Citrus Sinensis ID: 012577
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 460 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C977 | 596 | Pentatricopeptide repeat- | yes | no | 1.0 | 0.771 | 0.615 | 1e-177 | |
| Q9XI21 | 594 | Pentatricopeptide repeat- | no | no | 0.989 | 0.765 | 0.593 | 1e-160 | |
| Q9LRP6 | 610 | Pentatricopeptide repeat- | no | no | 0.986 | 0.744 | 0.539 | 1e-143 | |
| O22714 | 491 | Pentatricopeptide repeat- | no | no | 0.941 | 0.881 | 0.255 | 2e-37 | |
| Q8LPS6 | 524 | Pentatricopeptide repeat- | no | no | 0.860 | 0.755 | 0.256 | 4e-34 | |
| Q84JR3 | 492 | Pentatricopeptide repeat- | no | no | 0.884 | 0.827 | 0.262 | 5e-33 | |
| Q940Q2 | 534 | Pentatricopeptide repeat- | no | no | 0.928 | 0.799 | 0.230 | 2e-31 | |
| Q9SY07 | 532 | Pentatricopeptide repeat- | no | no | 0.956 | 0.827 | 0.245 | 5e-31 | |
| Q3E911 | 491 | Pentatricopeptide repeat- | no | no | 0.934 | 0.875 | 0.264 | 3e-28 | |
| Q9SKU6 | 490 | Pentatricopeptide repeat- | no | no | 0.867 | 0.814 | 0.274 | 6e-28 |
| >sp|Q9C977|PP135_ARATH Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 623 bits (1606), Expect = e-177, Method: Compositional matrix adjust.
Identities = 283/460 (61%), Positives = 379/460 (82%)
Query: 1 MDAPDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIE 60
+ AP +SI S L K+ EEGN+++R EIA AM LR RRMYG+ALQ+SEWLE NKK++ E
Sbjct: 137 VSAPGLSIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQMSEWLEANKKIEMTE 196
Query: 61 RDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMK 120
RDYAS LDL K+RGL+K E+ +QKIP+SF+GEV+YRTLLANCVA NVKK+E VFN+MK
Sbjct: 197 RDYASRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSELVFNKMK 256
Query: 121 DKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTG 180
D GFP++ F C+Q+L+L+KR+D+KK+ADVLLLMEKEN+K + +YKILID+KG +ND++G
Sbjct: 257 DLGFPLSGFTCDQMLLLHKRIDRKKIADVLLLMEKENIKPSLLTYKILIDVKGATNDISG 316
Query: 181 MDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLP 240
M+Q++E MK EG+E D TQA+ A+HY G K+KAE +LKEMEG++L+ +R + LL
Sbjct: 317 MEQILETMKDEGVELDFQTQALTARHYSGAGLKDKAEKVLKEMEGESLEANRRAFKDLLS 376
Query: 241 LYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTK 300
+YA LG+ D+V RIWK+CES P+ + +AAI+A+GKLNKV+EAEA+F+++ K ++ S+
Sbjct: 377 IYASLGREDEVKRIWKICESKPYFEESLAAIQAFGKLNKVQEAEAIFEKIVKMDRRASSS 436
Query: 301 HYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKA 360
Y+ LL+VY DHKMLSKGKDLVK+MAESGC I WDAL+KL+VE GEVEKADS+L KA
Sbjct: 437 TYSVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEKADSLLDKA 496
Query: 361 QQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT 420
+Q+ K M +S+M IMD+Y+KRGD+H+TEKIF +MR+ GY +R +QFQ L+QAYINAK+
Sbjct: 497 SKQSHTKLMMNSFMYIMDEYSKRGDVHNTEKIFLKMREAGYTSRLRQFQALMQAYINAKS 556
Query: 421 PAYGIRDRMRADNVFPNKALAAQVAQVDAFRKTAVSELLD 460
PAYG+RDR++ADN+FPNK++AAQ+AQ D F+KTA+S++LD
Sbjct: 557 PAYGMRDRLKADNIFPNKSMAAQLAQGDPFKKTAISDILD 596
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XI21|PPR44_ARATH Pentatricopeptide repeat-containing protein At1g15480, mitochondrial OS=Arabidopsis thaliana GN=At1g15480 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 563 bits (1451), Expect = e-160, Method: Compositional matrix adjust.
Identities = 270/455 (59%), Positives = 365/455 (80%)
Query: 6 ISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYAS 65
+S+ S L K+ E+G D +R E AM LR RRM+G+ALQ++EWL+ NK+ + ERDYA
Sbjct: 140 LSVGSALDKWVEQGKDTNRKEFESAMLQLRKRRMFGRALQMTEWLDENKQFEMEERDYAC 199
Query: 66 CLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFP 125
LDLI+K+RG K E+YI+ IPESFRGE+VYRTLLAN VA +NV+ AE VFN+MKD GFP
Sbjct: 200 RLDLISKVRGWYKGEAYIKTIPESFRGELVYRTLLANHVATSNVRTAEAVFNKMKDLGFP 259
Query: 126 VTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVV 185
+++F CNQ+LILYKR+DKKK+ADVLLL+EKEN+K +YKILID KG SND+TGM+Q+V
Sbjct: 260 LSTFTCNQMLILYKRVDKKKIADVLLLLEKENLKPNLNTYKILIDTKGSSNDITGMEQIV 319
Query: 186 EAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAEL 245
E MKSEG+E D +A++A+HY S G KEKAE +LKEMEG++L+E+R C+ LL +Y L
Sbjct: 320 ETMKSEGVELDLRARALIARHYASAGLKEKAEKVLKEMEGESLEENRHMCKDLLSVYGYL 379
Query: 246 GKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTAL 305
+ D+V R+WK+CE NP + +AAI A+GK++KV++AEAVF+++ K ++S+ Y+ L
Sbjct: 380 QREDEVRRVWKICEENPRYNEVLAAILAFGKIDKVKDAEAVFEKVLKMSHRVSSNVYSVL 439
Query: 306 LKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNK 365
L+VY DHKM+S+GKDLVKQM++SGC+IG L WDA++KL+VE GEVEKA+S L KA Q +
Sbjct: 440 LRVYVDHKMVSEGKDLVKQMSDSGCNIGALTWDAVIKLYVEAGEVEKAESSLSKAIQSKQ 499
Query: 366 FKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGI 425
KP+ SS+M +M +Y +RGD+H+TEKIF RM+Q GY +RF +QTL+QAY+NAK PAYG+
Sbjct: 500 IKPLMSSFMYLMHEYVRRGDVHNTEKIFQRMKQAGYQSRFWAYQTLIQAYVNAKAPAYGM 559
Query: 426 RDRMRADNVFPNKALAAQVAQVDAFRKTAVSELLD 460
++RM+ADN+FPNK LAAQ+A+ D F+KT +S+LLD
Sbjct: 560 KERMKADNIFPNKRLAAQLAKADPFKKTPLSDLLD 594
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRP6|PP234_ARATH Pentatricopeptide repeat-containing protein At3g15590, mitochondrial OS=Arabidopsis thaliana GN=At3g15590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 509 bits (1312), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/454 (53%), Positives = 347/454 (76%)
Query: 7 SIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASC 66
S+ L K+ +EG DLS+AE+ LA+ NLR R+ Y LQL EWL N + +F E +YAS
Sbjct: 156 SVKHVLEKWVKEGKDLSQAEVTLAIHNLRKRKSYAMCLQLWEWLGANTQFEFTEANYASQ 215
Query: 67 LDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPV 126
LDL+AK+ LQKAE +++ IPES RGEVVYRTLLANCV ++V KAE++FN+MK+ FP
Sbjct: 216 LDLVAKVHSLQKAEIFLKDIPESSRGEVVYRTLLANCVLKHHVNKAEDIFNKMKELKFPT 275
Query: 127 TSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVE 186
+ FACNQLL+LY D+KK++DVLLLME+EN+K ++ +Y LI+ KG + D+TGM+++VE
Sbjct: 276 SVFACNQLLLLYSMHDRKKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGMEKIVE 335
Query: 187 AMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELG 246
+K EGIE D Q+ILAK+Y+ G KE+A+ ++KE+EG L++ W CR LLPLYA++G
Sbjct: 336 TIKEEGIELDPELQSILAKYYIRAGLKERAQDLMKEIEGKGLQQTPWVCRSLLPLYADIG 395
Query: 247 KADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALL 306
+D V R+ + + NP D C++AI+AWGKL +VEEAEAVF+R+ + +K Y AL+
Sbjct: 396 DSDNVRRLSRFVDQNPRYDNCISAIKAWGKLKEVEEAEAVFERLVEKYKIFPMMPYFALM 455
Query: 307 KVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKF 366
++Y ++KML+KG+DLVK+M +G IGP W ALVKL+++ GEV KA+ IL +A + NK
Sbjct: 456 EIYTENKMLAKGRDLVKRMGNAGIAIGPSTWHALVKLYIKAGEVGKAELILNRATKDNKM 515
Query: 367 KPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGIR 426
+PMF++YM I+++YAKRGD+H+TEK+F +M++ Y A+ Q++T++ AYINAKTPAYG+
Sbjct: 516 RPMFTTYMAILEEYAKRGDVHNTEKVFMKMKRASYAAQLMQYETVLLAYINAKTPAYGMI 575
Query: 427 DRMRADNVFPNKALAAQVAQVDAFRKTAVSELLD 460
+RM+ADNVFPNK+LAA++AQV+ F+K VS LLD
Sbjct: 576 ERMKADNVFPNKSLAAKLAQVNPFKKCPVSVLLD 609
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/446 (25%), Positives = 217/446 (48%), Gaps = 13/446 (2%)
Query: 5 DISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYA 64
++ + L ++ + + + E+ + LR R +Y AL+LSE +E + ++ D A
Sbjct: 36 EVKVRQQLNQFLKGTKHVFKWEVGDTIKKLRNRGLYYPALKLSEVME-ERGMNKTVSDQA 94
Query: 65 SCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNV-KKAEEVFNRMKDKG 123
LDL+AK R + E+Y +PE+ + E+ Y +LL NC + +KAE + N+MK+
Sbjct: 95 IHLDLVAKAREITAGENYFVDLPETSKTELTYGSLL-NCYCKELLTEKAEGLLNKMKELN 153
Query: 124 FPVTSFACNQLLILYKRL-DKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMD 182
+S + N L+ LY + + +KV ++ ++ ENV ++Y + + +ND++G++
Sbjct: 154 ITPSSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVE 213
Query: 183 QVVEAMKSEG-IEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPL 241
+V+E M +G + PD +T + +A YV G +KAE L+E+E N + + L+ L
Sbjct: 214 RVIEEMNRDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAYQFLITL 273
Query: 242 YAELGKADQVARIW---KLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLS 298
Y LGK +V RIW +L + I+ KLN + AE +FK
Sbjct: 274 YGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYD 333
Query: 299 TKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILL 358
+ L+ YA ++ K +L ++ G + W+ + +V+ G++ +A +
Sbjct: 334 IRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMDYYVKSGDMARALECMS 393
Query: 359 KA-----QQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQ 413
KA K+ P + +M + ++ D++ E + ++ + F+ L++
Sbjct: 394 KAVSIGKGDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEILKNGTDNIGAEIFEPLIR 453
Query: 414 AYINAKTPAYGIRDRMRADNVFPNKA 439
Y A +R R++ +NV N+A
Sbjct: 454 TYAAAGKSHPAMRRRLKMENVEVNEA 479
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 106/413 (25%), Positives = 194/413 (46%), Gaps = 17/413 (4%)
Query: 1 MDAPDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLET-NKKLDFI 59
M+ P++ S L ++ + G L++ E+ + LR + +AL++ +W+ ++
Sbjct: 76 MEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNNRGERFRLS 135
Query: 60 ERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRM 119
D A LDLI K+RG+ AE + ++PE+F+ VY +LL V + +KAE + N M
Sbjct: 136 ASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTM 195
Query: 120 KDKGFPVTSFACNQLLILYKRLDKKKVADVLLL-MEKENVKLTQFSYKILIDIKGQSNDL 178
+DKG+ + N ++ LY L + D ++ M++++++L +SY I + G +
Sbjct: 196 RDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSV 255
Query: 179 TGMDQVVEAMKSE-GIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRL 237
M+ V + MKS+ I P+ +T + +A Y+ G EKAE L+++E +R
Sbjct: 256 EKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITGRNRIPYHY 315
Query: 238 LLPLYAELGKADQVARIW----KLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT 293
LL LY LG ++ R+W + S P L A + + ++ +E AE V++
Sbjct: 316 LLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGY-HALVSSLVRMGDIEGAEKVYEEWLPV 374
Query: 294 WKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKA 353
+ L+ Y + L + L M E G W+ L H + +A
Sbjct: 375 KSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTRKRCISEA 434
Query: 354 DSIL---LKAQQQNKFKP---MFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400
+ L A+ + ++P M S + + ++ D+ S E + +RQ G
Sbjct: 435 LTCLRNAFSAEGSSNWRPKVLMLSGFFKLCEE---ESDVTSKEAVLELLRQSG 484
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (358), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 112/427 (26%), Positives = 199/427 (46%), Gaps = 20/427 (4%)
Query: 4 PDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDY 63
P S++ L + + G +S AE+ + +LR R+ + AL++S+W+ F ++
Sbjct: 37 PKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALEVSKWMNETGVCVFSPTEH 96
Query: 64 ASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKG 123
A LDLI ++ G AE Y + + E ++ + Y LL V NV+K+ F +MK+ G
Sbjct: 97 AVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKMKEMG 156
Query: 124 FPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMD 182
F +S N ++ LY + + +KV VL M++ENV +SY+I I+ G DL +
Sbjct: 157 FVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDLERIG 216
Query: 183 QVVEAM-KSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPL 241
+ M + + I D +T A+ AK Y+ GG ++A +LK E K+ L+ L
Sbjct: 217 GTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMSENRLEKKDGEGYNHLITL 276
Query: 242 YAELGKADQVARIWKLCESNPWLDVC--------MAAIEAWGKLNKVEEAEAVFKRMSKT 293
YA LGK +V R+W L + DVC + +++ K++ + EAE V +
Sbjct: 277 YARLGKKIEVLRLWDLEK-----DVCKRRINQDYLTVLQSLVKIDALVEAEEVLTEWKSS 331
Query: 294 WKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKA 353
+ +++ Y M K + +++ +A G P +W+ + + E G +E A
Sbjct: 332 GNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPESWELVATAYAEKGTLENA 391
Query: 354 DSILLKA----QQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQ 409
+ A K++P + ++ G + E +R V + + +
Sbjct: 392 FKCMKTALGVEVGSRKWRPGLTLVTSVLSWVGDEGSLKEVESFVASLRNCIGVNK-QMYH 450
Query: 410 TLVQAYI 416
LV+A I
Sbjct: 451 ALVKADI 457
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q940Q2|PPR19_ARATH Pentatricopeptide repeat-containing protein At1g07590, mitochondrial OS=Arabidopsis thaliana GN=At1g07590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/446 (23%), Positives = 206/446 (46%), Gaps = 19/446 (4%)
Query: 6 ISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYAS 65
+++ S L + +G + ++ A+ LR +AL+L EW+ + E +Y+
Sbjct: 79 VTVGSALQSWMGDGFPVHGGDVYHAINRLRKLGRNKRALELMEWIIRERPYRLGELEYSY 138
Query: 66 CLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFP 125
L+ KL G+ + E ++P+ F+ E++Y L+ C+ ++ A E +M++ G+
Sbjct: 139 LLEFTVKLHGVSQGEKLFTRVPQEFQNELLYNNLVIACLDQGVIRLALEYMKKMRELGYR 198
Query: 126 VTSFACNQLLILYKRLDKKK-VADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQV 184
+ N+L+I ++K +A L LM+ + +Y IL+ ++ +++ G+ +
Sbjct: 199 TSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHILMKLEANEHNIDGVLKA 258
Query: 185 VEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEME----GDNLKEHRW-TCRLLL 239
+ MK G+EP+ + ILA + AEA +E+E GDN W T +L+
Sbjct: 259 FDGMKKAGVEPNEVSYCILAMAHAVARLYTVAEAYTEEIEKSITGDN-----WSTLDILM 313
Query: 240 PLYAELGKADQVARIWKLCESNPWL--DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKL 297
LY LGK ++AR W + + + A EA+ ++ ++ AE ++ M
Sbjct: 314 ILYGRLGKEKELARTWNVIRGFHHVRSKSYLLATEAFARVGNLDRAEELWLEMKNVKGLK 373
Query: 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDAL------VKLHVEGGEVE 351
T+ + +LL VY ++ K + ++M +G + + L KL E +
Sbjct: 374 ETEQFNSLLSVYCKDGLIEKAIGVFREMTGNGFKPNSITYRHLALGCAKAKLMKEALKNI 433
Query: 352 KADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTL 411
+ L ++ P + + I++ +A++GD+ ++EK+F ++ Y + L
Sbjct: 434 EMGLNLKTSKSIGSSTPWLETTLSIIECFAEKGDVENSEKLFEEVKNAKYNRYAFVYNAL 493
Query: 412 VQAYINAKTPAYGIRDRMRADNVFPN 437
+AY+ AK + RM P+
Sbjct: 494 FKAYVKAKVYDPNLFKRMVLGGARPD 519
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 135 bits (341), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 113/461 (24%), Positives = 212/461 (45%), Gaps = 21/461 (4%)
Query: 11 TLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLI 70
T+ K+ EEG+ + + E+ + LR + Y AL++ EW+ + + DYA LDLI
Sbjct: 80 TIRKWKEEGHSVRKYELNRIVRELRKIKRYKHALEICEWMVVQEDIKLQAGDYAVHLDLI 139
Query: 71 AKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFA 130
+K+RGL AE + + +P+ RG +LL + V KAE +F +M + GF +
Sbjct: 140 SKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLP 199
Query: 131 CNQLLILYKRLDKKKVADVLLLMEKENVKLTQ--FSYKILIDIKGQSNDLTGMDQVVEAM 188
N +L +Y + + + V +L+++ ++ + +Y + + ND+ G ++V
Sbjct: 200 YNHMLSMY--ISRGQFEKVPVLIKELKIRTSPDIVTYNLWLTAFASGNDVEGAEKVYLKA 257
Query: 189 KSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKA 248
K E + PD T ++L Y EKA LKEME K++R L+ L+A LG
Sbjct: 258 KEEKLNPDWVTYSVLTNLYAKTDNVEKARLALKEMEKLVSKKNRVAYASLISLHANLGDK 317
Query: 249 DQVARIWKLCESN-------PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKH 301
D V WK +S+ +L + A + KL + E+A+ ++ +
Sbjct: 318 DGVNLTWKKVKSSFKKMNDAEYLSMISAVV----KLGEFEQAKGLYDEWESVSGTGDARI 373
Query: 302 YTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQ 361
+L Y + + G+ +++ E G + W+ L +++ ++EK KA
Sbjct: 374 PNLILAEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKDMEKVLDCFGKA- 432
Query: 362 QQNKFKPMFSSYMLI---MDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINA 418
+ K + L+ + ++G++ EK+ +++ GYV + + +L++ Y A
Sbjct: 433 -IDSVKKWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYV-NTQLYNSLLRTYAKA 490
Query: 419 KTPAYGIRDRMRADNVFPNKALAAQVAQVDAFRKTAVSELL 459
A + +RM DNV ++ + R T +S +
Sbjct: 491 GEMALIVEERMAKDNVELDEETKELIRLTSQMRVTEISSTI 531
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E911|PP400_ARATH Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 117/443 (26%), Positives = 205/443 (46%), Gaps = 13/443 (2%)
