.....|+.+.|..+|++. ...|
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 875111223334332222223 356899999999998753 335667778888888999999999999987 3233
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 012539 257 -HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIY 302 (461)
Q Consensus 257 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 302 (461)
....|...+.--..+|+.+.+..+.+++.+..|++. ....++.-|
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 235899999999999999999999999999999875 334444433
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.4e-06 Score=77.60 Aligned_cols=214 Identities=14% Similarity=0.116 Sum_probs=168.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC--CHHHHHHHHHhcCC---CCHHHHHHHHHHH----HhC---CC
Q 012539 103 GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG--NMNKAMDFFWGMKE---RNVYTWTSVIGGL----AMN---GA 170 (461)
Q Consensus 103 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~ 170 (461)
...++|......++..+ |.+..+|+.-...+...| +++++++.++.+.. .+..+|+.-...+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 34578999999999876 556778888888888888 99999999998874 4667888776666 555 78
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHH--HHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCC------H
Q 012539 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE--EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR------L 242 (461)
Q Consensus 171 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~ 242 (461)
+++++++++++.+.. +-+..+|..-.-.+.+.|.++ ++++.++.+++. -+-|...|+.-...+.+.|. +
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhH
Confidence 999999999998863 336777777666777778877 999999999864 23356677766666777676 8
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH-HHHHHHHHhhcc---CCCcchHHHHHHHHhhcCChhHHHHHHH
Q 012539 243 DEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEM-GELASRKLVELE---TKNHGAYVLLSNIYAESKNWDRVINVRQ 316 (461)
Q Consensus 243 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 316 (461)
+++++.++++ ...| |...|+-+-..+...|+... +..+++++.+++ |.++.++..++.+|.+.|+.++|.++++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 8899888776 3344 66789988888888887444 666777777765 7788899999999999999999999999
Q ss_pred HHHh
Q 012539 317 IMKA 320 (461)
Q Consensus 317 ~m~~ 320 (461)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.5e-06 Score=79.04 Aligned_cols=160 Identities=9% Similarity=-0.069 Sum_probs=109.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC----hhHHHH
Q 012539 161 VIGGLAMNGAGEKSLELFSLMKQAGV-RPNEV----TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW----LEHYGC 231 (461)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 231 (461)
.+..+...|++++|..++++...... .|+.. .+..+...+...+++++|...++.+.+...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667777888888888887765321 12211 2224555566677888888888777652111222 225777
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-------CC-CCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC------cchHH
Q 012539 232 LVDLYGRAGRLDEALDVINKMP-------MK-PHA-GAWGALLNACRMYKNTEMGELASRKLVELETKN------HGAYV 296 (461)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~~-------~~-p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 296 (461)
+...|...|++++|...++++- .. +.. .++..+...|...|++++|...++++.++.+.. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 7888888888888887776651 11 222 267788888999999999999999988765332 45788
Q ss_pred HHHHHHhhcCC-hhHHHHHHHHHHh
Q 012539 297 LLSNIYAESKN-WDRVINVRQIMKA 320 (461)
Q Consensus 297 ~l~~~~~~~g~-~~~a~~~~~~m~~ 320 (461)
.+..+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999998887754
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.76 E-value=3.5e-07 Score=78.63 Aligned_cols=143 Identities=13% Similarity=-0.118 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCC
Q 012539 25 CQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGA 104 (461)
Q Consensus 25 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 104 (461)
.+..+...+.+.|++++|...|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 344555666677777777777777666666677777777777777777777777666543 2244555556666666666
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 012539 105 LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184 (461)
Q Consensus 105 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 184 (461)
+++|...+..+.+.........+ ...|. .........|..+..+|...|++++|.+.|++..+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~-------~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDY-------KILGL---------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEEC-------GGGTB---------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHH-------HHhcc---------ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 66666666666554311110000 00000 000012356677777777777777777777777663
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.5e-07 Score=86.41 Aligned_cols=220 Identities=10% Similarity=-0.030 Sum_probs=130.4
Q ss_pred cCCHHHHHHHHhhCCCCChhHHHHHHHHHHH-cCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 012539 36 CGDVDLARKMFDEMPERDPIAWNAMLAGYAQ-CGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVY 114 (461)
Q Consensus 36 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 114 (461)
.|++++|.+++++..+....+ +.. .+++++|...|.+. ...+...|++++|...+.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~-------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS-------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC-------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc-------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 567888888887644211100 111 35666666666554 2345556667777666666
Q ss_pred HHHcCC---CC--chHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C--CHHHHHHHHHHHHhCCChHHHHHHHHH
Q 012539 115 IERNRL---KM--TVTLGTALVDMYSKCGNMNKAMDFFWGMKE-------R--NVYTWTSVIGGLAMNGAGEKSLELFSL 180 (461)
Q Consensus 115 ~~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 180 (461)
...... .+ ...+++.+..+|.+.|++++|...|++... + -..+|..+...|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 554211 11 134566677777777777777777765432 1 13467777777777 888888888887
Q ss_pred HHHcCCC---C--CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhc---CCccC-hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012539 181 MKQAGVR---P--NEVTFVSVLRGCCVVGLVEEGREHFDSMRREY---GIEPW-LEHYGCLVDLYGRAGRLDEALDVINK 251 (461)
Q Consensus 181 m~~~g~~---p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (461)
..+.... + ...++..+...+...|++++|...|++..+.. +..+. ...+..++..+...|++++|...|++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7552111 1 13567777788888888888888888776531 11111 23566666777778888888888877
Q ss_pred CCCCCC---HH---HHHHHHHHHHhcCChHHHHH
Q 012539 252 MPMKPH---AG---AWGALLNACRMYKNTEMGEL 279 (461)
Q Consensus 252 ~~~~p~---~~---~~~~ll~~~~~~~~~~~a~~ 279 (461)
.-..|+ .. ....++.++ ..++.+.+..
T Consensus 221 al~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 221 SYSIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HTTSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HhCCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 533332 11 233444444 4566555544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.1e-07 Score=82.18 Aligned_cols=165 Identities=9% Similarity=-0.040 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhhcCcHHHHHHHHHHhhhhcC--CccC--h
Q 012539 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNE-----VTFVSVLRGCCVVGLVEEGREHFDSMRREYG--IEPW--L 226 (461)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p~--~ 226 (461)
..+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...+....+... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455666777778888888887777664221111 1233344556667788888888877654211 1111 3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCC------C
Q 012539 227 EHYGCLVDLYGRAGRLDEALDVINKM----PMKPH-----AGAWGALLNACRMYKNTEMGELASRKLVELETK------N 291 (461)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~ 291 (461)
.+++.+...|...|++++|...+++. ...|+ ..++..+...|...|++++|...++++.+..+. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 46777888888888888888877665 11122 147777888899999999999999988865432 1
Q ss_pred cchHHHHHHHHhhcCChhHH-HHHHHHHHh
Q 012539 292 HGAYVLLSNIYAESKNWDRV-INVRQIMKA 320 (461)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 320 (461)
..+|..+..+|...|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 45788899999999999999 776776543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.75 E-value=6.7e-08 Score=87.50 Aligned_cols=190 Identities=8% Similarity=-0.115 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 012539 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP-NEVTFVSVLRG 199 (461)
Q Consensus 124 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~ 199 (461)
...+..+...+.+.|++++|...|++... .+...|..+..+|.+.|++++|+..+++..+. .| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 34445555666666666666666665442 24556666666666666666666666666553 33 34555566666
Q ss_pred HhhcCcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 012539 200 CCVVGLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGE 278 (461)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 278 (461)
+...|++++|...|....+. .|+ ...+...+....+..+...... .......++......+ ..+. .|+.++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-AAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-HHHHHHHH
Confidence 66666666666666665532 221 1111112222111111111111 1112222333333322 3322 57888888
Q ss_pred HHHHHHhhccCCCcchHHHHHHHHhhc-CChhHHHHHHHHHHhC
Q 012539 279 LASRKLVELETKNHGAYVLLSNIYAES-KNWDRVINVRQIMKAK 321 (461)
Q Consensus 279 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 321 (461)
..++++.+.+|++......+...+.+. +.+++|.++|.+..+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888888888888766666666666665 6688888888877553
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.73 E-value=3.8e-08 Score=79.86 Aligned_cols=102 Identities=8% Similarity=-0.046 Sum_probs=89.3
Q ss_pred CCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHH
Q 012539 221 GIEPW-LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVL 297 (461)
Q Consensus 221 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 297 (461)
.+.|+ ...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...|+++.+++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 44553 567778888999999999999999888 3445 56689999999999999999999999999999999999999
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 298 LSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 298 l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
+..+|...|++++|.+.|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988754
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.71 E-value=5.8e-07 Score=81.75 Aligned_cols=202 Identities=9% Similarity=0.006 Sum_probs=144.8
Q ss_pred HHHHhcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChh---HHHHHHHHHHHcCChHHHHHHHHHHHHCC-CC
Q 012539 12 QKVFDGIH-EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPI---AWNAMLAGYAQCGKSREALHLFHLMQIHD-VK 86 (461)
Q Consensus 12 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~ 86 (461)
..-++.+. .|+..+...+...+.-. + ..+|..-...+.. .+...+..+...|++++|...+++..... ..
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~--~---~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~ 108 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIP--I---IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH 108 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCC--T---HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcC--H---HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCC
Confidence 33445553 58888877777765422 2 2334433333333 33445778899999999999999988743 22
Q ss_pred cCHH----HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-c----hHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----
Q 012539 87 LNEV----SMVSVLSACTHLGALDQGRWAHVYIERNRLKM-T----VTLGTALVDMYSKCGNMNKAMDFFWGMKE----- 152 (461)
Q Consensus 87 p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~----- 152 (461)
|+.. .+..+...+...+++++|...+.++.+..... + ..+++.+...|...|++++|...|++..+
T Consensus 109 ~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 188 (293)
T 3u3w_A 109 PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL 188 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence 3321 33456777788889999999999999843332 2 33688999999999999999999988762
Q ss_pred -CC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhhcC-cHHHHHHHHHHhhh
Q 012539 153 -RN----VYTWTSVIGGLAMNGAGEKSLELFSLMKQA----GVRPN-EVTFVSVLRGCCVVG-LVEEGREHFDSMRR 218 (461)
Q Consensus 153 -~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~ 218 (461)
.+ ..+|..+...|.+.|++++|++.+++..+. +..+. ..+|..+..++...| ..++|...+++...
T Consensus 189 ~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 189 HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 12 347889999999999999999999988652 22233 667888889999999 46999999988765
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.1e-07 Score=72.89 Aligned_cols=108 Identities=9% Similarity=-0.005 Sum_probs=66.2
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 012539 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACR 269 (461)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 269 (461)
.+......+.+.|++++|...|++.++. -+.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4444555556666666666666655432 1223555566666666666666666666555 2233 3456677777777
Q ss_pred hcCChHHHHHHHHHHhhccCCCcchHHHHHHH
Q 012539 270 MYKNTEMGELASRKLVELETKNHGAYVLLSNI 301 (461)
Q Consensus 270 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 301 (461)
..|++++|...|+++.+++|++..++..|.++
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 77777777777777777777777666655543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.7e-07 Score=78.57 Aligned_cols=147 Identities=12% Similarity=0.000 Sum_probs=69.7
Q ss_pred HcCCHHHHHH---HHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCc-CHHHHHHHHHHHhccCCHH
Q 012539 35 KCGDVDLARK---MFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQI----HDVKL-NEVSMVSVLSACTHLGALD 106 (461)
Q Consensus 35 ~~g~~~~A~~---~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p-~~~t~~~ll~~~~~~~~~~ 106 (461)
..|++++|.+ ++..-+.....+++.+...|...|++++|+..|++... .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3556666666 44333333445566666666666666666666665544 11111 2234444555555555555
Q ss_pred HHHHHHHHHHHc----CCC--CchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHhCCCh
Q 012539 107 QGRWAHVYIERN----RLK--MTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-----RN----VYTWTSVIGGLAMNGAG 171 (461)
Q Consensus 107 ~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~ 171 (461)
+|...+.+..+. +-. .....+..+...|...|++++|...|++... .+ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 555555554432 101 1123344455555555555555555554331 11 12234444555555555
Q ss_pred HHHHHHHHHH
Q 012539 172 EKSLELFSLM 181 (461)
Q Consensus 172 ~~A~~~~~~m 181 (461)
++|.+.+++.
T Consensus 164 ~~A~~~~~~a 173 (203)
T 3gw4_A 164 LEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.63 E-value=6.7e-07 Score=73.25 Aligned_cols=126 Identities=10% Similarity=0.017 Sum_probs=79.4
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 012539 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRM 270 (461)
Q Consensus 193 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 270 (461)
+..+...+...|++++|...|....+. .+.+...+..+...+...|++++|...+++. ...| +...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 334444445555555555555555432 1123445555555666666666666666554 2223 44567777777888
Q ss_pred cCChHHHHHHHHHHhhccCCCcchHHHHHH--HHhhcCChhHHHHHHHHHHh
Q 012539 271 YKNTEMGELASRKLVELETKNHGAYVLLSN--IYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 271 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~ 320 (461)
.|++++|...++++.+..|.+...+..+.. .+...|++++|.+.+.....
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888888888888888887776644444 47788888998888876643
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.6e-07 Score=72.45 Aligned_cols=100 Identities=12% Similarity=0.103 Sum_probs=89.2
Q ss_pred CccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHH
Q 012539 222 IEPW-LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298 (461)
Q Consensus 222 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 298 (461)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4554 466778889999999999999999987 3445 567899999999999999999999999999999999999999
Q ss_pred HHHHhhcCChhHHHHHHHHHHhC
Q 012539 299 SNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 299 ~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
+.+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.62 E-value=9.3e-06 Score=79.44 Aligned_cols=302 Identities=6% Similarity=-0.146 Sum_probs=169.5
Q ss_pred CCchHHHHHHhcCCC--CCHHHHHHHHHHHHHcCC-HHHHHHHHhhCC------CCChhHHHHHHHHHH----HcCChHH
Q 012539 6 GCLGYCQKVFDGIHE--PDVVCQTAMISACAKCGD-VDLARKMFDEMP------ERDPIAWNAMLAGYA----QCGKSRE 72 (461)
Q Consensus 6 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~------~~~~~~~~~li~~~~----~~g~~~~ 72 (461)
|+.+.+..+|+..+. |++..|...+....+.++ .+....+|+... ..+...|...+..+. .+|+.+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 556677777777653 777777777776666553 334455555422 124556666665543 3455677
Q ss_pred HHHHHHHHHHCCCCcCHH-HHHHHHHHHh-------------ccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhc-
Q 012539 73 ALHLFHLMQIHDVKLNEV-SMVSVLSACT-------------HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC- 137 (461)
Q Consensus 73 A~~~~~~m~~~~~~p~~~-t~~~ll~~~~-------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 137 (461)
+..+|++.+... ..+.. .|......-. ..+.+..|+.++..+...-...+...|...++.-...
T Consensus 108 vR~iy~rAL~~P-~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~ 186 (493)
T 2uy1_A 108 IRNGYMRALQTP-MGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENG 186 (493)
T ss_dssp HHHHHHHHHTSC-CTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHhCh-hhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCC
Confidence 777777777621 11111 1111111000 0112223333443333211011233454444442221
Q ss_pred -CC-----HHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHH
Q 012539 138 -GN-----MNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208 (461)
Q Consensus 138 -g~-----~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 208 (461)
|- .+.+..+|+++.. .+...|-..+.-+.+.|+.++|.++|++.... |+...+.. +|......++
T Consensus 187 ~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~ 260 (493)
T 2uy1_A 187 MKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEA 260 (493)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTH
T ss_pred ccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhH
Confidence 11 2345667777653 35677888888888899999999999999886 44322211 1222111111
Q ss_pred HHHHHHHhhhhc---C-----C---ccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHH-HHhcCCh
Q 012539 209 GREHFDSMRREY---G-----I---EPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP--HAGAWGALLNA-CRMYKNT 274 (461)
Q Consensus 209 a~~~~~~~~~~~---~-----~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~ll~~-~~~~~~~ 274 (461)
. ++.+...+ . . ......|...+..+.+.+.++.|..+|++. ..| +..+|...... +...++.
T Consensus 261 ~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~ 336 (493)
T 2uy1_A 261 V---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSR 336 (493)
T ss_dssp H---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred H---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCCh
Confidence 1 22222111 0 0 011355777777777888899999999988 233 33444433333 2233479
Q ss_pred HHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHH
Q 012539 275 EMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318 (461)
Q Consensus 275 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 318 (461)
+.|..+|+.+.+..|+++..+...+....+.|+.+.|..+|+..
T Consensus 337 ~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 337 ATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999988888777777788788899999999999986
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.9e-06 Score=78.26 Aligned_cols=125 Identities=11% Similarity=0.079 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCH------HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC---Cc--h
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNE------VSMVSVLSACTHLGALDQGRWAHVYIERNRLK---MT--V 124 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~ 124 (461)
.+...+..+...|++++|++.+.+..+.... .. ..+..+...+...|++++|...+.+..+.... +. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4445566677777777777777766654221 11 11222333344455555555555555432111 11 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----HHHHHHHHHHHHhCCChHHHHHHHHHH
Q 012539 125 TLGTALVDMYSKCGNMNKAMDFFWGMKE-----RN-----VYTWTSVIGGLAMNGAGEKSLELFSLM 181 (461)
Q Consensus 125 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m 181 (461)
.+++.+...|...|++++|...|++..+ ++ +.+|..+...|...|++++|+..+++.
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 2444455555555555555555544320 11 124444444444444444444444444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.3e-07 Score=78.00 Aligned_cols=149 Identities=13% Similarity=-0.005 Sum_probs=113.4
Q ss_pred ccccCCchHHHH---HHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCC------C---ChhHHHHHHHHHHHcCC
Q 012539 2 YAELGCLGYCQK---VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPE------R---DPIAWNAMLAGYAQCGK 69 (461)
Q Consensus 2 y~~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~---~~~~~~~li~~~~~~g~ 69 (461)
....|++++|.+ .+..-+.....++..+...|...|++++|...|++..+ . ...+++.+...|...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 356899999999 77664445678899999999999999999999987653 1 34578899999999999
Q ss_pred hHHHHHHHHHHHHC----CCCc--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC---CCCc--hHHHHHHHHHHHhcC
Q 012539 70 SREALHLFHLMQIH----DVKL--NEVSMVSVLSACTHLGALDQGRWAHVYIERNR---LKMT--VTLGTALVDMYSKCG 138 (461)
Q Consensus 70 ~~~A~~~~~~m~~~----~~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~li~~~~~~g 138 (461)
+++|++.|++.... +-.| ....+..+...+...|++++|...+.+..+.. ..+. ..++..+...|...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999987653 2111 23467778888999999999999999887431 1121 334577899999999
Q ss_pred CHHHHHHHHHhc
Q 012539 139 NMNKAMDFFWGM 150 (461)
Q Consensus 139 ~~~~A~~~~~~~ 150 (461)
++++|...|++.
T Consensus 162 ~~~~A~~~~~~a 173 (203)
T 3gw4_A 162 NLLEAQQHWLRA 173 (203)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999888754
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.7e-06 Score=70.73 Aligned_cols=93 Identities=8% Similarity=-0.079 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 012539 55 IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMY 134 (461)
Q Consensus 55 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 134 (461)
..|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|...+....+.. +.+..++..+...|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345555556666666666666666555532 1234444444445555555555555555544432 22333344444444
Q ss_pred HhcCCHHHHHHHHHh
Q 012539 135 SKCGNMNKAMDFFWG 149 (461)
Q Consensus 135 ~~~g~~~~A~~~~~~ 149 (461)
.+.|++++|...|++
T Consensus 92 ~~~~~~~~A~~~~~~ 106 (166)
T 1a17_A 92 MALGKFRAALRDYET 106 (166)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHH
Confidence 444444444444443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.59 E-value=9.3e-07 Score=68.24 Aligned_cols=112 Identities=21% Similarity=0.172 Sum_probs=66.5
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 012539 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PM-KPHAGAWGALLNACR 269 (461)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~ 269 (461)
.+..+...+...|++++|..++..+.+. .+.+...+..+...+.+.|++++|...++++ .. ..+..+|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 3444444555555555555555555432 1123445555555556666666666655554 11 224556667777777
Q ss_pred hcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhc
Q 012539 270 MYKNTEMGELASRKLVELETKNHGAYVLLSNIYAES 305 (461)
Q Consensus 270 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 305 (461)
..|++++|...++++.+..|.++..+..+..++...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 778888888888888888887777777776666543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.1e-07 Score=75.26 Aligned_cols=97 Identities=7% Similarity=-0.035 Sum_probs=80.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 012539 225 WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIY 302 (461)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 302 (461)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++.+++|+++.++..+..+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3556677778888888888888888876 3334 5668888888888999999999999999999999988999999999
Q ss_pred hhcCChhHHHHHHHHHHhC
Q 012539 303 AESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 303 ~~~g~~~~a~~~~~~m~~~ 321 (461)
...|++++|.+.+++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999887664
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=1e-06 Score=68.61 Aligned_cols=115 Identities=12% Similarity=0.026 Sum_probs=69.9
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 012539 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACR 269 (461)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 269 (461)
.+..+...+...|++++|...++..... .+.+...+..+...+...|++++|...+++. ...| +...|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 3444444455555555555555554432 1123445555555555666666666555554 1223 3456666667777
Q ss_pred hcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCCh
Q 012539 270 MYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNW 308 (461)
Q Consensus 270 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 308 (461)
..|++++|...++++.+..|.+...+..+..++...|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 788888888888888888888777777777777776654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=7.3e-05 Score=68.71 Aligned_cols=179 Identities=11% Similarity=-0.022 Sum_probs=121.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 012539 57 WNAMLAGYAQCGKSREALHLFHLMQIHDVKL-NEVSMVSVLSACTHLG-ALDQGRWAHVYIERNRLKMTVTLGTALVDMY 134 (461)
Q Consensus 57 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 134 (461)
++.+-......+..++|++++.+++.. .| +..+|+.--..+...+ .++++...++.++... +.+..+|+.-...+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 333334444455567888888888874 34 4456777767777777 5888888888888775 55667777666666
Q ss_pred Hhc-C-CHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 012539 135 SKC-G-NMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGE--------KSLELFSLMKQAGVRPNEVTFVSVLRGCC 201 (461)
Q Consensus 135 ~~~-g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 201 (461)
.+. + ++++++++++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 665 6 78888888888875 46677877666666666666 8888888888763 336677776666666
Q ss_pred hcCc-------HHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCC
Q 012539 202 VVGL-------VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR 241 (461)
Q Consensus 202 ~~g~-------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 241 (461)
+.+. ++++++.+..++.. .+-|...|+.+-..+.+.|+
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred hccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 6654 57777777776642 22356666666666666554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=9.7e-07 Score=69.16 Aligned_cols=80 Identities=13% Similarity=0.076 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhh
Q 012539 227 EHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAE 304 (461)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 304 (461)
..+..+...|...|++++|...+++. ...| +...|..+...+...|++++|...++++.+..|.+...+..+..++..