Query: 2 DAPDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIER 61
+ P S+ S L + + G+ +S +E+ L L Y ALQ+ EW+E K ++F
Sbjct: 48 NGPRRSVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLALQMMEWMENQKDIEFSVY 107
Query: 62 DYASCLDLIAKLRGLQKAESYIQKIPESFRGEVV----YRTLLANCVAGNNVKKAEEVFN 117
D A LDLI K GL++ E Y +K+ S V Y LL V VK+AE +
Sbjct: 108 DIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYVKNKMVKEAEALME 167
Query: 118 RMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSN 176
++ GF VT N+++ LY+ + +KV V+ +M+ + SY + ++ + +
Sbjct: 168 KLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWMNACCEVS 227
Query: 177 DLTGMDQVVEAMKSE-GIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTC 235
+ ++ V + M + +E S+ LA Y+ G EKA +L++ E + +R
Sbjct: 228 GVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLEDAEKMLNRSNRLGY 287
Query: 236 RLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNK---VEEAEAVFKRMSK 292
L+ LYA LG + V R+W++ +S C+ I L K +EEAE VF
Sbjct: 288 FFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAERVFSEWEA 347
Query: 293 TWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEK 352
+ LL Y + + K + L + E G W+ L++ V+ +EK
Sbjct: 348 QCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWEILMEGWVKCENMEK 407
Query: 353 A-DSI--LLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQ 409
A D++ + ++ ++P + M I + + K I + ++G +A ++
Sbjct: 408 AIDAMHQVFVLMRRCHWRPSHNIVMAIAEYFEKEEKIEEATAYVRDLHRLG-LASLPLYR 466
Query: 410 TLVQAYINAKTPAYGIRDRMRAD 432
L++ + +AK PAY I + M+ D
Sbjct: 467 LLLRMHEHAKRPAYDIYEMMKLD 489
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (314), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 112/408 (27%), Positives = 192/408 (47%), Gaps = 9/408 (2%)
Query: 4 PDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDY 63
P SI L + ++GN + +E+ + LR + ALQ+S+W+ ++ + E D
Sbjct: 50 PSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISDWMSEHRVHEISEGDV 109
Query: 64 ASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNV-KKAEEVFNRMKDK 122
A LDLIAK+ GL +AE + + IP R +Y LL NC A V KAE+VF MK+
Sbjct: 110 AIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALL-NCYASKKVLHKAEQVFQEMKEL 168
Query: 123 GFPVTSFACNQLLILYKRLDKKKVADVLLL-MEKENVKLTQFSYKILIDIKGQSNDLTGM 181
GF N +L LY R K + + LL ME E VK F+ + +D+ GM
Sbjct: 169 GFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVVSDVEGM 228
Query: 182 DQ-VVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEG-DNLKEHRWTCRLLL 239
++ ++ +G+ D T A A Y+ G EKA ML++ E N ++ + +L+
Sbjct: 229 EKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNAQKRKHAYEVLM 288
Query: 240 PLYAELGKADQVARIWKLC-ESNPWLDVC-MAAIEAWGKLNKVEEAEAVFKRMSKTWKKL 297
Y GK ++V R+W L E + + + ++ I A K++ +EE E + +
Sbjct: 289 SFYGAAGKKEEVYRLWSLYKELDGFYNTGYISVISALLKMDDIEEVEKIMEEWEAGHSLF 348
Query: 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSIL 357
+ L+ Y M+ K +++V + + W+ L + G++EKA
Sbjct: 349 DIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYKMAGKMEKAVEKW 408
Query: 358 LKAQQQNK--FKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVA 403
+A + +K ++P M +D + D+ KI + + G+++
Sbjct: 409 KRAIEVSKPGWRPHQVVLMSCVDYLEGQRDMEGLRKILRLLSERGHIS 456
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 460 | ||||||
| 224089975 | 555 | predicted protein [Populus trichocarpa] | 1.0 | 0.828 | 0.726 | 0.0 | |
| 225441211 | 587 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.783 | 0.726 | 0.0 | |
| 297739953 | 624 | unnamed protein product [Vitis vinifera] | 1.0 | 0.737 | 0.726 | 0.0 | |
| 224137686 | 472 | predicted protein [Populus trichocarpa] | 1.0 | 0.974 | 0.702 | 0.0 | |
| 357509403 | 623 | Pentatricopeptide repeat-containing prot | 0.997 | 0.736 | 0.643 | 0.0 | |
| 356498381 | 609 | PREDICTED: pentatricopeptide repeat-cont | 0.995 | 0.752 | 0.668 | 1e-180 | |
| 297842839 | 597 | hypothetical protein ARALYDRAFT_477224 [ | 1.0 | 0.770 | 0.628 | 1e-179 | |
| 15220095 | 596 | pentatricopeptide repeat-containing prot | 1.0 | 0.771 | 0.615 | 1e-176 | |
| 449506011 | 613 | PREDICTED: pentatricopeptide repeat-cont | 0.995 | 0.747 | 0.640 | 1e-174 | |
| 356534606 | 600 | PREDICTED: pentatricopeptide repeat-cont | 0.997 | 0.765 | 0.645 | 1e-174 |
| >gi|224089975|ref|XP_002308888.1| predicted protein [Populus trichocarpa] gi|222854864|gb|EEE92411.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/460 (72%), Positives = 399/460 (86%)
Query: 1 MDAPDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIE 60
+ A D+S+ S L K+ EG DL R EI+ AM NLR RRM+G+ALQLSEW E NK +F+E
Sbjct: 96 VSASDVSVQSVLDKWVAEGKDLDRLEISNAMINLRKRRMFGRALQLSEWFEANKPQEFVE 155
Query: 61 RDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMK 120
RDYAS LDLIAK+RGL KAE YI KIP+SF+GEV+YRTLLANCV +NVKKAEEVFN+M+
Sbjct: 156 RDYASRLDLIAKVRGLHKAEVYIDKIPKSFKGEVIYRTLLANCVVDHNVKKAEEVFNKMR 215
Query: 121 DKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTG 180
D FP+T FACNQLL+LYKRLDKKK+ADVLLLMEKENVK + F+YKILID KGQSND+TG
Sbjct: 216 DLEFPITPFACNQLLLLYKRLDKKKIADVLLLMEKENVKPSLFTYKILIDTKGQSNDMTG 275
Query: 181 MDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLP 240
MDQ+VE MK+EGIEPD TQAI+A+HYVSGG KEKAEA+LKEMEG NL+EHRW CR +LP
Sbjct: 276 MDQIVETMKAEGIEPDIRTQAIMARHYVSGGLKEKAEAILKEMEGGNLEEHRWACRFMLP 335
Query: 241 LYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTK 300
LY LGKAD+V+R+WK CE +P LD CMAAIEAWG+L K++EAEAVF+ MSKTWKKLS++
Sbjct: 336 LYGALGKADEVSRVWKFCEKSPRLDECMAAIEAWGRLKKIDEAEAVFELMSKTWKKLSSR 395
Query: 301 HYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKA 360
HY+ LLKVYA+HKMLSKGKDL+K+M +SGC IGPL WDALVKL+VE GEVEKADSIL KA
Sbjct: 396 HYSTLLKVYANHKMLSKGKDLIKRMGDSGCRIGPLTWDALVKLYVEAGEVEKADSILNKA 455
Query: 361 QQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT 420
QQNK KPM+SS+++IM++YA +GDIH+ EK+FHRMRQ GY AR +QFQTL+QAYI AK
Sbjct: 456 VQQNKIKPMYSSFLIIMERYATKGDIHNAEKMFHRMRQAGYQARIRQFQTLIQAYIIAKA 515
Query: 421 PAYGIRDRMRADNVFPNKALAAQVAQVDAFRKTAVSELLD 460
P YG+R+R++AD +FPNK+LAAQ+AQVDAFR+TAVS+LLD
Sbjct: 516 PCYGMRERLKADGIFPNKSLAAQLAQVDAFRRTAVSDLLD 555
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225441211|ref|XP_002266581.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/460 (72%), Positives = 398/460 (86%)
Query: 1 MDAPDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIE 60
M A D IHS L K+ +EG D+SRAEIA M NLR RM+ KALQ SEW+E +KKLD +E
Sbjct: 128 MAASDQPIHSVLNKWDQEGKDMSRAEIAQTMLNLRKIRMFLKALQFSEWMEEHKKLDMVE 187
Query: 61 RDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMK 120
RDYAS +DLIAK+RGLQKAE YI+KIP+SFRGE+VYRTLLANCV+ N KKAEEVFN+MK
Sbjct: 188 RDYASRVDLIAKVRGLQKAEHYIEKIPKSFRGELVYRTLLANCVSTTNAKKAEEVFNKMK 247
Query: 121 DKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTG 180
D GFP+T+FACNQLL+LYKR+DKKK+ADVLLLMEKE+VK + F+Y +LID KGQSND+TG
Sbjct: 248 DLGFPITTFACNQLLLLYKRVDKKKIADVLLLMEKEDVKPSLFTYGLLIDTKGQSNDITG 307
Query: 181 MDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLP 240
M+Q+VE MK+EGIEP+ Q+IL +HYV GG KEKAEA+LKEMEG NLKE+RW CR+LLP
Sbjct: 308 MEQIVETMKAEGIEPNLQVQSILVRHYVFGGLKEKAEAILKEMEGGNLKENRWVCRVLLP 367
Query: 241 LYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTK 300
YA LGKAD V RIWK+CESNP L +AAIEA+GKL KVEEAEA+F +MSKT+K+LS+K
Sbjct: 368 PYAALGKADDVERIWKVCESNPRLPEFVAAIEAYGKLKKVEEAEAIFNKMSKTFKRLSSK 427
Query: 301 HYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKA 360
HY+ALLKVYADHKML KGKDLVKQM++SGC IGPL WDALVKL+VE GEVEKAD IL KA
Sbjct: 428 HYSALLKVYADHKMLIKGKDLVKQMSDSGCRIGPLTWDALVKLYVEAGEVEKADKILQKA 487
Query: 361 QQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT 420
QQ+ KPMFS+YM IMDQYAKRGDIH++EK+FH+MRQ GYV+R +QFQ L+QAY+NAK
Sbjct: 488 MQQSPIKPMFSTYMAIMDQYAKRGDIHNSEKMFHQMRQSGYVSRLRQFQCLIQAYVNAKA 547
Query: 421 PAYGIRDRMRADNVFPNKALAAQVAQVDAFRKTAVSELLD 460
PAYGI++RM+ADN+FPN+ +A Q+AQVDAFRK+AVS+LLD
Sbjct: 548 PAYGIKERMKADNIFPNRVVAGQLAQVDAFRKSAVSDLLD 587
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297739953|emb|CBI30135.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/460 (72%), Positives = 398/460 (86%)
Query: 1 MDAPDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIE 60
M A D IHS L K+ +EG D+SRAEIA M NLR RM+ KALQ SEW+E +KKLD +E
Sbjct: 165 MAASDQPIHSVLNKWDQEGKDMSRAEIAQTMLNLRKIRMFLKALQFSEWMEEHKKLDMVE 224
Query: 61 RDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMK 120
RDYAS +DLIAK+RGLQKAE YI+KIP+SFRGE+VYRTLLANCV+ N KKAEEVFN+MK
Sbjct: 225 RDYASRVDLIAKVRGLQKAEHYIEKIPKSFRGELVYRTLLANCVSTTNAKKAEEVFNKMK 284
Query: 121 DKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTG 180
D GFP+T+FACNQLL+LYKR+DKKK+ADVLLLMEKE+VK + F+Y +LID KGQSND+TG
Sbjct: 285 DLGFPITTFACNQLLLLYKRVDKKKIADVLLLMEKEDVKPSLFTYGLLIDTKGQSNDITG 344
Query: 181 MDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLP 240
M+Q+VE MK+EGIEP+ Q+IL +HYV GG KEKAEA+LKEMEG NLKE+RW CR+LLP
Sbjct: 345 MEQIVETMKAEGIEPNLQVQSILVRHYVFGGLKEKAEAILKEMEGGNLKENRWVCRVLLP 404
Query: 241 LYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTK 300
YA LGKAD V RIWK+CESNP L +AAIEA+GKL KVEEAEA+F +MSKT+K+LS+K
Sbjct: 405 PYAALGKADDVERIWKVCESNPRLPEFVAAIEAYGKLKKVEEAEAIFNKMSKTFKRLSSK 464
Query: 301 HYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKA 360
HY+ALLKVYADHKML KGKDLVKQM++SGC IGPL WDALVKL+VE GEVEKAD IL KA
Sbjct: 465 HYSALLKVYADHKMLIKGKDLVKQMSDSGCRIGPLTWDALVKLYVEAGEVEKADKILQKA 524
Query: 361 QQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT 420
QQ+ KPMFS+YM IMDQYAKRGDIH++EK+FH+MRQ GYV+R +QFQ L+QAY+NAK
Sbjct: 525 MQQSPIKPMFSTYMAIMDQYAKRGDIHNSEKMFHQMRQSGYVSRLRQFQCLIQAYVNAKA 584
Query: 421 PAYGIRDRMRADNVFPNKALAAQVAQVDAFRKTAVSELLD 460
PAYGI++RM+ADN+FPN+ +A Q+AQVDAFRK+AVS+LLD
Sbjct: 585 PAYGIKERMKADNIFPNRVVAGQLAQVDAFRKSAVSDLLD 624
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224137686|ref|XP_002322619.1| predicted protein [Populus trichocarpa] gi|222867249|gb|EEF04380.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/460 (70%), Positives = 393/460 (85%)
Query: 1 MDAPDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIE 60
+ AP +S+HS L K+ EG DL + EI+ AM NLR RR++G+ALQLSEW+E NK+ DF E
Sbjct: 13 ISAPGVSVHSVLDKWVAEGRDLDQLEISNAMFNLRKRRLFGRALQLSEWVEANKRKDFDE 72
Query: 61 RDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMK 120
RDYAS LDLIAK+RGLQKAE YI+KIP+S +GEV+YRTLLANCV+ NN KKA EVFN+MK
Sbjct: 73 RDYASRLDLIAKVRGLQKAEVYIEKIPKSLKGEVIYRTLLANCVSANNAKKAVEVFNKMK 132
Query: 121 DKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTG 180
D P+T F+ NQLL+LYKR DKKK+ADVLL MEKENVK + F+Y +LID KGQSND+ G
Sbjct: 133 DLELPITLFSYNQLLLLYKRHDKKKIADVLLSMEKENVKPSLFTYILLIDTKGQSNDIAG 192
Query: 181 MDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLP 240
M+Q+ E MK+EGIEPD TQAI+A+HYVSGG KEKAE +LKEMEG NL+EHRW C+ +LP
Sbjct: 193 MEQIAETMKAEGIEPDIKTQAIMARHYVSGGLKEKAEIVLKEMEGGNLEEHRWACQFMLP 252
Query: 241 LYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTK 300
LY LGKAD+V+R+WK C+ +P LD CMAAIEAWG+L K+ EAEAVF+ MSKTWKKLS+K
Sbjct: 253 LYGTLGKADEVSRLWKFCKKSPRLDECMAAIEAWGQLKKIPEAEAVFELMSKTWKKLSSK 312
Query: 301 HYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKA 360
HY+ALLKVYA++KMLSKGKDL+KQM +SGC IGPL WDAL+KL+VE GEVEKADSIL KA
Sbjct: 313 HYSALLKVYANNKMLSKGKDLIKQMGDSGCRIGPLTWDALIKLYVEAGEVEKADSILNKA 372
Query: 361 QQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT 420
QQN+ KPMFSSYM+IM++YAK+GDIH+ EK+FHRMRQ GY AR KQFQTL+QAYINAK
Sbjct: 373 VQQNQMKPMFSSYMIIMEKYAKKGDIHNAEKMFHRMRQAGYQARSKQFQTLIQAYINAKA 432
Query: 421 PAYGIRDRMRADNVFPNKALAAQVAQVDAFRKTAVSELLD 460
P YG+R+R++AD +F NKA+AAQ++QVDAF++T VS+LLD
Sbjct: 433 PCYGMRERLKADGLFANKAMAAQLSQVDAFKRTVVSDLLD 472
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357509403|ref|XP_003624990.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355500005|gb|AES81208.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 296/460 (64%), Positives = 385/460 (83%), Gaps = 1/460 (0%)
Query: 1 MDAPDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIE 60
M+ +I++ L K+ E+G +LSR EI+L M NLR R++Y KALQLSEWLE+ K L+F+E
Sbjct: 165 MNGTGPTIYTALEKWVEDGKELSREEISLTMINLRRRKIYLKALQLSEWLESKKHLEFVE 224
Query: 61 RDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMK 120
RDYAS LDLIAKL GL KAE YI+KIPESFRGE++YRTLLANCV NN+KKAEE+FN+MK
Sbjct: 225 RDYASQLDLIAKLHGLHKAEVYIEKIPESFRGEIIYRTLLANCVTQNNLKKAEEIFNKMK 284
Query: 121 DKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTG 180
D FP+T FACNQLL+LYKR DKKK+ADVLLLME+ENVK + ++KILID+KGQSND+ G
Sbjct: 285 DLEFPLTPFACNQLLLLYKRTDKKKIADVLLLMEQENVKPSPLTFKILIDVKGQSNDIDG 344
Query: 181 MDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLP 240
MDQ+V+ M++EGIEPD+ T+A+L HY+SGG +KA+ +LKEMEG+NLKE+RW CRLLL
Sbjct: 345 MDQIVDQMRAEGIEPDNYTKAVLVGHYISGGHDDKAKMLLKEMEGENLKENRWVCRLLLA 404
Query: 241 LYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTK 300
LYA+LG AD+V R+WK+CE+ P ++ C+AAIEAWGKL K++EAEAVF+ M++ W KL++K
Sbjct: 405 LYAKLGMADEVGRVWKVCETRPSVEDCVAAIEAWGKLKKIDEAEAVFEVMARKW-KLTSK 463
Query: 301 HYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKA 360
+ + LL VYA++KML+KGKDL+K+MA GC IGPL W+ALVKL+V+ GEVEKADS+L KA
Sbjct: 464 NCSVLLNVYANNKMLTKGKDLIKRMAHKGCRIGPLTWNALVKLYVQAGEVEKADSVLQKA 523
Query: 361 QQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT 420
QQ+ +P+FSSY ++++Y+KRGDIH++EKIF+RM+Q GY++R KQ+Q L++AY A
Sbjct: 524 IQQSPVRPIFSSYNTLLEEYSKRGDIHNSEKIFYRMKQAGYISRLKQYQILIEAYRRANV 583
Query: 421 PAYGIRDRMRADNVFPNKALAAQVAQVDAFRKTAVSELLD 460
PAYGIRDR++ADNVFPNK LA + QVD F+KT S+LLD
Sbjct: 584 PAYGIRDRLKADNVFPNKTLANLLVQVDGFKKTQASDLLD 623
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356498381|ref|XP_003518031.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 307/459 (66%), Positives = 385/459 (83%), Gaps = 1/459 (0%)
Query: 2 DAPDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIER 61
+AP +S+ S L K+ E G +LSR EI LA+ LR R+MYG+A QL +WLE+NKKL+F+E
Sbjct: 152 NAPGLSVDSALNKWVEHGKELSRKEILLAVRELRRRKMYGRAFQLFQWLESNKKLEFMES 211
Query: 62 DYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKD 121
DYAS LDLIAKLRGL KAE YI+ +PESFRGE++YRTLLANC + NN+ E++FN+MKD
Sbjct: 212 DYASQLDLIAKLRGLPKAEKYIESVPESFRGELLYRTLLANCASQNNLIATEKIFNKMKD 271
Query: 122 KGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGM 181
P+T+FACNQLL+LYK+LDKKK+ADVLLLMEKENVK + F+Y+ILID KGQSND+ GM
Sbjct: 272 LDLPLTAFACNQLLLLYKKLDKKKIADVLLLMEKENVKPSLFTYRILIDSKGQSNDIAGM 331
Query: 182 DQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPL 241
+QV E MK EG EPD QA+LA+HY S G KEKAEAMLKEMEG+NLKE++W C LL L
Sbjct: 332 EQVFETMKEEGFEPDIQIQALLARHYTSSGLKEKAEAMLKEMEGENLKENQWVCATLLRL 391
Query: 242 YAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKH 301
YA LGKAD+V RIWK+CES P ++ C+AA+EAWGKLNK+EEAEAVF+ +SK W KL++K+
Sbjct: 392 YANLGKADEVERIWKVCESKPRVEDCLAAVEAWGKLNKIEEAEAVFEMVSKKW-KLNSKN 450
Query: 302 YTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQ 361
Y+ LLK+YA++KML+KGK+LVK MA+SG IGPL WDALVKL+++ GEVEKADSIL KA
Sbjct: 451 YSVLLKIYANNKMLTKGKELVKLMADSGVRIGPLTWDALVKLYIQAGEVEKADSILHKAI 510
Query: 362 QQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTP 421
QQN+ +PMF++Y+ I++QYAKRGD+H++EKIF +MRQ GY +R QFQ L+QAY+NAK P
Sbjct: 511 QQNQLQPMFTTYLAILEQYAKRGDVHNSEKIFLKMRQAGYTSRISQFQVLIQAYVNAKVP 570
Query: 422 AYGIRDRMRADNVFPNKALAAQVAQVDAFRKTAVSELLD 460
AYGIR+R++ADN+FPNK LA Q+A VDAFRK AVS+LLD
Sbjct: 571 AYGIRERIKADNLFPNKTLANQLALVDAFRKNAVSDLLD 609
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842839|ref|XP_002889301.1| hypothetical protein ARALYDRAFT_477224 [Arabidopsis lyrata subsp. lyrata] gi|297335142|gb|EFH65560.1| hypothetical protein ARALYDRAFT_477224 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 635 bits (1639), Expect = e-179, Method: Compositional matrix adjust.
Identities = 289/460 (62%), Positives = 378/460 (82%)
Query: 1 MDAPDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIE 60
+ AP +SI S L K+ EEGN+++R E+A AM LR RRMYG+ALQLSEWLE NKK++ E
Sbjct: 138 VSAPGLSIGSALDKWVEEGNEITRVEVAKAMLQLRRRRMYGRALQLSEWLEANKKIEMNE 197
Query: 61 RDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMK 120
RDY+S LDL K+RGL+ E+Y+QKIP+SF+GEV+YRTLLANCVA NVKK+E VFNRMK
Sbjct: 198 RDYSSRLDLTVKIRGLENGEAYMQKIPKSFKGEVIYRTLLANCVAAGNVKKSELVFNRMK 257
Query: 121 DKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTG 180
D GFP++ F C+Q+L+LYKR+D+KK+ADVLLLMEKENVK + +YKILID+KG +ND++G
Sbjct: 258 DLGFPLSGFTCDQMLLLYKRIDRKKIADVLLLMEKENVKPSLLTYKILIDVKGATNDISG 317
Query: 181 MDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLP 240
M+Q++E MK EG++PD TQA+ AKHY G KEKAE +LKEMEG++L+ +R + LL
Sbjct: 318 MEQILETMKDEGVQPDFQTQALTAKHYSGAGLKEKAEKVLKEMEGESLEANRRAFKDLLS 377
Query: 241 LYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTK 300
+YA LG+ D+V RIWK+CES P+ D +AAI A+GKLNKV+EAEA+F+++ ++ S+
Sbjct: 378 IYASLGREDEVTRIWKICESKPYFDESLAAIHAFGKLNKVQEAEAIFEKIVTMGRRASSN 437
Query: 301 HYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKA 360
Y+ LL+VY DHKMLSKGKDLVK+MAESGC I WDAL+KL+VE GEVEKADS+L KA
Sbjct: 438 TYSVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEKADSMLDKA 497
Query: 361 QQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT 420
+Q+ K M +S+M IMD+Y+KRGD+H+TEKIF +MR+VGY +R +QFQ L+QAYINAK
Sbjct: 498 SKQSHTKLMMNSFMYIMDEYSKRGDVHNTEKIFLKMREVGYTSRLRQFQALLQAYINAKA 557
Query: 421 PAYGIRDRMRADNVFPNKALAAQVAQVDAFRKTAVSELLD 460
PAYG+RDRM+ADN+FPNK++AAQ+AQ D F+KTA+S++LD
Sbjct: 558 PAYGMRDRMKADNIFPNKSMAAQLAQGDPFKKTAISDILD 597
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15220095|ref|NP_178143.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|42572199|ref|NP_974190.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|145327755|ref|NP_001077853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75262222|sp|Q9C977.1|PP135_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g80270, mitochondrial; Flags: Precursor gi|12324975|gb|AAG52431.1|AC018848_2 hypothetical protein; 8785-10851 [Arabidopsis thaliana] gi|17064898|gb|AAL32603.1| Unknown protein [Arabidopsis thaliana] gi|20259918|gb|AAM13306.1| unknown protein [Arabidopsis thaliana] gi|332198258|gb|AEE36379.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332198259|gb|AEE36380.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332198260|gb|AEE36381.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust.
Identities = 283/460 (61%), Positives = 379/460 (82%)
Query: 1 MDAPDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIE 60
+ AP +SI S L K+ EEGN+++R EIA AM LR RRMYG+ALQ+SEWLE NKK++ E
Sbjct: 137 VSAPGLSIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQMSEWLEANKKIEMTE 196
Query: 61 RDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMK 120
RDYAS LDL K+RGL+K E+ +QKIP+SF+GEV+YRTLLANCVA NVKK+E VFN+MK
Sbjct: 197 RDYASRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSELVFNKMK 256
Query: 121 DKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTG 180
D GFP++ F C+Q+L+L+KR+D+KK+ADVLLLMEKEN+K + +YKILID+KG +ND++G
Sbjct: 257 DLGFPLSGFTCDQMLLLHKRIDRKKIADVLLLMEKENIKPSLLTYKILIDVKGATNDISG 316
Query: 181 MDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLP 240
M+Q++E MK EG+E D TQA+ A+HY G K+KAE +LKEMEG++L+ +R + LL
Sbjct: 317 MEQILETMKDEGVELDFQTQALTARHYSGAGLKDKAEKVLKEMEGESLEANRRAFKDLLS 376
Query: 241 LYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTK 300
+YA LG+ D+V RIWK+CES P+ + +AAI+A+GKLNKV+EAEA+F+++ K ++ S+
Sbjct: 377 IYASLGREDEVKRIWKICESKPYFEESLAAIQAFGKLNKVQEAEAIFEKIVKMDRRASSS 436
Query: 301 HYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKA 360
Y+ LL+VY DHKMLSKGKDLVK+MAESGC I WDAL+KL+VE GEVEKADS+L KA
Sbjct: 437 TYSVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEKADSLLDKA 496
Query: 361 QQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT 420
+Q+ K M +S+M IMD+Y+KRGD+H+TEKIF +MR+ GY +R +QFQ L+QAYINAK+
Sbjct: 497 SKQSHTKLMMNSFMYIMDEYSKRGDVHNTEKIFLKMREAGYTSRLRQFQALMQAYINAKS 556
Query: 421 PAYGIRDRMRADNVFPNKALAAQVAQVDAFRKTAVSELLD 460
PAYG+RDR++ADN+FPNK++AAQ+AQ D F+KTA+S++LD
Sbjct: 557 PAYGMRDRLKADNIFPNKSMAAQLAQGDPFKKTAISDILD 596
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449506011|ref|XP_004162628.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 294/459 (64%), Positives = 371/459 (80%), Gaps = 1/459 (0%)
Query: 3 APDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERD 62
AP +++ S L K+ EG +LSR +I+ AM NLR RMYGKALQ SEWLE N KLDF+E+D
Sbjct: 155 APGLTVSSALDKWVSEGKELSRDDISSAMLNLRKCRMYGKALQFSEWLEANGKLDFVEKD 214
Query: 63 YASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDK 122
YAS LDLI KLRGL+ AE+YI KIP+SF+GEVVYRTLLANCV NV+KAEEVFN+MKD
Sbjct: 215 YASRLDLIGKLRGLRMAENYIAKIPKSFQGEVVYRTLLANCVIACNVQKAEEVFNKMKDL 274
Query: 123 GFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMD 182
FP+T+FACNQLL+LYKR DK+KVAD+LLLMEKENVK ++F+Y+ILID KG SND+TGM+
Sbjct: 275 EFPITAFACNQLLLLYKRTDKRKVADILLLMEKENVKPSRFTYRILIDTKGLSNDITGME 334
Query: 183 QVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLY 242
QVV+ MK+EGIE D ST ++LAKHY+SGG K+KA+A+LKEME N + RW CR+LLPLY
Sbjct: 335 QVVDTMKAEGIELDVSTLSVLAKHYISGGLKDKAKAILKEMEEINSEGSRWPCRILLPLY 394
Query: 243 AELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHY 302
EL D+V R+W++C SNP ++ CMAAI AWGKL ++EAE +F R+ KT +KLS +HY
Sbjct: 395 GELQMEDEVRRLWEICGSNPHIEECMAAIVAWGKLKNIQEAEKIFDRVVKTGEKLSARHY 454
Query: 303 TALLKVY-ADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQ 361
+ +L VY D KML+KGK++VKQMAESG + P+ DA+VKL+VE GEVEKADS L+K
Sbjct: 455 STMLNVYREDSKMLTKGKEVVKQMAESGSRMDPVTLDAVVKLYVEAGEVEKADSFLVKTV 514
Query: 362 QQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTP 421
Q K KPMF++Y+ +MD+YA RGD+ + EKIF MR+ GYV R QFQTL+QAY+NAK P
Sbjct: 515 LQYKKKPMFTTYITLMDRYASRGDVPNAEKIFGMMRKYGYVGRLSQFQTLIQAYVNAKAP 574
Query: 422 AYGIRDRMRADNVFPNKALAAQVAQVDAFRKTAVSELLD 460
AYG+R+RM+AD+VFPNKALA ++AQVD+ + VS+LLD
Sbjct: 575 AYGMRERMKADSVFPNKALAGKLAQVDSLKMREVSDLLD 613
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534606|ref|XP_003535844.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 297/460 (64%), Positives = 383/460 (83%), Gaps = 1/460 (0%)
Query: 1 MDAPDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIE 60
++AP +S+ S L+K+A +G +LSR EI LA+ LR R+MYG+A QL +WLE+NKKL+F+E
Sbjct: 142 LNAPGLSVDSALSKWAGQGKELSRKEIFLAVRELRRRKMYGRAFQLFQWLESNKKLEFME 201
Query: 61 RDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMK 120
DYAS LDLIAKLRGL +AE YI+ +PESFRGE++YRTLLANC + NN+ +E++FN+MK
Sbjct: 202 SDYASQLDLIAKLRGLPQAEKYIESVPESFRGELLYRTLLANCASQNNLIASEKIFNKMK 261
Query: 121 DKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTG 180
D P+T FACNQLL+LYK+LDKKK+ADVLLLMEKENVK + F+Y+ILID KG SND+ G
Sbjct: 262 DLDLPLTVFACNQLLLLYKKLDKKKIADVLLLMEKENVKPSLFTYRILIDSKGHSNDIAG 321
Query: 181 MDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLP 240
M+QV E MK EG EPD QA+LA+HY S G KEKAEA+LKE+EG+NL+E +W C LL
Sbjct: 322 MEQVFETMKEEGFEPDIQLQALLARHYTSAGLKEKAEAILKEIEGENLEEKQWVCATLLR 381
Query: 241 LYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTK 300
LYA LGKAD+V RIWK+CES P +D C+AA+EAWGKL K+EEAEAVF+ SK W KL++K
Sbjct: 382 LYANLGKADEVERIWKVCESKPRVDDCLAAVEAWGKLEKIEEAEAVFEMASKKW-KLNSK 440
Query: 301 HYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKA 360
+Y+ LLK+YA++KML+KGKDL+K+MA+SG IGPL W+ALVKL+++ GEVEKADS+L KA
Sbjct: 441 NYSILLKIYANNKMLAKGKDLIKRMADSGLRIGPLTWNALVKLYIQAGEVEKADSVLQKA 500
Query: 361 QQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT 420
QQ++ +PMF++Y+ I++QYAKRGD+H++EKIF +MRQ GY +R QF+ L+QAY+NAK
Sbjct: 501 IQQSQLQPMFTTYLDILEQYAKRGDVHNSEKIFLKMRQAGYTSRISQFKVLMQAYVNAKV 560
Query: 421 PAYGIRDRMRADNVFPNKALAAQVAQVDAFRKTAVSELLD 460
PAYGIR+RM+ADN+FPNK LA Q+ VDAFRK VS+LLD
Sbjct: 561 PAYGIRERMKADNLFPNKTLANQLFLVDAFRKNPVSDLLD 600
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 460 | ||||||
| TAIR|locus:2034215 | 596 | PPR596 "AT1G80270" [Arabidopsi | 1.0 | 0.771 | 0.571 | 1.7e-144 | |
| TAIR|locus:2037823 | 594 | AT1G15480 "AT1G15480" [Arabido | 0.989 | 0.765 | 0.545 | 4.7e-135 | |
| TAIR|locus:2092565 | 610 | AT3G15590 "AT3G15590" [Arabido | 0.986 | 0.744 | 0.508 | 2.4e-124 | |
| TAIR|locus:2036586 | 491 | AT1G60770 [Arabidopsis thalian | 0.941 | 0.881 | 0.239 | 8.3e-35 | |
| TAIR|locus:504955535 | 492 | AT4G21705 "AT4G21705" [Arabido | 0.891 | 0.833 | 0.247 | 2e-30 | |
| TAIR|locus:2140220 | 532 | AT4G02820 "AT4G02820" [Arabido | 0.973 | 0.842 | 0.229 | 3.2e-30 | |
| TAIR|locus:2024952 | 534 | AT1G07590 [Arabidopsis thalian | 0.965 | 0.831 | 0.210 | 1.6e-29 | |
| TAIR|locus:2204793 | 524 | AT1G02150 [Arabidopsis thalian | 0.863 | 0.757 | 0.235 | 3.9e-29 | |
| TAIR|locus:2146390 | 491 | AT5G27460 "AT5G27460" [Arabido | 0.939 | 0.879 | 0.244 | 1.6e-28 | |
| TAIR|locus:2051379 | 490 | AT2G20710 [Arabidopsis thalian | 0.867 | 0.814 | 0.25 | 1.4e-26 |
| TAIR|locus:2034215 PPR596 "AT1G80270" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1412 (502.1 bits), Expect = 1.7e-144, P = 1.7e-144
Identities = 263/460 (57%), Positives = 354/460 (76%)
Query: 1 MDAPDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIE 60
+ AP +SI S L K+ EEGN+++R EIA AM LR RRMYG+ALQ+SEWLE NKK++ E
Sbjct: 137 VSAPGLSIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQMSEWLEANKKIEMTE 196
Query: 61 RDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMK 120
RDYAS LDL K+RGL+K E+ +QKIP+SF+GEV+YRTLLANCVA NVKK+E VFN+MK
Sbjct: 197 RDYASRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSELVFNKMK 256
Query: 121 DKGFPVTSFACNQLLILYXXXXXXXXXXXXXXMEKENVKLTQFSYKILIDIKGQSNDLTG 180
D GFP++ F C+Q+L+L+ MEKEN+K + +YKILID+KG +ND++G
Sbjct: 257 DLGFPLSGFTCDQMLLLHKRIDRKKIADVLLLMEKENIKPSLLTYKILIDVKGATNDISG 316
Query: 181 MDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRXXXXXXXXXXXXGDNLKEHRWTCRLLLP 240
M+Q++E MK EG+E D TQA+ A+HY G G++L+ +R + LL
Sbjct: 317 MEQILETMKDEGVELDFQTQALTARHYSGAGLKDKAEKVLKEMEGESLEANRRAFKDLLS 376
Query: 241 LYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTK 300
+YA LG+ D+V RIWK+CES P+ + +AAI+A+GKLNKV+EAEA+F+++ K ++ S+
Sbjct: 377 IYASLGREDEVKRIWKICESKPYFEESLAAIQAFGKLNKVQEAEAIFEKIVKMDRRASSS 436
Query: 301 HYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKA 360
Y+ LL+VY DHKMLSKGKDLVK+MAESGC I WDAL+KL+VE GEVEKADS+L KA
Sbjct: 437 TYSVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEKADSLLDKA 496
Query: 361 QQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT 420
+Q+ K M +S+M IMD+Y+KRGD+H+TEKIF +MR+ GY +R +QFQ L+QAYINAK+
Sbjct: 497 SKQSHTKLMMNSFMYIMDEYSKRGDVHNTEKIFLKMREAGYTSRLRQFQALMQAYINAKS 556
Query: 421 PAYGIRDRMRADNVFPNKALAAQVAQVDAFRKTAVSELLD 460
PAYG+RDR++ADN+FPNK++AAQ+AQ D F+KTA+S++LD
Sbjct: 557 PAYGMRDRLKADNIFPNKSMAAQLAQGDPFKKTAISDILD 596
|
|
| TAIR|locus:2037823 AT1G15480 "AT1G15480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1323 (470.8 bits), Expect = 4.7e-135, P = 4.7e-135
Identities = 248/455 (54%), Positives = 340/455 (74%)
Query: 6 ISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYAS 65
+S+ S L K+ E+G D +R E AM LR RRM+G+ALQ++EWL+ NK+ + ERDYA
Sbjct: 140 LSVGSALDKWVEQGKDTNRKEFESAMLQLRKRRMFGRALQMTEWLDENKQFEMEERDYAC 199
Query: 66 CLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFP 125
LDLI+K+RG K E+YI+ IPESFRGE+VYRTLLAN VA +NV+ AE VFN+MKD GFP
Sbjct: 200 RLDLISKVRGWYKGEAYIKTIPESFRGELVYRTLLANHVATSNVRTAEAVFNKMKDLGFP 259
Query: 126 VTSFACNQLLILYXXXXXXXXXXXXXXMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVV 185
+++F CNQ+LILY +EKEN+K +YKILID KG SND+TGM+Q+V
Sbjct: 260 LSTFTCNQMLILYKRVDKKKIADVLLLLEKENLKPNLNTYKILIDTKGSSNDITGMEQIV 319
Query: 186 EAMKSEGIEPDSSTQAILAKHYVSGGRXXXXXXXXXXXXGDNLKEHRWTCRLLLPLYAEL 245
E MKSEG+E D +A++A+HY S G G++L+E+R C+ LL +Y L
Sbjct: 320 ETMKSEGVELDLRARALIARHYASAGLKEKAEKVLKEMEGESLEENRHMCKDLLSVYGYL 379
Query: 246 GKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTAL 305
+ D+V R+WK+CE NP + +AAI A+GK++KV++AEAVF+++ K ++S+ Y+ L
Sbjct: 380 QREDEVRRVWKICEENPRYNEVLAAILAFGKIDKVKDAEAVFEKVLKMSHRVSSNVYSVL 439
Query: 306 LKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNK 365
L+VY DHKM+S+GKDLVKQM++SGC+IG L WDA++KL+VE GEVEKA+S L KA Q +
Sbjct: 440 LRVYVDHKMVSEGKDLVKQMSDSGCNIGALTWDAVIKLYVEAGEVEKAESSLSKAIQSKQ 499
Query: 366 FKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGI 425
KP+ SS+M +M +Y +RGD+H+TEKIF RM+Q GY +RF +QTL+QAY+NAK PAYG+
Sbjct: 500 IKPLMSSFMYLMHEYVRRGDVHNTEKIFQRMKQAGYQSRFWAYQTLIQAYVNAKAPAYGM 559
Query: 426 RDRMRADNVFPNKALAAQVAQVDAFRKTAVSELLD 460
++RM+ADN+FPNK LAAQ+A+ D F+KT +S+LLD
Sbjct: 560 KERMKADNIFPNKRLAAQLAKADPFKKTPLSDLLD 594
|
|
| TAIR|locus:2092565 AT3G15590 "AT3G15590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1222 (435.2 bits), Expect = 2.4e-124, P = 2.4e-124
Identities = 231/454 (50%), Positives = 325/454 (71%)
Query: 7 SIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASC 66
S+ L K+ +EG DLS+AE+ LA+ NLR R+ Y LQL EWL N + +F E +YAS
Sbjct: 156 SVKHVLEKWVKEGKDLSQAEVTLAIHNLRKRKSYAMCLQLWEWLGANTQFEFTEANYASQ 215
Query: 67 LDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPV 126
LDL+AK+ LQKAE +++ IPES RGEVVYRTLLANCV ++V KAE++FN+MK+ FP
Sbjct: 216 LDLVAKVHSLQKAEIFLKDIPESSRGEVVYRTLLANCVLKHHVNKAEDIFNKMKELKFPT 275
Query: 127 TSFACNQLLILYXXXXXXXXXXXXXXMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVE 186
+ FACNQLL+LY ME+EN+K ++ +Y LI+ KG + D+TGM+++VE
Sbjct: 276 SVFACNQLLLLYSMHDRKKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGMEKIVE 335
Query: 187 AMKSEGIEPDSSTQAILAKHYVSGGRXXXXXXXXXXXXGDNLKEHRWTCRLLLPLYAELG 246
+K EGIE D Q+ILAK+Y+ G G L++ W CR LLPLYA++G
Sbjct: 336 TIKEEGIELDPELQSILAKYYIRAGLKERAQDLMKEIEGKGLQQTPWVCRSLLPLYADIG 395
Query: 247 KADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALL 306
+D V R+ + + NP D C++AI+AWGKL +VEEAEAVF+R+ + +K Y AL+
Sbjct: 396 DSDNVRRLSRFVDQNPRYDNCISAIKAWGKLKEVEEAEAVFERLVEKYKIFPMMPYFALM 455
Query: 307 KVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKF 366
++Y ++KML+KG+DLVK+M +G IGP W ALVKL+++ GEV KA+ IL +A + NK
Sbjct: 456 EIYTENKMLAKGRDLVKRMGNAGIAIGPSTWHALVKLYIKAGEVGKAELILNRATKDNKM 515
Query: 367 KPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGIR 426
+PMF++YM I+++YAKRGD+H+TEK+F +M++ Y A+ Q++T++ AYINAKTPAYG+
Sbjct: 516 RPMFTTYMAILEEYAKRGDVHNTEKVFMKMKRASYAAQLMQYETVLLAYINAKTPAYGMI 575
Query: 427 DRMRADNVFPNKALAAQVAQVDAFRKTAVSELLD 460
+RM+ADNVFPNK+LAA++AQV+ F+K VS LLD
Sbjct: 576 ERMKADNVFPNKSLAAKLAQVNPFKKCPVSVLLD 609
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| TAIR|locus:2036586 AT1G60770 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 107/446 (23%), Positives = 203/446 (45%)
Query: 5 DISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYA 64
++ + L ++ + + + E+ + LR R +Y AL+LSE +E + ++ D A
Sbjct: 36 EVKVRQQLNQFLKGTKHVFKWEVGDTIKKLRNRGLYYPALKLSEVME-ERGMNKTVSDQA 94
Query: 65 SCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNV-KKAEEVFNRMKDKG 123
LDL+AK R + E+Y +PE+ + E+ Y +LL NC + +KAE + N+MK+
Sbjct: 95 IHLDLVAKAREITAGENYFVDLPETSKTELTYGSLL-NCYCKELLTEKAEGLLNKMKELN 153
Query: 124 FPVTSFACNQLLILYXXXXXXXXX-XXXXXMEKENVKLTQFSYKILIDIKGQSNDLTGMD 182
+S + N L+ LY ++ ENV ++Y + + +ND++G++
Sbjct: 154 ITPSSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVE 213
Query: 183 QVVEAMKSEG-IEPDSSTQAILAKHYVSGGRXXXXXXXXXXXXGDNLKEHRWTCRLLLPL 241
+V+E M +G + PD +T + +A YV G N + + L+ L
Sbjct: 214 RVIEEMNRDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAYQFLITL 273
Query: 242 YAELGKADQVARIWK-LCESNPWLD--VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLS 298
Y LGK +V RIW+ L + P + I+ KLN + AE +FK
Sbjct: 274 YGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYD 333
Query: 299 TKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILL 358
+ L+ YA ++ K +L ++ G + W+ + +V+ G++ +A +
Sbjct: 334 IRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMDYYVKSGDMARALECMS 393
Query: 359 KAQQ-----QNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQ 413
KA K+ P + +M + ++ D++ E + ++ + F+ L++
Sbjct: 394 KAVSIGKGDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEILKNGTDNIGAEIFEPLIR 453
Query: 414 AYINAKTPAYGIRDRMRADNVFPNKA 439
Y A +R R++ +NV N+A
Sbjct: 454 TYAAAGKSHPAMRRRLKMENVEVNEA 479
|
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| TAIR|locus:504955535 AT4G21705 "AT4G21705" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 336 (123.3 bits), Expect = 2.0e-30, P = 2.0e-30
Identities = 105/424 (24%), Positives = 186/424 (43%)
Query: 4 PDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDY 63
P S++ L + + G +S AE+ + +LR R+ + AL++S+W+ F ++
Sbjct: 37 PKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALEVSKWMNETGVCVFSPTEH 96
Query: 64 ASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANC-VAGNNVKKAEEVFNRMKDK 122
A LDLI ++ G AE Y + + E ++ + Y LL NC V NV+K+ F +MK+
Sbjct: 97 AVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALL-NCYVRQQNVEKSLLHFEKMKEM 155
Query: 123 GFPVTSFACNQLLILYXXXXXXXXX-XXXXXMEKENVKLTQFSYKILIDIKGQSNDLTGM 181
GF +S N ++ LY M++ENV +SY+I I+ G DL +
Sbjct: 156 GFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDLERI 215
Query: 182 DQVVEAM-KSEGIEPDSSTQAILAKHYVSGGRXXXXXXXXXXXXGDNLKEHRWTCRLLLP 240
+ M + + I D +T A+ AK Y+ GG K+ L+
Sbjct: 216 GGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMSENRLEKKDGEGYNHLIT 275
Query: 241 LYAELGKADQVARIWKL----CESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKK 296
LYA LGK +V R+W L C+ D + +++ K++ + EAE V +
Sbjct: 276 LYARLGKKIEVLRLWDLEKDVCKRRINQDY-LTVLQSLVKIDALVEAEEVLTEWKSSGNC 334
Query: 297 LSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSI 356
+ +++ Y M K + +++ +A G P +W+ + + E G +E A
Sbjct: 335 YDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPESWELVATAYAEKGTLENAFKC 394
Query: 357 LLKAQQ----QNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLV 412
+ A K++P + ++ G + E +R V + + + LV
Sbjct: 395 MKTALGVEVGSRKWRPGLTLVTSVLSWVGDEGSLKEVESFVASLRNCIGVNK-QMYHALV 453
Query: 413 QAYI 416
+A I
Sbjct: 454 KADI 457
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| TAIR|locus:2140220 AT4G02820 "AT4G02820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 337 (123.7 bits), Expect = 3.2e-30, P = 3.2e-30
Identities = 104/453 (22%), Positives = 190/453 (41%)
Query: 11 TLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLI 70
T+ K+ EEG+ + + E+ + LR + Y AL++ EW+ + + DYA LDLI
Sbjct: 80 TIRKWKEEGHSVRKYELNRIVRELRKIKRYKHALEICEWMVVQEDIKLQAGDYAVHLDLI 139
Query: 71 AKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFA 130
+K+RGL AE + + +P+ RG +LL + V KAE +F +M + GF +
Sbjct: 140 SKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLP 199
Query: 131 CNQLLILYXXXXXXXXXXXXXXMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKS 190
N +L +Y K +Y + + ND+ G ++V K
Sbjct: 200 YNHMLSMYISRGQFEKVPVLIKELKIRTSPDIVTYNLWLTAFASGNDVEGAEKVYLKAKE 259
Query: 191 EGIEPDSSTQAILAKHYVSGGRXXXXXXXXXXXXGDNLKEHRWTCRLLLPLYAELGKADQ 250
E + PD T ++L Y K++R L+ L+A LG D
Sbjct: 260 EKLNPDWVTYSVLTNLYAKTDNVEKARLALKEMEKLVSKKNRVAYASLISLHANLGDKDG 319
Query: 251 VARIWKLCESN--PWLDV-CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLK 307
V WK +S+ D ++ I A KL + E+A+ ++ + +L
Sbjct: 320 VNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARIPNLILA 379
Query: 308 VYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKA-QQQNKF 366
Y + + G+ +++ E G + W+ L +++ ++EK KA K+
Sbjct: 380 EYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKDMEKVLDCFGKAIDSVKKW 439
Query: 367 KPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGIR 426
+ ++G++ EK+ +++ GYV + + +L++ Y A A +
Sbjct: 440 TVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYV-NTQLYNSLLRTYAKAGEMALIVE 498
Query: 427 DRMRADNVFPNKALAAQVAQVDAFRKTAVSELL 459
+RM DNV ++ + R T +S +
Sbjct: 499 ERMAKDNVELDEETKELIRLTSQMRVTEISSTI 531
|
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| TAIR|locus:2024952 AT1G07590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 331 (121.6 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 96/457 (21%), Positives = 201/457 (43%)
Query: 6 ISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYAS 65
+++ S L + +G + ++ A+ LR +AL+L EW+ + E +Y+
Sbjct: 79 VTVGSALQSWMGDGFPVHGGDVYHAINRLRKLGRNKRALELMEWIIRERPYRLGELEYSY 138
Query: 66 CLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFP 125
L+ KL G+ + E ++P+ F+ E++Y L+ C+ ++ A E +M++ G+
Sbjct: 139 LLEFTVKLHGVSQGEKLFTRVPQEFQNELLYNNLVIACLDQGVIRLALEYMKKMRELGYR 198
Query: 126 VTSFACNQLLILYXXXXXXXXXXXXXXMEKENVKLTQFS-YKILIDIKGQSNDLTGMDQV 184
+ N+L+I + K + S Y IL+ ++ +++ G+ +
Sbjct: 199 TSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHILMKLEANEHNIDGVLKA 258
Query: 185 VEAMKSEGIEPDSSTQAILAK-HYVSGGRXXXXXXXXXXXXGDNLKEHRW-TCRLLLPLY 242
+ MK G+EP+ + ILA H V+ R ++ W T +L+ LY
Sbjct: 259 FDGMKKAGVEPNEVSYCILAMAHAVA--RLYTVAEAYTEEIEKSITGDNWSTLDILMILY 316
Query: 243 AELGKADQVARIWKLCESNPWL--DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTK 300
LGK ++AR W + + + A EA+ ++ ++ AE ++ M T+
Sbjct: 317 GRLGKEKELARTWNVIRGFHHVRSKSYLLATEAFARVGNLDRAEELWLEMKNVKGLKETE 376
Query: 301 HYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALV----KLHVEGGEVEKADSI 356
+ +LL VY ++ K + ++M +G + + L K + ++ +
Sbjct: 377 QFNSLLSVYCKDGLIEKAIGVFREMTGNGFKPNSITYRHLALGCAKAKLMKEALKNIEMG 436
Query: 357 L-LKAQQQ-NKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQA 414
L LK + P + + I++ +A++GD+ ++EK+F ++ Y + L +A
Sbjct: 437 LNLKTSKSIGSSTPWLETTLSIIECFAEKGDVENSEKLFEEVKNAKYNRYAFVYNALFKA 496
Query: 415 YINAKTPAYGIRDRMRADNVFPNKALAAQVAQVDAFR 451
Y+ AK + RM P+ + + V+ ++
Sbjct: 497 YVKAKVYDPNLFKRMVLGGARPDAESYSLLKLVEQYK 533
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| TAIR|locus:2204793 AT1G02150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 327 (120.2 bits), Expect = 3.9e-29, P = 3.9e-29
Identities = 97/412 (23%), Positives = 181/412 (43%)
Query: 1 MDAPDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETN-KKLDFI 59
M+ P++ S L ++ + G L++ E+ + LR + +AL++ +W+ ++
Sbjct: 76 MEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNNRGERFRLS 135
Query: 60 ERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRM 119
D A LDLI K+RG+ AE + ++PE+F+ VY +LL V + +KAE + N M
Sbjct: 136 ASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTM 195
Query: 120 KDKGFPVTSFACNQLLILYXXXXXXXXXXXXXX-MEKENVKLTQFSYKILIDIKGQSNDL 178
+DKG+ + N ++ LY M++++++L +SY I + G +
Sbjct: 196 RDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSV 255
Query: 179 TGMDQVVEAMKSE-GIEPDSSTQAILAKHYVSGGRXXXXXXXXXXXXGDNLKEHRWTCRL 237
M+ V + MKS+ I P+ +T + +A Y+ G +R
Sbjct: 256 EKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITGRNRIPYHY 315
Query: 238 LLPLYAELGKADQVARIWKLCESN-PWLDVC--MAAIEAWGKLNKVEEAEAVFKRMSKTW 294
LL LY LG ++ R+W + +S P + A + + ++ +E AE V++
Sbjct: 316 LLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEEWLPVK 375
Query: 295 KKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKAD 354
+ L+ Y + L + L M E G W+ L H + +A
Sbjct: 376 SSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTRKRCISEAL 435
Query: 355 SIL---LKAQQQNKFKP---MFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400
+ L A+ + ++P M S + + ++ D+ S E + +RQ G
Sbjct: 436 TCLRNAFSAEGSSNWRPKVLMLSGFFKLCEE---ESDVTSKEAVLELLRQSG 484
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| TAIR|locus:2146390 AT5G27460 "AT5G27460" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 320 (117.7 bits), Expect = 1.6e-28, P = 1.6e-28
Identities = 109/445 (24%), Positives = 192/445 (43%)
Query: 2 DAPDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIER 61
+ P S+ S L + + G+ +S +E+ L L Y ALQ+ EW+E K ++F
Sbjct: 48 NGPRRSVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLALQMMEWMENQKDIEFSVY 107
Query: 62 DYASCLDLIAKLRGLQKAESYIQKIPES---FR-GEVVYRTLLANCVAGNNVKKAEEVFN 117
D A LDLI K GL++ E Y +K+ S R + Y LL V VK+AE +
Sbjct: 108 DIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYVKNKMVKEAEALME 167
Query: 118 RMKDKGFPVTSFACNQLLILYXXXXXXXXXXXXXXMEKEN-VKLTQFSYKILIDIKGQSN 176
++ GF VT N+++ LY M K N + SY + ++ + +
Sbjct: 168 KLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWMNACCEVS 227
Query: 177 DLTGMDQVVEAMKSE-GIEPDSSTQAILAKHYVSGGRXXXXXXXXXXXXGDNLKEHRWTC 235
+ ++ V + M + +E S+ LA Y+ G + +R
Sbjct: 228 GVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLEDAEKMLNRSNRLGY 287
Query: 236 RLLLPLYAELGKADQVARIWKLCESNPWLDVCM---AAIEAWGKLNKVEEAEAVFKRMSK 292
L+ LYA LG + V R+W++ +S C+ + + K +EEAE VF
Sbjct: 288 FFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAERVFSEWEA 347
Query: 293 TWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEK 352
+ LL Y + + K + L + E G W+ L++ V+ +EK
Sbjct: 348 QCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWEILMEGWVKCENMEK 407
Query: 353 A-DSI--LLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQ 409
A D++ + ++ ++P + M I + + K I + ++G +A ++
Sbjct: 408 AIDAMHQVFVLMRRCHWRPSHNIVMAIAEYFEKEEKIEEATAYVRDLHRLG-LASLPLYR 466
Query: 410 TLVQAYINAKTPAYGIRDRMRADNV 434
L++ + +AK PAY I + M+ D +
Sbjct: 467 LLLRMHEHAKRPAYDIYEMMKLDKL 491
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| TAIR|locus:2051379 AT2G20710 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 312 (114.9 bits), Expect = 1.4e-26, P = 1.4e-26
Identities = 102/408 (25%), Positives = 178/408 (43%)
Query: 4 PDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDY 63
P SI L + ++GN + +E+ + LR + ALQ+S+W+ ++ + E D
Sbjct: 50 PSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISDWMSEHRVHEISEGDV 109
Query: 64 ASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNV-KKAEEVFNRMKDK 122
A LDLIAK+ GL +AE + + IP R +Y LL NC A V KAE+VF MK+
Sbjct: 110 AIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALL-NCYASKKVLHKAEQVFQEMKEL 168
Query: 123 GFPVTSFACNQLLILYXXXXXXXXXXXXXX-MEKENVKLTQFSYKILIDIKGQSNDLTGM 181
GF N +L LY ME E VK F+ + +D+ GM
Sbjct: 169 GFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVVSDVEGM 228
Query: 182 DQ-VVEAMKSEGIEPDSSTQAILAKHYVSGGRXXXXXXXXXXXXGD-NLKEHRWTCRLLL 239
++ ++ +G+ D T A A Y+ G N ++ + +L+
Sbjct: 229 EKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNAQKRKHAYEVLM 288
Query: 240 PLYAELGKADQVARIWKLC-ESNPWLDV-CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKL 297
Y GK ++V R+W L E + + + ++ I A K++ +EE E + +