T Consensus 51 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 51 KLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 34444444444444444444444443 1122 344566666667777777777777777777777776677777766665
Q ss_pred cC
Q 012539 305 SK 306 (461)
Q Consensus 305 ~g 306 (461)
.|
T Consensus 131 ~~ 132 (133)
T 2lni_A 131 QY 132 (133)
T ss_dssp HT
T ss_pred hc
Confidence 44
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.52 E-value=8e-07 Score=71.94 Aligned_cols=85 Identities=14% Similarity=0.045 Sum_probs=37.3
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHH
Q 012539 98 ACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKS 174 (461)
Q Consensus 98 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 174 (461)
.+.+.|++++|...|+.+++.. |.+...|..+..+|.+.|++++|+..|++.. ..++..|..+..+|.+.|++++|
T Consensus 45 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA 123 (151)
T 3gyz_A 45 DFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKA 123 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHH
Confidence 3333333333333333333332 2233344444444444444444444444433 12334444555555555555555
Q ss_pred HHHHHHHHH
Q 012539 175 LELFSLMKQ 183 (461)
Q Consensus 175 ~~~~~~m~~ 183 (461)
+..|++..+
T Consensus 124 ~~~~~~al~ 132 (151)
T 3gyz_A 124 KECFELVIQ 132 (151)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.51 E-value=9.7e-07 Score=82.02 Aligned_cols=144 Identities=13% Similarity=-0.006 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHH
Q 012539 154 NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLV 233 (461)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 233 (461)
+...|..+...|.+.|++++|+..|++..+.. |+...+ ..+.+..+-. .....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~~---------~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQA---------LRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHHH---------HHHHHHHHHH
Confidence 34566667777777777777777777776642 221000 0011100000 0135677788
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHH
Q 012539 234 DLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311 (461)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 311 (461)
.+|.+.|++++|...+++. ...| +...|..+..++...|++++|...|+++.+++|.+..++..+..++...|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888777 3334 5668888888899999999999999999999999999999999999999999998
Q ss_pred -HHHHHHHH
Q 012539 312 -INVRQIMK 319 (461)
Q Consensus 312 -~~~~~~m~ 319 (461)
...++.|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 45666664
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.51 E-value=4.2e-06 Score=64.43 Aligned_cols=26 Identities=23% Similarity=0.440 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQ 81 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~ 81 (461)
.|..+...+...|++++|++.|+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~ 36 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKAL 36 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.7e-06 Score=76.94 Aligned_cols=180 Identities=7% Similarity=-0.080 Sum_probs=108.8
Q ss_pred HcCCHHHHHHHHhhCCCC---ChhHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCcCH---------------
Q 012539 35 KCGDVDLARKMFDEMPER---DPIAWNAM-------LAGYAQCGKSREALHLFHLMQIHDVKLNE--------------- 89 (461)
Q Consensus 35 ~~g~~~~A~~~~~~m~~~---~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~--------------- 89 (461)
..++.+.|.+.|.+..+- ....|+.+ ...+.+.++..+++..+++-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 589999999999987642 46788888 5666666667777776666544 22321
Q ss_pred -------HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C----HHH
Q 012539 90 -------VSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKER-N----VYT 157 (461)
Q Consensus 90 -------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~----~~~ 157 (461)
.........+...|++++|.+++..+...+ +-+. ....+...+.+.|++++|+..|+..... + ...
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~-p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG-SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT-CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence 122234455566677777777766665543 2222 4444555666777777777777655432 1 235
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhcCcHHHHHHHHHHhhh
Q 012539 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN--EVTFVSVLRGCCVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (461)
+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++..
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56666667777777777777776654322143 22334445556666777777777766654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.50 E-value=5.1e-07 Score=81.62 Aligned_cols=188 Identities=9% Similarity=-0.077 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHH
Q 012539 90 VSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLA 166 (461)
Q Consensus 90 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 166 (461)
..+..+...+...|++++|...+..+++.. +.+...+..+..+|.+.|++++|...|++..+ .+...|..+..+|.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344444445555555555555555555443 33455555566666666666666666665543 24556666666777
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHH
Q 012539 167 MNGAGEKSLELFSLMKQAGVRPNE-VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEA 245 (461)
Q Consensus 167 ~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 245 (461)
..|++++|+..|++..+.. |+. ..+...+....+ ..++..... ... ....++......+...+ .|+.++|
T Consensus 84 ~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~~~~-~~~-~~~~~~~~i~~~l~~l~--~~~~~~A 154 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKRWNS-IEE-RRIHQESELHSYLTRLI--AAERERE 154 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHHHHH-HHH-TCCCCCCHHHHHHHHHH--HHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHHHHH-HHH-HHHhhhHHHHHHHHHHH--HHHHHHH
Confidence 7777777777776665421 210 011111111111 111111111 111 13344444444443332 5777888
Q ss_pred HHHHHhC-CCCCCHHHH-HHHHHHHHhc-CChHHHHHHHHHHhhc
Q 012539 246 LDVINKM-PMKPHAGAW-GALLNACRMY-KNTEMGELASRKLVEL 287 (461)
Q Consensus 246 ~~~~~~~-~~~p~~~~~-~~ll~~~~~~-~~~~~a~~~~~~~~~~ 287 (461)
.+.+++. ...|+.... ..+-..+... +.++++..+|+++.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8777666 445655433 3333334444 5677888888887654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.5e-06 Score=74.91 Aligned_cols=131 Identities=9% Similarity=-0.122 Sum_probs=63.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC--hhHHHHHHHHHHh
Q 012539 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW--LEHYGCLVDLYGR 238 (461)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~ 238 (461)
....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++.+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHHH
Confidence 334444455555555555444332 233223333333444555555555555433210 0 110 1234455555666
Q ss_pred cCCHHHHHHHHHhCCCC---CC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHH
Q 012539 239 AGRLDEALDVINKMPMK---PH--AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296 (461)
Q Consensus 239 ~g~~~~A~~~~~~~~~~---p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 296 (461)
.|++++|+..|++.... |. ...+.....++...|+.++|...|+++...+|. ...+.
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~ 245 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA 245 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence 66666666666555111 32 124444455566666777777777777666665 43333
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=4e-06 Score=65.17 Aligned_cols=92 Identities=10% Similarity=-0.035 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 135 (461)
.|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+....+.. +.+...+..+...|.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 44444445555555555555555444421 1133344444444444444444444444444432 222333333444444
Q ss_pred hcCCHHHHHHHHHh
Q 012539 136 KCGNMNKAMDFFWG 149 (461)
Q Consensus 136 ~~g~~~~A~~~~~~ 149 (461)
+.|++++|...|++
T Consensus 92 ~~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 92 SLNKHVEAVAYYKK 105 (131)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHH
Confidence 44444444444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.7e-06 Score=65.40 Aligned_cols=99 Identities=14% Similarity=0.042 Sum_probs=80.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCC--CcchHHHHHH
Q 012539 225 WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETK--NHGAYVLLSN 300 (461)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 300 (461)
+...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++.+..|. +...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3556777788888888888888888776 2233 5567888888888899999999999999999988 8888999999
Q ss_pred HHhhc-CChhHHHHHHHHHHhCCC
Q 012539 301 IYAES-KNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 301 ~~~~~-g~~~~a~~~~~~m~~~g~ 323 (461)
+|... |++++|.+.++...+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999988876543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=7.5e-05 Score=68.27 Aligned_cols=230 Identities=12% Similarity=-0.003 Sum_probs=140.2
Q ss_pred HHcCChH-HHHHHHHHHHHCCCCcCH-HHHHHHHHHHhccCC----------HHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 012539 65 AQCGKSR-EALHLFHLMQIHDVKLNE-VSMVSVLSACTHLGA----------LDQGRWAHVYIERNRLKMTVTLGTALVD 132 (461)
Q Consensus 65 ~~~g~~~-~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~ 132 (461)
.+.|.+. +|++++.++... .|+. ..|+.--..+...+. ++++..++..++... |-+..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3455543 678888877764 4443 344444333333332 567777777777765 556677776666
Q ss_pred HHHhcC--CHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc---
Q 012539 133 MYSKCG--NMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGA-GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV--- 203 (461)
Q Consensus 133 ~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--- 203 (461)
.+.+.| .+++++.+++.+.+ +|..+|+--.-.+...|. ++++++.++++.+.. +-|...|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 666777 47888888887763 567788877777777777 488888888887753 33566666554444443
Q ss_pred -----------CcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhc-----------CCHHHHHHHHHhC-CCCCCHH
Q 012539 204 -----------GLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRA-----------GRLDEALDVINKM-PMKPHAG 259 (461)
Q Consensus 204 -----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~-~~~p~~~ 259 (461)
+.++++.+.+...+.. .| |...|+-+-..+.+. +.++++++.++++ ...||.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~- 271 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN- 271 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred cccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-
Confidence 4567777777776642 34 456665554444444 3456666666666 344554
Q ss_pred HHHHHHHH-----HHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 012539 260 AWGALLNA-----CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIY 302 (461)
Q Consensus 260 ~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 302 (461)
.|..+-.+ ....+..++....+.++.+++|....-|.-+...+
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 34322211 11345566777777777777777666666554443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-06 Score=72.46 Aligned_cols=117 Identities=9% Similarity=0.005 Sum_probs=74.1
Q ss_pred HcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHH-HHhcCCH--HH
Q 012539 66 QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM-YSKCGNM--NK 142 (461)
Q Consensus 66 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~ 142 (461)
..|++++|+..|++..+.. +.+...+..+...+...|++++|...+..+.+.. +.+...+..+..+ |...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4566677777777666543 2355666666677777777777777777766654 3355566666666 6667776 77
Q ss_pred HHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 012539 143 AMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184 (461)
Q Consensus 143 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 184 (461)
|...|+.... .+...|..+...|...|++++|+..|++..+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777766542 34566777777777777777777777777663
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=3.9e-06 Score=65.62 Aligned_cols=95 Identities=11% Similarity=-0.042 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDM 133 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 133 (461)
+..|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 4455556666666666666666666655432 1244455555555555555555555555555543 2334444445555
Q ss_pred HHhcCCHHHHHHHHHhc
Q 012539 134 YSKCGNMNKAMDFFWGM 150 (461)
Q Consensus 134 ~~~~g~~~~A~~~~~~~ 150 (461)
|.+.|++++|.+.|++.
T Consensus 94 ~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 55555555555555443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.9e-07 Score=74.83 Aligned_cols=118 Identities=14% Similarity=0.107 Sum_probs=73.2
Q ss_pred cCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCh--HHH
Q 012539 203 VGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNA-CRMYKNT--EMG 277 (461)
Q Consensus 203 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~~~~--~~a 277 (461)
.|++++|...++...+. .+.+...+..+...|...|++++|...|++. ...| +...|..+... +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 45555555555555432 1223455566666666666666666666555 1122 44455566666 5667776 777
Q ss_pred HHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 278 ELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 278 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
...++++.+..|.+..++..++.+|...|++++|...+++..+..
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 777777777777777777777778888888888888777776643
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1.2e-06 Score=70.12 Aligned_cols=96 Identities=13% Similarity=-0.038 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHh
Q 012539 226 LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303 (461)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 303 (461)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++.+++|.++.++..+..+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 455666777788888888888888776 3334 55678888888888899999999999999999988888888999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 012539 304 ESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~ 321 (461)
..|++++|.+.++...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999988887654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.45 E-value=3.4e-06 Score=78.32 Aligned_cols=144 Identities=13% Similarity=-0.030 Sum_probs=83.2
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 012539 53 DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132 (461)
Q Consensus 53 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 132 (461)
+...|..+...|.+.|++++|+..|++..+.. |+...+ ..+.+..+- +....++..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~--------~~~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ--------ALRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH--------HHHHHHHHHHHH
Confidence 34567777788888888888888888777643 221000 000000000 001345555666
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHH
Q 012539 133 MYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEG 209 (461)
Q Consensus 133 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 209 (461)
+|.+.|++++|+..|++..+ .+..+|..+..+|...|++++|+..|++..+.. +.+...+..+..++...|+.+++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665542 355666666777777777777777777766642 22355566666666666776666
Q ss_pred -HHHHHHhhh
Q 012539 210 -REHFDSMRR 218 (461)
Q Consensus 210 -~~~~~~~~~ 218 (461)
..++..|..
T Consensus 284 ~~~~~~~~~~ 293 (336)
T 1p5q_A 284 EKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 345555543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=2e-07 Score=79.41 Aligned_cols=172 Identities=9% Similarity=-0.063 Sum_probs=102.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCc
Q 012539 129 ALVDMYSKCGNMNKAMDFFWGMKER---NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205 (461)
Q Consensus 129 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 205 (461)
..+......|++++|.+.|+..... ....|..+...+...|++++|+..|++..+. .|+...+... .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~ 78 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------I 78 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------H
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------h
Confidence 3445556667777777777654432 4456777888888899999999999888773 2221100000 0
Q ss_pred HHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 012539 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRK 283 (461)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 283 (461)
...-. .. .....+..+..+|.+.|++++|...+++. ...| +...+..+..++...|++++|...+++
T Consensus 79 ~~~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 79 LLDKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 00000 00 01245666777777888888888877766 2233 556788888889999999999999999
Q ss_pred HhhccCCCcchHHHHHHHHhhcCChhHHH-HHHHHHHhC
Q 012539 284 LVELETKNHGAYVLLSNIYAESKNWDRVI-NVRQIMKAK 321 (461)
Q Consensus 284 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 321 (461)
+.++.|.+..++..+..++...++.+++. ..+..|...
T Consensus 148 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 148 AASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999889999998888887777766 455555433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.8e-06 Score=67.25 Aligned_cols=95 Identities=14% Similarity=0.095 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhh
Q 012539 227 EHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAE 304 (461)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 304 (461)
..+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++.+++|.++.+|..+..+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555666677777777777777665 2233 456777777778888888888888888888888888888888888888
Q ss_pred cCChhHHHHHHHHHHhC
Q 012539 305 SKNWDRVINVRQIMKAK 321 (461)
Q Consensus 305 ~g~~~~a~~~~~~m~~~ 321 (461)
.|++++|.+.+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 88888888888877653
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.5e-06 Score=68.81 Aligned_cols=94 Identities=9% Similarity=-0.035 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012539 124 VTLGTALVDMYSKCGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200 (461)
Q Consensus 124 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 200 (461)
...+..+...+.+.|++++|...|+... ..+...|..+..+|...|++++|+..|++..... +.+...+..+..++
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 3344445555666666666666665543 2345556666666666666666666666665532 12344555555566
Q ss_pred hhcCcHHHHHHHHHHhhh
Q 012539 201 CVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~ 218 (461)
...|++++|...|+..++
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666665543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=9e-07 Score=75.30 Aligned_cols=161 Identities=12% Similarity=-0.029 Sum_probs=79.0
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCH
Q 012539 29 MISACAKCGDVDLARKMFDEMPER---DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGAL 105 (461)
Q Consensus 29 li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 105 (461)
.+......|++++|.+.|+...+. ....|..+...+...|++++|+..|++..... |+...+... ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~ 79 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------IL 79 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hH
Confidence 334445567777777777654332 45577888888889999999999999888742 211100000 00
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012539 106 DQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKSLELFSLMK 182 (461)
Q Consensus 106 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 182 (461)
..-. . .....++..+..+|.+.|++++|...|+... ..+..+|..+..+|...|++++|++.|++..
T Consensus 80 ~~~~---~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 80 LDKK---K-------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHH---H-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHH---H-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 0000 0 0012344445555555666666665555543 2344556666666666666666666666665
Q ss_pred HcCCCCCHHHHHHHHHHHhhcCcHHHHH
Q 012539 183 QAGVRPNEVTFVSVLRGCCVVGLVEEGR 210 (461)
Q Consensus 183 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 210 (461)
+.. +-+...+..+..++...++.+++.
T Consensus 150 ~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 150 SLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 531 123444445555555555555444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=7e-05 Score=68.84 Aligned_cols=215 Identities=13% Similarity=0.031 Sum_probs=155.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC-CHHHHHHHHHhcCC---CCHHHHHHHHHHHHhC-C-ChHHHH
Q 012539 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG-NMNKAMDFFWGMKE---RNVYTWTSVIGGLAMN-G-AGEKSL 175 (461)
Q Consensus 102 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~ 175 (461)
....++|.++...++..+ +.+..+|+.-...+...| .+++++++++.+.. ++..+|+.-...+.+. + ++++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 344568899999999876 556778887777888888 59999999998874 4778899888888776 7 899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHH--------HHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCC------
Q 012539 176 ELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVE--------EGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR------ 241 (461)
Q Consensus 176 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------ 241 (461)
++++++.+.. +-|..+|+.-.-...+.|..+ ++++.++.+++. -+-|...|+.....+.+.++
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchH
Confidence 9999998753 335666665554555555554 889999888764 23367778888878888776
Q ss_pred -HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh--------------------HHHHHHHHHHhhcc------CCCc
Q 012539 242 -LDEALDVINKM-PMKP-HAGAWGALLNACRMYKNT--------------------EMGELASRKLVELE------TKNH 292 (461)
Q Consensus 242 -~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~--------------------~~a~~~~~~~~~~~------p~~~ 292 (461)
++++++.++++ ...| |...|+-+-..+.+.|+. .........+.... +.++
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 68888888776 3345 566888777777776654 22233333332222 4566
Q ss_pred chHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 293 GAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
.+...|+.+|...|+.++|.++++.+.+
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 6788999999999999999999999864
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.37 E-value=4.1e-06 Score=66.09 Aligned_cols=97 Identities=14% Similarity=0.050 Sum_probs=74.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 012539 225 WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIY 302 (461)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 302 (461)
+...+..+...+...|++++|...|++. ...| +...|..+...+...|+++.|...++++.+..|.++.++..+..+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4566667777777777777777777665 2233 4557777777788888888888888888888888888888888888
Q ss_pred hhcCChhHHHHHHHHHHhC
Q 012539 303 AESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 303 ~~~g~~~~a~~~~~~m~~~ 321 (461)
...|++++|...+++..+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 8888888888888887654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=7.9e-06 Score=62.13 Aligned_cols=73 Identities=16% Similarity=0.134 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHH
Q 012539 227 EHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299 (461)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 299 (461)
..+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..|.++..+..+.
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 39 VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 33334444444444444444444433 1112 2334555555555566666666666666666665554444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.32 E-value=3.5e-06 Score=69.12 Aligned_cols=100 Identities=14% Similarity=0.044 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 012539 191 VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNA 267 (461)
Q Consensus 191 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 267 (461)
..+..+...+...|++++|...|+..++. .| +...|..+..+|.+.|++++|...|++. ...| +...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34444455555555555555555555432 22 3444445555555555555555555444 2222 23344444444
Q ss_pred HHhcCChHHHHHHHHHHhhccCCCcc
Q 012539 268 CRMYKNTEMGELASRKLVELETKNHG 293 (461)
Q Consensus 268 ~~~~~~~~~a~~~~~~~~~~~p~~~~ 293 (461)
+...|++++|...++++.++.|++..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchH
Confidence 55555555555555555555554444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=2.6e-06 Score=66.07 Aligned_cols=94 Identities=13% Similarity=0.024 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhc
Q 012539 228 HYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAES 305 (461)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 305 (461)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++.+++|+++.++..+..+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4555677888899999999999887 3345 5668888888899999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhC
Q 012539 306 KNWDRVINVRQIMKAK 321 (461)
Q Consensus 306 g~~~~a~~~~~~m~~~ 321 (461)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.4e-05 Score=63.74 Aligned_cols=107 Identities=14% Similarity=-0.038 Sum_probs=56.2
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 012539 193 FVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW----LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLN 266 (461)
Q Consensus 193 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 266 (461)
+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|...+++. ...| +...|..+..
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 33334444444444444444444331 2232 334444555555555555555555444 1122 3445666666
Q ss_pred HHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 012539 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIY 302 (461)
Q Consensus 267 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 302 (461)
++...|++++|...++++.+..|.+...+..+..+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 667777777777777777777777665555554443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=6e-06 Score=62.81 Aligned_cols=97 Identities=10% Similarity=0.036 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHh
Q 012539 226 LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303 (461)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 303 (461)
+..+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++.+..|.++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456677788888899999999988887 2234 66788888888999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCC
Q 012539 304 ESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~g 322 (461)
..|++++|.+.+++..+..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHcC
Confidence 9999999999999887643
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=8.5e-06 Score=65.01 Aligned_cols=97 Identities=12% Similarity=0.002 Sum_probs=88.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHH
Q 012539 225 WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH----AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299 (461)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 299 (461)
+...+..+...+...|++++|...|++. ...|+ ...|..+...+...|++++|...++++.+..|.+...+..+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4677888899999999999999999987 55677 568888888899999999999999999999999999999999
Q ss_pred HHHhhcCChhHHHHHHHHHHhC
Q 012539 300 NIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 300 ~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
.+|...|++++|.+.+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999988764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.3e-05 Score=62.60 Aligned_cols=60 Identities=7% Similarity=-0.220 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIE 116 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 116 (461)
++..|...+.+.|++++|++.|++.++.. +-+..+|..+..++...|++++|...+.+.+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444445555555555555555444421 1123334444444444444444444444433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.4e-05 Score=75.04 Aligned_cols=97 Identities=8% Similarity=-0.089 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHc--CC--CCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-----
Q 012539 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQA--GV--RPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW----- 225 (461)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----- 225 (461)
.++..+...|...|++++|..++++.... +. +|. ..++..++..|...|++++|..+++.......-.++
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence 35556666666666666666666665432 11 111 345666667777777777777777665532111111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 226 LEHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
...+..+...+...|++++|...|.+.
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 234555666667778888777666544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.4e-05 Score=78.00 Aligned_cols=117 Identities=9% Similarity=0.030 Sum_probs=83.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcH
Q 012539 130 LVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLV 206 (461)
Q Consensus 130 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 206 (461)
+...|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.+++..+.. +.+...+..+..++...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 45566778888888888887653 457788888888888888888888888888752 22466777888888888888
Q ss_pred HHHHHHHHHhhhhcCCcc-ChhHHHHHHHH--HHhcCCHHHHHHHHH
Q 012539 207 EEGREHFDSMRREYGIEP-WLEHYGCLVDL--YGRAGRLDEALDVIN 250 (461)
Q Consensus 207 ~~a~~~~~~~~~~~~~~p-~~~~~~~li~~--~~~~g~~~~A~~~~~ 250 (461)
++|...|+++.+. .| +...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888887753 33 34455555555 777788888888877
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00023 Score=68.09 Aligned_cols=189 Identities=7% Similarity=-0.078 Sum_probs=133.8
Q ss_pred HHHHHHcCCHHHHHHHHhhCCCC-----C---------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCcC
Q 012539 30 ISACAKCGDVDLARKMFDEMPER-----D---------------PIAWNAMLAGYAQCGKSREALHLFHLMQIHD-VKLN 88 (461)
Q Consensus 30 i~~~~~~g~~~~A~~~~~~m~~~-----~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~ 88 (461)
...+.+.|++++|++.|..+.+. + ..++..|...|...|++++|.+.+.++...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34567789999999998875421 0 1247789999999999999999998876521 1112
Q ss_pred HH----HHHHHHHHHhccCCHHHHHHHHHHHHH----cCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------
Q 012539 89 EV----SMVSVLSACTHLGALDQGRWAHVYIER----NRLKM-TVTLGTALVDMYSKCGNMNKAMDFFWGMKE------- 152 (461)
Q Consensus 89 ~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------- 152 (461)
.. +.+.+-..+...|+.+.+..++..... .+..+ -..++..|...|...|++++|..++++...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 233333444567889999988887664 22222 245777899999999999999999887642
Q ss_pred -C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHc--CCC-C-C--HHHHHHHHHHHhhcCcHHHHHHHHHHhhh
Q 012539 153 -R-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQA--GVR-P-N--EVTFVSVLRGCCVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 153 -~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~-p-~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (461)
+ .+.+|..++..|...|++++|..++++.... .+. | . ...+..+...+...+++++|...|....+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 2467888999999999999999999887542 121 2 1 24455666677788999999888877764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.27 E-value=7.5e-06 Score=65.36 Aligned_cols=99 Identities=9% Similarity=-0.103 Sum_probs=54.9
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 012539 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYK 272 (461)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~ 272 (461)
.+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++...|
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 3344444555555555555555432 1123445555555555556666665555554 2223 3345556666677777
Q ss_pred ChHHHHHHHHHHhhccCCCcchH
Q 012539 273 NTEMGELASRKLVELETKNHGAY 295 (461)
Q Consensus 273 ~~~~a~~~~~~~~~~~p~~~~~~ 295 (461)
++++|...++++.+..|.++...
T Consensus 101 ~~~~A~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 101 DLDGAESGFYSARALAAAQPAHE 123 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTCGGGH
T ss_pred CHHHHHHHHHHHHHhCCCCcchH
Confidence 77777777777777777665443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=8.8e-06 Score=63.28 Aligned_cols=104 Identities=11% Similarity=-0.038 Sum_probs=52.0
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 012539 195 SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYK 272 (461)
Q Consensus 195 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~ 272 (461)
.+...+...|++++|...|...++. .+.+...|..+..+|.+.|++++|...+++. ...| +...|..+..++...|
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 3334444444444444444444321 1112344444555555555555555555444 2223 3345555666666666
Q ss_pred ChHHHHHHHHHHhhcc------CCCcchHHHHHH
Q 012539 273 NTEMGELASRKLVELE------TKNHGAYVLLSN 300 (461)
Q Consensus 273 ~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 300 (461)
++++|...++++.+++ |.+......+..