Sbjct: 289 SFYGAAGKKEEVYRLWSLYKELDGFYNTGYISVISALLKMDDIEEVEKIMEEWEAGHSLF 348
Query: 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSIL 357
+ L+ Y M+ K +++V + + W+ L + G++EKA
Sbjct: 349 DIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYKMAGKMEKAVEKW 408
Query: 358 LKAQQQNK--FKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVA 403
+A + +K ++P M +D + D+ KI + + G+++
Sbjct: 409 KRAIEVSKPGWRPHQVVLMSCVDYLEGQRDMEGLRKILRLLSERGHIS 456
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9C977 | PP135_ARATH | No assigned EC number | 0.6152 | 1.0 | 0.7718 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.VI.1543.1 | hypothetical protein (555 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 460 | |||
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTS 128
V Y TL+ V++A E+F MK++G
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
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This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLL 135
V Y TL+ V++A ++FN MK +G + + L+
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 460 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.83 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.82 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.8 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.78 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.77 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.76 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.73 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.72 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.68 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.67 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.66 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.64 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.64 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.63 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.62 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.62 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.62 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.62 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.62 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.62 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.62 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.61 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.6 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.59 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.59 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.58 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.57 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.53 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.52 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.49 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.48 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.46 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.45 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.45 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.44 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.42 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.42 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.42 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.42 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.41 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.4 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.39 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.35 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.34 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.33 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.32 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.3 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.29 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.28 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.28 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.27 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.27 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.26 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.25 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.24 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.23 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.21 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.17 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.15 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.14 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.11 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.1 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.08 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.07 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.06 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.06 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.04 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.04 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.98 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.93 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.87 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.84 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.83 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.82 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.81 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.8 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.77 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.75 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.75 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.75 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.74 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.74 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.73 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.73 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.72 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.71 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.69 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.68 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.68 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.67 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.67 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.67 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.66 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.63 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.6 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.55 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.54 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.53 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.52 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.5 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.5 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.48 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.48 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.48 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.45 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.43 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.43 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.42 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.39 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.38 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.33 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.33 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.31 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.28 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.26 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.23 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.22 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.2 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.18 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.18 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.16 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.1 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.08 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.07 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.06 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.03 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.03 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.01 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.99 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.96 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.93 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.92 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.9 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.85 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.84 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.82 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.79 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.78 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.74 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.73 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.73 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.69 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.69 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.69 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.67 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.67 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.66 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.66 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.64 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.59 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.55 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.54 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.5 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.48 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.47 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.46 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.45 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.43 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.41 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.41 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.37 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.34 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.33 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.31 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.31 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.3 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.3 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.29 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.28 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.23 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.22 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.19 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.19 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.11 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.09 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.08 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.06 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.03 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.02 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.0 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.99 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.98 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.93 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.9 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.84 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.83 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.81 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.79 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.68 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.66 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.63 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.59 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.59 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.55 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.52 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.52 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.5 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.49 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.47 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.46 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.44 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.41 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.36 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.28 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.26 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.25 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.13 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.12 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.02 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.93 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.85 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.75 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.7 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.59 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.57 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.57 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.54 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.44 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.42 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.42 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.41 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.37 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.36 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.18 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.11 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.07 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.03 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.99 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.88 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.79 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.75 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.72 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.67 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.66 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.56 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.45 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.44 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.37 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.18 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.03 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.88 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.81 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.74 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.66 | |
| PRK09687 | 280 | putative lyase; Provisional | 93.44 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.36 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.33 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.29 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.13 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 92.95 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.93 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.77 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.74 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.72 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.7 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.61 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.54 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.24 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.13 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.87 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.62 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.39 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.35 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.2 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.16 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 91.1 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.03 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.83 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 90.68 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.67 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.3 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.0 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.91 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.9 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 89.83 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.82 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 89.77 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 89.75 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.65 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 89.6 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 89.33 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 89.15 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.12 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 89.05 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.02 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.72 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 88.45 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 88.37 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 88.27 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.02 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.79 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.77 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.6 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 87.43 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 87.13 | |
| PF09477 | 116 | Type_III_YscG: Bacterial type II secretion system | 86.31 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 86.27 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.77 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.71 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 85.24 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 85.09 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 84.94 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 84.63 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 84.6 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.19 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 83.82 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 83.67 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 83.46 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 83.13 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 82.8 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 82.39 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 82.09 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 81.59 | |
| cd08819 | 88 | CARD_MDA5_2 Caspase activation and recruitment dom | 81.34 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 81.28 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 81.19 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 80.88 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.73 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 80.58 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 80.51 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-66 Score=512.39 Aligned_cols=423 Identities=16% Similarity=0.233 Sum_probs=408.2
Q ss_pred CCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHH
Q 012577 21 DLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLL 100 (460)
Q Consensus 21 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll 100 (460)
..+...+..++..+++.|++++|+++|++|...+..+++...++.++..|.+.|.+++|.++|+.|+. |+..+|+.++
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd~~Tyn~LL 444 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PTLSTFNMLM 444 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CCHHHHHHHH
Confidence 44677889999999999999999999999999986677888889999999999999999999999998 9999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChh
Q 012577 101 ANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLT 179 (460)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 179 (460)
.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+ ++|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012577 180 GMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEG--DNLKEHRWTCRLLLPLYAELGKADQVARIWKL 257 (460)
Q Consensus 180 ~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (460)
+|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 68899999999999999999999999999999
Q ss_pred hcc---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 012577 258 CES---NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGP 334 (460)
Q Consensus 258 ~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 334 (460)
|.. .|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 987 57889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 012577 335 LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQA 414 (460)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 414 (460)
.+|+++|.+|++.|++++|.++|++|.+ .++.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~-~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKS-IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999965 479999999999999999999999999999999999999999999999999
Q ss_pred HHhcCC--chhhhHHHHHhCCCCcCHHHHHHHHH
Q 012577 415 YINAKT--PAYGIRDRMRADNVFPNKALAAQVAQ 446 (460)
Q Consensus 415 ~~~~g~--~~~~~~~~m~~~~~~p~~~~~~~l~~ 446 (460)
|++.|+ .+..++..|++.|+.||..+|+.|..
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIg 797 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG 797 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999 79999999999999999999999843
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-65 Score=504.98 Aligned_cols=437 Identities=17% Similarity=0.234 Sum_probs=392.8
Q ss_pred chHHHHHHHHHHhCC-CCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHH
Q 012577 6 ISIHSTLTKYAEEGN-DLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQ 84 (460)
Q Consensus 6 ~~~~~~l~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 84 (460)
.+...+++.|.+.|. +++...+..++..+.+.|..++|+++|+.|.. |+..+|+.++.+|++.|+++.|.++|+
T Consensus 387 ~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~ 461 (1060)
T PLN03218 387 KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLR 461 (1060)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 456678888888875 45666677788888899999999999988753 788999999999999999999999999
Q ss_pred hcccC--CCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCC
Q 012577 85 KIPES--FRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLT 161 (460)
Q Consensus 85 ~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~ 161 (460)
.|.+. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+ ++|.++|+.|.+.|+.||
T Consensus 462 ~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD 541 (1060)
T PLN03218 462 LVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 98765 678999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKS--EGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLL 239 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 239 (460)
..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI 621 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 99999999999999999999999999976 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHhcc---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHH
Q 012577 240 PLYAELGKADQVARIWKLCES---NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLS 316 (460)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 316 (460)
.+|++.|++++|.++|+.|.. .|+..+|++++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+++
T Consensus 622 ~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~e 701 (1060)
T PLN03218 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701 (1060)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999876 58889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012577 317 KGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRM 396 (460)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 396 (460)
+|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.+++++|
T Consensus 702 eA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~-~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M 780 (1060)
T PLN03218 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR-LGLCPNTITYSILLVASERKDDADVGLDLLSQA 780 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999864 478999999999999999999999999999999
Q ss_pred HHcCCCccHHHHHHHHHHHHh----c------------C---------CchhhhHHHHHhCCCCcCHHHHHHHHHHHHH
Q 012577 397 RQVGYVARFKQFQTLVQAYIN----A------------K---------TPAYGIRDRMRADNVFPNKALAAQVAQVDAF 450 (460)
Q Consensus 397 ~~~~~~~~~~~~~~l~~~~~~----~------------g---------~~~~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 450 (460)
.+.|+.||..+|++|+..|.+ + | ..|..+|++|.+.|+.||..||..+ +.++
T Consensus 781 ~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~v--L~cl 857 (1060)
T PLN03218 781 KEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQV--LGCL 857 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHh
Confidence 999999999999999866542 1 1 1367788999999999999999988 4555
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-62 Score=490.99 Aligned_cols=438 Identities=16% Similarity=0.175 Sum_probs=341.2
Q ss_pred chHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHh
Q 012577 6 ISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQK 85 (460)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 85 (460)
.....++++|...|..|+..++..+++.++..+++..+.+++..+.+.+ +.++..+++.++.+|+++|+++.|.++|+.
T Consensus 169 ~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~ 247 (857)
T PLN03077 169 DEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG-FELDVDVVNALITMYVKCGDVVSARLVFDR 247 (857)
T ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC-CCcccchHhHHHHHHhcCCCHHHHHHHHhc
Confidence 3455677788778888888888888888888888888888888888776 778889999999999999999999999999
Q ss_pred cccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHH
Q 012577 86 IPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFS 164 (460)
Q Consensus 86 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~ 164 (460)
|+. ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+ +.+.+++..|.+.|+.||..+
T Consensus 248 m~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~ 325 (857)
T PLN03077 248 MPR--RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325 (857)
T ss_pred CCC--CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHH
Confidence 997 89999999999999999999999999999999999999999999999999998 888999999999999999888
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE 244 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (460)
|++|+.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++
T Consensus 326 ~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~ 401 (857)
T PLN03077 326 CNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401 (857)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhc
Confidence 8888888888888888888887775 466777777777777777777777777777777777766666666666655
Q ss_pred cCChhHHHHHHHHhcc---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc----------------------------
Q 012577 245 LGKADQVARIWKLCES---NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT---------------------------- 293 (460)
Q Consensus 245 ~~~~~~a~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------------------- 293 (460)
.|+++.+.++++.+.. .|+..+|++++.+|++.|++++|.++|++|.+.
T Consensus 402 ~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5555555555554443 234445555555555555555555555544331
Q ss_pred --ccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHH
Q 012577 294 --WKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFS 371 (460)
Q Consensus 294 --~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 371 (460)
++.||..||+.++.+|++.|.++.+.+++..+.+.|+.+|..++++++.+|+++|++++|.++|+.+ .||..
T Consensus 482 ~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------~~d~~ 555 (857)
T PLN03077 482 LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------EKDVV 555 (857)
T ss_pred HhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------CCChh
Confidence 2455555555555555555555555555555555555555555566666777777777777776654 47888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHH-hCCCCcCHHHHHHHHHHH
Q 012577 372 SYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMR-ADNVFPNKALAAQVAQVD 448 (460)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~-~~~~~p~~~~~~~l~~~~ 448 (460)
+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|+ ++..+++.|+ ..|+.|+..+|..+ ++
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l--v~ 633 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV--VD 633 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH--HH
Confidence 9999999999999999999999999999999999999999999999998 7888899998 67999999999998 77
Q ss_pred HH-hhhhhhhh
Q 012577 449 AF-RKTAVSEL 458 (460)
Q Consensus 449 ~~-~~~~~~~~ 458 (460)
.+ +.|..+++
T Consensus 634 ~l~r~G~~~eA 644 (857)
T PLN03077 634 LLGRAGKLTEA 644 (857)
T ss_pred HHHhCCCHHHH
Confidence 77 66655544
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=475.68 Aligned_cols=432 Identities=15% Similarity=0.181 Sum_probs=399.3
Q ss_pred hHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHh
Q 012577 7 SIHSTLTKYAEEG-NDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQK 85 (460)
Q Consensus 7 ~~~~~l~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 85 (460)
....+++.|...+ ..++..++..++..+.+.++++.|.+++..+...+ +.|+..+|+.++.+|++.|+++.|.++|++
T Consensus 105 ~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~ 183 (697)
T PLN03081 105 EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLLMHVKCGMLIDARRLFDE 183 (697)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence 3445666665543 67899999999999999999999999999999887 888999999999999999999999999999
Q ss_pred cccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHH
Q 012577 86 IPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFS 164 (460)
Q Consensus 86 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~ 164 (460)
|+. ||..+||+++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|+..+. ..+.+++..+.+.|+.||..+
T Consensus 184 m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~ 261 (697)
T PLN03081 184 MPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFV 261 (697)
T ss_pred CCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcccee
Confidence 997 99999999999999999999999999999999999999999999999999999 889999999999999999999
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE 244 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (460)
|++||++|++.|++++|.++|++|. ++|..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~ 337 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR 337 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999997 679999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHhcc---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 012577 245 LGKADQVARIWKLCES---NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDL 321 (460)
Q Consensus 245 ~~~~~~a~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 321 (460)
.|++++|.+++..+.+ .|+..+|++++++|++.|++++|.++|++|.+ ||..+|+.||.+|++.|+.++|.++
T Consensus 338 ~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~l 413 (697)
T PLN03081 338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEM 413 (697)
T ss_pred ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999998876 57889999999999999999999999999975 6899999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 012577 322 VKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGY 401 (460)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 401 (460)
|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+..++.|+..+|+.++.+|++.|++++|.+++++| ++
T Consensus 414 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~ 490 (697)
T PLN03081 414 FERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PF 490 (697)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CC
Confidence 999999999999999999999999999999999999999888899999999999999999999999999998865 57
Q ss_pred CccHHHHHHHHHHHHhcCC--chhhhHHHHHhCCCCcC-HHHHHHHHHHHHH-hhhhhh
Q 012577 402 VARFKQFQTLVQAYINAKT--PAYGIRDRMRADNVFPN-KALAAQVAQVDAF-RKTAVS 456 (460)
Q Consensus 402 ~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~-~~~~~~l~~~~~~-~~~~~~ 456 (460)
.|+..+|++|+.+|...|+ .+..+++.+. ++.|+ ..+|..| ++.+ +.|..+
T Consensus 491 ~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L--~~~y~~~G~~~ 545 (697)
T PLN03081 491 KPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVL--LNLYNSSGRQA 545 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHHH--HHHHHhCCCHH
Confidence 8999999999999999998 4556666664 56675 5688888 4544 444433
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-60 Score=474.34 Aligned_cols=436 Identities=14% Similarity=0.115 Sum_probs=362.9
Q ss_pred chHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHh
Q 012577 6 ISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQK 85 (460)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 85 (460)
.....+++.+.+.|.+++..++..++..+.+.+.++.+.+++..+...+ ..++...++.++..|++.|+++.|.++|++
T Consensus 68 ~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~n~li~~~~~~g~~~~A~~~f~~ 146 (857)
T PLN03077 68 EQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSH-PSLGVRLGNAMLSMFVRFGELVHAWYVFGK 146 (857)
T ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHhCCChHHHHHHHhc
Confidence 3455677788888888999999999999988889999999999888776 567888899999999999999999999999
Q ss_pred cccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHH---------------------------
Q 012577 86 IPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILY--------------------------- 138 (460)
Q Consensus 86 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~--------------------------- 138 (460)
|+. ||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|
T Consensus 147 m~~--~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (857)
T PLN03077 147 MPE--RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV 224 (857)
T ss_pred CCC--CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccch
Confidence 987 899999999999999999999999999999989888887776655555
Q ss_pred --------HhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012577 139 --------KRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVS 209 (460)
Q Consensus 139 --------~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 209 (460)
++.|+ +.|..+|+.|. .||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 225 ~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~ 300 (857)
T PLN03077 225 VNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL 300 (857)
T ss_pred HhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Confidence 44455 55555555554 456667777777777777777777777788888888888888888888888
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 012577 210 GGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKR 289 (460)
Q Consensus 210 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 289 (460)
.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+.|. .|+..+|+++|.+|++.|++++|.++|++
T Consensus 301 ~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-TKDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred cCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 88888888888888888888888889999999999999999999999885 57888999999999999999999999999
Q ss_pred HHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC
Q 012577 290 MSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM 369 (460)
Q Consensus 290 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 369 (460)
|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+ +|
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d 454 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE-----KD 454 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----CC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888743 45
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------------------------------------------------
Q 012577 370 FSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGY------------------------------------------------ 401 (460)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~------------------------------------------------ 401 (460)
..+|+.++.+|++.|+.++|.++|++|.. ++
T Consensus 455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~ 533 (857)
T PLN03077 455 VISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533 (857)
T ss_pred eeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence 55666666666666666666666666653 23
Q ss_pred -----------------CccHHHHHHHHHHHHhcCC--chhhhHHHHHhCCCCcCHHHHHHHHHHHHH-hhhhhhh
Q 012577 402 -----------------VARFKQFQTLVQAYINAKT--PAYGIRDRMRADNVFPNKALAAQVAQVDAF-RKTAVSE 457 (460)
Q Consensus 402 -----------------~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~~ 457 (460)
.||..+||++|.+|++.|+ .+..++++|.+.|+.||..||..+ +.++ +.+.+++
T Consensus 534 y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l--l~a~~~~g~v~e 607 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL--LCACSRSGMVTQ 607 (857)
T ss_pred HHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH--HHHHhhcChHHH
Confidence 3455667888888888888 788999999999999999999999 6666 5555544
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-59 Score=457.07 Aligned_cols=413 Identities=12% Similarity=0.158 Sum_probs=392.4
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcc
Q 012577 8 IHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIP 87 (460)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 87 (460)
...++..+.+.|..++..+++.++..+++.|+++.|.++|+.|. .|+..+|+.++.+|++.|++++|.++|++|.
T Consensus 142 a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~ 216 (697)
T PLN03081 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMW 216 (697)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45677888888999999999999999999999999999999885 3688899999999999999999999999997
Q ss_pred cC--CCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHH
Q 012577 88 ES--FRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFS 164 (460)
Q Consensus 88 ~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~ 164 (460)
.. .|+..+|+.++.++++.|..+.+.+++..+.+.|+.||..+|+.|+.+|++.|+ ++|.++|+.|. .+|..+
T Consensus 217 ~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt 292 (697)
T PLN03081 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVA 292 (697)
T ss_pred HhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhH
Confidence 65 678999999999999999999999999999999999999999999999999999 99999999996 579999
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE 244 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (460)
||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+++|++
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012577 245 LGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQ 324 (460)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 324 (460)
.|++++|.++|+.|. .|+..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.
T Consensus 373 ~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~ 451 (697)
T PLN03081 373 WGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451 (697)
T ss_pred CCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 999999999999986 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-cCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 012577 325 MAE-SGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVA 403 (460)
Q Consensus 325 ~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 403 (460)
|.+ .|+.|+..+|+.++.+|++.|++++|.++++++ ++.|+..+|++++.+|...|+++.|..+++++.+.+ +.
T Consensus 452 m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~ 526 (697)
T PLN03081 452 MSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PE 526 (697)
T ss_pred HHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CC
Confidence 986 699999999999999999999999999998765 678999999999999999999999999999998654 44
Q ss_pred cHHHHHHHHHHHHhcCC--chhhhHHHHHhCCCC
Q 012577 404 RFKQFQTLVQAYINAKT--PAYGIRDRMRADNVF 435 (460)
Q Consensus 404 ~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~ 435 (460)
+..+|+.|+..|++.|+ .+..+++.|++.|+.
T Consensus 527 ~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 527 KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred CCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 67899999999999999 789999999999985
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-26 Score=234.05 Aligned_cols=408 Identities=11% Similarity=-0.028 Sum_probs=222.4
Q ss_pred CHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHH
Q 012577 23 SRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLA 101 (460)
Q Consensus 23 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~ 101 (460)
++..+..+...+...|++++|.+.|+.+.... +.+...+..++..+...|++++|.+.|+++....| +..++..+..
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 541 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAG 541 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 34444445555555555555555555544432 22333444455555555555555555555443322 3444555555
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhH
Q 012577 102 NCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTG 180 (460)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 180 (460)
.+.+.|++++|...|+++.+.+ +.+...+..+...+...|+ ++|..+++.+.+.. +.+...|..+..++...|++++
T Consensus 542 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 542 LYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555554442 2234444455555555555 55555555555432 3445555555555555666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc
Q 012577 181 MDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES 260 (460)
Q Consensus 181 a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (460)
|...|+.+.+.. +.+...+..+..++.+.|++++|...|+++.+... .+..++..+...+...|++++|..+++.+..
T Consensus 620 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 697 (899)
T TIGR02917 620 AVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666665555443 33444555555555555666666666655554432 2344555555555666666666666555544
Q ss_pred --CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 012577 261 --NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWD 338 (460)
Q Consensus 261 --~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 338 (460)
.++...+..+...+.+.|++++|.+.|+.+...+ |+..++..++..+.+.|++++|.+.++.+.+.. +.+...+.
T Consensus 698 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~ 774 (899)
T TIGR02917 698 QHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRT 774 (899)
T ss_pred hCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 2233445555556666666666666666665543 233455556666666666666666666665542 44556666
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 012577 339 ALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINA 418 (460)
Q Consensus 339 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 418 (460)
.+...|...|++++|.++|+++.+.. +++...++.+...+.+.|+ .+|+.+++++.+.. +.+..++..+...+...
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 850 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEK 850 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 66666666666666666666665543 2344556666666666666 55666666666543 44455566666666666
Q ss_pred CC--chhhhHHHHHhCCCCcCHHHHHHH
Q 012577 419 KT--PAYGIRDRMRADNVFPNKALAAQV 444 (460)
Q Consensus 419 g~--~~~~~~~~m~~~~~~p~~~~~~~l 444 (460)
|+ .+..+++.+.+.+-. +..++..+
T Consensus 851 g~~~~A~~~~~~a~~~~~~-~~~~~~~l 877 (899)
T TIGR02917 851 GEADRALPLLRKAVNIAPE-AAAIRYHL 877 (899)
T ss_pred CCHHHHHHHHHHHHhhCCC-ChHHHHHH
Confidence 66 455566666654422 55555555
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-26 Score=234.64 Aligned_cols=398 Identities=14% Similarity=0.028 Sum_probs=349.6
Q ss_pred CCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHH
Q 012577 21 DLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTL 99 (460)
Q Consensus 21 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~l 99 (460)
+.+...+..+...+...|++++|.+.|+.+.... +.+...+..+...+.+.|+.++|..+++++....| +...+..+
T Consensus 496 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 573 (899)
T TIGR02917 496 PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALAL 573 (899)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHH
Confidence 4456677888888899999999999999998765 55777888999999999999999999999866544 56778889
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCh
Q 012577 100 LANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDL 178 (460)
Q Consensus 100 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 178 (460)
+..+.+.|++++|..+++.+.+.. +.+...|..+..++...|+ ++|...++.+.+.. +.+...+..+..++.+.|++
T Consensus 574 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 651 (899)
T TIGR02917 574 AQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNY 651 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 999999999999999999998764 5578899999999999999 99999999998764 55677889999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 012577 179 TGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLC 258 (460)
Q Consensus 179 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 258 (460)
++|..+|+++.+.. +.+..++..++..+...|++++|.++++.+.+.+. .+...+..+...+...|++++|...++.+
T Consensus 652 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 729 (899)
T TIGR02917 652 AKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKA 729 (899)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999998765 55688999999999999999999999999988764 46778888999999999999999999987
Q ss_pred cc-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 012577 259 ES-NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAW 337 (460)
Q Consensus 259 ~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 337 (460)
.. .|+..++..++..+.+.|++++|.+.++.+.+..+ .+...+..+...|...|++++|...|+.+.+.. +.++.++
T Consensus 730 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 807 (899)
T TIGR02917 730 LKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVL 807 (899)
T ss_pred HhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 65 66667888899999999999999999999998754 378899999999999999999999999999874 6788999
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 012577 338 DALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYIN 417 (460)
Q Consensus 338 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 417 (460)
..+...+.+.|+ .+|..+++++.+..+- +..++..+...+...|++++|.++++++.+.+ +.+..++..+..++.+
T Consensus 808 ~~l~~~~~~~~~-~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 883 (899)
T TIGR02917 808 NNLAWLYLELKD-PRALEYAEKALKLAPN--IPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLA 883 (899)
T ss_pred HHHHHHHHhcCc-HHHHHHHHHHHhhCCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHH
Confidence 999999999999 8899999999876543 34577788889999999999999999999987 5589999999999999
Q ss_pred cCC--chhhhHHHHH
Q 012577 418 AKT--PAYGIRDRMR 430 (460)
Q Consensus 418 ~g~--~~~~~~~~m~ 430 (460)
.|+ .+..+++.|.
T Consensus 884 ~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 884 TGRKAEARKELDKLL 898 (899)
T ss_pred cCCHHHHHHHHHHHh
Confidence 999 6777777765
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-22 Score=183.46 Aligned_cols=246 Identities=13% Similarity=0.097 Sum_probs=184.2
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH----HHHHHH
Q 012577 163 FSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHR----WTCRLL 238 (460)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l 238 (460)
..+..+...|.+.|++++|.++|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL 186 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 356677778888888888888888887653 456777888888888888888888888888776543322 234556
Q ss_pred HHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHH
Q 012577 239 LPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLS 316 (460)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 316 (460)
...+...|++++|...++++.. .| +...+..+...+.+.|++++|.++|+++.+.+......+++.++.+|...|+++
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 6677778888888888877654 33 344677778888888888888888888887544333456788888899999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh---cCCHHHHHHHH
Q 012577 317 KGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAK---RGDIHSTEKIF 393 (460)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~ 393 (460)
+|...++.+.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+..++..++
T Consensus 267 ~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~ 341 (389)
T PRK11788 267 EGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLL 341 (389)
T ss_pred HHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHH
Confidence 999999988875 366666788888888999999999999888764 4777788877777664 45888899999
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCC
Q 012577 394 HRMRQVGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 394 ~~m~~~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
++|.+.++.|++. ..|.++|.
T Consensus 342 ~~~~~~~~~~~p~------~~c~~cg~ 362 (389)
T PRK11788 342 RDLVGEQLKRKPR------YRCRNCGF 362 (389)
T ss_pred HHHHHHHHhCCCC------EECCCCCC
Confidence 9888877776665 33555554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.9e-22 Score=182.40 Aligned_cols=288 Identities=15% Similarity=0.139 Sum_probs=164.9
Q ss_pred HHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---hhhhHHHHHHHHhcCc-h
Q 012577 70 IAKLRGLQKAESYIQKIPESFR-GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVT---SFACNQLLILYKRLDK-K 144 (460)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~~-~ 144 (460)
+...|++++|...|+++....| +..++..+...+...|++++|..+++.+...+..++ ...+..+...|...|+ +
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 3445555666666665554433 234455555555666666666666665554321111 1334455555555555 5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhCCChHHHHHHH
Q 012577 145 KVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD----SSTQAILAKHYVSGGRKEKAEAML 220 (460)
Q Consensus 145 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 220 (460)
+|..+|+.+.+.. +++..+++.++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5666666555442 34455666666666666666666666666665432221 123444555566666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCc
Q 012577 221 KEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NPW--LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKL 297 (460)
Q Consensus 221 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 297 (460)
+++.+... .+...+..+...+.+.|++++|.++++++.. .|+ ..+++.++.+|.+.|++++|...++.+.+.. |
T Consensus 204 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 280 (389)
T PRK11788 204 KKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--P 280 (389)
T ss_pred HHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Confidence 66665432 2334555566666666666666666666554 332 2345666666777777777777777666643 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---CCChhhHHHHHHHHHHh
Q 012577 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVE---GGEVEKADSILLKAQQQ 363 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~ 363 (460)
+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.++
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 4445566666777777777777777766654 4666666666655553 34666777777666543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-20 Score=167.94 Aligned_cols=410 Identities=14% Similarity=0.096 Sum_probs=317.0
Q ss_pred CHHHHHHHHHHHHhcccchhHHHHHHHHHhccc--------------------------------CCCChhhhHHHHHHH
Q 012577 23 SRAEIALAMANLRTRRMYGKALQLSEWLETNKK--------------------------------LDFIERDYASCLDLI 70 (460)
Q Consensus 23 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~ 70 (460)
.......+.+.+.+.|++.+|.+.....-..++ .+--.++|+.+.+.+
T Consensus 47 ~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 47 GSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANIL 126 (966)
T ss_pred cchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 344567788888899999999876655443320 112345677788888
Q ss_pred HHhhCHHHHHHHHHhcccCCC-chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHH-HHHHHhcCc-hHHH
Q 012577 71 AKLRGLQKAESYIQKIPESFR-GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQL-LILYKRLDK-KKVA 147 (460)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-l~~~~~~~~-~~a~ 147 (460)
-..|++++|+.+++.+.+..| .+..|..+..++...|+.+.|.+.|.+.++. .|+.....+- .......|. .+|.
T Consensus 127 kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 888888888888888777645 4678888888888888888888888888775 3555444333 334445566 7777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 012577 148 DVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD-SSTQAILAKHYVSGGRKEKAEAMLKEMEGD 226 (460)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (460)
..|.+..... +-=...|+.|.-.+...|++..|++.|++.... .|+ ...|-.|.+.|-..+.++.|...|.+....
T Consensus 205 ~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 205 ACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 7776666542 223456888888888999999999999998876 344 678888999999999999999998887764
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHH
Q 012577 227 NLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NPW-LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTA 304 (460)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 304 (460)
.. -....+..+...|...|.++.|.+.+++... +|+ ...|+.|..++-..|++.+|.+.|+..+..... ...+.+.
T Consensus 282 rp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~N 359 (966)
T KOG4626|consen 282 RP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNN 359 (966)
T ss_pred CC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHH
Confidence 32 2456777888888999999999999998776 554 558999999999999999999999998886443 4567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCH-HHHHHHHHHHHhc
Q 012577 305 LLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMF-SSYMLIMDQYAKR 383 (460)
Q Consensus 305 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 383 (460)
|...|...|.+++|..+|....+-. +--...++.|...|-..|++++|+..+++++. +.|+. ..|+.+...|...