T Consensus 87 ~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 87 EYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 6667777777766666 555444444433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.8e-05 Score=63.58 Aligned_cols=91 Identities=11% Similarity=0.011 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 012539 126 LGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV 202 (461)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 202 (461)
.+..+...|.+.|++++|+..|++... .+...|..+..+|.+.|++++|+..|++..+.. +.+...+..+..++..
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 334444444444444444444444331 234444444444555555555555555444431 1123444444444444
Q ss_pred cCcHHHHHHHHHHhh
Q 012539 203 VGLVEEGREHFDSMR 217 (461)
Q Consensus 203 ~g~~~~a~~~~~~~~ 217 (461)
.|++++|...|+..+
T Consensus 92 ~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 92 MADYKGAKEAYEKGI 106 (164)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 555555555554444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00037 Score=68.08 Aligned_cols=200 Identities=9% Similarity=-0.075 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC-C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 106 DQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE-R-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 106 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
+.+..++++++... +.+..+|...+..+.+.|+.++|..+|++... | +...|. .|+...+.++. ++.+.+
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~ 267 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHH
Confidence 34566777776653 44566676677777777777777777765432 2 222222 12221111121 222221
Q ss_pred cC---------CCC---CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcC-CHHHHHHHHH
Q 012539 184 AG---------VRP---NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG-RLDEALDVIN 250 (461)
Q Consensus 184 ~g---------~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~ 250 (461)
.- ..+ ....|...+....+.+..+.|+.+|... +. . ..+...|...+..-...+ +.+.|..+|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 10 001 1234555566666677788888888877 32 1 123344443333333333 5888888887
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 251 KM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 251 ~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
.. ..-| ++..|...+.-....|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++.+
T Consensus 345 ~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 345 SGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66 1112 23456666666777788888888888872 3345666666666677888888887777654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.23 E-value=4.5e-06 Score=65.31 Aligned_cols=93 Identities=11% Similarity=0.009 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcc-------hHHHH
Q 012539 228 HYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHG-------AYVLL 298 (461)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l 298 (461)
.+..+...+.+.|++++|+..|++. ...| +...|..+..+|...|++++|+..+++++++.|.+.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4455666677777777777777665 3334 3456777777777777788888877777777665432 55667
Q ss_pred HHHHhhcCChhHHHHHHHHHHh
Q 012539 299 SNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 299 ~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
..+|...|++++|++.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 7777788888888888877654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00072 Score=61.74 Aligned_cols=217 Identities=13% Similarity=0.013 Sum_probs=153.7
Q ss_pred ccCC-HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC----------HHHHHHHHHhcC---CCCHHHHHHHHHHHH
Q 012539 101 HLGA-LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGN----------MNKAMDFFWGMK---ERNVYTWTSVIGGLA 166 (461)
Q Consensus 101 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~---~~~~~~~~~li~~~~ 166 (461)
+.|. .++|......++..+ |.+..+|+.=-......|. +++++.+++.+. .++..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 3444 457899999998876 4455666644444433333 678888888876 357889999888888
Q ss_pred hCCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCc-HHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhc----
Q 012539 167 MNGA--GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL-VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA---- 239 (461)
Q Consensus 167 ~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---- 239 (461)
+.|+ +++++++++++.+.. +-|...|+.-.-.+...|. .+++++.+..+++. -+.|...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcc
Confidence 8884 899999999999864 3367777766666677777 68999999998864 233566777666666554
Q ss_pred ----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CChHHHHHHHHHHhhccCCCcchHH
Q 012539 240 ----------GRLDEALDVINKM-PMKP-HAGAWGALLNACRMY-----------KNTEMGELASRKLVELETKNHGAYV 296 (461)
Q Consensus 240 ----------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~~~~ 296 (461)
+.++++++.+.+. ...| |...|+-+-..+... +.+++++..++++.++.|++.-.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 4578888888777 3344 556777655555444 4578999999999999999855544
Q ss_pred HHHHH---HhhcCChhHHHHHHHHHHhC
Q 012539 297 LLSNI---YAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 297 ~l~~~---~~~~g~~~~a~~~~~~m~~~ 321 (461)
.++.. ....|..+++...+.++++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 44332 22467788888888888763
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.4e-05 Score=60.18 Aligned_cols=94 Identities=14% Similarity=-0.038 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--chHHHHHHH
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKM--TVTLGTALV 131 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li 131 (461)
...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +. +..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3344445555555555555555555544432 1233344444444444444444444444444432 12 233333344
Q ss_pred HHHHhc-CCHHHHHHHHHh
Q 012539 132 DMYSKC-GNMNKAMDFFWG 149 (461)
Q Consensus 132 ~~~~~~-g~~~~A~~~~~~ 149 (461)
.+|.+. |++++|.+.|+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~ 102 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEAR 102 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 444444 444444444433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.7e-05 Score=62.44 Aligned_cols=99 Identities=9% Similarity=-0.076 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 012539 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNA 267 (461)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 267 (461)
...+..+...+...|++++|...|...... .+.+...+..+..+|...|++++|...+++. ...| +...|..+...
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 344444444444555555555555444432 1112344455555555555555555555444 1122 34455666666
Q ss_pred HHhcCChHHHHHHHHHHhhccCC
Q 012539 268 CRMYKNTEMGELASRKLVELETK 290 (461)
Q Consensus 268 ~~~~~~~~~a~~~~~~~~~~~p~ 290 (461)
+...|++++|...++++.+..|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 66666666666666666666655
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.17 E-value=2.5e-05 Score=60.53 Aligned_cols=29 Identities=0% Similarity=0.033 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
..+|..+...|...|++++|.+.|++..+
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34455555556666666666666666655
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1.9e-05 Score=61.18 Aligned_cols=95 Identities=11% Similarity=-0.016 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CCc----hHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRL--KMT----VTLGTA 129 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 129 (461)
.|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+..+.+... +++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444444444444444444444444432 12333444444444444455555444444443321 011 334444
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC
Q 012539 130 LVDMYSKCGNMNKAMDFFWGMK 151 (461)
Q Consensus 130 li~~~~~~g~~~~A~~~~~~~~ 151 (461)
+..+|.+.|++++|.+.|+...
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~ 106 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSL 106 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHH
Confidence 5555555555555555555443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.15 E-value=1e-05 Score=63.04 Aligned_cols=89 Identities=16% Similarity=0.093 Sum_probs=47.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC---cchHHHHHHHHh
Q 012539 232 LVDLYGRAGRLDEALDVINKM-PMKPHA----GAWGALLNACRMYKNTEMGELASRKLVELETKN---HGAYVLLSNIYA 303 (461)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 303 (461)
+...+...|++++|...|+++ ...|+. ..+..+..++...|++++|...++++.+..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 334444555555555555544 111221 244445555556666666666666666666555 444556666666
Q ss_pred hcCChhHHHHHHHHHHh
Q 012539 304 ESKNWDRVINVRQIMKA 320 (461)
Q Consensus 304 ~~g~~~~a~~~~~~m~~ 320 (461)
..|++++|...+++..+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666665544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.6e-05 Score=64.19 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQI 82 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 82 (461)
++..+...|...|++++|+..+++..+
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~ 37 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLL 37 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 445555555555555555555555443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=2.2e-05 Score=60.74 Aligned_cols=92 Identities=12% Similarity=-0.102 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 012539 57 WNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK 136 (461)
Q Consensus 57 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 136 (461)
+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++++++.. +.+...+..+...|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3344444555555555555555554432 1134444444444555555555555555544443 2233344444444444
Q ss_pred cCCHHHHHHHHHhc
Q 012539 137 CGNMNKAMDFFWGM 150 (461)
Q Consensus 137 ~g~~~~A~~~~~~~ 150 (461)
.|++++|...|++.
T Consensus 98 ~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 98 EHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 44444444444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.11 E-value=3.2e-05 Score=75.04 Aligned_cols=95 Identities=15% Similarity=0.099 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHh
Q 012539 226 LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303 (461)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 303 (461)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...|+++.+++|.+..++..+..++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 457778888899999999999988887 3334 56688888899999999999999999999999999999999999999
Q ss_pred hcCChhHHHH-HHHHHHh
Q 012539 304 ESKNWDRVIN-VRQIMKA 320 (461)
Q Consensus 304 ~~g~~~~a~~-~~~~m~~ 320 (461)
+.++++++.+ .++.|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999988774 5555543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.11 E-value=1.3e-05 Score=64.53 Aligned_cols=62 Identities=5% Similarity=-0.070 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhc-------cCCCcchH----HHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 260 AWGALLNACRMYKNTEMGELASRKLVEL-------ETKNHGAY----VLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 260 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
.|..+..++...|++++|+..+++++++ +|++..+| .....++...|++++|+..|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7788888888888888888888888888 99888888 89999999999999999999888663
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.10 E-value=3.5e-05 Score=62.15 Aligned_cols=136 Identities=11% Similarity=0.036 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHH
Q 012539 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR-PN----EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYG 230 (461)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 230 (461)
.++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++...+...-.++
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----- 84 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD----- 84 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-----
Confidence 35566666666677777777777666542100 11 123444444555555555555555544321100000
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCC------CcchHHHHHHHHh
Q 012539 231 CLVDLYGRAGRLDEALDVINKMPMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETK------NHGAYVLLSNIYA 303 (461)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~ 303 (461)
.+ ....+..+...+...|++++|...+++..+..+. ...++..+..+|.
T Consensus 85 ------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 85 ------------------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------------------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 00 0224444555566666666666666666543211 1346677888888
Q ss_pred hcCChhHHHHHHHHHHh
Q 012539 304 ESKNWDRVINVRQIMKA 320 (461)
Q Consensus 304 ~~g~~~~a~~~~~~m~~ 320 (461)
..|++++|.+.+++..+
T Consensus 141 ~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 88888888888877654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.07 E-value=9.6e-06 Score=79.10 Aligned_cols=112 Identities=12% Similarity=0.060 Sum_probs=52.9
Q ss_pred hcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 012539 202 VVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGE 278 (461)
Q Consensus 202 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~ 278 (461)
..|++++|...+++.++. .| +...+..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|.
T Consensus 18 ~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 344444444444444321 22 2344444444444555555555444444 2222 2335555555555555666666
Q ss_pred HHHHHHhhccCCCcchHHHHHHH--HhhcCChhHHHHHHH
Q 012539 279 LASRKLVELETKNHGAYVLLSNI--YAESKNWDRVINVRQ 316 (461)
Q Consensus 279 ~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 316 (461)
..++++.+..|.+..++..+..+ +.+.|++++|.+.++
T Consensus 95 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666665565555555555554 555555666655554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.04 E-value=7.4e-05 Score=57.96 Aligned_cols=94 Identities=13% Similarity=0.018 Sum_probs=52.5
Q ss_pred HHHhhcCcHHHHHHHHHHhhhhcCCccC-h---hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 012539 198 RGCCVVGLVEEGREHFDSMRREYGIEPW-L---EHYGCLVDLYGRAGRLDEALDVINKM-PMKPH----AGAWGALLNAC 268 (461)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~ 268 (461)
..+...|++++|...|+.+.+. .|+ . ..+..+...|.+.|++++|...|++. ...|+ ...+..+..++
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3444455555555555555432 121 1 34445555556666666666655554 11222 33455566667
Q ss_pred HhcCChHHHHHHHHHHhhccCCCcch
Q 012539 269 RMYKNTEMGELASRKLVELETKNHGA 294 (461)
Q Consensus 269 ~~~~~~~~a~~~~~~~~~~~p~~~~~ 294 (461)
...|++++|...++++.+..|+++..
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 77777777777777777777766543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.9e-05 Score=64.50 Aligned_cols=63 Identities=10% Similarity=0.046 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 259 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
..|..+..++...|++++|...++++++++|.++.+|..++.+|...|++++|...+++..+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 467777778888888999999999988888888888888899999999999998888887654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.03 E-value=5e-06 Score=63.88 Aligned_cols=61 Identities=10% Similarity=0.054 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 260 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
.|..+...+...|++++|...++++.+..|+++.++..+..+|...|++++|...+++..+
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555555555666665555555543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.00 E-value=4e-05 Score=72.01 Aligned_cols=136 Identities=9% Similarity=-0.011 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHH
Q 012539 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVD 234 (461)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 234 (461)
..|..+...+.+.|++++|++.|++..+. .|+.. ..... .... ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHH---HHHHHHHHHHHHHHH
Confidence 34666666777777777777777766542 01000 00000 0010 1222 3567888899
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHH
Q 012539 235 LYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVI 312 (461)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 312 (461)
+|.+.|++++|...+++. ...| +...|..+..++...|++++|...++++.++.|.+...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 5555 45688888889999999999999999999999999989999999888888777765
Q ss_pred H
Q 012539 313 N 313 (461)
Q Consensus 313 ~ 313 (461)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.94 E-value=2.5e-05 Score=62.82 Aligned_cols=70 Identities=19% Similarity=0.160 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCHH-HH----HHHHHHHHhcCChHHHHHHHHHHhhccCCCcch
Q 012539 228 HYGCLVDLYGRAGRLDEALDVINKM--------PMKPHAG-AW----GALLNACRMYKNTEMGELASRKLVELETKNHGA 294 (461)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~~-~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 294 (461)
.|..+..++.+.|++++|+..+++. .+.|+.. .| .....++...|++++|+..|++++++.|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 4555555555555555555555444 3377654 78 888899999999999999999999999988755
Q ss_pred HHH
Q 012539 295 YVL 297 (461)
Q Consensus 295 ~~~ 297 (461)
+.-
T Consensus 139 ~~~ 141 (159)
T 2hr2_A 139 TPG 141 (159)
T ss_dssp CTT
T ss_pred HHH
Confidence 433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.94 E-value=2.7e-05 Score=72.22 Aligned_cols=148 Identities=9% Similarity=-0.037 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHH
Q 012539 155 VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234 (461)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 234 (461)
...|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 345677778888889999999999988763 454332 233444444433221 136777888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHH-hhcCChhHH
Q 012539 235 LYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIY-AESKNWDRV 311 (461)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a 311 (461)
+|.+.|++++|...+++. ...| +...|..+..++...|++++|...|+++.++.|.+..++..|..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999988888876 3344 5568888888889999999999999999999888888888877773 455667778
Q ss_pred HHHHHHHHhCC
Q 012539 312 INVRQIMKAKG 322 (461)
Q Consensus 312 ~~~~~~m~~~g 322 (461)
.+.++.|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88888876543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.94 E-value=5.6e-05 Score=73.42 Aligned_cols=124 Identities=11% Similarity=-0.022 Sum_probs=97.3
Q ss_pred HHhhcCcHHHHHHHHHHhhhhcC--Cc---cC-hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCHH-HHH
Q 012539 199 GCCVVGLVEEGREHFDSMRREYG--IE---PW-LEHYGCLVDLYGRAGRLDEALDVINKM---------PMKPHAG-AWG 262 (461)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~--~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~ 262 (461)
.+..+|++++|+.++++.++... +. |+ ..+++.|..+|...|++++|+.++++. +..|+.. +++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35578999999998887765321 12 22 467888999999999999999888776 3345554 788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhh-----ccCCCcc---hHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 263 ALLNACRMYKNTEMGELASRKLVE-----LETKNHG---AYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 263 ~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
.|...|...|++++|+.+++++.+ ++|+.+. +...|..++...+++++|..++.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999875 3566543 45678888899999999999999998753
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.93 E-value=1.6e-05 Score=73.88 Aligned_cols=113 Identities=10% Similarity=-0.079 Sum_probs=87.0
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 012539 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY 271 (461)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 271 (461)
.+..+...+...|++++|...|...++. .|+.. .+...|+.+++...+. ...|..+..++...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence 4556666777888899999888887643 33322 1233444444444332 23788888889999
Q ss_pred CChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 272 KNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 272 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
|++++|...++++++++|.+..+|..+..+|...|++++|...+++..+.
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.92 E-value=8.5e-05 Score=69.77 Aligned_cols=119 Identities=10% Similarity=-0.058 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhCCC----------------C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012539 24 VCQTAMISACAKCGDVDLARKMFDEMPE----------------R---DPIAWNAMLAGYAQCGKSREALHLFHLMQIHD 84 (461)
Q Consensus 24 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----------------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 84 (461)
..|..+...+.+.|++++|+..|++..+ . +...|+.+..+|.+.|++++|++.+++.++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3466677777788888888877776543 1 23456666666666666666666666666532
Q ss_pred CCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHH
Q 012539 85 VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAM 144 (461)
Q Consensus 85 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 144 (461)
+.+...+..+..++...|++++|...++++.+.. +.+..++..+..++.+.++.+++.
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1244556666666666666666666666666553 334445555555555555555443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0001 Score=71.40 Aligned_cols=142 Identities=11% Similarity=-0.019 Sum_probs=84.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 012539 53 DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVD 132 (461)
Q Consensus 53 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 132 (461)
....|..+...|.+.|++++|+..|++..+. .|+...+ . -+...+.- +....+|..+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~~~--------~~~~~~~~nla~ 325 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKASE--------SFLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHHHH--------HHHHHHHHHHHH
Confidence 3457888888888999999999999888763 2221000 0 00000000 011345556677
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHH
Q 012539 133 MYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEE 208 (461)
Q Consensus 133 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~ 208 (461)
+|.+.|++++|+..|++..+ .+..+|..+..+|...|++++|+..|++..+. .|+ ...+..+..++...++.++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776552 35667777777777777777777777777663 343 4455566666666676666
Q ss_pred HH-HHHHHhh
Q 012539 209 GR-EHFDSMR 217 (461)
Q Consensus 209 a~-~~~~~~~ 217 (461)
+. ..+..|.
T Consensus 404 a~~~~~~~~f 413 (457)
T 1kt0_A 404 RDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 54 3445443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0011 Score=65.76 Aligned_cols=167 Identities=7% Similarity=-0.046 Sum_probs=101.9
Q ss_pred HHHHHHHHhcCC---CCHHHHHHHHHHHHhCCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC--c
Q 012539 141 NKAMDFFWGMKE---RNVYTWTSVIGGLAMNGA----------GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG--L 205 (461)
Q Consensus 141 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~ 205 (461)
++|.+.++.+.. .+..+|+.--..+...|+ ++++++.++++.+.. +-+..+|..-.-++.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccccc
Confidence 344555554442 234455555444444444 566666666665542 223455555455555555 5
Q ss_pred HHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------
Q 012539 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAG-RLDEALDVINKM-PMKP-HAGAWGALLNACRMY----------- 271 (461)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----------- 271 (461)
++++.+.++.+.+. -+-+...|+.-...+.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 125 ~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 56666666666542 1223455555555555666 666676666666 3333 444666655554442
Q ss_pred ---CChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhH
Q 012539 272 ---KNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR 310 (461)
Q Consensus 272 ---~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 310 (461)
+.++++.+.+++++..+|.+..+|..+...+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999988887544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00021 Score=58.07 Aligned_cols=110 Identities=14% Similarity=0.032 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC------CCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHH
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLFHLMQIHD------VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLG 127 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 127 (461)
+..+......+.+.|++++|+..|.+....- -.|+...+ ..+ -+.+..++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~----~~~~~~~~ 66 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VEL----DRKNIPLY 66 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHH----HHTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHH----HHHHHHHH
Confidence 4466777777778888888888777765520 00111000 000 02234456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 012539 128 TALVDMYSKCGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN 189 (461)
Q Consensus 128 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 189 (461)
..+..+|.+.|++++|+..++... ..+..+|..+..+|...|++++|+..|++.... .|+
T Consensus 67 ~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~ 129 (162)
T 3rkv_A 67 ANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPA 129 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGG
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCC
Confidence 667777777777777777776654 235667777777777777777777777777663 454
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.83 E-value=2.1e-05 Score=60.34 Aligned_cols=89 Identities=16% Similarity=0.119 Sum_probs=48.6
Q ss_pred CcHHHHHHHHHHhhhhcCC-cc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 012539 204 GLVEEGREHFDSMRREYGI-EP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGEL 279 (461)
Q Consensus 204 g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~ 279 (461)
|++++|...|++.++. +. .| +...+..+...|...|++++|...|++. ...| +...+..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4455555555554421 10 12 2445555556666666666666666555 2223 34456666666777777777777
Q ss_pred HHHHHhhccCCCcc
Q 012539 280 ASRKLVELETKNHG 293 (461)
Q Consensus 280 ~~~~~~~~~p~~~~ 293 (461)
.++++.+..|.++.
T Consensus 83 ~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 83 LLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHCCCHH
T ss_pred HHHHHHHhCCCcHH
Confidence 77777777776653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00019 Score=69.64 Aligned_cols=93 Identities=10% Similarity=-0.029 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC----------CC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHc---CCCCC--
Q 012539 126 LGTALVDMYSKCGNMNKAMDFFWGMKE----------RN-VYTWTSVIGGLAMNGAGEKSLELFSLMKQA---GVRPN-- 189 (461)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~-- 189 (461)
+++.|...|...|++++|+.++++... |+ ..+++.|...|...|++++|+.++++..+. -+-||
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 444455555555555555554444321 11 235555666666666666666666655331 12222
Q ss_pred --HHHHHHHHHHHhhcCcHHHHHHHHHHhhh
Q 012539 190 --EVTFVSVLRGCCVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 190 --~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (461)
..+...+-.++...+..++|+.+|..+.+
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334444555667777777777777654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00016 Score=53.56 Aligned_cols=65 Identities=18% Similarity=0.101 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 257 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
+...|..+...+...|++++|+..++++.+.+|.++.+|..+..+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45678888888999999999999999999999999999999999999999999999999987653
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.71 E-value=6.5e-05 Score=56.46 Aligned_cols=90 Identities=8% Similarity=-0.034 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC------cchHHH
Q 012539 226 LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKN------HGAYVL 297 (461)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~ 297 (461)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++.++.|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 455666777777888888888877776 2233 55677778888888899999999999998888887 556666
Q ss_pred HHHHHhhcCChhHHHHHH
Q 012539 298 LSNIYAESKNWDRVINVR 315 (461)
Q Consensus 298 l~~~~~~~g~~~~a~~~~ 315 (461)
+..++...|+++.|.+.+
T Consensus 84 ~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHhHhhhHhHH
Confidence 666666666655554433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.68 E-value=5e-05 Score=57.11 Aligned_cols=95 Identities=16% Similarity=0.010 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc------hHHH
Q 012539 54 PIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMT------VTLG 127 (461)
Q Consensus 54 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~ 127 (461)
...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|...+...++.. +.+ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHH
Confidence 3455666666666666666666666666542 2245556666666666666666666666666543 112 3334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc
Q 012539 128 TALVDMYSKCGNMNKAMDFFWGM 150 (461)
Q Consensus 128 ~~li~~~~~~g~~~~A~~~~~~~ 150 (461)
..+..++...|+.+.|...|+++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHhHhhhHhHHHHh
Confidence 44555555555555554444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00024 Score=51.01 Aligned_cols=80 Identities=28% Similarity=0.291 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHh
Q 012539 226 LEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYA 303 (461)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 303 (461)
...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++.+..|.++.++..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345666666777777777777777665 2223 45577777777888888888888888888888888878877777766
Q ss_pred hc
Q 012539 304 ES 305 (461)
Q Consensus 304 ~~ 305 (461)
..
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00017 Score=54.84 Aligned_cols=77 Identities=8% Similarity=-0.041 Sum_probs=59.7
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 245 ALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 245 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
|...|++. ...| +...|..+...+...|++++|...++++.+.+|.+..+|..+..+|...|++++|...+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44445444 3344 45577777778888888888888888888888888888888888898999999999888877653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0033 Score=49.46 Aligned_cols=109 Identities=7% Similarity=-0.067 Sum_probs=59.8
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHH
Q 012539 69 KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK----CGNMNKAM 144 (461)
Q Consensus 69 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 144 (461)
++++|++.|++..+.| .|+.. +...+...+..+.|...+.+..+.| ++..+..|..+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666655 22222 4444445555566666666666554 33444555555655 55666666
Q ss_pred HHHHhcCC-CCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcC
Q 012539 145 DFFWGMKE-RNVYTWTSVIGGLAM----NGAGEKSLELFSLMKQAG 185 (461)
Q Consensus 145 ~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 185 (461)
+.|++..+ .++.++..|...|.. .++.++|++.|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66655442 345555555555555 555556666555555543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0014 Score=46.78 Aligned_cols=79 Identities=15% Similarity=0.064 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 012539 55 IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMY 134 (461)
Q Consensus 55 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 134 (461)
..|..+...+...|++++|+..|++..+.. +.+..++..+..++...|++++|...+.+..+.. +.+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555555555566666666555555432 1234445555555555555555555555555543 23334444444444
Q ss_pred H
Q 012539 135 S 135 (461)
Q Consensus 135 ~ 135 (461)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0014 Score=51.67 Aligned_cols=88 Identities=10% Similarity=-0.017 Sum_probs=43.5
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhccCCCcchHHHHHHHHhh----c
Q 012539 234 DLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRM----YKNTEMGELASRKLVELETKNHGAYVLLSNIYAE----S 305 (461)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~ 305 (461)
.+|...+.+++|.++|++.....++..+..|-..|.. .++.++|...+++..+. .++.++..|..+|.. .
T Consensus 33 ~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~ 110 (138)
T 1klx_A 33 LVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVV 110 (138)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCC
Confidence 3333333344444444433212233344444444443 45555555555555544 234455666666666 5
Q ss_pred CChhHHHHHHHHHHhCCC
Q 012539 306 KNWDRVINVRQIMKAKGV 323 (461)
Q Consensus 306 g~~~~a~~~~~~m~~~g~ 323 (461)
+++++|.+.+++..+.|.
T Consensus 111 ~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 111 KNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp CCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHCCC
Confidence 666666666666665554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0001 Score=59.12 Aligned_cols=49 Identities=14% Similarity=0.105 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHhhccCCCcchHHHHHHHHhhcC-----------ChhHHHHHHHHHHhCC
Q 012539 274 TEMGELASRKLVELETKNHGAYVLLSNIYAESK-----------NWDRVINVRQIMKAKG 322 (461)
Q Consensus 274 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~m~~~g 322 (461)
+++|+..|+++++++|++..+|..+.++|...| ++++|++.|++..+..
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 679999999999999999999999999999875 8999999999987753
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0012 Score=47.91 Aligned_cols=69 Identities=17% Similarity=0.108 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHhcCC---hHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCc
Q 012539 256 PHAGAWGALLNACRMYKN---TEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324 (461)
Q Consensus 256 p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 324 (461)
+++..+..+..++...++ .++|..+++++.+.+|+++.+...+...+.+.|++++|+..|+++.+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 466677777777654444 799999999999999999999999999999999999999999999886543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0003 Score=67.17 Aligned_cols=116 Identities=7% Similarity=0.083 Sum_probs=86.8
Q ss_pred HHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhc-----cCCC---cch
Q 012539 233 VDLYGRAGRLDEALDVINKM---------PMKPHA-GAWGALLNACRMYKNTEMGELASRKLVEL-----ETKN---HGA 294 (461)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~p~~---~~~ 294 (461)
+.-+.+.|++++|+.++++. +..|+. .+++.+...|...|++++|+.+++++++. .|.. ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566778889988888765 112322 37888888899999999999999988753 3443 347
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCccCCcccEEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 012539 295 YVLLSNIYAESKNWDRVINVRQIMKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLK 366 (461)
Q Consensus 295 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 366 (461)
++.|..+|...|++++|..++++..+---. .-...||...+.+.++.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999987652110 112479999999988888887775
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.015 Score=57.73 Aligned_cols=165 Identities=13% Similarity=-0.041 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHhccCC----------HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 012539 70 SREALHLFHLMQIHDVKL-NEVSMVSVLSACTHLGA----------LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG 138 (461)
Q Consensus 70 ~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 138 (461)
.++|++.++++... .| +...|+.--.++...++ ++++...++.+++.. +-+..+|+.-.-.+.+.|
T Consensus 45 ~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 34566666666663 23 33345544444444444 566666666666554 344555555555555566
Q ss_pred --CHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc---------
Q 012539 139 --NMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNG-AGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV--------- 203 (461)
Q Consensus 139 --~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--------- 203 (461)
+++++++.++.+.+ ++..+|+.....+.+.| .++++++.++++.+.. +-|...|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 45666666666553 35566666666666666 5666666666665532 22344554444433331
Q ss_pred -----CcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCC
Q 012539 204 -----GLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGR 241 (461)
Q Consensus 204 -----g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 241 (461)
+.++++.+.+..++.. .| +...|..+-..+.+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~---~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHH---CSSCSHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHHHHhh---CCCCccHHHHHHHHHhcCCC
Confidence 4456666666655532 33 45556555555555554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0011 Score=50.17 Aligned_cols=75 Identities=9% Similarity=0.020 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 108 GRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 108 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
+...+..+++.. +.+...+..+...|...|++++|...|++... .+...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444433 33444555555555555555555555554431 2344555555555555555555555555443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0017 Score=47.83 Aligned_cols=59 Identities=15% Similarity=0.061 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012539 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMK 182 (461)
Q Consensus 124 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 182 (461)
..++..+...|.+.|++++|+..|++..+ .+..+|..+..+|...|++++|++.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444455555555555555555554431 233444555555555555555555555443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00059 Score=54.68 Aligned_cols=56 Identities=9% Similarity=0.060 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCC---CCHHHHHHHHHHHHhC-----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012539 141 NKAMDFFWGMKE---RNVYTWTSVIGGLAMN-----------GAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198 (461)
Q Consensus 141 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 198 (461)
++|+..|++..+ .+..+|..+..+|... |++++|++.|++..+ +.|+...|...+.
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 344444444431 2334455555555444 467778888887777 4666655544443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.049 Score=56.46 Aligned_cols=42 Identities=12% Similarity=0.099 Sum_probs=20.8
Q ss_pred HHcCCHHHHHH-HHhhCCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 012539 34 AKCGDVDLARK-MFDEMPERDPIAWNAMLAGYAQCGKSREALHLF 77 (461)
Q Consensus 34 ~~~g~~~~A~~-~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 77 (461)
...+++++|.+ ++..++.+ .....++..+.+.|.+++|+++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~~~--~~~~~~~~~l~~~~~~~~a~~~~ 652 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEGK--DSLTKIARFLEGQEYYEEALNIS 652 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCCH--HHHHHHHHHHHHTTCHHHHHHHC
T ss_pred HHhCCHHHHHHHHHhcCCch--HHHHHHHHHHHhCCChHHheecC
Confidence 34566666666 44333301 11245555555566666655443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.001 Score=63.51 Aligned_cols=83 Identities=11% Similarity=0.031 Sum_probs=64.7
Q ss_pred hcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhc-----cCCC---cchHHHHH
Q 012539 238 RAGRLDEALDVINKM---------PMKPHAG-AWGALLNACRMYKNTEMGELASRKLVEL-----ETKN---HGAYVLLS 299 (461)
Q Consensus 238 ~~g~~~~A~~~~~~~---------~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~p~~---~~~~~~l~ 299 (461)
..|++++|+.++++. +..|+.. +++.|..+|...|++++|+.++++++++ +|+. ..+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346778887777654 2234443 7888899999999999999999998753 3443 34788999
Q ss_pred HHHhhcCChhHHHHHHHHHHh
Q 012539 300 NIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 300 ~~~~~~g~~~~a~~~~~~m~~ 320 (461)
.+|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998765
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.08 Score=40.43 Aligned_cols=141 Identities=8% Similarity=0.034 Sum_probs=104.3
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHH
Q 012539 165 LAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244 (461)
Q Consensus 165 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 244 (461)
+...|..++..++..+.... .+..-|+.+|--....-+-+-..+.++.+-+-+.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 34567788888888887653 35556666665555556666666666665432222 34666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCc
Q 012539 245 ALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324 (461)
Q Consensus 245 A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 324 (461)
....+-.++ .+.......+..+...|+.+.-.+++..+...++.++.....+.++|.+.|+..+|.+++.+..+.|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666666664 355666777888899999999999999987777888889999999999999999999999999999985
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.034 Score=51.07 Aligned_cols=138 Identities=13% Similarity=-0.007 Sum_probs=69.7
Q ss_pred CCCHHHHHHHHHHHH--hCCC---hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhh---cC-----cHHHHHHHHHHhh
Q 012539 152 ERNVYTWTSVIGGLA--MNGA---GEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCV---VG-----LVEEGREHFDSMR 217 (461)
Q Consensus 152 ~~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~---~g-----~~~~a~~~~~~~~ 217 (461)
..+..+|...+.+.. ..+. ..+|+.+|++..+ ..|+ ...+..+.-++.. .+ ........+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 346677777766543 3333 4788999999888 4666 3444444333321 00 0111111111111
Q ss_pred hhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC
Q 012539 218 REYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKN 291 (461)
Q Consensus 218 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 291 (461)
.....+.++.+|..+...+...|++++|...++++ ...|+...|..+...+...|+.++|...++++..++|..
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 00011334555555555555556666666666555 233554455444445566666666666666666666654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.078 Score=43.01 Aligned_cols=104 Identities=10% Similarity=0.067 Sum_probs=72.1
Q ss_pred HHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHH
Q 012539 31 SACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRW 110 (461)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 110 (461)
....++|+++.|.++-+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456789999999988776 4677899999999999999999999987643 3344445556777776665
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 012539 111 AHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK 151 (461)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 151 (461)
+-+.....| -++.....+.-.|+++++.++|.+..
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 555555544 22333444556677777777766544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0068 Score=57.75 Aligned_cols=92 Identities=15% Similarity=0.023 Sum_probs=69.9
Q ss_pred hcCcHHHHHHHHHHhhhhcC--CccC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHH
Q 012539 202 VVGLVEEGREHFDSMRREYG--IEPW----LEHYGCLVDLYGRAGRLDEALDVINKM---------PMKPHAG-AWGALL 265 (461)
Q Consensus 202 ~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~ll 265 (461)
..|++++|..++++.++... +.|+ ..+++.|..+|...|++++|+.++++. +..|+.. +++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45788899888887765321 2222 467888999999999999999888776 3346555 788899
Q ss_pred HHHHhcCChHHHHHHHHHHhh-----ccCCCcc
Q 012539 266 NACRMYKNTEMGELASRKLVE-----LETKNHG 293 (461)
Q Consensus 266 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~ 293 (461)
..|...|++++|+.+++++.+ ++|+.+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 999999999999999999875 3566553
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.011 Score=56.26 Aligned_cols=98 Identities=12% Similarity=-0.032 Sum_probs=72.1
Q ss_pred HHHHhhcCcHHHHHHHHHHhhhhcC--CccC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCHH-H
Q 012539 197 LRGCCVVGLVEEGREHFDSMRREYG--IEPW----LEHYGCLVDLYGRAGRLDEALDVINKM---------PMKPHAG-A 260 (461)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~ 260 (461)
+..+...|++++|..++++.++... +.|+ ..+++.|..+|...|++++|+.++++. +..|+.. +
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4455677888888888887764321 2222 457888888899999999998888766 3345544 7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhh-----ccCCCcch
Q 012539 261 WGALLNACRMYKNTEMGELASRKLVE-----LETKNHGA 294 (461)
Q Consensus 261 ~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~ 294 (461)
++.|...|...|++++|+.+++++.+ .+|+.+.+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 88888889999999999999999875 45666543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.052 Score=56.32 Aligned_cols=116 Identities=11% Similarity=-0.052 Sum_probs=71.3
Q ss_pred cCCchHHHH-HHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012539 5 LGCLGYCQK-VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIH 83 (461)
Q Consensus 5 ~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 83 (461)
.|++++|.+ ++..+. +......++..+.+.|.++.|.++.+. .. .-.....+.|++++|+++.+.+
T Consensus 612 ~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~~---~~f~~~l~~~~~~~A~~~~~~~--- 678 (814)
T 3mkq_A 612 RGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-----QD---QKFELALKVGQLTLARDLLTDE--- 678 (814)
T ss_dssp TTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-----HH---HHHHHHHHHTCHHHHHHHHTTC---
T ss_pred hCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-----cc---hheehhhhcCCHHHHHHHHHhh---
Confidence 466777776 554332 122337777778888888888876532 11 1123346678888887775432
Q ss_pred CCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 012539 84 DVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145 (461)
Q Consensus 84 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 145 (461)
.+...|..+...+.+.++++.|++.|..+.. +..+...|...|+.+...+
T Consensus 679 ---~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 679 ---SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ---CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 3567788888888888888888888776532 2234444555555554443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0053 Score=44.63 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=24.4
Q ss_pred HHhcCChHHHHHHHHHHhhccCCCcc-hHHHHHHHHhhcCChhHHHHHHHHHH
Q 012539 268 CRMYKNTEMGELASRKLVELETKNHG-AYVLLSNIYAESKNWDRVINVRQIMK 319 (461)
Q Consensus 268 ~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (461)
+...|++++|...++++.+..|.++. ++..+..+|...|++++|.+.+++..
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444444444 44444444444444444444444443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0095 Score=43.23 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=43.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchH
Q 012539 232 LVDLYGRAGRLDEALDVINKM-PMKP-HAG-AWGALLNACRMYKNTEMGELASRKLVELETKNHGAY 295 (461)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 295 (461)
....+.+.|++++|...+++. ...| +.. .|..+..++...|++++|...++++.+.+|.+..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 344566677777777777665 2233 345 666677777778888888888888888888776555
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.041 Score=50.54 Aligned_cols=72 Identities=8% Similarity=0.057 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHH
Q 012539 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHY 229 (461)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 229 (461)
.+..+|.++...+...|++++|+..+++....+ |+...|..+...+.-.|+.++|.+.+.... .+.|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al---rL~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF---NLRPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHSCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCcChH
Confidence 355666666655555677777777777776643 565555555556666777777777776654 335554444
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.023 Score=44.90 Aligned_cols=65 Identities=8% Similarity=-0.029 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHhhcc-C-CCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 256 PHAGAWGALLNACRMYK---NTEMGELASRKLVELE-T-KNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 256 p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
++..+...+..++.+.+ +.++++.+++.+.+.+ | .+...+..|..+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45555555555666655 4556777777776666 4 2345666677777777777777777777655
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.11 Score=42.23 Aligned_cols=129 Identities=14% Similarity=0.126 Sum_probs=83.0
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHH
Q 012539 132 DMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE 211 (461)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 211 (461)
+...++|+++.|.++.+.+ .+...|..|......+|+++-|.+.|.+... |..+.-.|.-.|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3456788888888887766 4677888888888888888888888887643 2334445556677766555
Q ss_pred HHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 012539 212 HFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKL 284 (461)
Q Consensus 212 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 284 (461)
+-+....+ | -++.....+.-.|+++++.+++.+.+.-|.... ....+|-.+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 54443322 1 244555667778888888888887753232211 123466666777666655
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.86 E-value=1.6e-06 Score=81.05 Aligned_cols=263 Identities=11% Similarity=0.098 Sum_probs=168.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhc
Q 012539 22 DVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH 101 (461)
Q Consensus 22 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 101 (461)
.+.+|+.|..++.+.+.+.+|++-| +...|+..|..+|.+..+.|.+++-+..+.-.++..- ++..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 4568888999998888888887765 4566778888899999999999988887765544322 33444577888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 012539 102 LGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLM 181 (461)
Q Consensus 102 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 181 (461)
.+++.+-++++. .|+..-...+.+-+...|.++.|.-+|..+.. |.-|..++.+.|++..|.+.-++
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArK- 195 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARK- 195 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTT-
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHh-
Confidence 888765444321 35555556678888888888888877776653 34445556666777666654332
Q ss_pred HHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHH
Q 012539 182 KQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PM-KPHAG 259 (461)
Q Consensus 182 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~ 259 (461)
.-+..||-.+-.+|...+.+..|...--.++ ..+.....++..|-+.|.+++-+.+++.. +. +....
T Consensus 196 -----Ans~ktWKeV~~ACvd~~EfrLAqicGLniI------vhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmG 264 (624)
T 3lvg_A 196 -----ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMG 264 (624)
T ss_dssp -----CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH------CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHH
T ss_pred -----cCChhHHHHHHHHHhCchHHHHHHHhcchhc------ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHH
Confidence 2245677777778888777665544322222 12223345677788888888888777765 33 34566
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHh-hcc-CC------CcchHHHHHHHHhhcCChhHHHH
Q 012539 260 AWGALLNACRMYKNTEMGELASRKLV-ELE-TK------NHGAYVLLSNIYAESKNWDRVIN 313 (461)
Q Consensus 260 ~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~-p~------~~~~~~~l~~~~~~~g~~~~a~~ 313 (461)
.|+-|.-.|.+.. ++...+.++..- +++ |+ ....|.-++..|.+-..|+.|..
T Consensus 265 mFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 265 MFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 7777777777663 444333333322 233 22 23466677777777777776543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.045 Score=40.31 Aligned_cols=70 Identities=14% Similarity=0.005 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHH
Q 012539 229 YGCLVDLYGRAGRLDEALDVINKM-----P----MKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLL 298 (461)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 298 (461)
+-.|...+.+.|+++.|...|+.. + ..+...++..|..++.+.|+++.|...++++.++.|.+..+...+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 334455555555555555555443 0 113345777888888899999999999999999999886554433
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.066 Score=38.54 Aligned_cols=67 Identities=9% Similarity=-0.029 Sum_probs=40.3
Q ss_pred cChhHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhccCC
Q 012539 224 PWLEHYGCLVDLYGRAGR---LDEALDVINKM-PMKPHA-GAWGALLNACRMYKNTEMGELASRKLVELETK 290 (461)
Q Consensus 224 p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 290 (461)
+++..+..+..++...++ .++|..++++. ...|+. ..+..+...+...|++++|+..|+++.+.+|+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 345555556665543333 46666666665 334433 34555555577777777777777777777776
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.079 Score=46.74 Aligned_cols=87 Identities=11% Similarity=0.123 Sum_probs=66.6
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChHHHHHHHHHHhhccCCC-cchHHHHHHHHhhc-CChhH
Q 012539 242 LDEALDVINKM-PMKPH---AGAWGALLNACRM-----YKNTEMGELASRKLVELETKN-HGAYVLLSNIYAES-KNWDR 310 (461)
Q Consensus 242 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 310 (461)
...|...+++. .+.|+ ...|..|...|.. .|+.+.|.+.|+++++++|+. ..++......++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555555 44565 4467777777777 489999999999999999974 88999999999884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 012539 311 VINVRQIMKAKGVKKLPG 328 (461)
Q Consensus 311 a~~~~~~m~~~g~~~~~~ 328 (461)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999988866553343
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.96 E-value=0.3 Score=38.54 Aligned_cols=26 Identities=19% Similarity=-0.066 Sum_probs=14.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 158 WTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
+..|.-+|.+.|++++|.+.++.+.+
T Consensus 74 lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 74 VFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33444455556666666666666555
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=4.4 Score=40.26 Aligned_cols=54 Identities=9% Similarity=0.006 Sum_probs=27.5
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCC-CHHH-HHHHHHHHHhcCChHHHHHHHHHHhh
Q 012539 233 VDLYGRAGRLDEALDVINKMPMKP-HAGA-WGALLNACRMYKNTEMGELASRKLVE 286 (461)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~~~~p-~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~ 286 (461)
+..-.+.|+++.|...|+.|+..+ +..- ..=+..++...|+.++|..+|+.+.+
T Consensus 292 ~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 292 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 333345566666666666664322 1111 11222344556666666666666653
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.41 E-value=0.33 Score=36.81 Aligned_cols=95 Identities=17% Similarity=0.041 Sum_probs=52.2
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHH---HHHHHHhC-CCC-C-CHH-HHHHHHHHH
Q 012539 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE---ALDVINKM-PMK-P-HAG-AWGALLNAC 268 (461)
Q Consensus 196 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-p-~~~-~~~~ll~~~ 268 (461)
++..-.....+..+.+-|...... | .|+..+--.+..++.+..+..+ +..+++++ ... | ... ....|.-++
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 333334445555666666555432 3 2555666666666666665544 66666665 211 2 111 333344446
Q ss_pred HhcCChHHHHHHHHHHhhccCCCc
Q 012539 269 RMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 269 ~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
.+.|+++.|.+.++.+++.+|.+.
T Consensus 85 yklg~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHhhhHHHHHHHHHHHHHhCCCCH
Confidence 667777777777777777777664
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.06 E-value=0.48 Score=34.57 Aligned_cols=62 Identities=6% Similarity=-0.202 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC------CCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 012539 57 WNAMLAGYAQCGKSREALHLFHLMQIHD------VKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118 (461)
Q Consensus 57 ~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 118 (461)
+..|...+.+.|++..|...|++..+.- -.+....+..+..++.+.|+++.|...++.+.+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3445555555555555555555544310 0122334444444455555555555555554443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.68 E-value=0.48 Score=41.76 Aligned_cols=117 Identities=9% Similarity=-0.057 Sum_probs=80.2
Q ss_pred HHcCCHHHHHHHHhhCCCCChh--HHHHHHH-HHHHc--CC------hHHHHHHHHHHHHCCCCcC---HHHHHHHHHHH
Q 012539 34 AKCGDVDLARKMFDEMPERDPI--AWNAMLA-GYAQC--GK------SREALHLFHLMQIHDVKLN---EVSMVSVLSAC 99 (461)
Q Consensus 34 ~~~g~~~~A~~~~~~m~~~~~~--~~~~li~-~~~~~--g~------~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~ 99 (461)
.+.++..+-...+.++...++. .|..++. .++.. |. ..+|..++++..+ +.|+ ...|..+...|
T Consensus 132 ~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY 209 (301)
T 3u64_A 132 VFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFY 209 (301)
T ss_dssp HTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHH
T ss_pred HHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHH
Confidence 4677776777777777655543 5665554 33332 33 3567777777777 3455 45777777778
Q ss_pred hcc-----CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhc-CCHHHHHHHHHhcCC
Q 012539 100 THL-----GALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC-GNMNKAMDFFWGMKE 152 (461)
Q Consensus 100 ~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~ 152 (461)
... |+.++|++.|++.++.+..-+..++....+.++.. |+.++|.+.+++...
T Consensus 210 ~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 210 AAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp HHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 774 88888888888888876433466666778888774 888888888887764
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.82 Score=46.38 Aligned_cols=52 Identities=12% Similarity=0.092 Sum_probs=49.2
Q ss_pred HHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHH
Q 012539 268 CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319 (461)
Q Consensus 268 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (461)
|...|+++.|..+.+++...-|.+-.+|..|+.+|...|+|+.|+-.+..+-
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 7788999999999999999999999999999999999999999999998873
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=92.96 E-value=2.4 Score=32.48 Aligned_cols=139 Identities=10% Similarity=-0.004 Sum_probs=79.3
Q ss_pred HcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 012539 66 QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMD 145 (461)
Q Consensus 66 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 145 (461)
-.|..++..++..+.... .+..-||-++--....-+-+-..++++.+-+. .|. ..||++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 345566666666555542 13333443333333333444333333332221 111 23455554444
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCc
Q 012539 146 FFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIE 223 (461)
Q Consensus 146 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 223 (461)
.+-.+. .+.......++.+...|+-++-.+++..+.. +.+|++.....+..||.+.|+..++.+++.++-++ |++
T Consensus 83 C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~k 157 (172)
T 1wy6_A 83 CGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GEK 157 (172)
T ss_dssp HHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hhH
Confidence 444332 2334456667778888888888888888533 25677777888888888888888888888887664 654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.86 E-value=1.1 Score=33.95 Aligned_cols=90 Identities=14% Similarity=0.041 Sum_probs=58.4
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHH---HHHHHHHhhhhcCCcc--ChhHHHHHHHHHHhcC
Q 012539 166 AMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE---GREHFDSMRREYGIEP--WLEHYGCLVDLYGRAG 240 (461)
Q Consensus 166 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g 240 (461)
........+.+.|.+....|. |+..+-..+.-++.++.+... +..++..+.+. + .| .....-.|.-++.+.|
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhh
Confidence 333445566666666655554 666666666777777765554 88888888753 2 23 2334445667888999
Q ss_pred CHHHHHHHHHhC-CCCCCH
Q 012539 241 RLDEALDVINKM-PMKPHA 258 (461)
Q Consensus 241 ~~~~A~~~~~~~-~~~p~~ 258 (461)
++++|.+.++.+ ..+|+.