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHh
Confidence 9999999999999999999988852 33456788999999999999999999998875 55653 5788899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCchhhhHHHHHhCCCCcCH-HHHHHH
Q 012577 384 GDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGIRDRMRADNVFPNK-ALAAQV 444 (460)
Q Consensus 384 g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~-~~~~~l 444 (460)
|+.+.|.+.+.+.+..+ +.=...++.|...|-.+|+-..+|-.--....++||. ..|.-+
T Consensus 436 g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred hhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence 99999999999999865 4456788999999999999666666555666788884 344433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-19 Score=172.82 Aligned_cols=333 Identities=10% Similarity=-0.050 Sum_probs=262.1
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHH
Q 012577 24 RAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLAN 102 (460)
Q Consensus 24 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~ 102 (460)
...+..++..+.+.|++++|..+++...... +-+...+..++.+....|+++.|...|+++....| +...+..+...
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3456677788888999999999998888775 44556677777777889999999999999887755 46678888889
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHH
Q 012577 103 CVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGM 181 (460)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 181 (460)
+.+.|++++|...+++..+.. +.+...+..+..++...|+ ++|...++.+.... +.+...+..+ ..+...|++++|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHH
Confidence 999999999999999998863 3456777888888888888 88998888876653 2333344333 347889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH----HHHHHHH
Q 012577 182 DQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQ----VARIWKL 257 (460)
Q Consensus 182 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~ 257 (460)
...++.+......++...+..+..++...|++++|+..++++.+.... +...+..+..++...|++++ |...++.
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 999999877643344555566677888999999999999999876543 56777888999999999886 7888887
Q ss_pred hcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-
Q 012577 258 CES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGP- 334 (460)
Q Consensus 258 ~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~- 334 (460)
... .| +...+..+...+.+.|++++|...+++..+..+. +...+..+...+.+.|++++|...++.+.+.+ |+.
T Consensus 276 Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~ 352 (656)
T PRK15174 276 ALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTS 352 (656)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccch
Confidence 665 45 5567888899999999999999999998886543 56677788899999999999999999988753 443
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhCC
Q 012577 335 LAWDALVKLHVEGGEVEKADSILLKAQQQNK 365 (460)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 365 (460)
..+..+..++...|+.++|...|+++.+..+
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 3444456778899999999999999877653
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-18 Score=169.95 Aligned_cols=397 Identities=10% Similarity=-0.024 Sum_probs=283.3
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHHHHc
Q 012577 27 IALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLANCVA 105 (460)
Q Consensus 27 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~ 105 (460)
+......+.+.|++++|+..|+...... |++..|..+..+|.+.|++++|++.++......| +...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECK---PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4455666788899999999999988654 5677899999999999999999999999877655 46788999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCChhhhHHHHH-HHHhcCchHHHHHHHH-------------HHH-c-------------C
Q 012577 106 GNNVKKAEEVFNRMKDKGFPVTSFACNQLLI-LYKRLDKKKVADVLLL-------------MEK-E-------------N 157 (460)
Q Consensus 106 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~-~~~~~~~~~a~~~~~~-------------~~~-~-------------~ 157 (460)
.|++++|+.-|......+...+.. ...++. .+.......+...+.. ... . .
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 999999999887765542111111 111111 1111000111111100 000 0 0
Q ss_pred CCCCH-HHHHHHHHH---HhhcCChhHHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC
Q 012577 158 VKLTQ-FSYKILIDI---KGQSNDLTGMDQVVEAMKSEG-I-EPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEH 231 (460)
Q Consensus 158 ~~~~~-~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 231 (460)
..+.. ..+..+... ....+++++|.+.|+...+.+ . +.....|+.+...+...|++++|+..|++..+.... .
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-V 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-c
Confidence 00100 000111100 123467899999999998764 2 234567888888899999999999999999876432 3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHH
Q 012577 232 RWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVY 309 (460)
Q Consensus 232 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 309 (460)
...|..+...+...|++++|...|+.... .| +...+..+...+...|++++|...|++..+..+. +...+..+...+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~ 443 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHH
Confidence 56788888999999999999999987655 44 5668888999999999999999999999886543 667788888999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCc----CH-HHHHHHHHHHHhcC
Q 012577 310 ADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKP----MF-SSYMLIMDQYAKRG 384 (460)
Q Consensus 310 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~-~~~~~l~~~~~~~g 384 (460)
.+.|++++|...++...+. .+.+...++.+...+...|++++|.+.|++..+..+-.. +. ..++.....+...|
T Consensus 444 ~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 9999999999999999876 355678899999999999999999999999876542111 11 11222223344569
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHHh
Q 012577 385 DIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMRA 431 (460)
Q Consensus 385 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~ 431 (460)
++++|.+++++..+.+ +.+...+..+...+...|+ .|...+++..+
T Consensus 523 ~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 523 DFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred hHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999988875 5566688999999999999 45556655443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-18 Score=179.59 Aligned_cols=392 Identities=11% Similarity=0.053 Sum_probs=268.8
Q ss_pred HHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCch---hHHHH----------
Q 012577 32 ANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGE---VVYRT---------- 98 (460)
Q Consensus 32 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~---------- 98 (460)
..+...|++++|+..|+...... |.+...+..+...+.+.|++++|+..|++.....|+. ..|..
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 44567788899999998888764 4567788888888889999999999988876654432 12221
Q ss_pred --HHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHH-----
Q 012577 99 --LLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILID----- 170 (460)
Q Consensus 99 --ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~----- 170 (460)
....+.+.|++++|...|++..+.. +.+...+..+..++...|+ ++|.+.|++..+.. +.+...+..+..
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 2345677888999999998888764 3356666677778888888 88888888877653 233333333333
Q ss_pred -------------------------------------HHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh
Q 012577 171 -------------------------------------IKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRK 213 (460)
Q Consensus 171 -------------------------------------~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~ 213 (460)
.+...|++++|++.|++..+.. +-+...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 3445566666776666666553 23455556666667777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccC---CCH---------HHHHHHHHHHHccCCHH
Q 012577 214 EKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESN---PWL---------DVCMAAIEAWGKLNKVE 281 (460)
Q Consensus 214 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~---------~~~~~li~~~~~~~~~~ 281 (460)
++|...++++.+.... +...+..+...+...++.++|...++.+... +.. ..+......+...|+.+
T Consensus 512 ~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 7777777766654322 3333334444455666677776666655321 111 11223455677778888
Q ss_pred HHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 012577 282 EAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQ 361 (460)
Q Consensus 282 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 361 (460)
+|..+++. .+++...+..+...+.+.|++++|...|+...+.. +.+...+..+...|...|++++|.+.++.+.
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 88887762 23456677888999999999999999999999874 5578899999999999999999999999887
Q ss_pred HhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--Cc---cHHHHHHHHHHHHhcCC--chhhhH-HHHHhCC
Q 012577 362 QQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGY--VA---RFKQFQTLVQAYINAKT--PAYGIR-DRMRADN 433 (460)
Q Consensus 362 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~~---~~~~~~~l~~~~~~~g~--~~~~~~-~~m~~~~ 433 (460)
+..+ .+...+..+..++...|++++|.++++++....- +| +...+..+...+...|+ .|...+ ..|...|
T Consensus 665 ~~~p--~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~ 742 (1157)
T PRK11447 665 ATAN--DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASG 742 (1157)
T ss_pred ccCC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Confidence 6432 2345667788889999999999999999987531 22 23466667888888888 455555 4455556
Q ss_pred CCcC
Q 012577 434 VFPN 437 (460)
Q Consensus 434 ~~p~ 437 (460)
+.|+
T Consensus 743 ~~~~ 746 (1157)
T PRK11447 743 ITPT 746 (1157)
T ss_pred CCCC
Confidence 6543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-20 Score=165.30 Aligned_cols=380 Identities=13% Similarity=0.054 Sum_probs=317.9
Q ss_pred CCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHH-H
Q 012577 21 DLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRT-L 99 (460)
Q Consensus 21 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-l 99 (460)
+--.+.+..+...+..+|++..|+.+++.+.+.. |.....|..+..++...|+.+.|...|.+.....|+.....+ +
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~l 190 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDL 190 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcch
Confidence 3346788889999999999999999999999875 456788999999999999999999999998877777655444 4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCC
Q 012577 100 LANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLT-QFSYKILIDIKGQSND 177 (460)
Q Consensus 100 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~ 177 (460)
...+...|+..+|...|.+.++.. +-=...|+.|...+...|+ ..|.+.|++..+. .|+ ...|-.|...|...+.
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhc
Confidence 455566899999999999988863 2235678888888888898 8999999988875 444 5678899999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012577 178 LTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKL 257 (460)
Q Consensus 178 ~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (460)
++.|...|.+..... +.....+..+...|...|+.|.|+..|++.++..+. -...|+.|..++-..|++.+|.+.+..
T Consensus 268 ~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred chHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHH
Confidence 999999999988763 445788889999999999999999999999886543 346899999999999999999999998
Q ss_pred hcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H
Q 012577 258 CES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIG-P 334 (460)
Q Consensus 258 ~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~ 334 (460)
... .| ...+.+.|...|...|.++.|..+|....+..+. -....+.|...|-++|++++|..-+++.++ +.|+ .
T Consensus 346 aL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fA 422 (966)
T KOG4626|consen 346 ALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFA 422 (966)
T ss_pred HHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHH
Confidence 765 44 5568899999999999999999999999885332 346789999999999999999999999988 4565 4
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHH
Q 012577 335 LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM-FSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVAR-FKQFQTLV 412 (460)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~l~ 412 (460)
..|+.+...|-..|+++.|.+.+.+++.-+ |. ...++.|...|...|++.+|+.-|++..+. +|| +..|..++
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~n---Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNll 497 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQIN---PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLL 497 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcC---cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHH
Confidence 789999999999999999999999987644 43 356788999999999999999999999985 454 44566665
Q ss_pred HHH
Q 012577 413 QAY 415 (460)
Q Consensus 413 ~~~ 415 (460)
.+.
T Consensus 498 h~l 500 (966)
T KOG4626|consen 498 HCL 500 (966)
T ss_pred HHH
Confidence 553
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-18 Score=169.49 Aligned_cols=332 Identities=9% Similarity=0.016 Sum_probs=271.8
Q ss_pred hhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHH
Q 012577 60 ERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILY 138 (460)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 138 (460)
......++..+.+.|++++|..+++.+....| +...+..++.+....|++++|...|+++.+.. |.+...+..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 33455677788899999999999999877655 45667777778888999999999999999874 34567778888888
Q ss_pred HhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 012577 139 KRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAE 217 (460)
Q Consensus 139 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 217 (460)
...|+ ++|...++...... +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|.
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHH
Confidence 89998 99999999998863 4567788899999999999999999999887664 2334444444 3478899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHH----HHHHHHHHH
Q 012577 218 AMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEE----AEAVFKRMS 291 (460)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~----a~~~~~~m~ 291 (460)
..++.+.+....++......+..++...|++++|...++.... .| +...+..+...+...|++++ |...|+...
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 9999988775444555566667889999999999999998765 44 56678889999999999986 899999999
Q ss_pred hcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCH-
Q 012577 292 KTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMF- 370 (460)
Q Consensus 292 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 370 (460)
+..+. +...+..+...+...|++++|...++...+.. +.+...+..+..++.+.|++++|...++.+.... |+.
T Consensus 278 ~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~---P~~~ 352 (656)
T PRK15174 278 QFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK---GVTS 352 (656)
T ss_pred hhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---ccch
Confidence 86544 67889999999999999999999999999864 4567788889999999999999999999998765 333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 371 SSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
..+..+..++...|+.++|.+.|++..+..
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 234445678899999999999999998763
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.4e-18 Score=173.93 Aligned_cols=372 Identities=11% Similarity=0.020 Sum_probs=285.1
Q ss_pred CCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhh------------HHHHHHHHHhhCHHHHHHHHHhcc
Q 012577 20 NDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDY------------ASCLDLIAKLRGLQKAESYIQKIP 87 (460)
Q Consensus 20 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~ 87 (460)
.+-++..+..+...+.+.|++++|+..|+...+..+-.+....+ ......+.+.|++++|+..|+++.
T Consensus 299 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al 378 (1157)
T PRK11447 299 NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR 378 (1157)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34477888888999999999999999999988765222221111 122456678899999999999987
Q ss_pred cCCC-chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHH------------------------------
Q 012577 88 ESFR-GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLI------------------------------ 136 (460)
Q Consensus 88 ~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~------------------------------ 136 (460)
...| +...+..+...+...|++++|++.|++..+... .+...+..+..
T Consensus 379 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~ 457 (1157)
T PRK11447 379 QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIER 457 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7655 466778888999999999999999999987642 23333332222
Q ss_pred ------------HHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 012577 137 ------------LYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAIL 203 (460)
Q Consensus 137 ------------~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 203 (460)
.+...|+ ++|...+++..+.. +-+...+..+...|.+.|++++|...++++.+.. +.+...+..+
T Consensus 458 ~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~ 535 (1157)
T PRK11447 458 SLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAY 535 (1157)
T ss_pred HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 2334455 78888888887764 3456678889999999999999999999998754 3455666666
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHH
Q 012577 204 AKHYVSGGRKEKAEAMLKEMEGDNLKEHRW---------TCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAW 274 (460)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~ 274 (460)
...+...++.++|+..++.+......++.. .+..+...+...|+.++|..+++. ..++...+..+...+
T Consensus 536 al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~--~p~~~~~~~~La~~~ 613 (1157)
T PRK11447 536 GLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ--QPPSTRIDLTLADWA 613 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh--CCCCchHHHHHHHHH
Confidence 666788999999999998875433222221 123456778899999999999983 234555678889999
Q ss_pred HccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHH
Q 012577 275 GKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKAD 354 (460)
Q Consensus 275 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 354 (460)
.+.|++++|+..|+...+..+. +...+..++..|...|++++|.+.++.+.+.. +.+..++..+..++...|++++|.
T Consensus 614 ~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~ 691 (1157)
T PRK11447 614 QQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQ 691 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999999987554 78889999999999999999999999887752 345677778888999999999999
Q ss_pred HHHHHHHHhCCCCc----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 355 SILLKAQQQNKFKP----MFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 355 ~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
++++.+....+-.| +...+..+...+...|++++|++.|++...
T Consensus 692 ~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 692 RTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999977543223 224566667889999999999999998864
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-17 Score=161.58 Aligned_cols=417 Identities=11% Similarity=0.017 Sum_probs=313.6
Q ss_pred HhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhH
Q 012577 17 EEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVV 95 (460)
Q Consensus 17 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~ 95 (460)
....++++..+...+......|+.++|++++..+.... +.+...+..+..++...|++++|..+|++.....| +...
T Consensus 8 ~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a 85 (765)
T PRK10049 8 ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDY 85 (765)
T ss_pred hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 34567899999999999999999999999999887633 45666789999999999999999999999766644 4667
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 012577 96 YRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQ 174 (460)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 174 (460)
+..+...+...|++++|...+++..+.. +.+.. +..+..++...|+ ++|...++++.+.. +.+...+..+...+..
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 7888889999999999999999998873 34555 7778778888888 99999999999874 4456666778888889
Q ss_pred cCChhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHh-----CCCh---HHHHHHHHHHHhC-CCCCCHH-HH---
Q 012577 175 SNDLTGMDQVVEAMKSEGIEPDS------STQAILAKHYVS-----GGRK---EKAEAMLKEMEGD-NLKEHRW-TC--- 235 (460)
Q Consensus 175 ~~~~~~a~~~~~~m~~~g~~~~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~-~~~~~~~-~~--- 235 (460)
.+..+.|++.++.... .|+. .....++..... .+++ ++|+..++.+.+. ...|+.. .+
T Consensus 163 ~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a 239 (765)
T PRK10049 163 NRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA 239 (765)
T ss_pred CCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence 9999999999987664 2321 112222332221 2234 7788888888854 2222221 11
Q ss_pred -HHHHHHHHhcCChhHHHHHHHHhccCC-C-H-HHHHHHHHHHHccCCHHHHHHHHHHHHhcccCc---CHHHHHHHHHH
Q 012577 236 -RLLLPLYAELGKADQVARIWKLCESNP-W-L-DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKL---STKHYTALLKV 308 (460)
Q Consensus 236 -~~l~~~~~~~~~~~~a~~~~~~~~~~~-~-~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~ 308 (460)
...+.++...|++++|...|+.+...+ . + ..-..+...|...|++++|+..|+.+.+..... .......+..+
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a 319 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS 319 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence 111344567799999999999987642 1 1 122335778999999999999999987654221 13456667778
Q ss_pred HHhcCCHHHHHHHHHHHHHcC-----------CCCC---HHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHH
Q 012577 309 YADHKMLSKGKDLVKQMAESG-----------CHIG---PLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYM 374 (460)
Q Consensus 309 ~~~~g~~~~a~~~~~~~~~~~-----------~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 374 (460)
+...|++++|..+++.+.+.. -.|+ ...+..+...+...|++++|+++++++....+ .+...+.
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P--~n~~l~~ 397 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP--GNQGLRI 397 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHH
Confidence 899999999999999998752 0123 23456677788899999999999999987654 3456888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHHhCCCCcCHHHHHHHHH
Q 012577 375 LIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMRADNVFPNKALAAQVAQ 446 (460)
Q Consensus 375 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~~~~~~l~~ 446 (460)
.+...+...|++++|++.+++..... |.+...+..+...+...|+ .+..+++.+.+ ..|+......|.+
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~ 468 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLAR 468 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 88999999999999999999999875 5567778888888888888 67778877777 5677776666633
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.1e-17 Score=137.49 Aligned_cols=399 Identities=13% Similarity=0.143 Sum_probs=285.8
Q ss_pred hcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhh---------------------------CHHHHHHHHHhccc
Q 012577 36 TRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLR---------------------------GLQKAESYIQKIPE 88 (460)
Q Consensus 36 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------------------~~~~a~~~~~~~~~ 88 (460)
..|....+.-+|+.|+..+ .+.++...-.++...+-.+ +-+-|.-+|+..+
T Consensus 127 S~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P- 204 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP- 204 (625)
T ss_pred hhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC-
Confidence 3455666666666666665 5555555555544432211 1112334444444
Q ss_pred CCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHH
Q 012577 89 SFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKIL 168 (460)
Q Consensus 89 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (460)
.+..+|..+|.++++--..+.|.+++++-.....+.+..+||.+|.+-.-... .+++.+|.+..+.||..|+|++
T Consensus 205 --KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~---K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 205 --KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG---KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred --CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc---HHHHHHHHHhhcCCchHhHHHH
Confidence 46678999999999999999999999999988889999999999986544332 6788899999999999999999
Q ss_pred HHHHhhcCChhH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH-HHHHHHHHHh----CCCC----CCHHHH
Q 012577 169 IDIKGQSNDLTG----MDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEK-AEAMLKEMEG----DNLK----EHRWTC 235 (460)
Q Consensus 169 i~~~~~~~~~~~----a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~----~~~~~~ 235 (460)
+++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. ...+ -|...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998875 56778889999999999999999999999988755 4444444443 2222 245667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccC-------CCHH---HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHH
Q 012577 236 RLLLPLYAELGKADQVARIWKLCESN-------PWLD---VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTAL 305 (460)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 305 (460)
...|..|.+..+.+.|.++..-+... |+.. -|..+....|+....+.-...|+.|.-.-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 78889999999999999887766542 2211 2566778888889999999999999988788899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-Chh-h------------HHHHHH-------HHHHhC
Q 012577 306 LKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGG-EVE-K------------ADSILL-------KAQQQN 364 (460)
Q Consensus 306 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~-~------------a~~~~~-------~~~~~~ 364 (460)
+.+....|+++-.-+++..++..|...+.....-++..+++.. ... - |..+++ ++. ..
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r-~~ 518 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR-AQ 518 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH-hc
Confidence 9999999999999999999999886666666666666666554 110 0 111111 111 11
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCccHHHHH---HHHHHHHhcCC--chhhhHHHHHhCCCCcCH
Q 012577 365 KFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG-YVARFKQFQ---TLVQAYINAKT--PAYGIRDRMRADNVFPNK 438 (460)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~---~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~ 438 (460)
.+. ....+.+.-.+.+.|..++|.+++.-+.+.+ --|-....| .|+++-...+. .|...++.|...++..-.
T Consensus 519 ~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E 596 (625)
T KOG4422|consen 519 DWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICE 596 (625)
T ss_pred cCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhh
Confidence 233 3466777788999999999999999886543 234444455 55566556565 566677777666655444
Q ss_pred HHHHHH
Q 012577 439 ALAAQV 444 (460)
Q Consensus 439 ~~~~~l 444 (460)
....-+
T Consensus 597 ~La~RI 602 (625)
T KOG4422|consen 597 GLAQRI 602 (625)
T ss_pred HHHHHH
Confidence 344443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-17 Score=160.97 Aligned_cols=395 Identities=9% Similarity=-0.041 Sum_probs=290.4
Q ss_pred HHHHHHHHHHhC--CCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHh
Q 012577 8 IHSTLTKYAEEG--NDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQK 85 (460)
Q Consensus 8 ~~~~l~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 85 (460)
...++..|.+.. .+.+...+..+...+...|++++|+++++...... |.+...+..++..+...|++++|...+++
T Consensus 31 ~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~ 108 (765)
T PRK10049 31 DAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQ 108 (765)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344555555543 34556678888999999999999999999988774 55666778888999999999999999999
Q ss_pred cccCCCc-hhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCH-
Q 012577 86 IPESFRG-EVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQ- 162 (460)
Q Consensus 86 ~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~- 162 (460)
+....|+ .. +..+...+...|+.++|+..++++.+.. +.+...+..+..++...+. +.|...++.... .|+.