T Consensus 89 ~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 89 EYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHhCCCC
Confidence 999999988887 445543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.83 E-value=5.2 Score=43.20 Aligned_cols=163 Identities=9% Similarity=0.072 Sum_probs=100.0
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHH
Q 012539 28 AMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQ 107 (461)
Q Consensus 28 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 107 (461)
.++..+.+.+..+.|.++..-.+. ++.+-..+..+|...|++++|.+.|++.-. |+..+.... .....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~~~ 884 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVLRE 884 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhhcc
Confidence 456667778888888877665554 455556778889999999999999987632 222211100 00000
Q ss_pred HHHHHHHHHHcC--CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCH----HHHHHHHHHHHhCCChHHHHHH
Q 012539 108 GRWAHVYIERNR--LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK----ERNV----YTWTSVIGGLAMNGAGEKSLEL 177 (461)
Q Consensus 108 a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~g~~~~A~~~ 177 (461)
...+.... ...-...|..++..+-+.|.++.+.++-+... ..+. ..|..+..++...|++++|...
T Consensus 885 ----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~a 960 (1139)
T 4fhn_B 885 ----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVA 960 (1139)
T ss_dssp ----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHH
T ss_pred ----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 01111111 11223456667777777787777766554322 2221 2588889999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhhcCcHHH
Q 012539 178 FSLMKQAGVRPNEVTFVSVLRGCCVVGLVEE 208 (461)
Q Consensus 178 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 208 (461)
+-.+.....+ ...+..|+...+..|..+.
T Consensus 961 L~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 961 LMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 9888764333 4566667776666665443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.72 E-value=0.68 Score=36.20 Aligned_cols=53 Identities=8% Similarity=-0.086 Sum_probs=36.7
Q ss_pred CChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCc
Q 012539 272 KNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324 (461)
Q Consensus 272 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 324 (461)
+|+++|..+|+.++.....-+..|...+.--.+.|+.+.|.+++......+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 67777777777776653333445666666667888888888888887775543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.63 E-value=3.8 Score=32.01 Aligned_cols=36 Identities=8% Similarity=0.192 Sum_probs=21.2
Q ss_pred CChhHHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCcC
Q 012539 52 RDPIAWNAMLAGYAQCGKS------REALHLFHLMQIHDVKLN 88 (461)
Q Consensus 52 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~ 88 (461)
.|..+|-..+...-+.|++ ++.+++|++.... ++|+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~ 52 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPD 52 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGG
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCcc
Confidence 3566666666666666666 6666666666553 4443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=91.41 E-value=8.3 Score=35.78 Aligned_cols=128 Identities=11% Similarity=-0.001 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCC---chHHHHHHHHHHHhc-CCHHHHHHHHHhcCC---CCHHHH---
Q 012539 90 VSMVSVLSACTHLGALDQGRWAHVYIERNR-LKM---TVTLGTALVDMYSKC-GNMNKAMDFFWGMKE---RNVYTW--- 158 (461)
Q Consensus 90 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~---~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~---~~~~~~--- 158 (461)
.....+...|.+.|+.++..+++......- .-+ .......|++.+... +..+.-.++..+..+ ..-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666665555443210 001 122334555555553 222323333332221 011112
Q ss_pred ---HHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhhcCcHHHHHHHHHHhh
Q 012539 159 ---TSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-----EVTFVSVLRGCCVVGLVEEGREHFDSMR 217 (461)
Q Consensus 159 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 217 (461)
.-++..|...|++.+|.+++.++.+.=-+.| ...+..-+..|...+++.++...+....
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1345566666666666666666654211111 1123333445555666666666665553
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.54 E-value=1.7 Score=34.64 Aligned_cols=112 Identities=9% Similarity=0.007 Sum_probs=54.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-----CCCH-------HHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHH-HHHH
Q 012539 130 LVDMYSKCGNMNKAMDFFWGMK-----ERNV-------YTWTSVIGGLAMNGAGEKSLELFSLMKQAG-VRPNEV-TFVS 195 (461)
Q Consensus 130 li~~~~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~-~~~~ 195 (461)
-+......|.++.|+-+.+-+. .+++ .++..+..++...|++..|...|++..+.. .-|... +...
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3556666777777766655433 2331 244555666777777777777777753311 111111 1111
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 012539 196 VLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMK 255 (461)
Q Consensus 196 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 255 (461)
+- ....... .....++.+.---+..+|.+.|+.++|+.+++.+|.+
T Consensus 106 ~~----~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 106 TG----NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred cc----ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 10 0000000 0012223344444667777888888888888877544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.28 E-value=1.6 Score=44.30 Aligned_cols=121 Identities=11% Similarity=-0.016 Sum_probs=72.8
Q ss_pred HHHHHHHHcCC-hHHHHHHHHHHHHCCCCcCHHH-H-HHHHHHHhccCC-HHHHHHHHHHHHHc------CCCC-c----
Q 012539 59 AMLAGYAQCGK-SREALHLFHLMQIHDVKLNEVS-M-VSVLSACTHLGA-LDQGRWAHVYIERN------RLKM-T---- 123 (461)
Q Consensus 59 ~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~t-~-~~ll~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~---- 123 (461)
.|+..+...|+ .+.|+.+|+++.... |...+ + ..++..+...++ --+|.+++.+.++. ..++ +
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 34444445556 577999999988753 33222 2 223333333332 22334444333321 1111 1
Q ss_pred ------hHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 012539 124 ------VTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLM 181 (461)
Q Consensus 124 ------~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 181 (461)
......-++.+...|+++.|+++-++... .+-.+|..|..+|...|+++.|+-.++.+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11222334556678999999999887762 46789999999999999999999888876
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=89.93 E-value=0.0025 Score=60.04 Aligned_cols=148 Identities=13% Similarity=0.118 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 012539 124 VTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203 (461)
Q Consensus 124 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 203 (461)
+.+|..|..++.+.|++.+|++.|-+ ..|+..|..+|.+..+.|.+++-+..+...++..-.|.. =+.|+-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~I--DteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV--ETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTT--THHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--HHHHHHHHHhh
Confidence 34566667777777766666655432 335555666777777777777777766665554333322 23566677776
Q ss_pred CcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCC-----------------------CCCCHHH
Q 012539 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMP-----------------------MKPHAGA 260 (461)
Q Consensus 204 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------------------~~p~~~~ 260 (461)
+++.+-.++ =-.|+..-...+.+-+...|.++.|.-+|..++ ...++.|
T Consensus 130 ~rL~elEef--------l~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 130 NRLAELEEF--------INGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp CSSSTTTST--------TSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred CcHHHHHHH--------HcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 664432221 123444445555666666666666655555441 1246668
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 012539 261 WGALLNACRMYKNTEMGELASRK 283 (461)
Q Consensus 261 ~~~ll~~~~~~~~~~~a~~~~~~ 283 (461)
|..+-.+|...+.+..|..+--.
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLn 224 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLH 224 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcch
Confidence 88888888888876666544333
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=89.65 E-value=4.2 Score=29.11 Aligned_cols=86 Identities=10% Similarity=0.100 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 104 ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 104 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
.-++|..|-+.+...+. ...+--.=+..+...|++++|..+.+...-||+..|-+|-.. +.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 46777777777776653 222222223445678999999999999999999999887654 56777777777767766
Q ss_pred cCCCCCHHHHH
Q 012539 184 AGVRPNEVTFV 194 (461)
Q Consensus 184 ~g~~p~~~~~~ 194 (461)
.| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 54 44445543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.40 E-value=22 Score=36.96 Aligned_cols=215 Identities=10% Similarity=-0.004 Sum_probs=114.8
Q ss_pred HHHcCCHHHHHHHHhhCCC----CChh--HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-------CcCHHHHHHHHHHH
Q 012539 33 CAKCGDVDLARKMFDEMPE----RDPI--AWNAMLAGYAQCGKSREALHLFHLMQIHDV-------KLNEVSMVSVLSAC 99 (461)
Q Consensus 33 ~~~~g~~~~A~~~~~~m~~----~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~p~~~t~~~ll~~~ 99 (461)
....|+.++++.+++.... .+.. .-..+.-+.+..|..+++++++.......- .+....-..+.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4467788888888887553 2222 233344456666776778887776654211 01111112222222
Q ss_pred hccCC-HHHHHHHHHHHHHcCCCCch--HHHHHHHHHHHhcCCHHHHHHHHHhcCC-CC--HHHHHHHHHHHHhCCChHH
Q 012539 100 THLGA-LDQGRWAHVYIERNRLKMTV--TLGTALVDMYSKCGNMNKAMDFFWGMKE-RN--VYTWTSVIGGLAMNGAGEK 173 (461)
Q Consensus 100 ~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~ 173 (461)
+-.|. -+++...+..++... .+.. ...-+|...|.-.|+-+....++..+.+ .+ +.-.-++.-++...|+.+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 22332 234455555555432 1111 1223455556677887777777665442 22 2223333444557889888
Q ss_pred HHHHHHHHHHcCCCCCHHHHH---HHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHH
Q 012539 174 SLELFSLMKQAGVRPNEVTFV---SVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVIN 250 (461)
Q Consensus 174 A~~~~~~m~~~g~~p~~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (461)
+..+.+.+... ..| ..-|. ++.-+|+..|+.....+++..+..+ ...++.-...+.-++...|+.+.+.++++
T Consensus 543 ~~~li~~L~~~-~dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 543 ADDLITKMLAS-DES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GHHHHHHHHHC-SCH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHhC-CCH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 88888888763 122 22333 3344677888988888788887652 22333333333334444666666666666
Q ss_pred hC
Q 012539 251 KM 252 (461)
Q Consensus 251 ~~ 252 (461)
.+
T Consensus 619 ~L 620 (963)
T 4ady_A 619 LL 620 (963)
T ss_dssp TG
T ss_pred HH
Confidence 44
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=89.36 E-value=8.2 Score=31.88 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcC
Q 012539 20 EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCG 68 (461)
Q Consensus 20 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 68 (461)
.+|..+-...+..+.+.|..+....+.+.+..+|...-...+.++.+.|
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~ 78 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG 78 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhC
Confidence 4444444444444444444333333333333444444444444444444
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.28 E-value=3.9 Score=29.21 Aligned_cols=86 Identities=13% Similarity=0.143 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012539 104 ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQ 183 (461)
Q Consensus 104 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (461)
.-++|..|-+.+...+. ...+--.=+..+...|++++|..+.+...-||+..|-+|-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 46777777777777653 22222222344667899999999999999999999988755 467888888887777776
Q ss_pred cCCCCCHHHHH
Q 012539 184 AGVRPNEVTFV 194 (461)
Q Consensus 184 ~g~~p~~~~~~ 194 (461)
.| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 45555554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.08 E-value=3.3 Score=38.51 Aligned_cols=70 Identities=9% Similarity=0.116 Sum_probs=48.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhh----hcCCccChhH
Q 012539 158 WTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR----EYGIEPWLEH 228 (461)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 228 (461)
...++..+...|++++|+..++.+... -+-+...+..++.++.+.|+..+|.+.|+...+ +.|+.|++.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 445566677788888888777777664 244677777888888888888888877776543 3466666544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.03 E-value=1.2 Score=41.51 Aligned_cols=68 Identities=13% Similarity=0.007 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh-----CCCccCCc
Q 012539 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA-----KGVKKLPG 328 (461)
Q Consensus 261 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~ 328 (461)
...++..+...|+.+++...++.+...+|-+...|..|+.+|.+.|+..+|.+.|+...+ .|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 344566677889999999999999999999988999999999999999999999888754 48877654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.91 E-value=16 Score=34.62 Aligned_cols=183 Identities=7% Similarity=0.072 Sum_probs=118.1
Q ss_pred CChHHHHHHHHHHHH-----CCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCchHHHHHHHH----HHHhc
Q 012539 68 GKSREALHLFHLMQI-----HDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN-RLKMTVTLGTALVD----MYSKC 137 (461)
Q Consensus 68 g~~~~A~~~~~~m~~-----~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~----~~~~~ 137 (461)
|++++|++.+..+.+ .+..........++..|...++++...+.+..+.+. |..+. ....+++ .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 678999988766654 234456677888999999999999988877666543 32222 2223333 22223
Q ss_pred CCHH--HHHHHHHhcCC----C---C---HHHHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHH
Q 012539 138 GNMN--KAMDFFWGMKE----R---N---VYTWTSVIGGLAMNGAGEKSLELFSLMKQA--GVRPN---EVTFVSVLRGC 200 (461)
Q Consensus 138 g~~~--~A~~~~~~~~~----~---~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~~~~~ll~~~ 200 (461)
...+ .-..+.+.... + . ......|...|...|++.+|.+++..+... |..+. ...+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3222 22333333321 1 1 123456778899999999999999998643 32222 23566677888
Q ss_pred hhcCcHHHHHHHHHHhhhhc-CCccC----hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 201 CVVGLVEEGREHFDSMRREY-GIEPW----LEHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~~-~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
...+++..|..++.++.... ...+. ...+..++..+...+++.+|.+.|.++
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 89999999999998874321 22222 345677788888899999988877665
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=88.69 E-value=7 Score=30.19 Aligned_cols=46 Identities=4% Similarity=-0.033 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhccCCC-cchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 275 EMGELASRKLVELETKN-HGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 275 ~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
.+++.+++.+.+..|.+ ......|+-++.+.|++++|.++.+.+.+
T Consensus 59 ~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 59 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34555555555544432 22344455566666666666666665544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.50 E-value=17 Score=34.40 Aligned_cols=185 Identities=9% Similarity=0.042 Sum_probs=116.9
Q ss_pred CCHHHHHHHHhhCCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCcCHHHHHHHHHHH----hcc
Q 012539 37 GDVDLARKMFDEMPE-----R----DPIAWNAMLAGYAQCGKSREALHLFHLMQI-HDVKLNEVSMVSVLSAC----THL 102 (461)
Q Consensus 37 g~~~~A~~~~~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~t~~~ll~~~----~~~ 102 (461)
|+++.|++.+-.+.+ . .......++..|...|+++...+.+..+.. .|..+.. ...++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 678888877654431 1 344677899999999999999888776654 3333222 22333332 233
Q ss_pred CCHHHHHHHHHHHHH------cC-CCC---chHHHHHHHHHHHhcCCHHHHHHHHHhcCC----C-----CHHHHHHHHH
Q 012539 103 GALDQGRWAHVYIER------NR-LKM---TVTLGTALVDMYSKCGNMNKAMDFFWGMKE----R-----NVYTWTSVIG 163 (461)
Q Consensus 103 ~~~~~a~~~~~~~~~------~~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-----~~~~~~~li~ 163 (461)
...+.... ..... .| +-. .......|...|...|++.+|..++.++.. . -+..+..-+.
T Consensus 108 ~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33332111 11111 11 001 123446789999999999999999998762 1 1356777788
Q ss_pred HHHhCCChHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC
Q 012539 164 GLAMNGAGEKSLELFSLMKQ----AGVRPN--EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW 225 (461)
Q Consensus 164 ~~~~~g~~~~A~~~~~~m~~----~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 225 (461)
.|...+++..|..++++... ....|+ ...+...+..+...+++.+|-..|.++...+....+
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d 253 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSD 253 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCC
Confidence 99999999999999998743 222232 234556667777889999998888877654333333
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.15 E-value=6.4 Score=31.32 Aligned_cols=122 Identities=11% Similarity=0.022 Sum_probs=66.8
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCC-----CCCh-------hHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCcCH-HHHH
Q 012539 28 AMISACAKCGDVDLARKMFDEMP-----ERDP-------IAWNAMLAGYAQCGKSREALHLFHLMQIHD-VKLNE-VSMV 93 (461)
Q Consensus 28 ~li~~~~~~g~~~~A~~~~~~m~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~-~t~~ 93 (461)
.-+..+...|.++.|+-+.+.+. .+++ .+...+..++...|++.+|...|++.++.. .-|.. .+..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 34556667888888877766543 1221 255667778888888888888888764321 11111 1111
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHHHHHH
Q 012539 94 SVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK--ERNVYTWTSVI 162 (461)
Q Consensus 94 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li 162 (461)
.+. ....... ......+..+---+..+|.+.|++++|+.+++.++ .+++..--+|.
T Consensus 105 ~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~La 162 (167)
T 3ffl_A 105 STG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLA 162 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHH
T ss_pred ccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHH
Confidence 110 0000000 01123344555558888899999999999999886 35555444333
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.08 E-value=3.1 Score=29.87 Aligned_cols=55 Identities=13% Similarity=0.178 Sum_probs=40.1
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHH
Q 012539 245 ALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299 (461)
Q Consensus 245 A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 299 (461)
++.-+-.+..-|++.+..+.+.+|++.+++..|.++++-+...-.+....|..++
T Consensus 32 glN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 32 GMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3333334456789999999999999999999999999988865444344566655
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.05 E-value=15 Score=33.14 Aligned_cols=168 Identities=9% Similarity=0.010 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHH----HHHHHCCCCcCHHHHHHHHHHHh
Q 012539 25 CQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLF----HLMQIHDVKLNEVSMVSVLSACT 100 (461)
Q Consensus 25 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~p~~~t~~~ll~~~~ 100 (461)
.|.++..=|.+.+++++|++++-. -...+.+.|+...|-++- +-+.+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455666677788888888887543 233455666665554443 44556678888888877777776
Q ss_pred ccCCHH-----HHHHHHHHHHHcC--CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHH
Q 012539 101 HLGALD-----QGRWAHVYIERNR--LKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEK 173 (461)
Q Consensus 101 ~~~~~~-----~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 173 (461)
....-+ -..+...+-.+.| ..-++.....+...|.+.+++.+|+..|-.-.++.+..+..|+.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 655321 1222333333433 334677888899999999999999988853222334666555555444433221
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhh
Q 012539 174 SLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 174 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (461)
+|...-.+++ -|.-.+++..|..+++...+
T Consensus 186 --------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 --------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1222222333 34556788888777666554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=87.91 E-value=28 Score=36.25 Aligned_cols=253 Identities=12% Similarity=0.048 Sum_probs=136.1
Q ss_pred ccCCchHHHHHHhcCCC----CCH--HHHHHHHHHHHHcCCHHHHHHHHhhCC-CCC--------h--hHHHHHHHHHHH
Q 012539 4 ELGCLGYCQKVFDGIHE----PDV--VCQTAMISACAKCGDVDLARKMFDEMP-ERD--------P--IAWNAMLAGYAQ 66 (461)
Q Consensus 4 ~~g~~~~A~~~~~~~~~----~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~--------~--~~~~~li~~~~~ 66 (461)
..|+.++++.+++.-+. .+. ..-..+.-+.+.+|.-+++..++.... ..+ . ..--+|.-+.+-
T Consensus 386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~ 465 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA 465 (963)
T ss_dssp TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence 46788889998887553 233 333344445666776667777665533 222 1 122233334443
Q ss_pred cCC-hHHHHHHHHHHHHCCCCcCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH
Q 012539 67 CGK-SREALHLFHLMQIHDVKLNE--VSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKA 143 (461)
Q Consensus 67 ~g~-~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 143 (461)
.|. -+++.+.+..+....- +.. ..-..+...+.-.|+-+....++..+.+.. ..+..-..++.-++.-.|+.+.+
T Consensus 466 ~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~ 543 (963)
T 4ady_A 466 MGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELA 543 (963)
T ss_dssp TTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGG
T ss_pred cCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHH
Confidence 443 2466777777765321 111 111223334556678888888887776532 22222222333334467888888
Q ss_pred HHHHHhcCC-CCHH-HHH---HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhh
Q 012539 144 MDFFWGMKE-RNVY-TWT---SVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR 218 (461)
Q Consensus 144 ~~~~~~~~~-~~~~-~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 218 (461)
..+.+.+.. .+.. -|. ++.-+|+-.|+.....+++..+.... ..+......+.-+....|+.+.+.+++..+..
T Consensus 544 ~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~ 622 (963)
T 4ady_A 544 DDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK 622 (963)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh
Confidence 777777653 3432 333 33456777888877777998887641 22222222222234445666666777765543
Q ss_pred hcCCccChhHHHHHHHHHHhcCCH-HHHHHHHHhCCCCCCHHHH
Q 012539 219 EYGIEPWLEHYGCLVDLYGRAGRL-DEALDVINKMPMKPHAGAW 261 (461)
Q Consensus 219 ~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~p~~~~~ 261 (461)
...|.+..-..+.-+....|.. .+|.+++..+...+|..+-
T Consensus 623 --~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vr 664 (963)
T 4ady_A 623 --SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVR 664 (963)
T ss_dssp --CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHH
T ss_pred --cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHH
Confidence 2345555444555555555543 5677777777434555433
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.83 E-value=3.4 Score=29.71 Aligned_cols=63 Identities=13% Similarity=0.194 Sum_probs=47.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHH
Q 012539 170 AGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234 (461)
Q Consensus 170 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 234 (461)
+.-++.+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+.+ +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 3446677777777777889999999999999999999999999998865433 33456766654
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=86.57 E-value=12 Score=30.54 Aligned_cols=87 Identities=16% Similarity=0.160 Sum_probs=41.9
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHH
Q 012539 14 VFDGIHEPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMV 93 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 93 (461)
+++....+|..+....+..+.+.|..+....+.+.+..+|...-...+.+....|..+ +...+.++.. .++...-.
T Consensus 19 ~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~ 94 (201)
T 3ltj_A 19 YIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQ 94 (201)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHH
Confidence 3344445666666666666666665444444444454555555555555555555432 2233333322 23444444
Q ss_pred HHHHHHhccCC
Q 012539 94 SVLSACTHLGA 104 (461)
Q Consensus 94 ~ll~~~~~~~~ 104 (461)
..+.++...++
T Consensus 95 ~a~~aL~~~~~ 105 (201)
T 3ltj_A 95 SAAVALGQIGD 105 (201)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhCc
Confidence 44444444444
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.24 E-value=18 Score=32.27 Aligned_cols=169 Identities=8% Similarity=0.058 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCcCHHHHHHHHHHHh
Q 012539 25 CQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHL----FHLMQIHDVKLNEVSMVSVLSACT 100 (461)
Q Consensus 25 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~t~~~ll~~~~ 100 (461)
.|.++..=|.+++++++|++++.. -...+.+.|+...|-++ .+-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455555666666667766666442 23345566776555553 455556788888888888877765
Q ss_pred ccCC-----HHHHHHHHHHHHHcCC--CCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhC---CC
Q 012539 101 HLGA-----LDQGRWAHVYIERNRL--KMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMN---GA 170 (461)
Q Consensus 101 ~~~~-----~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~ 170 (461)
.... .+-..+...+-.+.|- .-++.....+...|.+.|++.+|+..|-.-...|...+..++.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 5332 2233334444444432 247788888999999999999999888633333556666555544443 43
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhh
Q 012539 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRRE 219 (461)
Q Consensus 171 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 219 (461)
..++-- ..-.+++ -|.-.+++..|..+++...+.
T Consensus 184 ~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred cchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 333211 1112222 244567888888888766543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.19 E-value=19 Score=32.45 Aligned_cols=167 Identities=17% Similarity=0.128 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHh
Q 012539 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELF----SLMKQAGVRPNEVTFVSVLRGCC 201 (461)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~ 201 (461)
+|.++..-|.+.+++++|++++.. -...+.+.|+...|.++- +-..+.++++|......|+..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455677778999999999887543 223455667765555544 55566788888888777777776
Q ss_pred hcCc--HHHHHHHHHHhhh---hcCCc--cChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 012539 202 VVGL--VEEGREHFDSMRR---EYGIE--PWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNT 274 (461)
Q Consensus 202 ~~g~--~~~a~~~~~~~~~---~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 274 (461)
.... .+. ..+.+.+++ +.|-. -++.....+...|.+.+++.+|..-|- .+..+.+..+..++.-+...+.
T Consensus 106 ~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~- 182 (336)
T 3lpz_A 106 LFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE- 182 (336)
T ss_dssp TSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC-
T ss_pred hCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC-
Confidence 5432 111 222222221 12322 367788889999999999999998874 3433444566555544433332
Q ss_pred HHHHHHHHHHhhccCCCcchHH-HHHHHHhhcCChhHHHHHHHHHHh
Q 012539 275 EMGELASRKLVELETKNHGAYV-LLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 275 ~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
|.....|. -.+--|.-.++...|..+++...+
T Consensus 183 --------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 --------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22222222 234456677888899888777654
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=86.13 E-value=4.3 Score=29.02 Aligned_cols=59 Identities=14% Similarity=0.084 Sum_probs=42.0
Q ss_pred HHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHH
Q 012539 31 SACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSM 92 (461)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 92 (461)
..+.+.|++++|..+.+.+.-||.++|-+|... +.|..+++..-+.++...| .|....|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 456688888888888888888888888877654 5677777776666666655 4444444
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=85.59 E-value=4 Score=29.14 Aligned_cols=60 Identities=13% Similarity=0.000 Sum_probs=43.5
Q ss_pred HHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHH
Q 012539 31 SACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMV 93 (461)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 93 (461)
..+.+.|++++|..+.+.+.-||.++|-+|... +.|..+++..-+.++...| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 456688888888888888888888888877654 6777777777776776665 44444443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=85.09 E-value=8.2 Score=29.39 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=15.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhccCCCc
Q 012539 263 ALLNACRMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 263 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
-|.-++.+.|+++.|.+..+.+.+.+|.|.
T Consensus 83 yLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 83 YLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 333345555555555555555555555543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.27 E-value=21 Score=38.47 Aligned_cols=112 Identities=14% Similarity=0.085 Sum_probs=58.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC--------------------------CHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 012539 128 TALVDMYSKCGNMNKAMDFFWGMKER--------------------------NVYTWTSVIGGLAMNGAGEKSLELFSLM 181 (461)
Q Consensus 128 ~~li~~~~~~g~~~~A~~~~~~~~~~--------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m 181 (461)
-.+..+|..+|++++|...|.+.... -..-|..++..+-+.+.++.++++-+..
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34566677777777777777654310 0112455556666666666666666555
Q ss_pred HHcCCCCCH----HHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCH
Q 012539 182 KQAGVRPNE----VTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL 242 (461)
Q Consensus 182 ~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 242 (461)
.+....-+. ..|..+..++...|++++|...+-.+... .--......||..++..|.+
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---PLKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---SSCHHHHHHHHHHHHHHCCH
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHhCCCh
Confidence 443211111 13555666666666666666666544221 11233444455555544443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=83.83 E-value=23 Score=31.53 Aligned_cols=168 Identities=10% Similarity=0.028 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHh
Q 012539 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLEL----FSLMKQAGVRPNEVTFVSVLRGCC 201 (461)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~ 201 (461)
.|.++..-|.+.+++++|.+++..- ...+.++|+...|-++ .+-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5566777888889999998875432 2345667776665554 455556778888887777777665
Q ss_pred hcCcHH-HHHHHHHHhhh---hcCC--ccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---C
Q 012539 202 VVGLVE-EGREHFDSMRR---EYGI--EPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMY---K 272 (461)
Q Consensus 202 ~~g~~~-~a~~~~~~~~~---~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~---~ 272 (461)
....-+ .=.++.+.+++ +.|- .-++.....+...|.+.|++.+|..-|- .+..-+...+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCCC
Confidence 522111 11222222221 1122 2367888889999999999999998765 22111344555554443333 3
Q ss_pred ChHHHHHHHHHHhhccCCCcchHH-HHHHHHhhcCChhHHHHHHHHHHh
Q 012539 273 NTEMGELASRKLVELETKNHGAYV-LLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 273 ~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
...++- .|. -.+--|.-.|+...|..+++...+
T Consensus 183 ~~~e~d---------------lf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVA---------------EFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHH---------------HHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CcchHH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333322 221 223345677888899988887654
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=81.99 E-value=20 Score=29.42 Aligned_cols=167 Identities=9% Similarity=0.032 Sum_probs=91.4
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 012539 38 DVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117 (461)
Q Consensus 38 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 117 (461)
+.+....+.+.+..+|...-...+..+.+.|.. .+...+.++.. .+|...-...+.++...+..+.. ..+..+.+
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~ 91 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAV-EPLIKALK 91 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc
Confidence 334444455555666777666777777777764 34444444443 34666666666666666654332 22222222
Q ss_pred cCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012539 118 NRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVL 197 (461)
Q Consensus 118 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 197 (461)
.++..+-...+....+.|+.+....+.+.+..++...-...+.++.+.|.. ++...+..+.. .++...-...+
T Consensus 92 ---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~ 164 (211)
T 3ltm_A 92 ---DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAA 164 (211)
T ss_dssp ---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHH
Confidence 455666666677777777655444445555566666666666666666654 34444444432 34555555556
Q ss_pred HHHhhcCcHHHHHHHHHHhh
Q 012539 198 RGCCVVGLVEEGREHFDSMR 217 (461)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~ 217 (461)
.++.+.+. .++...+..+.
T Consensus 165 ~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 165 DALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp HHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHhCc-hhHHHHHHHHH
Confidence 66666554 33444444443
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.13 E-value=36 Score=31.89 Aligned_cols=56 Identities=9% Similarity=-0.019 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC------CCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012539 127 GTALVDMYSKCGNMNKAMDFFWGMKE------RNVYTWTSVIGGLAMNGAGEKSLELFSLMK 182 (461)
Q Consensus 127 ~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 182 (461)
...+.+.|.+.|++++|.+.|.++.. .-+..+-..|..+...+++..+...+++..
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34466666666666666666665542 123445555666666666666666666553
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=81.13 E-value=8.6 Score=29.30 Aligned_cols=62 Identities=11% Similarity=0.159 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHH
Q 012539 171 GEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234 (461)
Q Consensus 171 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 234 (461)
.-+..+-++.+....+.|+.....+.+.+|.+.+++..|.++|+.++.+. .+....|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 33566677777777789999999999999999999999999999886543 344556776664
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.50 E-value=9.1 Score=29.15 Aligned_cols=56 Identities=13% Similarity=0.182 Sum_probs=41.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHH
Q 012539 244 EALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299 (461)
Q Consensus 244 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 299 (461)
+++.-+-.+..-|++.+..+.+.+|++.+|+..|.++++-++..-.+....|..++
T Consensus 74 rglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 74 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 34444444566799999999999999999999999999998865433344676665
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 461 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 4e-05
Identities = 41/290 (14%), Positives = 80/290 (27%), Gaps = 9/290 (3%)
Query: 35 KCGDVDLARKMFDEMPERDP---IAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVS 91
+ GD + A + ++ ++P + + + QC + + H
Sbjct: 11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFST--LAIKQNPLLAE 68
Query: 92 MVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK 151
S L Q H + L G+M A+ +
Sbjct: 69 AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128
Query: 152 ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGRE 211
+ N + + A + E + +A GC E
Sbjct: 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ-GEIWL 187
Query: 212 HFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKMP--MKPHAGAWGALLNAC 268
+ ++P +L+ Y L ++ A D A+ + HA G L
Sbjct: 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 247
Query: 269 RMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIM 318
++ R+ +EL+ AY L+N E + +
Sbjct: 248 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA 297
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 461 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.85 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.63 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.27 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.2 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.2 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.19 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.16 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.16 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.13 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.07 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.04 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.99 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.75 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.65 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.65 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.62 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.53 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.46 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.43 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.42 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.4 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.35 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.31 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.3 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.29 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.24 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.21 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.2 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.14 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.11 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.11 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.04 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.0 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.95 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.9 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.9 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.87 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.84 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.82 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.82 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.79 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.78 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.67 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.53 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.52 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.41 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.26 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.24 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.23 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.13 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.11 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.84 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.93 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.15 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.06 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.59 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.18 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.46 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 89.32 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.81 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 84.83 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=3.6e-20 Score=173.96 Aligned_cols=313 Identities=13% Similarity=0.097 Sum_probs=255.8
Q ss_pred ccccCCchHHHHHHhcCC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHH
Q 012539 2 YAELGCLGYCQKVFDGIH--EP-DVVCQTAMISACAKCGDVDLARKMFDEMPE---RDPIAWNAMLAGYAQCGKSREALH 75 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 75 (461)
+.+.|++++|++.|+++. .| ++.++..+..+|.+.|++++|...|++..+ .++.+|..+...|.+.|++++|+.
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~ 88 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccc
Confidence 456899999999999875 34 678899999999999999999999998753 357799999999999999999999
Q ss_pred HHHHHHHCCCCcCHHHHHHH----------------------------------HHHHhccCCHHHHHHHHHHHHHcCCC
Q 012539 76 LFHLMQIHDVKLNEVSMVSV----------------------------------LSACTHLGALDQGRWAHVYIERNRLK 121 (461)
Q Consensus 76 ~~~~m~~~~~~p~~~t~~~l----------------------------------l~~~~~~~~~~~a~~~~~~~~~~~~~ 121 (461)
.+......... +....... .......+....+...+....... +
T Consensus 89 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 166 (388)
T d1w3ba_ 89 HYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-P 166 (388)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-T
T ss_pred ccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-c
Confidence 99998775422 22222121 222233334444455555555443 4
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012539 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLR 198 (461)
Q Consensus 122 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 198 (461)
.+...+..+...+...|++++|...++... ..+..+|..+...+...|++++|+..+++..... +.+...+..+..
T Consensus 167 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 245 (388)
T d1w3ba_ 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLAC 245 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHH
Confidence 456677788999999999999999998765 3467889999999999999999999999998763 445677888888
Q ss_pred HHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChH
Q 012539 199 GCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM--PMKPHAGAWGALLNACRMYKNTE 275 (461)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~ 275 (461)
.+...|++++|...|+++.+ +.| ++..+..+...|...|++++|.+.++.. ....+...+..+...+...|+++
T Consensus 246 ~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 322 (388)
T d1w3ba_ 246 VYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHH
Confidence 99999999999999999875 344 4778999999999999999999999887 22346678888888999999999
Q ss_pred HHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 276 MGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 276 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
+|...++++.+..|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus 323 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998765
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.3e-18 Score=163.20 Aligned_cols=300 Identities=10% Similarity=0.040 Sum_probs=248.8
Q ss_pred ccccCCchHHHHHHhcCC--C-CCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCC--------------------------
Q 012539 2 YAELGCLGYCQKVFDGIH--E-PDVVCQTAMISACAKCGDVDLARKMFDEMPER-------------------------- 52 (461)
Q Consensus 2 y~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------------------- 52 (461)
|.+.|++++|+..|++.. . .+..+|..+..+|.+.|++++|+..+....+.
T Consensus 43 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (388)
T d1w3ba_ 43 HFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 567899999999999875 2 36788999999999999999999999876421
Q ss_pred -----------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 012539 53 -----------DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLK 121 (461)
Q Consensus 53 -----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 121 (461)
...............+....+...+.+..... +-+..++..+...+...++++.|...+...++.. +
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p 200 (388)
T d1w3ba_ 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-P 200 (388)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-T
T ss_pred ccccccccccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-c
Confidence 11223334444455566666666666666542 2355677788888999999999999999998875 5
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 012539 122 MTVTLGTALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRP-NEVTFVSVL 197 (461)
Q Consensus 122 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll 197 (461)
.+...+..+...|...|++++|...|+.... .+...|..+...+.+.|++++|+..|++..+. .| +..++..+.
T Consensus 201 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 278 (388)
T d1w3ba_ 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLA 278 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHH
T ss_pred ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 5677888999999999999999999987763 56788899999999999999999999999884 45 477888899
Q ss_pred HHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChH
Q 012539 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH-AGAWGALLNACRMYKNTE 275 (461)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~ 275 (461)
.++...|+.++|...++.... ..+.+...+..+...+.+.|++++|...|++. ...|+ ..+|..+...+...|+++
T Consensus 279 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 356 (388)
T d1w3ba_ 279 NALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 356 (388)
T ss_dssp HHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999998875 34456788899999999999999999999986 55665 557888889999999999
Q ss_pred HHHHHHHHHhhccCCCcchHHHHHHHHhhcCC
Q 012539 276 MGELASRKLVELETKNHGAYVLLSNIYAESKN 307 (461)
Q Consensus 276 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 307 (461)
+|...++++.+++|+++.+|..|+.+|.+.|+
T Consensus 357 ~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 357 EALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999988775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=4.9e-14 Score=128.71 Aligned_cols=242 Identities=14% Similarity=-0.034 Sum_probs=170.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 012539 58 NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137 (461)
Q Consensus 58 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 137 (461)
-.....+.+.|++++|+..|+++.+.. +-+..+|..+..++...|++++|...+.++++.. |.+...+..++..|...
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 345667778888888888888887753 2246677777778888888888888888877764 44566667777777777
Q ss_pred CCHHHHHHHHHhcCCCCH--H-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHH
Q 012539 138 GNMNKAMDFFWGMKERNV--Y-TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFD 214 (461)
Q Consensus 138 g~~~~A~~~~~~~~~~~~--~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 214 (461)
|++++|.+.++.....+. . .+....... ...+.......+..+...+...++...+.
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 777777777776542111 0 000000000 00000011112223344566777888887
Q ss_pred HhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCc
Q 012539 215 SMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 215 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
...+...-.++..++..+...+...|++++|...+++. ...| +..+|..+...+...|++++|...++++.+.+|.++
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 240 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence 77654233345677888889999999999999999887 3344 456888888899999999999999999999999999
Q ss_pred chHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 293 GAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
.+|..++.+|.+.|++++|++.|++..+.
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999988763
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.9e-14 Score=131.45 Aligned_cols=264 Identities=12% Similarity=0.016 Sum_probs=187.5
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCC
Q 012539 28 AMISACAKCGDVDLARKMFDEMPE--R-DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGA 104 (461)
Q Consensus 28 ~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 104 (461)
.....+.+.|++++|+..|+++.+ | ++.+|..+..+|...|++++|+..|.+..+.. +-+...+..+...+...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 456678899999999999998754 2 57799999999999999999999999998853 2256788888899999999
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 012539 105 LDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184 (461)
Q Consensus 105 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 184 (461)
+++|...+..+...... ............. ..+.......+..+...+.+.+|.+.|.+....
T Consensus 103 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPA-YAHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp HHHHHHHHHHHHHTSTT-TGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccc-hHHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999876422 1111110000000 001111111122333445667788888877664
Q ss_pred CC-CCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHH
Q 012539 185 GV-RPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGA 260 (461)
Q Consensus 185 g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 260 (461)
.. .++...+..+...+...|++++|...++..... .| +...|..+...|.+.|++++|.+.|++. ...| +..+
T Consensus 166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 242 (323)
T d1fcha_ 166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 242 (323)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHH
Confidence 32 234667777888888899999999999888653 34 4678888889999999999999998887 3445 4558
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhccCCCcch-----------HHHHHHHHhhcCChhHHH
Q 012539 261 WGALLNACRMYKNTEMGELASRKLVELETKNHGA-----------YVLLSNIYAESKNWDRVI 312 (461)
Q Consensus 261 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~a~ 312 (461)
|..+..+|...|++++|...|++++++.|++... |..+..++...|+.+.+.
T Consensus 243 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 243 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888889999999999999999999988876543 344555565556655443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=1.7e-09 Score=98.57 Aligned_cols=260 Identities=11% Similarity=-0.019 Sum_probs=161.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--C---CchHHHHHHH
Q 012539 61 LAGYAQCGKSREALHLFHLMQIHDVKLN----EVSMVSVLSACTHLGALDQGRWAHVYIERNRL--K---MTVTLGTALV 131 (461)
Q Consensus 61 i~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~li 131 (461)
...+...|++++|+.++++..+.....+ ..++..+..++...|++++|...+.+..+... + .....+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3445566666666666666555321111 12444455566666666666666665553211 0 1123344556
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-------C----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC----CCHHHHHHH
Q 012539 132 DMYSKCGNMNKAMDFFWGMKE-------R----NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVR----PNEVTFVSV 196 (461)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~l 196 (461)
..+...|++..|...+..... + ....+..+...+...|+++.+...+......... ....++...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 667777777777766655431 1 1134555667777888888888888777653211 123444555
Q ss_pred HHHHhhcCcHHHHHHHHHHhhhhcCCcc-----ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHH
Q 012539 197 LRGCCVVGLVEEGREHFDSMRREYGIEP-----WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-----HAGAWGALL 265 (461)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~ll 265 (461)
...+...+....+...+........-.. ....+..+...+...|++++|...++.. ...| ....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 5666677788777777766543222111 1234556667788889999999888876 2221 123455667
Q ss_pred HHHHhcCChHHHHHHHHHHhhc------cCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012539 266 NACRMYKNTEMGELASRKLVEL------ETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 266 ~~~~~~~~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 320 (461)
..+...|++++|...++++... .|....++..+..+|...|++++|.+.+++..+
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7788899999999999888642 344556788899999999999999999987754
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=5.3e-09 Score=95.24 Aligned_cols=288 Identities=9% Similarity=-0.042 Sum_probs=201.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC--C--C----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC----CCc-CHHHH
Q 012539 26 QTAMISACAKCGDVDLARKMFDEMPE--R--D----PIAWNAMLAGYAQCGKSREALHLFHLMQIHD----VKL-NEVSM 92 (461)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~~~~~m~~--~--~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p-~~~t~ 92 (461)
.......+...|++++|+.+|++..+ | + ...++.+...|...|++++|+..|++..+.. ..+ ...++
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 34445677899999999999987532 2 2 3467888899999999999999999886521 111 12355
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHc----CCCC---chHHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CCHHH
Q 012539 93 VSVLSACTHLGALDQGRWAHVYIERN----RLKM---TVTLGTALVDMYSKCGNMNKAMDFFWGMKE--------RNVYT 157 (461)
Q Consensus 93 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~ 157 (461)
..+...+...|++..+...+...... ..+. ....+..+...+...|+++.|...+..... ....+
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 66677788899999999988876642 2222 123556678889999999999999887652 13456
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc--ChhHH
Q 012539 158 WTSVIGGLAMNGAGEKSLELFSLMKQA--GVRPN----EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP--WLEHY 229 (461)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~ 229 (461)
+..+...+...++..++...+.+.... ..... ...+..+...+...|+.++|...+....+...-.+ ....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 666777888899999999988876542 11111 22345556677789999999999988764311111 13455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC---------c
Q 012539 230 GCLVDLYGRAGRLDEALDVINKM-------PMKPHA-GAWGALLNACRMYKNTEMGELASRKLVELETKN---------H 292 (461)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---------~ 292 (461)
..+...|...|++++|...+++. +..|+. .++..+...+...|++++|...++++.++.++. .
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~ 334 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG 334 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHH
Confidence 66788999999999999988876 333433 367777778999999999999999988764321 1
Q ss_pred chHHHHHHHHhhcCChhHHHH
Q 012539 293 GAYVLLSNIYAESKNWDRVIN 313 (461)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~a~~ 313 (461)
.....++..+...++.+++.+
T Consensus 335 ~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 335 EAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHhcCCChHHHH
Confidence 233445555666677766654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.20 E-value=2.3e-09 Score=96.49 Aligned_cols=186 Identities=8% Similarity=-0.002 Sum_probs=141.5
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C-HHHHHHHHHHHHhCCChHHHHHHHH
Q 012539 104 ALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKE--R-N-VYTWTSVIGGLAMNGAGEKSLELFS 179 (461)
Q Consensus 104 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~ 179 (461)
..+++..++++.++...+.+...+...+..+.+.|+++.|..+|+.+.. | + ...|...+....+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4577888888888765566777888888888899999999999988753 2 3 3478888888888999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHH-HhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC----CC
Q 012539 180 LMKQAGVRPNEVTFVSVLRG-CCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM----PM 254 (461)
Q Consensus 180 ~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~ 254 (461)
++.+.+. .+...|...... +...|+.+.|..+|+.+.+. .+.++..+...++.+.+.|+++.|..+|++. +.
T Consensus 159 ~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 9887542 233444433332 34468889999999988764 3345678888889989999999999999886 33
Q ss_pred CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCc
Q 012539 255 KPH--AGAWGALLNACRMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 255 ~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
.|+ ...|...+.--..+|+.+.+..+++++.+..|...
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 332 34788888888888999999999998888877653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=3.2e-10 Score=99.25 Aligned_cols=221 Identities=10% Similarity=-0.052 Sum_probs=127.8
Q ss_pred hHHHHHHHHHHHHCCC-Cc--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 012539 70 SREALHLFHLMQIHDV-KL--NEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDF 146 (461)
Q Consensus 70 ~~~A~~~~~~m~~~~~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 146 (461)
.+.|+.-+++...... .+ ...++..+..++.+.|++++|...|.+.++.. |.++.+++.+..+|.+.|++++|++.
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 3455555555554321 11 12355556667777777777777777777664 45666777777778888888888887
Q ss_pred HHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCc
Q 012539 147 FWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIE 223 (461)
Q Consensus 147 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 223 (461)
|++..+ .+..+|..+..+|...|++++|++.|++..+.. +.+......+..++...+..+....+...... ..
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 169 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SD 169 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SC
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cc
Confidence 777663 345677777778888888888888888877642 22333333333344445554444444444332 22
Q ss_pred cChhHHHHHHHHHHhcCC----HHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHH
Q 012539 224 PWLEHYGCLVDLYGRAGR----LDEALDVINKM-PMKPHA-GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYV 296 (461)
Q Consensus 224 p~~~~~~~li~~~~~~g~----~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 296 (461)
+....+. ++..+..... .+.+...+... ...|+. .+|..+...+...|++++|...|++++..+|++...|.
T Consensus 170 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 170 KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 2222222 2222222211 22222222111 111222 36666777788999999999999999999988754443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=4.8e-09 Score=94.53 Aligned_cols=187 Identities=11% Similarity=0.015 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 012539 56 AWNAMLAGYAQCGKSREALHLFHLMQIHDVKL-NEVSMVSVLSACTHLG-ALDQGRWAHVYIERNRLKMTVTLGTALVDM 133 (461)
Q Consensus 56 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 133 (461)
.|+.+...+.+.+.+++|+++++++++. .| +...|+....++...+ ++++|...++.+++.. +-+..+|+.+...
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 5555666666666777777777777663 34 3445566666665554 3667777777666654 4456666666667
Q ss_pred HHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC------
Q 012539 134 YSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVG------ 204 (461)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g------ 204 (461)
+.+.|++++|+..|+.+.+ .+..+|..+...+.+.|++++|++.|+++.+.. +-+...|+.+...+...+
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhh
Confidence 7777777777777766653 356667777777777777777777777776642 223445554444433322
Q ss_pred cHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHH
Q 012539 205 LVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVIN 250 (461)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (461)
.+++|...+..+++. .| +...|..+...+...| .+++.+.++
T Consensus 201 ~~~~ai~~~~~al~~---~P~~~~~~~~l~~ll~~~~-~~~~~~~~~ 243 (315)
T d2h6fa1 201 VLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRG-LSKYPNLLN 243 (315)
T ss_dssp HHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTC-GGGCHHHHH
T ss_pred hhHHhHHHHHHHHHh---CCCchHHHHHHHHHHHhcC-hHHHHHHHH
Confidence 245566666555432 33 3445554544443332 344444333
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.16 E-value=1.5e-10 Score=105.82 Aligned_cols=270 Identities=8% Similarity=-0.088 Sum_probs=194.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC--C-ChhHHHHHHHH----------HHHcCChHHHHHHHHHHHHCCCCcCHHHH
Q 012539 26 QTAMISACAKCGDVDLARKMFDEMPE--R-DPIAWNAMLAG----------YAQCGKSREALHLFHLMQIHDVKLNEVSM 92 (461)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~----------~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 92 (461)
+..++....+.+..++|+.++++..+ | +...|+..-.. +...|.+++|+.++++..+.. +-+...|
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~ 110 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTW 110 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHH
Confidence 34444444444456899999998763 4 34456543333 334455789999999998854 2366677
Q ss_pred HHHHHHHhccC--CHHHHHHHHHHHHHcCCCCchHHH-HHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHH
Q 012539 93 VSVLSACTHLG--ALDQGRWAHVYIERNRLKMTVTLG-TALVDMYSKCGNMNKAMDFFWGMKE---RNVYTWTSVIGGLA 166 (461)
Q Consensus 93 ~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 166 (461)
..+..++...+ +++++...+..+++.. +++...+ ..+...+...|.+++|+..++.... .+..+|+.+...+.
T Consensus 111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~ 189 (334)
T d1dcea1 111 HHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP 189 (334)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 77777776665 4889999999999875 3444444 4456778889999999999998874 46789999999999
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHH
Q 012539 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEAL 246 (461)
Q Consensus 167 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 246 (461)
+.|++++|...+++.... .|+.. .+...+...+..+++...+..... .-+++...+..+...+...|+.++|.