T Consensus 109 ~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~ 183 (765)
T PRK10049 109 LVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEK 183 (765)
T ss_pred HHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHH
Confidence 8777564 45 8888899999999999999999999874 3355555666667777676 778887776553 2321
Q ss_pred -----HHHHHHHHHHh-----hcCCh---hHHHHHHHHHHhC-CCCCCHH-HH----HHHHHHHHhCCChHHHHHHHHHH
Q 012577 163 -----FSYKILIDIKG-----QSNDL---TGMDQVVEAMKSE-GIEPDSS-TQ----AILAKHYVSGGRKEKAEAMLKEM 223 (460)
Q Consensus 163 -----~~~~~li~~~~-----~~~~~---~~a~~~~~~m~~~-g~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~ 223 (460)
.....++.... ..+++ ++|++.++.+.+. .-.|+.. .+ ...+.++...|++++|+..|+.+
T Consensus 184 ~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~l 263 (765)
T PRK10049 184 RDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRL 263 (765)
T ss_pred HHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 11222233222 22334 7788899988854 1123221 11 11134556779999999999999
Q ss_pred HhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhccc-
Q 012577 224 EGDNLK-EHRWTCRLLLPLYAELGKADQVARIWKLCES-NPW-----LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWK- 295 (460)
Q Consensus 224 ~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~- 295 (460)
.+.+.. |+. ....+..+|...|++++|...|+.+.. .|. ......+..++...|++++|.+.++.+....+
T Consensus 264 l~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~ 342 (765)
T PRK10049 264 KAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPP 342 (765)
T ss_pred hccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCc
Confidence 987643 332 223357789999999999999998765 332 23456667788999999999999999987532
Q ss_pred ----------CcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 296 ----------KLS---TKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 296 ----------~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
.|+ ...+..+...+...|++++|.++++++... .+.+...+..+...+...|++++|++.++++.+
T Consensus 343 ~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 343 FLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEV 421 (765)
T ss_pred eEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 123 234566788899999999999999999887 366788999999999999999999999999987
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 012577 363 QNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAY 415 (460)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 415 (460)
..+ .+...+......+.+.|++++|+.+++++.+. .|+...-..+-+.+
T Consensus 422 l~P--d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 422 LEP--RNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred hCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 653 23456666777889999999999999999986 45544444444444
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-16 Score=152.39 Aligned_cols=370 Identities=11% Similarity=-0.004 Sum_probs=266.8
Q ss_pred CCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHH
Q 012577 20 NDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRT 98 (460)
Q Consensus 20 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ 98 (460)
..|++..+..+...+.+.|++++|++.++...... |.....+..+..++...|++++|...|..+....+ +......
T Consensus 156 ~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~ 233 (615)
T TIGR00990 156 CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQ 233 (615)
T ss_pred cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 34567788888888999999999999999988765 55677888999999999999999988876543211 1111111
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCC-----------------------------CCChhhhHHHHHHH------HhcCc
Q 012577 99 LLANCVAGNNVKKAEEVFNRMKDKGF-----------------------------PVTSFACNQLLILY------KRLDK 143 (460)
Q Consensus 99 ll~~~~~~~~~~~a~~~~~~m~~~g~-----------------------------~~~~~~~~~ll~~~------~~~~~ 143 (460)
++..+.. ..+........+... ..+...-...+... ...+.
T Consensus 234 ~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~ 309 (615)
T TIGR00990 234 AVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADES 309 (615)
T ss_pred HHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhh
Confidence 1111110 011111111111100 00000000111111 01123
Q ss_pred -hHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 012577 144 -KKVADVLLLMEKEN-VKL-TQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAML 220 (460)
Q Consensus 144 -~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 220 (460)
++|...|+.....+ ..| ....|+.+...+...|++++|+..|++..+.. +.+..+|..+...+...|++++|+..|
T Consensus 310 y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~ 388 (615)
T TIGR00990 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDF 388 (615)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 78888998888764 233 45578888889999999999999999998764 334678889999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcC
Q 012577 221 KEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLS 298 (460)
Q Consensus 221 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 298 (460)
+++.+... .+..++..+...+...|++++|...|+.... .| +...+..+...+.+.|++++|+..|++..+..+. +
T Consensus 389 ~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~ 466 (615)
T TIGR00990 389 DKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-A 466 (615)
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-C
Confidence 99988653 3567888999999999999999999998765 45 5667888899999999999999999999876433 6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHH
Q 012577 299 TKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGP------LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSS 372 (460)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 372 (460)
...++.+...+...|++++|...|+...+..-..+. ..++.....+...|++++|.++++++.+..+ .+...
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p--~~~~a 544 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP--ECDIA 544 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC--CcHHH
Confidence 788999999999999999999999998875311111 1122223334457999999999999876542 33457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 373 YMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 373 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
+..+...+.+.|++++|++.|++..+..
T Consensus 545 ~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 545 VATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 8889999999999999999999998764
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-17 Score=140.72 Aligned_cols=392 Identities=12% Similarity=0.094 Sum_probs=278.1
Q ss_pred CCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCc------h
Q 012577 20 NDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRG------E 93 (460)
Q Consensus 20 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~ 93 (460)
..++-..+..+...+.....+.+|+..|+.+.++.-++.....-..+.+.+.+.+.+.+|+++++......|+ .
T Consensus 197 ldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~ri 276 (840)
T KOG2003|consen 197 LDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRI 276 (840)
T ss_pred ccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHH
Confidence 3456667777777788888888999999888887755544444455777788888899999988876655453 2
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChh-hhHHHHHHHHhcCchHHHHHHHHHHHcCCCC------------
Q 012577 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSF-ACNQLLILYKRLDKKKVADVLLLMEKENVKL------------ 160 (460)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~------------ 160 (460)
...+.+.-.+.+.|+++.|+..|+...+. .|+.. .+|..|.+++-...++..+.|..|......|
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 34555666688889999999999888776 35544 4555555555444477777777776542222
Q ss_pred CHHHHHHH---------------------------------------------------------------HHHHhhcCC
Q 012577 161 TQFSYKIL---------------------------------------------------------------IDIKGQSND 177 (460)
Q Consensus 161 ~~~~~~~l---------------------------------------------------------------i~~~~~~~~ 177 (460)
+....+.- ..-+.+.|+
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 11111110 112567888
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHH--H----------------------------------HHHHhCCChHHHHHHHH
Q 012577 178 LTGMDQVVEAMKSEGIEPDSSTQAIL--A----------------------------------KHYVSGGRKEKAEAMLK 221 (460)
Q Consensus 178 ~~~a~~~~~~m~~~g~~~~~~~~~~l--~----------------------------------~~~~~~~~~~~a~~~~~ 221 (460)
++.|++++.-+....-+.-...-+.| + +.....|++++|...|+
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 88888888776643211111000100 0 01112577888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCH
Q 012577 222 EMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES--NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLST 299 (460)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 299 (460)
+....+-......|+ +.-.+...|++++|++.|-.+.. ..+....-.+...|-...+...|++++-+.... ++.|+
T Consensus 515 eal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp 592 (840)
T KOG2003|consen 515 EALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDP 592 (840)
T ss_pred HHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCH
Confidence 888765443333343 33345678888898888876654 445566667778888888889999988877664 45578
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012577 300 KHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQ 379 (460)
Q Consensus 300 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (460)
.....|...|-+.|+-..|.+.+-+--+. ++-|..+...|...|....-+++++.+|++.. -+.|+..-|..++..
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwqlmias 668 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIAS 668 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHH
Confidence 88999999999999999998887666555 67789999999999999999999999999874 367999999988765
Q ss_pred -HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 012577 380 -YAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 380 -~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
+.+.|++++|.++|++..+. ++.|......|++.+...|-
T Consensus 669 c~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 46789999999999999876 68899999999999998886
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-14 Score=142.28 Aligned_cols=408 Identities=8% Similarity=-0.049 Sum_probs=270.0
Q ss_pred CHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCCh-hhhHHHHHHHHHhhCHHHHHHHHHhcccCCCc---hhHHHH
Q 012577 23 SRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIE-RDYASCLDLIAKLRGLQKAESYIQKIPESFRG---EVVYRT 98 (460)
Q Consensus 23 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~ 98 (460)
.+.....-+....+.|+++.|++.|+.+.+.. |.+. ..+ .++..+...|+.++|+.++++... |+ ......
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~lla 107 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLAS 107 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHH
Confidence 44555555566778899999999999888765 2222 233 788888888999999999999874 43 223333
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC
Q 012577 99 LLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSND 177 (460)
Q Consensus 99 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 177 (460)
+...+...|++++|+++|+++.+... -++..+..+...+...++ ++|.+.++.+... .|+...+..++..+...++
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~ 184 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDR 184 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcch
Confidence 35678888999999999999988753 346666677777788877 8888888888776 5666666555555545666
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHH------------------------------------
Q 012577 178 LTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLK------------------------------------ 221 (460)
Q Consensus 178 ~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------------------------------------ 221 (460)
..+|++.++++.+.. +.+...+..+..+..+.|-...|.++..
T Consensus 185 ~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 185 NYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 666999999998874 4456666666666666555444443332
Q ss_pred ------------HHHhC-CCCCCH-----HHHHHHHHHHHhcCChhHHHHHHHHhccCC---CHHHHHHHHHHHHccCCH
Q 012577 222 ------------EMEGD-NLKEHR-----WTCRLLLPLYAELGKADQVARIWKLCESNP---WLDVCMAAIEAWGKLNKV 280 (460)
Q Consensus 222 ------------~~~~~-~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~li~~~~~~~~~ 280 (460)
.+... +..|.. ....-.+-++...|+..++.+.++.+...+ ...+-..+.++|...+++
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 22221 111211 112234456677788888888888777533 233456777888888888
Q ss_pred HHHHHHHHHHHhcc-----cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCCH---HHHHHHH
Q 012577 281 EEAEAVFKRMSKTW-----KKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGC-----------HIGP---LAWDALV 341 (460)
Q Consensus 281 ~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~li 341 (460)
++|..+|+.+.... ..++......|.-+|...+++++|..+++.+.+... .||+ ..+..++
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 88888888876543 122333456778888888888888888888876311 1221 2344456
Q ss_pred HHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC-
Q 012577 342 KLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT- 420 (460)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~- 420 (460)
..+...|++.+|++.++++....+ -|......+...+...|.+.+|++.++...... +-+..+......++...|+
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~aP--~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~ 500 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSSTAP--ANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEW 500 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhH
Confidence 667778888888888888866543 355667777788888888888888887666653 5556677777777777777
Q ss_pred -chhhhHHHHHhCCCCcCHHHHHHH
Q 012577 421 -PAYGIRDRMRADNVFPNKALAAQV 444 (460)
Q Consensus 421 -~~~~~~~~m~~~~~~p~~~~~~~l 444 (460)
.+..+.+...+ ..|+.....-|
T Consensus 501 ~~A~~~~~~l~~--~~Pe~~~~~~l 523 (822)
T PRK14574 501 HQMELLTDDVIS--RSPEDIPSQEL 523 (822)
T ss_pred HHHHHHHHHHHh--hCCCchhHHHH
Confidence 45455544444 34555444443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-14 Score=124.63 Aligned_cols=363 Identities=12% Similarity=0.108 Sum_probs=172.8
Q ss_pred CCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccC--CCchhHH
Q 012577 19 GNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPES--FRGEVVY 96 (460)
Q Consensus 19 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 96 (460)
..|-+++++..+|..+++....+.|.+++++..... .+.+..++|.+|.+-.-..+ .++..+|... .||..|+
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhH
Confidence 334455555555555555555555555555444433 23445555555544332222 2222222211 2555555
Q ss_pred HHHHHHHHcCCCHHH----HHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc--hHHHHHHHHHHH----cCC----CCCH
Q 012577 97 RTLLANCVAGNNVKK----AEEVFNRMKDKGFPVTSFACNQLLILYKRLDK--KKVADVLLLMEK----ENV----KLTQ 162 (460)
Q Consensus 97 ~~ll~~~~~~~~~~~----a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~--~~a~~~~~~~~~----~~~----~~~~ 162 (460)
|+++.+.++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++ ..+..+..++.. ... +.|.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 555555555554432 23444455555555555555555555555444 222222222221 111 1123
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHH
Q 012577 163 FSYKILIDIKGQSNDLTGMDQVVEAMKSEG----IEPD---SSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTC 235 (460)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 235 (460)
..|..-++.|.+..|.+-|.++..-+.... +.|+ ..-|..+....|+....+.....|+.|.-+-+-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 334444555555555555555544433210 1222 122334444445555555555555555554444555555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHh--cC
Q 012577 236 RLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYAD--HK 313 (460)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g 313 (460)
..++++..-.|.++-..++|..+.. |...-+-+-.++++..+......|+...-..+-....+ ..
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~-------------~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad 503 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKE-------------YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAAD 503 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHH-------------hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 5555555555555555555544321 11111112222333333333333332211111111111 11
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHH---HHHHHHHhcCCHHHHH
Q 012577 314 MLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYM---LIMDQYAKRGDIHSTE 390 (460)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~a~ 390 (460)
-.+....--.++... .......+.+...+.+.|+.++|++++..+.+...--|-....| -+++.-.+.++...|.
T Consensus 504 ~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~ 581 (625)
T KOG4422|consen 504 IKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAI 581 (625)
T ss_pred HHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 111122223334443 34556777888888999999999999998855443333333444 5666777888899999
Q ss_pred HHHHHHHHcCC
Q 012577 391 KIFHRMRQVGY 401 (460)
Q Consensus 391 ~~~~~m~~~~~ 401 (460)
.+++-|...+.
T Consensus 582 ~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 582 EVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHcCc
Confidence 99998877663
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-13 Score=136.30 Aligned_cols=232 Identities=12% Similarity=-0.013 Sum_probs=181.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCCHHHHHHHHHHH
Q 012577 196 DSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NPWLDVCMAAIEAW 274 (460)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~ 274 (460)
+...|..+..++.. +++++|+..+.+..... |+......+...+...|++++|...|+.+.. .|....+..+...+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 56777778777776 78888999888777654 5555444555666789999999999998765 34555667778888
Q ss_pred HccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHH
Q 012577 275 GKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKAD 354 (460)
Q Consensus 275 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 354 (460)
.+.|++++|...++...+..+. +...+..+.......|++++|...+++..+. .|+...+..+...+.+.|++++|.
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999886532 3333444444555669999999999999985 467889999999999999999999
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHHhC
Q 012577 355 SILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMRAD 432 (460)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~ 432 (460)
..+++.....+ .+...++.+..++...|++++|++.+++..+.. |-+...+..+..++...|+ .+...+++-.
T Consensus 630 ~~l~~AL~l~P--d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al-- 704 (987)
T PRK09782 630 SDLRAALELEP--NNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVI-- 704 (987)
T ss_pred HHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--
Confidence 99999987653 345677888889999999999999999999875 6678899999999999999 4444454444
Q ss_pred CCCcCH
Q 012577 433 NVFPNK 438 (460)
Q Consensus 433 ~~~p~~ 438 (460)
.+.|+.
T Consensus 705 ~l~P~~ 710 (987)
T PRK09782 705 DDIDNQ 710 (987)
T ss_pred hcCCCC
Confidence 455665
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-13 Score=134.61 Aligned_cols=366 Identities=9% Similarity=0.000 Sum_probs=265.2
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHHHH
Q 012577 26 EIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLANCV 104 (460)
Q Consensus 26 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~ 104 (460)
.+..++..+...|+.++|+..++..... .+........+...+...|++++|.++|+++.+..| +...+..++..+.
T Consensus 70 av~dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~ 147 (822)
T PRK14574 70 QVDDWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQA 147 (822)
T ss_pred hHHHHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Confidence 3447778788889999999998887722 233333444446678888999999999999877755 4566677778888
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHH--
Q 012577 105 AGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGM-- 181 (460)
Q Consensus 105 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a-- 181 (460)
..++.++|++.++++... .|+...+-.+...+...++ .+|.+.++++.+.. +-+...+..+..+..+.|-...|
T Consensus 148 ~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~ 224 (822)
T PRK14574 148 DAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALR 224 (822)
T ss_pred hcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 889999999999988776 3555555333223322333 56888888888774 33455555555555444433333
Q ss_pred ----------------------------------------------HHHHHHHHhC-CCCCC-HHH----HHHHHHHHHh
Q 012577 182 ----------------------------------------------DQVVEAMKSE-GIEPD-SST----QAILAKHYVS 209 (460)
Q Consensus 182 ----------------------------------------------~~~~~~m~~~-g~~~~-~~~----~~~l~~~~~~ 209 (460)
+.-++.+... +-.|. ... ..-.+-++..
T Consensus 225 l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~ 304 (822)
T PRK14574 225 LAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLV 304 (822)
T ss_pred HHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHH
Confidence 3333333321 11132 111 2234457788
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCC--------CHHHHHHHHHHHHccCCHH
Q 012577 210 GGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNP--------WLDVCMAAIEAWGKLNKVE 281 (460)
Q Consensus 210 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~ 281 (460)
.|++.++++.|+.+...+.+...++-..+.++|...+++++|..+++.+.... +......|.-+|...++++
T Consensus 305 r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~ 384 (822)
T PRK14574 305 RHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLD 384 (822)
T ss_pred hhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHH
Confidence 99999999999999988876566788899999999999999999999875421 2333577889999999999
Q ss_pred HHHHHHHHHHhccc-------------CcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 012577 282 EAEAVFKRMSKTWK-------------KLSTK-HYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG 347 (460)
Q Consensus 282 ~a~~~~~~m~~~~~-------------~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 347 (460)
+|..+++.+.+..+ .||-. .+..++..+...|++.+|++.++.+.... |-|......+...+...
T Consensus 385 ~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~R 463 (822)
T PRK14574 385 KAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLAR 463 (822)
T ss_pred HHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 99999999987322 22322 34456778889999999999999998874 77999999999999999
Q ss_pred CChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 348 GEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
|.+.+|.+.++.+.... +-+..+....+.++...|++.+|..+.+.+.+.
T Consensus 464 g~p~~A~~~~k~a~~l~--P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 464 DLPRKAEQELKAVESLA--PRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred CCHHHHHHHHHHHhhhC--CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999999997765543 234556677888889999999999999999875
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.1e-14 Score=132.36 Aligned_cols=414 Identities=14% Similarity=0.102 Sum_probs=223.5
Q ss_pred CCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccC-CCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCch--hHHH
Q 012577 21 DLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKL-DFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGE--VVYR 97 (460)
Q Consensus 21 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 97 (460)
+-+|..+..+...+...|++..++++...+...... +.-.+.|--+.++|-..|+++.|..+|.+.....++. ..+-
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 345666777777777777777777776665544311 1233456667777777777777777776655543433 2334
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-----hHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012577 98 TLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-----KKVADVLLLMEKENVKLTQFSYKILIDIK 172 (460)
Q Consensus 98 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 172 (460)
-+...+.+.|+.+.+...|+...+.. +-+..+...|...|+..+. +.|..++......- +.|...|-.+...+
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLL 424 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHH
Confidence 45666777777777777777766652 3344555555555554421 34444443333332 33344444333333
Q ss_pred hhcCChhHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC---CCCCCH------HHHHHHH
Q 012577 173 GQSNDLTGMDQVVEAMK----SEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD---NLKEHR------WTCRLLL 239 (460)
Q Consensus 173 ~~~~~~~~a~~~~~~m~----~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~ 239 (460)
....-+ .++.+|.... ..+-++.....|.+...+...|++.+|...|...... ...+|. .+--.+.
T Consensus 425 e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 322222 2233333222 2232344444555555555555555555554444332 111111 1111223
Q ss_pred HHHHhcCC----------------------------------hhHHHHHHHHhcc--CCCHHHHHHHHHHHHccCCHHHH
Q 012577 240 PLYAELGK----------------------------------ADQVARIWKLCES--NPWLDVCMAAIEAWGKLNKVEEA 283 (460)
Q Consensus 240 ~~~~~~~~----------------------------------~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a 283 (460)
..+-..++ ..+|..+++.... +.++..++.+...+.+...+..|
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence 33333334 4444444443322 22333333344445555555555
Q ss_pred HHHHHHHHhc-ccCcCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh
Q 012577 284 EAVFKRMSKT-WKKLSTKHYTALLKVYAD------------HKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEV 350 (460)
Q Consensus 284 ~~~~~~m~~~-~~~p~~~~~~~li~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 350 (460)
.+-|..+.+. ...+|+.+.-.|...|.+ .+..++|+++|...++.. +-|...-+-+.-.++..|++
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~ 662 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRF 662 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCc
Confidence 5544433322 122455555555554432 234677788888777763 55677777777788888888
Q ss_pred hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCccHHHHHHHHHHHHhcCCchhhhHHHH
Q 012577 351 EKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ-VGYVARFKQFQTLVQAYINAKTPAYGIRDRM 429 (460)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m 429 (460)
.+|..+|.+..+... -...+|-.+.++|...|++-.|+++|+...+ ..-..+..+.+.|.+++.+.|..-.+.--..