T Consensus 190 ~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~ 262 (334)
T d1dcea1 190 QLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESC 262 (334)
T ss_dssp HHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHhhHHHHH
Confidence 999998887776655442 22221 223334455666677777776654 33445667778888889999999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhh
Q 012539 247 DVINKM-PMKPH-AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAE 304 (461)
Q Consensus 247 ~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 304 (461)
..+.+. ...|+ ..+|..+...+...|+.++|...++++.+++|.+...|..|...+.-
T Consensus 263 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 263 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 988877 44554 34778888889999999999999999999999988888888776653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=2.7e-09 Score=96.19 Aligned_cols=209 Identities=10% Similarity=0.053 Sum_probs=165.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC-CHHHHHHHHHhcC---CCCHHHHHHHHHHH
Q 012539 90 VSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCG-NMNKAMDFFWGMK---ERNVYTWTSVIGGL 165 (461)
Q Consensus 90 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~ 165 (461)
..++.+...+.+.+..++|.+.++.+++.+ |.+..+|+....++...| ++++|+..++... ..+..+|..+...+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence 466667777888899999999999999986 667788898999988876 5999999999876 35788999999999
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCC---
Q 012539 166 AMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGR--- 241 (461)
Q Consensus 166 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~--- 241 (461)
.+.|++++|++.++++.+.. +-+...|..+...+...|++++|...++.+++. .| +...|+.+...+.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---CCccHHHHHHHHHHHHHccccch
Confidence 99999999999999998852 335888999999999999999999999999853 45 46778777777776665
Q ss_pred ---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcc--hHHHHHHHHhh
Q 012539 242 ---LDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHG--AYVLLSNIYAE 304 (461)
Q Consensus 242 ---~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~ 304 (461)
+++|...+.+. ...| +...|+.+...+. ....+++...++.+.++.|.... .+..++..|..
T Consensus 199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 57788877766 4445 5567777655544 44568888999999888877443 44566666643
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=1.6e-09 Score=94.62 Aligned_cols=212 Identities=10% Similarity=-0.032 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHHcCCCC---chHHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHH
Q 012539 105 LDQGRWAHVYIERNRLKM---TVTLGTALVDMYSKCGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKSLELF 178 (461)
Q Consensus 105 ~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 178 (461)
.+.+...+.++....... ...++..+..+|.+.|++++|+..|++.. ..++.+|+.+..+|.+.|++++|++.|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 344555555665432211 23466778999999999999999999876 357889999999999999999999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 012539 179 SLMKQAGVRP-NEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMK 255 (461)
Q Consensus 179 ~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 255 (461)
++..+. .| +..++..+..++...|+.++|...|+...+. .| +......+...+.+.+..+.+..+.... ...
T Consensus 95 ~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (259)
T d1xnfa_ 95 DSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 169 (259)
T ss_dssp HHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred hHHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Confidence 999885 44 4667888889999999999999999998764 34 3444444445555666555544444333 112
Q ss_pred CCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012539 256 PHAGAWGALLNACRM----YKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKG 322 (461)
Q Consensus 256 p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 322 (461)
++...++. +..+.. .+..+.+...+.......|....+|..+...|...|++++|.+.+++.....
T Consensus 170 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 170 KEQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp CCSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 22222222 222211 1223333333333334456666688899999999999999999999887643
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.04 E-value=4.7e-08 Score=87.63 Aligned_cols=181 Identities=9% Similarity=-0.002 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 012539 71 REALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGM 150 (461)
Q Consensus 71 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 150 (461)
++|..+|++..+...+.+...+...+......|+.+.+..+++.+++........+|...+....+.|+++.|+++|+..
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 45555555555432223334444555555555566666666665555432222334555555555556666666666554
Q ss_pred CCC---CHHHHHHHHHH-HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-
Q 012539 151 KER---NVYTWTSVIGG-LAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW- 225 (461)
Q Consensus 151 ~~~---~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~- 225 (461)
.+. +...|...... +...|+.+.|..+|+.+... .+.+...+...+......|+++.|+.+|++..+..+..|.
T Consensus 161 l~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~ 239 (308)
T d2onda1 161 REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp HTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred HHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Confidence 421 22223222222 22345566666666666553 2233455555555556666666666666665543333332
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012539 226 -LEHYGCLVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 226 -~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (461)
...|...+..-...|+.+.+.++++++
T Consensus 240 ~~~iw~~~~~fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 240 SGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 234555555555566666666665554
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.99 E-value=1.4e-09 Score=99.05 Aligned_cols=254 Identities=8% Similarity=-0.129 Sum_probs=182.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHH-HHHHHH---HHH-------hccCCHHHHHHHHHHHHHcCCCCchHH
Q 012539 58 NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEV-SMVSVL---SAC-------THLGALDQGRWAHVYIERNRLKMTVTL 126 (461)
Q Consensus 58 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll---~~~-------~~~~~~~~a~~~~~~~~~~~~~~~~~~ 126 (461)
..++......+..++|++++++..+. .|+.. .|+..- ... ...+.++++...++.+++.. |.+...
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~ 109 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGT 109 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHH
Confidence 33433333344458999999999884 56654 343322 222 23345788899999988875 556777
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHhcCC---CCHHHHHHH-HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012539 127 GTALVDMYSKCG--NMNKAMDFFWGMKE---RNVYTWTSV-IGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGC 200 (461)
Q Consensus 127 ~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 200 (461)
+..+..++...+ ++++|...++.+.. ++...|... ...+...+.+++|+..++++.+.. +-+...|..+...+
T Consensus 110 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~ 188 (334)
T d1dcea1 110 WHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLL 188 (334)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 777777777765 48899999998753 456666544 467778899999999999988753 23577888888888
Q ss_pred hhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHH
Q 012539 201 CVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM--PMKPHAGAWGALLNACRMYKNTEMGE 278 (461)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~ 278 (461)
...|+.++|...+....+. .|+ ...+...+...+..+++...+... ...++...+..+...+...++.++|.
T Consensus 189 ~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~ 262 (334)
T d1dcea1 189 PQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESC 262 (334)
T ss_dssp HHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHH
Confidence 8899888776666554432 221 122334455667777777766655 22234446666777788889999999
Q ss_pred HHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 279 LASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 279 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
..+.+..+.+|.+..++..++.+|...|++++|.+.+++..+.
T Consensus 263 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 263 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998774
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=2.9e-07 Score=75.95 Aligned_cols=145 Identities=7% Similarity=-0.064 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCc
Q 012539 126 LGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGL 205 (461)
Q Consensus 126 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 205 (461)
.|+ -...+...|++++|++.|+++.+++..+|..+..+|...|++++|++.|++..+.. +-+...|..+..++.+.|+
T Consensus 8 l~~-~g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 8 LWN-EGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHH-HHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHH-HHHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhcc
Confidence 444 35667889999999999999998999999999999999999999999999998853 2347788888889999999
Q ss_pred HHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 012539 206 VEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKPH-AGAWGALLNACRMYKNTEMGELASRKL 284 (461)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 284 (461)
.++|...|+..+.. .+++... .|...| +..+++ ..++..+..++...|++++|...++++
T Consensus 86 ~~~A~~~~~kAl~~--~~~n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A 146 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQ--LRGNQLI------DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 146 (192)
T ss_dssp HHHHHHHHHHHHHT--TTTCSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CccCchH------HHHHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999887642 1222100 000000 000111 124445555677777788888877777
Q ss_pred hhccCCC
Q 012539 285 VELETKN 291 (461)
Q Consensus 285 ~~~~p~~ 291 (461)
.++.|..
T Consensus 147 ~~~~~~~ 153 (192)
T d1hh8a_ 147 TSMKSEP 153 (192)
T ss_dssp HTTCCSG
T ss_pred HhcCCCc
Confidence 7777654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=8.2e-07 Score=73.15 Aligned_cols=138 Identities=14% Similarity=-0.064 Sum_probs=92.1
Q ss_pred HHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHH
Q 012539 30 ISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGR 109 (461)
Q Consensus 30 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 109 (461)
...+...|+++.|++.|+++..+++.+|..+..+|...|++++|++.|++.++.+ +-+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 4556778888888888888877788888888888888888888888888887754 235667777778888888888888
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 012539 110 WAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQA 184 (461)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 184 (461)
..|++.+... +.+... .|...|.. .......++..+..++.+.|++++|.+.|......
T Consensus 91 ~~~~kAl~~~-~~n~~~------~~~~~~~~---------~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 91 KDLKEALIQL-RGNQLI------DYKILGLQ---------FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHTT-TTCSEE------ECGGGTBC---------CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhC-ccCchH------HHHHhhhh---------cccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8877776532 111100 00000000 00001234556677788888888888888877764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.65 E-value=3.6e-07 Score=80.87 Aligned_cols=191 Identities=10% Similarity=-0.038 Sum_probs=127.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC---CC--CHHHH
Q 012539 128 TALVDMYSKCGNMNKAMDFFWGMKE-----RN----VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGV---RP--NEVTF 193 (461)
Q Consensus 128 ~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~~~ 193 (461)
....+.|...|++++|.+.|.+..+ .+ ..+|..+..+|.+.|++++|++.+++..+.-. .+ ...++
T Consensus 41 ~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 120 (290)
T d1qqea_ 41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK 120 (290)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHH
Confidence 3346678888888888888876652 12 35788888889999999999999887654211 11 13445
Q ss_pred HHHHHHHh-hcCcHHHHHHHHHHhhhhc---CCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-------H-H
Q 012539 194 VSVLRGCC-VVGLVEEGREHFDSMRREY---GIEPW-LEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH-------A-G 259 (461)
Q Consensus 194 ~~ll~~~~-~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-------~-~ 259 (461)
..+...|. ..|++++|...+....+-. +.++. ..++..+...|.+.|++++|...|+++ ...|+ . .
T Consensus 121 ~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 200 (290)
T d1qqea_ 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (290)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHH
Confidence 56666664 4699999999998775421 21221 346778899999999999999999886 11111 1 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcc-----hHHHHHHHHhh--cCChhHHHHHHHHH
Q 012539 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHG-----AYVLLSNIYAE--SKNWDRVINVRQIM 318 (461)
Q Consensus 260 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~a~~~~~~m 318 (461)
.+...+..+...++.+.|...+++..+.+|.... ....|+.++.. .+.+++|...|+.+
T Consensus 201 ~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 201 YFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2344445577889999999999999998876332 34556666654 34578888777543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.62 E-value=2.6e-06 Score=75.13 Aligned_cols=192 Identities=10% Similarity=-0.010 Sum_probs=104.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-----CCchHHH
Q 012539 58 NAMLAGYAQCGKSREALHLFHLMQIH----DVKL-NEVSMVSVLSACTHLGALDQGRWAHVYIERNRL-----KMTVTLG 127 (461)
Q Consensus 58 ~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~ 127 (461)
.-....|...|++++|++.|.+..+. +-++ -..+|..+..+|.+.|++++|...+....+... .....++
T Consensus 41 ~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 120 (290)
T d1qqea_ 41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK 120 (290)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHH
Confidence 34466677777777777777766542 1111 123566666777777777777777666553210 1113344
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-----H-H
Q 012539 128 TALVDMYSK-CGNMNKAMDFFWGMKE-----RN----VYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPN-----E-V 191 (461)
Q Consensus 128 ~~li~~~~~-~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~-~ 191 (461)
..+...|.. .|++++|.+.|++..+ .+ ..+|..+...|...|++++|++.|++......... . .
T Consensus 121 ~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 200 (290)
T d1qqea_ 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (290)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHH
Confidence 445555533 5777777777765431 11 23466667777777777777777777655321111 0 1
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC------hhHHHHHHHHHHh--cCCHHHHHHHHHhC
Q 012539 192 TFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW------LEHYGCLVDLYGR--AGRLDEALDVINKM 252 (461)
Q Consensus 192 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~--~g~~~~A~~~~~~~ 252 (461)
.+...+..+...|+.+.|...++...+ +.|+ ......++.++.. .+.+++|+..|+++
T Consensus 201 ~~~~~~~~~l~~~d~~~A~~~~~~~~~---~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 201 YFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 122333345556777777777766643 2221 1223444445443 23466666666655
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.53 E-value=3.4e-07 Score=76.00 Aligned_cols=103 Identities=10% Similarity=-0.037 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 012539 188 PNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPH-AGAWGALL 265 (461)
Q Consensus 188 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll 265 (461)
|+...+......+...|++++|...|..+++. -+.++..|..+..+|.+.|++++|+..|++. .+.|+ ..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 44555555555566666666666666555432 1223455555555566666666666555554 33343 33555555
Q ss_pred HHHHhcCChHHHHHHHHHHhhccCCCc
Q 012539 266 NACRMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 266 ~~~~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
.++...|++++|...++++.++.|.+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~ 106 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQR 106 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence 555555566666555555555555433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=1.4e-06 Score=65.26 Aligned_cols=102 Identities=14% Similarity=0.100 Sum_probs=60.4
Q ss_pred HHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChH
Q 012539 198 RGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMK-PHAGAWGALLNACRMYKNTE 275 (461)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~ 275 (461)
..+...|++++|...|...++. -+.++..|..+..+|.+.|++++|+..+++. ... .+...|..+..++...|+++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 3455566666666666665542 1223555666666666666666666666555 222 24456666666667777777
Q ss_pred HHHHHHHHHhhccCCCcchHHHHHHH
Q 012539 276 MGELASRKLVELETKNHGAYVLLSNI 301 (461)
Q Consensus 276 ~a~~~~~~~~~~~p~~~~~~~~l~~~ 301 (461)
+|+..++++.+.+|.++..+..+.++
T Consensus 89 ~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 89 EAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 77777777777777766555554443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.43 E-value=5.2e-07 Score=74.82 Aligned_cols=96 Identities=7% Similarity=-0.065 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-hhHHHH
Q 012539 153 RNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHYGC 231 (461)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 231 (461)
|+...+......|.+.|++++|+..|++..... +.+...|..+..+|.+.|++++|...|..++ .+.|+ +..|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHHH
Confidence 445555666677777777888888777776642 3346667777777777777777777777775 44553 567777
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 012539 232 LVDLYGRAGRLDEALDVINKM 252 (461)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~ 252 (461)
+..+|.+.|++++|+..|+++
T Consensus 78 lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 777777777777777777765
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=9.2e-07 Score=66.30 Aligned_cols=90 Identities=11% Similarity=0.046 Sum_probs=81.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChh
Q 012539 232 LVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309 (461)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 309 (461)
-...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.++...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 456788999999999999998 3345 56689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 012539 310 RVINVRQIMKAK 321 (461)
Q Consensus 310 ~a~~~~~~m~~~ 321 (461)
+|+..+++..+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.40 E-value=3.5e-07 Score=68.06 Aligned_cols=89 Identities=13% Similarity=0.044 Sum_probs=79.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCC
Q 012539 230 GCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKN 307 (461)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 307 (461)
-.+...+.+.|++++|...|++. ...| ++..|..+..++...|++++|+..++++.+++|.+..++..|+.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34567788899999999999887 4455 466899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHH
Q 012539 308 WDRVINVRQIM 318 (461)
Q Consensus 308 ~~~a~~~~~~m 318 (461)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=2.6e-06 Score=67.66 Aligned_cols=115 Identities=11% Similarity=0.046 Sum_probs=80.7
Q ss_pred HHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 012539 197 LRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKN 273 (461)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~ 273 (461)
...|.+.|++++|...|+.+++. .| +...|..+..+|...|++++|...|+++ ...| +..+|..+..++...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 34566777777777777777643 34 4667777777788888888888877776 3345 44588888888888888
Q ss_pred hHHHHHHHHHHhhccCCCcchHHHHHHHH--hhcCChhHHHHH
Q 012539 274 TEMGELASRKLVELETKNHGAYVLLSNIY--AESKNWDRVINV 314 (461)
Q Consensus 274 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~ 314 (461)
+++|...++++.++.|.++..+..+..+. ...+.++++...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88888888898888888877766665543 333445555443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.31 E-value=0.00052 Score=60.66 Aligned_cols=46 Identities=11% Similarity=0.128 Sum_probs=27.2
Q ss_pred HHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHH
Q 012539 268 CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVR 315 (461)
Q Consensus 268 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 315 (461)
+.+.++.......++...+.+ +.....+|...|...++++.-++..
T Consensus 258 ~~k~~~l~li~p~Le~v~~~n--~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 258 FSKVKQLPLVKPYLRSVQNHN--NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp HHHTTCTTTTHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHcC--hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 334445555555555544322 3457888888898888865544443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.30 E-value=0.00049 Score=58.92 Aligned_cols=229 Identities=17% Similarity=0.017 Sum_probs=119.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCchHHHH
Q 012539 53 DPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH----LGALDQGRWAHVYIERNRLKMTVTLGT 128 (461)
Q Consensus 53 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 128 (461)
|+..+..|...+.+.+++++|++.|++..+.| |...+..+...+.. ..+...+...+....+.+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 56677777777888888888888888887765 44455555555543 445666666666665554 222223
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 012539 129 ALVDMYSK----CGNMNKAMDFFWGMKER-NVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV 203 (461)
Q Consensus 129 ~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 203 (461)
.|...+.. ..+.+.|...++..... .......+...+... ....
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~-------------------------------~~~~ 123 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDG-------------------------------KVVT 123 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC-------------------------------SSSC
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCC-------------------------------Cccc
Confidence 33333332 23344444444433221 122222222222110 0012
Q ss_pred CcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChH
Q 012539 204 GLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGR----AGRLDEALDVINKMPMKPHAGAWGALLNACRM----YKNTE 275 (461)
Q Consensus 204 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~ 275 (461)
.....+...+..... ..+...+..|...|.. ..+...+...++......+......+...+.. ..+++
T Consensus 124 ~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 124 RDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred chhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchh
Confidence 233344444433322 1233344444444443 23344444444444222344444444444433 45788
Q ss_pred HHHHHHHHHhhccCCCcchHHHHHHHHhh----cCChhHHHHHHHHHHhCCCc
Q 012539 276 MGELASRKLVELETKNHGAYVLLSNIYAE----SKNWDRVINVRQIMKAKGVK 324 (461)
Q Consensus 276 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~ 324 (461)
.|...|++..+.+ ++.++..|..+|.+ ..+.++|.+.|++..+.|..
T Consensus 200 ~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 200 EALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 8888888887764 34577778888875 34788888888888777653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=2e-06 Score=68.33 Aligned_cols=91 Identities=12% Similarity=0.077 Sum_probs=81.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChh
Q 012539 232 LVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWD 309 (461)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 309 (461)
....|.+.|++++|...|++. ...| +...|..+...+...|++++|...|+++++++|.+..+|..++.+|...|+++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 456788999999999999988 3345 56688888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 012539 310 RVINVRQIMKAKG 322 (461)
Q Consensus 310 ~a~~~~~~m~~~g 322 (461)
+|...+++.....
T Consensus 96 eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 96 AALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcC
Confidence 9999999987743
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=3.4e-06 Score=63.41 Aligned_cols=103 Identities=16% Similarity=0.001 Sum_probs=76.9
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCCCH---HHHHHHHH
Q 012539 194 VSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGR---LDEALDVINKM-PMKPHA---GAWGALLN 266 (461)
Q Consensus 194 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p~~---~~~~~ll~ 266 (461)
..+++.+...+++++|.+.|+..++. -+.++.++..+..++.+.++ +++|..+++++ ...|+. .+|..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 35677777888888888888888753 23356778888888876554 45688888886 334433 26777888
Q ss_pred HHHhcCChHHHHHHHHHHhhccCCCcchHHHH
Q 012539 267 ACRMYKNTEMGELASRKLVELETKNHGAYVLL 298 (461)
Q Consensus 267 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 298 (461)
+|.+.|++++|...|+++++++|++..+...+
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~ 112 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 112 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 89999999999999999999999987555444
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.21 E-value=0.0012 Score=56.31 Aligned_cols=188 Identities=10% Similarity=-0.039 Sum_probs=123.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHhhCCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 012539 22 DVVCQTAMISACAKCGDVDLARKMFDEMPE-RDPIAWNAMLAGYAQ----CGKSREALHLFHLMQIHDVKLNEVSMVSVL 96 (461)
Q Consensus 22 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 96 (461)
|+..+..|...+-+.+++++|++.|++..+ .|..++..|...|.. ..++..|...+......+ +......+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence 577888888899999999999999998754 477788888888887 668999999999888766 333344443
Q ss_pred HHHh----ccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Q 012539 97 SACT----HLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK----CGNMNKAMDFFWGMK-ERNVYTWTSVIGGLAM 167 (461)
Q Consensus 97 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~ 167 (461)
..+. ...+.+.+...+....+.|... ....+...+.. ......|...+.... ..+...+..|...|..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~---a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~ 154 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYAE---GCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 154 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhhh---HHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhcc
Confidence 3333 3567889999999988876322 22234344443 345666666666544 3567777777777765
Q ss_pred ----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCcHHHHHHHHHHhhh
Q 012539 168 ----NGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV----VGLVEEGREHFDSMRR 218 (461)
Q Consensus 168 ----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~ 218 (461)
..+...+...++...+.| +......+...+.. ..+.++|..+|....+
T Consensus 155 ~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~ 210 (265)
T d1ouva_ 155 GRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE 210 (265)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred CCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhc
Confidence 334556666666665543 34444444444433 3456666666665543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=1.2e-05 Score=64.45 Aligned_cols=134 Identities=12% Similarity=0.004 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHH
Q 012539 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDL 235 (461)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 235 (461)
..+......+.+.|++++|+..|++....- |... +....-......+ ...+|..+..+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~~------------~~~~~~~~~~~~~--------~~~~~~nla~~ 71 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYES------------SFSNEEAQKAQAL--------RLASHLNLAMC 71 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCC------------CCCSHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhcc------------ccchHHHhhhchh--------HHHHHHHHHHH
Confidence 345556667888888888888888876531 1100 0000000111111 12356778888
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHH
Q 012539 236 YGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRV 311 (461)
Q Consensus 236 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 311 (461)
|.+.|++++|+..++.. ...| ++..|..+..++...|++++|...|+++.+++|+++.+...+..+..+.+...+.
T Consensus 72 y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 72 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 4455 6668888999999999999999999999999999998888888777665555443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=1.9e-05 Score=59.16 Aligned_cols=96 Identities=10% Similarity=-0.058 Sum_probs=64.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH---HHHHHHHHhcCCCC-----HHHHHHHHHH
Q 012539 93 VSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNM---NKAMDFFWGMKERN-----VYTWTSVIGG 164 (461)
Q Consensus 93 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~-----~~~~~~li~~ 164 (461)
..+++.+...+++++|++.|+..++.+ |.++.++..+..++.+.++. ++|+.+|+++...+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 345666667777777777777777765 55666666677777664443 45777777765422 2356677777
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHH
Q 012539 165 LAMNGAGEKSLELFSLMKQAGVRPNEV 191 (461)
Q Consensus 165 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ 191 (461)
|.+.|++++|++.|+++.+ +.|+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~ 106 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNN 106 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCH
Confidence 8888888888888888877 456543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.11 E-value=1e-05 Score=59.82 Aligned_cols=90 Identities=12% Similarity=-0.086 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 012539 58 NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKC 137 (461)
Q Consensus 58 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 137 (461)
..+...+.+.|++++|+..|++...... -+..+|..+..++.+.+++++|...+.++++.. |.+..++..+...|...
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccccc-ccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHC
Confidence 3445566667777777777777666431 145566666666666667777776666666654 44555666666666666
Q ss_pred CCHHHHHHHHHh
Q 012539 138 GNMNKAMDFFWG 149 (461)
Q Consensus 138 g~~~~A~~~~~~ 149 (461)
|++++|.+.|++
T Consensus 98 g~~~~A~~~l~~ 109 (112)
T d1hxia_ 98 HNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 666666666654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=4.1e-05 Score=61.16 Aligned_cols=62 Identities=10% Similarity=-0.031 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 260 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
+|+.+..+|.+.|++++|+..++++++++|.++.+|..++.+|...|++++|...|++..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 56677788999999999999999999999999999999999999999999999999998764
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.04 E-value=6.6e-05 Score=58.73 Aligned_cols=63 Identities=10% Similarity=-0.083 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 259 GAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 259 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
.+|..+..+|.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...|+...+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 366677778899999999999999999999999999999999999999999999999887663
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.00 E-value=7.5e-05 Score=59.46 Aligned_cols=141 Identities=11% Similarity=0.004 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHH
Q 012539 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQA-GVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234 (461)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 234 (461)
..+......+.+.|++++|+..|++.... ...++ ...+. ......+ ....|..+..
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~--------------~~~~~-~~~~~~~--------~~~~~~Nla~ 72 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYG--------------LSEKE-SKASESF--------LLAAFLNLAM 72 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--------------CCHHH-HHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc--------------cchhh-hhhcchh--------HHHHHHhHHH
Confidence 45556667777888888888888776541 00000 00000 0001111 1235667788
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhH-H
Q 012539 235 LYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDR-V 311 (461)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-a 311 (461)
+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...|+++.+++|+++.+...+..+....+...+ .
T Consensus 73 ~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~ 152 (168)
T d1kt1a1 73 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERD 152 (168)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 899999999999999887 3334 566888888999999999999999999999999998888887777766655443 4
Q ss_pred HHHHHHHH
Q 012539 312 INVRQIMK 319 (461)
Q Consensus 312 ~~~~~~m~ 319 (461)
.+++..|.
T Consensus 153 kk~~~~~f 160 (168)
T d1kt1a1 153 RRTYANMF 160 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.95 E-value=3.3e-05 Score=61.67 Aligned_cols=128 Identities=11% Similarity=0.068 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCcc-ChhHHHHHHHH
Q 012539 157 TWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEP-WLEHYGCLVDL 235 (461)
Q Consensus 157 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~ 235 (461)
.+......+.+.|++++|++.|++..+. ...........+. ..+.| ....+..+..+
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~----------~~~~~~~~~~~~nla~~ 86 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADG----------AKLQPVALSCVLNIGAC 86 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHH----------GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHH----------HHhChhhHHHHHHHHHH
Confidence 3455566778888888888888876541 0000000111000 01122 35567778889
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcC
Q 012539 236 YGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESK 306 (461)
Q Consensus 236 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 306 (461)
|.+.|++++|+..++++ ...| ++..|..+..++...|+++.|...|+++.+++|++..++..+..+..+..
T Consensus 87 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 159 (169)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999887 5555 45589999999999999999999999999999999888777776665443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=2e-06 Score=82.16 Aligned_cols=111 Identities=8% Similarity=-0.111 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHH
Q 012539 190 EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHA-GAWGALLNA 267 (461)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~ 267 (461)
...+..+...+.+.|+.++|...+...... .| ...+..+.+.+...|++++|...|++. ...|+. ..|+.|...
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAIL 195 (497)
T ss_dssp -----------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 444555555566666666666655544321 11 234556666677777777777777666 334543 366666666
Q ss_pred HHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhh
Q 012539 268 CRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAE 304 (461)
Q Consensus 268 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 304 (461)
+...|+..+|...|.+.+...|+.+.++..|...+.+
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 7777777777777777777776666666666666543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.90 E-value=8.4e-05 Score=58.12 Aligned_cols=126 Identities=10% Similarity=-0.081 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHH
Q 012539 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDL 235 (461)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 235 (461)
..+......+.+.|++++|+..|.+.... .|... ...-........ .....+|..+..+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~~~~~~~~~~--------~~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWDDQILLDKKK--------NIEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCCCHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh-----------hhhhHHHHHhhh--------hHHHHHHhhHHHH
Confidence 45666778888999999999999988763 11100 000000000000 0113467788889
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 012539 236 YGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIY 302 (461)
Q Consensus 236 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 302 (461)
|.+.|++++|++.+++. ...| +..+|..+..++...|++++|...|+++.+++|.+..+...+..+.
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999887 4445 5669999999999999999999999999999999987766655443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.87 E-value=0.0073 Score=53.05 Aligned_cols=246 Identities=15% Similarity=0.115 Sum_probs=146.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 012539 20 EPDVVCQTAMISACAKCGDVDLARKMFDEMPERDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSAC 99 (461)
Q Consensus 20 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 99 (461)
.||..--..+++-|.+.|.++.|..+|..+.. |.-++..+.+.+++..|.+++.+. -+..+|..+..+|
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l 79 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC 79 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHH
Confidence 35666666777888899999999999987664 667888889999999998887654 2567888888888
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHH
Q 012539 100 THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMK---ERNVYTWTSVIGGLAMNGAGEKSLE 176 (461)
Q Consensus 100 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 176 (461)
.+......+ ++.......++.....++..|-..|.+++...+++... ..+...++-++..|++.+ .++
T Consensus 80 ~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~k--- 150 (336)
T d1b89a_ 80 VDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQK--- 150 (336)
T ss_dssp HHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHH---
T ss_pred HhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHH---
Confidence 877665543 22233334455555678899999999999999998654 356677888998888864 233
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 012539 177 LFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDEALDVINKMPMKP 256 (461)
Q Consensus 177 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 256 (461)
+.+.+...+..-|. ..++..|.+.+. |.-++-.|.+.|++++|..++-.-+ +
T Consensus 151 l~e~l~~~s~~y~~---~k~~~~c~~~~l-----------------------~~elv~Ly~~~~~~~~A~~~~i~~~--~ 202 (336)
T d1b89a_ 151 MREHLELFWSRVNI---PKVLRAAEQAHL-----------------------WAELVFLYDKYEEYDNAIITMMNHP--T 202 (336)
T ss_dssp HHHHHHHHSTTSCH---HHHHHHHHTTTC-----------------------HHHHHHHHHHTTCHHHHHHHHHHST--T
T ss_pred HHHHHHhccccCCH---HHHHHHHHHcCC-----------------------hHHHHHHHHhcCCHHHHHHHHHHcc--h
Confidence 33333332112121 122333333333 3345566677777777776654432 3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHH
Q 012539 257 HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQ 316 (461)
Q Consensus 257 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 316 (461)
+..-...++..+.+..+.+..-++.....+..| .....|+......-+..+..+.++
T Consensus 203 ~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p---~~i~~lL~~v~~~~d~~r~V~~~~ 259 (336)
T d1b89a_ 203 DAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFS 259 (336)
T ss_dssp TTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHccCChHHHHHHHHHHHHcCH---HHHHHHHHHhccCCCHHHHHHHHH
Confidence 333445556667777777777776666665544 345566666666666666555554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=4.8e-05 Score=57.52 Aligned_cols=92 Identities=16% Similarity=0.116 Sum_probs=72.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcc-------hHHHHH
Q 012539 229 YGCLVDLYGRAGRLDEALDVINKM-PMKP-HAGAWGALLNACRMYKNTEMGELASRKLVELETKNHG-------AYVLLS 299 (461)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 299 (461)
+..+...|.+.|++++|+..|++. ...| +..+|..+..+|.+.|+++.|...++++++++|++.. +|..+.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 334667788888888888888777 3344 5668888888899999999999999999998887655 455566
Q ss_pred HHHhhcCChhHHHHHHHHHHh
Q 012539 300 NIYAESKNWDRVINVRQIMKA 320 (461)
Q Consensus 300 ~~~~~~g~~~~a~~~~~~m~~ 320 (461)
..+...+++++|.+.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 777888899999999887654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.82 E-value=0.00031 Score=55.67 Aligned_cols=62 Identities=8% Similarity=-0.027 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 260 AWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 260 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
+|+.+..++...|++++|+..++++++++|.+..+|..++.+|...|++++|.+.+++..+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56667777899999999999999999999999999999999999999999999999998764
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.82 E-value=7.8e-05 Score=59.94 Aligned_cols=117 Identities=13% Similarity=-0.042 Sum_probs=83.0
Q ss_pred HHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCH-HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 012539 197 LRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRL-DEALDVINKMPMKPHAGAWGALLNACRMYKNTE 275 (461)
Q Consensus 197 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 275 (461)
.......|++++|.+.|...+.- .+....-. +....-. .++..+ +. .....+..+...+...|+++
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l---~rG~~l~~-----~~~~~w~~~~r~~l-~~----~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALRE---WRGPVLDD-----LRDFQFVEPFATAL-VE----DKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT---CCSSTTGG-----GTTSTTHHHHHHHH-HH----HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh---Cccccccc-----CcchHHHHHHHHHH-HH----HHHHHHHHHHHHHHHCCCch
Confidence 34667789999999999888743 22211000 0000000 011111 10 12346778888899999999
Q ss_pred HHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHh-----CCCccC
Q 012539 276 MGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKA-----KGVKKL 326 (461)
Q Consensus 276 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~ 326 (461)
+|...++++.+.+|.+...|..++.+|.+.|++++|.+.|+++.+ .|+.|.
T Consensus 85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 999999999999999999999999999999999999999999844 577653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.79 E-value=0.00015 Score=57.68 Aligned_cols=108 Identities=10% Similarity=-0.043 Sum_probs=63.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC-------------------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 012539 26 QTAMISACAKCGDVDLARKMFDEMPE-------------------RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVK 86 (461)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~~~~~m~~-------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 86 (461)
+......+.+.|+++.|+..|.+..+ .+...|+.+..+|.+.|++++|+..+.+.++.. +
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p 108 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 108 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-h
Confidence 34456667788888888888876531 023345555666666666666666666666543 2
Q ss_pred cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 012539 87 LNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYS 135 (461)
Q Consensus 87 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 135 (461)
.+..+|..+..++...|++++|...+..+++.. |.+..+...|..++.
T Consensus 109 ~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 109 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQ 156 (169)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 244566666666666666666666666666653 334444444444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=0.0002 Score=53.97 Aligned_cols=59 Identities=10% Similarity=-0.036 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 012539 58 NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIER 117 (461)
Q Consensus 58 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 117 (461)
-.+...|.+.|++++|+..|.+.++.+ +.+...+..+..++.+.|++++|...+.++++
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 344445555555555555555555432 12344444444444555555555544444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=8.1e-06 Score=77.77 Aligned_cols=221 Identities=7% Similarity=-0.114 Sum_probs=114.5
Q ss_pred HHHHHHhcCC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHhhCCCCChh---HHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012539 10 YCQKVFDGIH--EPD-VVCQTAMISACAKCGDVDLARKMFDEMPERDPI---AWNAMLAGYAQCGKSREALHLFHLMQIH 83 (461)
Q Consensus 10 ~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 83 (461)
+|.+.|++.. +|| ..++..+..+|...|++++| |+++...|+. .++... ..-...+..+++.+++..+.
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~--~Lw~~~y~~~ie~~r~~~k~ 78 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQ--DLWNHAFKNQITTLQGQAKN 78 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHH--HHHHHHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHH--HHHHHHHHHHHHHHHHhccc
Confidence 4667776654 343 34555566677777777766 4444332322 111111 11111245667777776654
Q ss_pred CCCcCHHHHHHHHHHH--hccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCH-HHHHH
Q 012539 84 DVKLNEVSMVSVLSAC--THLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSKCGNMNKAMDFFWGMKERNV-YTWTS 160 (461)
Q Consensus 84 ~~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~ 160 (461)
...++.......+..+ ...+.++.+...+....+.. +++...+..+...+.+.|+.++|...++....++. .++..
T Consensus 79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 157 (497)
T d1ya0a1 79 RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVH 157 (497)
T ss_dssp SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHHHHHHHHH
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHH
Confidence 4334433222222221 22334444444444333332 34455667788888888888888877766554433 46777
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhc
Q 012539 161 VIGGLAMNGAGEKSLELFSLMKQAGVRPN-EVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRA 239 (461)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 239 (461)
+...+...|++++|+..|++..+. .|+ ...|+.|...+...|+..+|...|.+.+. --+|-+..+..|...|.+.
T Consensus 158 LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~--~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 158 LGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA--VKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHh
Confidence 888888899999999999998874 454 67888888888899999999998888764 3355677788888777654
Q ss_pred C
Q 012539 240 G 240 (461)
Q Consensus 240 g 240 (461)
.
T Consensus 234 ~ 234 (497)
T d1ya0a1 234 L 234 (497)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.53 E-value=0.00088 Score=53.50 Aligned_cols=72 Identities=8% Similarity=0.118 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhh----hcCCccChhH
Q 012539 156 YTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRR----EYGIEPWLEH 228 (461)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 228 (461)
..+..+...+...|++++|+..++++.+.. +-+...|..++.++...|+.++|.+.|+.+.+ +.|+.|+..+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 445555666666666666666666665531 22455566666666666666666666655432 2466666543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.52 E-value=0.00013 Score=56.40 Aligned_cols=127 Identities=12% Similarity=0.048 Sum_probs=77.1
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc----------CcHHHHHHHHHHhhhhcCCcc-ChhHHHHHH
Q 012539 165 LAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVV----------GLVEEGREHFDSMRREYGIEP-WLEHYGCLV 233 (461)
Q Consensus 165 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 233 (461)
|-+.+.+++|++.|+...+.. +.+...+..+..++... +.+++|...|+.+++ +.| +...|..+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~lG 82 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---hcchhhHHHhhHH
Confidence 445667788888888887742 33456666666666543 334566666666553 234 345555555
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHH
Q 012539 234 DLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVIN 313 (461)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 313 (461)
.+|...|++. ++... ..++++.|...|+++.+++|++...+..|... .+|.+
T Consensus 83 ~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~ 134 (145)
T d1zu2a1 83 NAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQ 134 (145)
T ss_dssp HHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHH
T ss_pred HHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHH
Confidence 5555443221 11111 11246889999999999999987655555544 36677
Q ss_pred HHHHHHhCCC
Q 012539 314 VRQIMKAKGV 323 (461)
Q Consensus 314 ~~~~m~~~g~ 323 (461)
++.+..++|+
T Consensus 135 ~~~e~~k~~~ 144 (145)
T d1zu2a1 135 LHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHSSS
T ss_pred HHHHHHHHhc
Confidence 7777777664
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.41 E-value=0.00044 Score=54.01 Aligned_cols=63 Identities=6% Similarity=-0.136 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhccCC-----------CcchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 259 GAWGALLNACRMYKNTEMGELASRKLVELETK-----------NHGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 259 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
..|+.+..+|...|++++|...+++.+++.|. ...+|..+..+|...|++++|.+.|++..+.
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777788888888888888877764332 1235778899999999999999999987653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.26 E-value=0.00093 Score=47.01 Aligned_cols=69 Identities=14% Similarity=0.029 Sum_probs=49.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHH
Q 012539 231 CLVDLYGRAGRLDEALDVINKM----P----MKPH-AGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLS 299 (461)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 299 (461)
.+...+.+.|++++|...|++. + ..++ ..+++.+..++.+.|++++|...++++++++|+++.++..+.
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 4455556666666666655544 1 1122 347788888899999999999999999999999887777664
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.24 E-value=0.00066 Score=52.17 Aligned_cols=71 Identities=4% Similarity=-0.145 Sum_probs=34.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcc----------CCHHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 012539 64 YAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHL----------GALDQGRWAHVYIERNRLKMTVTLGTALVDM 133 (461)
Q Consensus 64 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 133 (461)
|-+.+.+++|+..|++..+.. +.+..++..+..++... +.+++|...++++++.. |.+..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence 344555666777776666643 22444555555555433 22344455555554443 3333444444444
Q ss_pred HHh
Q 012539 134 YSK 136 (461)
Q Consensus 134 ~~~ 136 (461)
|..
T Consensus 85 y~~ 87 (145)
T d1zu2a1 85 YTS 87 (145)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.23 E-value=0.00036 Score=59.74 Aligned_cols=125 Identities=15% Similarity=0.044 Sum_probs=76.8
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcCCHHH
Q 012539 166 AMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAGRLDE 244 (461)
Q Consensus 166 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 244 (461)
.+.|++++|+..+++..+.. +-|...+..+...++..|++++|...++...+ +.|+ ...+..+...+...+..++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccHH
Confidence 35678888888888877742 33467777777888888888888888887764 2443 3444444444444444444
Q ss_pred HHHHHHhC--CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcch
Q 012539 245 ALDVINKM--PMKPHA-GAWGALLNACRMYKNTEMGELASRKLVELETKNHGA 294 (461)
Q Consensus 245 A~~~~~~~--~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 294 (461)
+..-.... ...|+. ..+......+...|+.++|...++++.+..|..+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 33322221 112322 233333444777888888888888888888776544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.13 E-value=0.0007 Score=57.84 Aligned_cols=52 Identities=12% Similarity=0.004 Sum_probs=26.5
Q ss_pred HcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 012539 66 QCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERN 118 (461)
Q Consensus 66 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 118 (461)
+.|++++|+..+++.++.. +-|...+..+...++..|++++|...++...+.
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3455555555555555532 224445555555555555555555555555544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.11 E-value=0.0027 Score=49.25 Aligned_cols=32 Identities=16% Similarity=-0.067 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhccCCC
Q 012539 260 AWGALLNACRMYKNTEMGELASRKLVELETKN 291 (461)
Q Consensus 260 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 291 (461)
.++.+..+|...|++++|...|+++.++.|..
T Consensus 102 a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 102 AVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 45667777889999999999999988876543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.84 E-value=0.0044 Score=43.29 Aligned_cols=63 Identities=10% Similarity=-0.054 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCC-------cchHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012539 259 GAWGALLNACRMYKNTEMGELASRKLVELETKN-------HGAYVLLSNIYAESKNWDRVINVRQIMKAK 321 (461)
Q Consensus 259 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 321 (461)
..+-.+...+.+.|+++.|...++++.+..|.+ ..++..|..+|.+.|++++|++.+++..+.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 334466777899999999999999998876543 346889999999999999999999998774
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.93 E-value=0.17 Score=36.30 Aligned_cols=141 Identities=8% Similarity=0.040 Sum_probs=102.7
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHHHHHhcCCHHH
Q 012539 165 LAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVDLYGRAGRLDE 244 (461)
Q Consensus 165 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 244 (461)
+...|..++..+++.+.... .+..-|+.++--....-+-+-..+.++.+-+-+.+. .++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHH
Confidence 45578888888888887663 355667777766666666666677777664433332 3455555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHHhCCCc
Q 012539 245 ALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVELETKNHGAYVLLSNIYAESKNWDRVINVRQIMKAKGVK 324 (461)
Q Consensus 245 A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 324 (461)
....+-.+. .+...+...++...+.|+-+.-.++++.+.+.+..++.....+.++|-+.|...++-+++.+..+.|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 555554443 345566677788889999999999999988877777888999999999999999999999999999985
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.15 E-value=0.3 Score=35.75 Aligned_cols=74 Identities=9% Similarity=-0.015 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHH
Q 012539 69 KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALVDMYSK----CGNMNKAM 144 (461)
Q Consensus 69 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 144 (461)
++++|++.|++..+.|. ......+. .....+.+++...+.+..+.| ++.....|..+|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 45666666666666552 11222221 122345556666665555544 22333334444433 23344444
Q ss_pred HHHHhc
Q 012539 145 DFFWGM 150 (461)
Q Consensus 145 ~~~~~~ 150 (461)
++|+..
T Consensus 80 ~~~~~a 85 (133)
T d1klxa_ 80 QYYSKA 85 (133)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 444443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.06 E-value=1.2 Score=40.29 Aligned_cols=182 Identities=8% Similarity=-0.096 Sum_probs=86.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh--cCcHH
Q 012539 130 LVDMYSKCGNMNKAMDFFWGMKERNVYTWTSVIGGLAMNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCV--VGLVE 207 (461)
Q Consensus 130 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g~~~ 207 (461)
-+......|+...|..+...+...........+....+ ...+..... . ..++......+..+..+ ..+.+
T Consensus 160 R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~---~--~~~~~~~~~~~~~~l~rla~~d~~ 231 (450)
T d1qsaa1 160 RIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFAR---T--TGATDFTRQMAAVAFASVARQDAE 231 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHH---H--SCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHh---c--CCCChhhhHHHHHHHHHHhccChh
Confidence 34455556677777777766654444444444444322 122221111 1 12232322223333332 24566
Q ss_pred HHHHHHHHhhhhcCCccChh--HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 012539 208 EGREHFDSMRREYGIEPWLE--HYGCLVDLYGRAGRLDEALDVINKM-PMKPHAGAWGALLNACRMYKNTEMGELASRKL 284 (461)
Q Consensus 208 ~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 284 (461)
.+..++..........++.. ....+...+...+..+.+...+... ....+.....-.+......++...+...++.+
T Consensus 232 ~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l 311 (450)
T d1qsaa1 232 NARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARL 311 (450)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHHHHHHhc
Confidence 66666666554323322211 1111222223345556666655544 11223333333444445556777777666665
Q ss_pred hhccCCCcchHHHHHHHHhhcCChhHHHHHHHHHH
Q 012539 285 VELETKNHGAYVLLSNIYAESKNWDRVINVRQIMK 319 (461)
Q Consensus 285 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 319 (461)
.......+....=+..++...|+.++|...|....
T Consensus 312 ~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 312 PMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp CTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 43322333445566677777777777777777654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.59 E-value=0.37 Score=34.49 Aligned_cols=61 Identities=11% Similarity=0.076 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 012539 58 NAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNR 119 (461)
Q Consensus 58 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 119 (461)
+..+....++|+-++-.++++.+.+.+ +|++.....+..||.+.|+..++..++.++-+.|
T Consensus 90 dlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 90 NKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 333444444444444444444443322 4444444444445555555444444444444444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.18 E-value=0.27 Score=35.98 Aligned_cols=104 Identities=8% Similarity=-0.096 Sum_probs=55.9
Q ss_pred CHHHHHHHHhhCCC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhc----cCCHHHHHHHH
Q 012539 38 DVDLARKMFDEMPE-RDPIAWNAMLAGYAQCGKSREALHLFHLMQIHDVKLNEVSMVSVLSACTH----LGALDQGRWAH 112 (461)
Q Consensus 38 ~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~ 112 (461)
++++|.+.|++..+ .++.....|.. ....+.++|+..|++..+.| +......+...+.. ..+.+.|...+
T Consensus 8 d~~~A~~~~~kaa~~g~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~ 82 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYY 82 (133)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHH
Confidence 45566666665432 23444444432 23456777888887777765 33444444444432 34677777888
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHh
Q 012539 113 VYIERNRLKMTVTLGTALVDMYSK----CGNMNKAMDFFWG 149 (461)
Q Consensus 113 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 149 (461)
....+.| ++.....|..+|.. ..+.++|.++|+.
T Consensus 83 ~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~ 120 (133)
T d1klxa_ 83 SKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 120 (133)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred hhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHH
Confidence 7777766 22333445555544 2345555555443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.46 E-value=1.1 Score=32.02 Aligned_cols=68 Identities=10% Similarity=-0.009 Sum_probs=31.4
Q ss_pred ChhHHHHHHHHHHhcC---CHHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCChHHHHHHHHHHhhccCCCc
Q 012539 225 WLEHYGCLVDLYGRAG---RLDEALDVINKM-PMKP-HA-GAWGALLNACRMYKNTEMGELASRKLVELETKNH 292 (461)
Q Consensus 225 ~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~p-~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 292 (461)
++.+--...-++.+.. +++++..+++++ ...| +. ..+..|.-+|.+.|+++.|.+.++++++.+|.+.
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~ 107 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 107 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence 3333333444444332 234455555544 1122 11 2334444445555555555555555555555554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.32 E-value=1.3 Score=31.53 Aligned_cols=53 Identities=13% Similarity=0.048 Sum_probs=30.4
Q ss_pred CcHHHHHHHHHHhhhhcCCccC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 012539 204 GLVEEGREHFDSMRREYGIEPW-LEHYGCLVDLYGRAGRLDEALDVINKM-PMKPHA 258 (461)
Q Consensus 204 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 258 (461)
.+.++|..+++.+.+. .+.+ ...+-.|.-+|.+.|++++|.+.++.+ .+.|+.
T Consensus 52 ~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n 106 (124)
T d2pqrb1 52 NDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 106 (124)
T ss_dssp HHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence 4556677777766542 1222 234445566677777777777777666 444543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.81 E-value=2 Score=28.96 Aligned_cols=63 Identities=13% Similarity=0.194 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhhhcCCccChhHHHHHHH
Q 012539 170 AGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWLEHYGCLVD 234 (461)
Q Consensus 170 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 234 (461)
+.-++.+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+.| ++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 3456677777777777889999999999999999999999999998865433 34556666553
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.83 E-value=2.8 Score=28.19 Aligned_cols=62 Identities=10% Similarity=0.046 Sum_probs=43.7
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 012539 69 KSREALHLFHLMQIHDVKLNEVSMVSVLSACTHLGALDQGRWAHVYIERNRLKMTVTLGTALV 131 (461)
Q Consensus 69 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 131 (461)
+.-++.+-++.+...++.|++....+.+.||-+.+++..|.++++-+.... .++...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 344566667777777788888888888888888888888888888776432 22344555443
|