T Consensus 663 ~~A~dIFsqVrEa~~--~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 663 SEARDIFSQVREATS--DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALL 740 (1018)
T ss_pred hHHHHHHHHHHHHHh--hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 888888888765432 2234777788888888888888888886654 3334567778888888888887433333334
Q ss_pred HhCCCCcCHHH
Q 012577 430 RADNVFPNKAL 440 (460)
Q Consensus 430 ~~~~~~p~~~~ 440 (460)
.+....|...+
T Consensus 741 ~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 741 KARHLAPSNTS 751 (1018)
T ss_pred HHHHhCCccch
Confidence 44445555544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.3e-14 Score=130.96 Aligned_cols=400 Identities=12% Similarity=0.028 Sum_probs=276.6
Q ss_pred cccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCC----CchhHHHHHHHHHHcCCCHHHH
Q 012577 37 RRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESF----RGEVVYRTLLANCVAGNNVKKA 112 (460)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a 112 (460)
...+..++.++...-..+ +.++...+.+.+.|...|+++.+..+.+.+.... --...|-.+.++|-..|++++|
T Consensus 249 ~~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA 326 (1018)
T KOG2002|consen 249 SDSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKA 326 (1018)
T ss_pred hHHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHH
Confidence 355667888887766655 4567789999999999999999999988876542 1245688999999999999999
Q ss_pred HHHHHHHHhCCCCCCh--hhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC----ChhHHHHHH
Q 012577 113 EEVFNRMKDKGFPVTS--FACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSN----DLTGMDQVV 185 (460)
Q Consensus 113 ~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~ 185 (460)
...|.+..+.. |+. ..+.-+...+...|+ ..+...|+...... +-+..+..+|...|...+ ..+.|..++
T Consensus 327 ~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l 403 (1018)
T KOG2002|consen 327 FKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVL 403 (1018)
T ss_pred HHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHH
Confidence 99998887763 444 344556678888898 89999999888773 445667777777777765 567788888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccC
Q 012577 186 EAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEME----GDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESN 261 (460)
Q Consensus 186 ~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 261 (460)
.+..+.- +-|...|-.+...+-....+ .++.+|..+. ..+..+.+...|.+...+...|+++.|...|+.....
T Consensus 404 ~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 404 GKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 7777654 56788888888777655444 4466665543 4455567789999999999999999999999865432
Q ss_pred ------CCH------HHHHHHHHHHHccCCHHHHHHHHHH----------------------------------HHhccc
Q 012577 262 ------PWL------DVCMAAIEAWGKLNKVEEAEAVFKR----------------------------------MSKTWK 295 (460)
Q Consensus 262 ------~~~------~~~~~li~~~~~~~~~~~a~~~~~~----------------------------------m~~~~~ 295 (460)
++. .+--.+...+-..++.+.|.+.|.. ....+-
T Consensus 482 ~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~ 561 (1018)
T KOG2002|consen 482 LLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS 561 (1018)
T ss_pred hhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc
Confidence 222 1111222333333444444444444 443321
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHc------------CCChhhHHHHHHHHHH
Q 012577 296 KLSTKHYTALLKVYADHKMLSKGKDLVKQMAESG-CHIGPLAWDALVKLHVE------------GGEVEKADSILLKAQQ 362 (460)
Q Consensus 296 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~------------~~~~~~a~~~~~~~~~ 362 (460)
.++..++.+...+.....+..|.+-|......- ..+|..+.-+|...|.. .+..++|+++|.++++
T Consensus 562 -~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~ 640 (1018)
T KOG2002|consen 562 -SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR 640 (1018)
T ss_pred -CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh
Confidence 244455555556666666666666555444321 12466666666665542 2346778888888776
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhH-HHHHhCCCCcCHH
Q 012577 363 QNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIR-DRMRADNVFPNKA 439 (460)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~-~~m~~~~~~p~~~ 439 (460)
.+ +-|...-|.+.-.++..|++.+|..+|.+.++.. .....+|-.+..+|...|. .|..+| .-|+...-.-+..
T Consensus 641 ~d--pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~ 717 (1018)
T KOG2002|consen 641 ND--PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSE 717 (1018)
T ss_pred cC--cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 54 3466667888889999999999999999999976 3456689999999999999 455555 5566667666777
Q ss_pred HHHHHHHH
Q 012577 440 LAAQVAQV 447 (460)
Q Consensus 440 ~~~~l~~~ 447 (460)
....|.++
T Consensus 718 vl~~Lara 725 (1018)
T KOG2002|consen 718 VLHYLARA 725 (1018)
T ss_pred HHHHHHHH
Confidence 77777433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.1e-13 Score=131.94 Aligned_cols=350 Identities=11% Similarity=0.003 Sum_probs=240.2
Q ss_pred ccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC----chhHHHHHHHHHHcCCC---HH
Q 012577 38 RMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR----GEVVYRTLLANCVAGNN---VK 110 (460)
Q Consensus 38 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~---~~ 110 (460)
+...++...++.+-+.. +-+....-.+.-...+.|+.++|.++|+..-...+ +....+-++..|.+.+. ..
T Consensus 356 ~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 356 RNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred CchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 45555555555555542 23444444455555667777777777777544211 22334455555555544 22
Q ss_pred HHHHH----------------------HHHHHhC-CC-CC--ChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHH
Q 012577 111 KAEEV----------------------FNRMKDK-GF-PV--TSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFS 164 (460)
Q Consensus 111 ~a~~~----------------------~~~m~~~-g~-~~--~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 164 (460)
++..+ ++..... +. ++ +...|..+..++...+..+|...+...... .|+...
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~--~Pd~~~ 511 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQR--QPDAWQ 511 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHh--CCchHH
Confidence 22222 2222211 11 33 566677777777664337788877777665 466554
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE 244 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (460)
...+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...+++..+.+.. +...+..+......
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~ 588 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHh
Confidence 444455557899999999999987654 455566777778888999999999999998876522 33333344445556
Q ss_pred cCChhHHHHHHHHhcc-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012577 245 LGKADQVARIWKLCES-NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVK 323 (460)
Q Consensus 245 ~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 323 (460)
.|++++|...++.... .|+...+..+...+.+.|++++|...++......+. +...++.+...+...|++++|...++
T Consensus 589 ~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 589 PGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6999999999987765 677778888999999999999999999999887554 66788888889999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 324 QMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMF-SSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 324 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
...+.. +-+...+..+..++...|++++|...++++.+.. |+. .+.........+..+++.|.+-+++....
T Consensus 668 ~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~---P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 668 RAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI---DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 998863 5577888899999999999999999999987654 432 34445555666677777777777776654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.1e-13 Score=121.24 Aligned_cols=280 Identities=13% Similarity=0.107 Sum_probs=209.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCCChhhhHHH-HHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHH--HHHHHHhhcCChhHH
Q 012577 106 GNNVKKAEEVFNRMKDKGFPVTSFACNQL-LILYKRLDK-KKVADVLLLMEKENVKLTQFSYK--ILIDIKGQSNDLTGM 181 (460)
Q Consensus 106 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-l~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a 181 (460)
.|++++|.+.+....+.. +.+..+..+ ..+..+.|+ +.+.+.+.++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 688988888777765542 122222222 223355565 8888888888764 55554333 336788899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChhHHHHH
Q 012577 182 DQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHR-------WTCRLLLPLYAELGKADQVARI 254 (460)
Q Consensus 182 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~ 254 (460)
.+.++++.+.. +-+......+...|.+.|++++|..++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998876 556788889999999999999999999999987665322 2333444444455566777777
Q ss_pred HHHhcc--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 012577 255 WKLCES--NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHI 332 (460)
Q Consensus 255 ~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 332 (460)
|+.+.. ..+......+...+...|+.++|.+++++..+. .|+... .++.+....++.+++.+..+...+. .+-
T Consensus 252 w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~-~P~ 326 (398)
T PRK10747 252 WKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ-HGD 326 (398)
T ss_pred HHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh-CCC
Confidence 777643 346667888899999999999999999988874 344422 2344445668999999999998876 356
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 333 GPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
|+..+..+...|.+.+++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++...
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~---~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ---RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7778889999999999999999999998764 58888888999999999999999999998764
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4e-12 Score=119.02 Aligned_cols=362 Identities=12% Similarity=0.070 Sum_probs=272.4
Q ss_pred HHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCC-CchhHHHHHHHHHHcCCCH
Q 012577 31 MANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESF-RGEVVYRTLLANCVAGNNV 109 (460)
Q Consensus 31 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~ 109 (460)
...+.-+|++++|.+++.++.+.. |.....|..|...|-..|+.+++...+-...... .|...|-.+.....+.|.+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH
Confidence 333555699999999999999886 6678899999999999999999999888766653 4678899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhhcCChhHHHHH
Q 012577 110 KKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQF----SYKILIDIKGQSNDLTGMDQV 184 (460)
Q Consensus 110 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~ 184 (460)
++|.-+|.+.++.. +++....---...|.+.|+ ..|.+-|.++....-+.|.. .--..++.+...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999985 4455555556678888999 89999999988874222222 223346677788888999999
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC---------------------------CHHHHH
Q 012577 185 VEAMKSE-GIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKE---------------------------HRWTCR 236 (460)
Q Consensus 185 ~~~m~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------~~~~~~ 236 (460)
++..... +-..+...+++++..+.+..+++.|......+......+ +..+ -
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 9887763 224566778899999999999999999888877622222 2222 1
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcc-----CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHh
Q 012577 237 LLLPLYAELGKADQVARIWKLCES-----NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYAD 311 (460)
Q Consensus 237 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 311 (460)
.++-++.+.+..+....+...+.. ..++..|.-+..+|...|++.+|+.+|..+......-+...|-.+..+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 233344444444444444433322 124557888999999999999999999999987665577889999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH-------hCCCCcCHHHHHHHHHHHHhcC
Q 012577 312 HKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQ-------QNKFKPMFSSYMLIMDQYAKRG 384 (460)
Q Consensus 312 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g 384 (460)
.|.+++|.+.|+..+... +.+...-.+|...+.+.|+.++|.++++.+.. .....|+...-......+.+.|
T Consensus 462 l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 999999999999998863 45666777788889999999999999988542 2234455555556667788888
Q ss_pred CHHHHHHHHHHHH
Q 012577 385 DIHSTEKIFHRMR 397 (460)
Q Consensus 385 ~~~~a~~~~~~m~ 397 (460)
+.++=+.+-..|.
T Consensus 541 k~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 541 KREEFINTASTLV 553 (895)
T ss_pred hHHHHHHHHHHHH
Confidence 8887666655554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-12 Score=120.05 Aligned_cols=281 Identities=9% Similarity=0.002 Sum_probs=215.1
Q ss_pred hhCHHHHHHHHHhcccCCCchhHHHHH-HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhH--HHHHHHHhcCc-hHHHH
Q 012577 73 LRGLQKAESYIQKIPESFRGEVVYRTL-LANCVAGNNVKKAEEVFNRMKDKGFPVTSFACN--QLLILYKRLDK-KKVAD 148 (460)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~--~ll~~~~~~~~-~~a~~ 148 (460)
.|+++.|++.+...+...+++..+..+ .....+.|+++.|.+.+.++.+. .|+..... .....+...|+ +.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 599999999998876643334443333 34457899999999999999875 45554333 23456777777 99999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhCCChHHHHHHHH
Q 012577 149 VLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDS-------STQAILAKHYVSGGRKEKAEAMLK 221 (460)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~ 221 (460)
.++.+.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998875 557788889999999999999999999999988644322 233344444445555666777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHH
Q 012577 222 EMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESN-PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTK 300 (460)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 300 (460)
.+.+. .+.++.....+...+...|+.++|..+++..... ++.. ..++.+....++.+++.+..+...+..+. |..
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~ 329 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHGD-TPL 329 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCCC-CHH
Confidence 66443 2346778888999999999999999999876653 3442 22344445669999999999999987554 677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 301 HYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 301 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
.+..+...+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7889999999999999999999999985 69999999999999999999999999988754
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-15 Score=131.53 Aligned_cols=191 Identities=19% Similarity=0.182 Sum_probs=63.2
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHH
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDN-LKEHRWTCRLLLPLYA 243 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 243 (460)
+..++.. ...+++++|.++++...+. .++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.
T Consensus 81 ~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~ 157 (280)
T PF13429_consen 81 YERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE 157 (280)
T ss_dssp ----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH
T ss_pred ccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 3334433 3455555555555444332 2334444444455555555555555555544321 1233344444444444
Q ss_pred hcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 012577 244 ELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDL 321 (460)
Q Consensus 244 ~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 321 (460)
+.|+.++|...++.... .| +....+.++..+...|+.+++.++++...+.. +.|+..+..+..+|...|+.++|...
T Consensus 158 ~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~ 236 (280)
T PF13429_consen 158 QLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEY 236 (280)
T ss_dssp HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccc
Confidence 45555555444444333 33 23344445555555555555555555444432 22344455555555555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHH
Q 012577 322 VKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKA 360 (460)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 360 (460)
++...+.. +.|+.+...+..++...|+.++|.++..++
T Consensus 237 ~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 237 LEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred cccccccc-cccccccccccccccccccccccccccccc
Confidence 55555542 335555555555555555555555555444
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-12 Score=120.90 Aligned_cols=288 Identities=13% Similarity=0.065 Sum_probs=193.6
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCChhhhH-HHHHHHHhcCc-hHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhhcCChh
Q 012577 104 VAGNNVKKAEEVFNRMKDKGFPVTSFACN-QLLILYKRLDK-KKVADVLLLMEKENVKLTQ--FSYKILIDIKGQSNDLT 179 (460)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~ 179 (460)
...|+++.|.+.+.+..+. .|++..+- ....++...|+ +.+.+.+....+. .|+. ...-.....+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 3467788888777776654 23333222 22334555566 7777777776654 2333 23333577788889999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---Hh----cCChhHHH
Q 012577 180 GMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLY---AE----LGKADQVA 252 (460)
Q Consensus 180 ~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~~~~~~a~ 252 (460)
.|.+.++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.+..+.......-..++ .. ....+...
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999988875 4567778888888999999999999999888876543222211111111 22 22233344
Q ss_pred HHHHHhcc--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 253 RIWKLCES--NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKH-YTALLKVYADHKMLSKGKDLVKQMAESG 329 (460)
Q Consensus 253 ~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~ 329 (460)
..++.... ..+...+..+...+...|+.++|.+++++..+..+...... ...........++.+.+.+.++...+.
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~- 328 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN- 328 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-
Confidence 44444322 13667788888999999999999999999988644322111 122222334457788888888888775
Q ss_pred CCCCH--HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 330 CHIGP--LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 330 ~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
.+-|+ ....++...|.+.|++++|.+.|+..... ...|+...+..+...+.+.|+.++|.++|++...
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455 67778999999999999999999953222 2458888888999999999999999999998754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-10 Score=103.94 Aligned_cols=404 Identities=9% Similarity=0.027 Sum_probs=251.5
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCC-CChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-
Q 012577 14 KYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLD-FIERDYASCLDLIAKLRGLQKAESYIQKIPESFR- 91 (460)
Q Consensus 14 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 91 (460)
.+...|...+.+....-...+-..|..--+..+...+..-+--. ....++..-...|.+.+.++-|+.+|......+|
T Consensus 469 ~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~ 548 (913)
T KOG0495|consen 469 ELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC 548 (913)
T ss_pred HHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc
Confidence 33344555666655555555555555555555555444433111 1234556666666666677777777666555544
Q ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012577 92 GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILID 170 (460)
Q Consensus 92 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~ 170 (460)
+...|......--..|..++...+|++.... ++-....|-....-+...|+ ..|..++....+.. +-+...|-.-+.
T Consensus 549 k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavK 626 (913)
T KOG0495|consen 549 KKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVK 626 (913)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3445655555555566677777777776665 22233334344445555566 66666666666553 335556666666
Q ss_pred HHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 012577 171 IKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQ 250 (460)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 250 (460)
.-..+..++.|..+|.+.... .|+...|.--++.-.-.++.++|.+++++.++.-. --...|..+...+.+.++.+.
T Consensus 627 le~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp-~f~Kl~lmlGQi~e~~~~ie~ 703 (913)
T KOG0495|consen 627 LEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFP-DFHKLWLMLGQIEEQMENIEM 703 (913)
T ss_pred HhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC-chHHHHHHHhHHHHHHHHHHH
Confidence 677777777777777766654 45555555555555556667777777776665421 122345556666666777777
Q ss_pred HHHHHHH-hccCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 251 VARIWKL-CESNP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAES 328 (460)
Q Consensus 251 a~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 328 (460)
|...|.. .+.-| .+..|..+...--+.|.+-.|..+++..+-.++. +...|-..|..-.+.|+.+.|..++.+..+.
T Consensus 704 aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 704 AREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7666553 22333 3445666666666667777777777777766554 6667777777777777777777777776665
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 012577 329 GCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQF 408 (460)
Q Consensus 329 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 408 (460)
++.+...|..-|....+.++-......+.+. .-|....-.+...+....+++.|.+.|.+..+.+ +.+-.+|
T Consensus 783 -cp~sg~LWaEaI~le~~~~rkTks~DALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~w 854 (913)
T KOG0495|consen 783 -CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAW 854 (913)
T ss_pred -CCccchhHHHHHHhccCcccchHHHHHHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHH
Confidence 5666667777777666666655554444332 2344555667777888889999999999999886 6667899
Q ss_pred HHHHHHHHhcCC--chhhhHHHHHh
Q 012577 409 QTLVQAYINAKT--PAYGIRDRMRA 431 (460)
Q Consensus 409 ~~l~~~~~~~g~--~~~~~~~~m~~ 431 (460)
.-+..-+..+|. ....++.....
T Consensus 855 a~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 855 AWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 999999999996 44555555544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-11 Score=105.80 Aligned_cols=289 Identities=13% Similarity=0.074 Sum_probs=215.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHH
Q 012577 106 GNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQV 184 (460)
Q Consensus 106 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 184 (460)
.|+|.+|+++..+-.+.+-.| ...|..-..+.-+.|+ +.+-.++.+..+..-.++...+-+........||++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 689999999988877776433 2333344445556666 78888888887763366777777888889999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHH
Q 012577 185 VEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHR-------WTCRLLLPLYAELGKADQVARIWKL 257 (460)
Q Consensus 185 ~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (460)
++++.+.+ +-+.........+|.+.|++.....++..+.+.+.--++ .+|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99998876 567888899999999999999999999999998876543 4566666666666666666667776
Q ss_pred hcc--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 012577 258 CES--NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPL 335 (460)
Q Consensus 258 ~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 335 (460)
... ..++..-.+++.-+.++|+.++|.++..+..+.+..|+ -...-.+.+-++.+.-.+..+.-.+. .+-++.
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~ 329 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPL 329 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChh
Confidence 544 33455566777888888888999888888888776555 22223455667777777777666554 345667
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 012577 336 AWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVAR 404 (460)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 404 (460)
.+..|...|.+.+.+.+|.+.|+...+ ..|+..+|+.+.+++.+.|+..+|.+..++....-.+|+
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 888888888888889898888887654 468888888888888888988888888887765433443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.7e-11 Score=102.53 Aligned_cols=368 Identities=12% Similarity=0.071 Sum_probs=246.1
Q ss_pred ChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHH--HH
Q 012577 59 IERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQ--LL 135 (460)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~--ll 135 (460)
|...+-.....+-+.|....|...|.......| .-..|-.|..... +.+.+. .... |.+.|...+.. +.
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit---~~e~~~----~l~~-~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT---DIEILS----ILVV-GLPSDMHWMKKFFLK 234 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc---hHHHHH----HHHh-cCcccchHHHHHHHH
Confidence 444444444556677888888888888765423 3344444443322 222222 2221 22222222222 22
Q ss_pred HHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhCCC
Q 012577 136 ILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGI--EPDSSTQAILAKHYVSGGR 212 (460)
Q Consensus 136 ~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~l~~~~~~~~~ 212 (460)
.++..... +++.+-.+.....|.+-+...-+....+.....|+++|+.+|+++.+... --|..+|+.++- .+..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhh
Confidence 24444444 67777777778888766666555556667778899999999999987731 125677777763 33332
Q ss_pred hHHHHHHHHHHH--hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHH
Q 012577 213 KEKAEAMLKEME--GDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFK 288 (460)
Q Consensus 213 ~~~a~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~ 288 (460)
-. +.++.+-. -....| .|...+.+-|+-.++.++|...|++..+ +| ....|+.+.+-|....+...|.+.++
T Consensus 313 sk--Ls~LA~~v~~idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 313 SK--LSYLAQNVSNIDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HH--HHHHHHHHHHhccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 21 22222211 122333 5777888889999999999999998766 55 45578888899999999999999999
Q ss_pred HHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCc
Q 012577 289 RMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKP 368 (460)
Q Consensus 289 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 368 (460)
..++-++. |-..|-.|.++|.-.+.+.-|+-+|++..+.. +.|+..|..|..+|.+.++.++|++.|.....-.. .
T Consensus 389 rAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d--t 464 (559)
T KOG1155|consen 389 RAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD--T 464 (559)
T ss_pred HHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc--c
Confidence 99987655 88899999999999999999999999998863 56889999999999999999999999998876543 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cC-CCc-cHHHHHHHHHHHHhcCCchhhhHHHHHhCCCCcCHHHHH
Q 012577 369 MFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ----VG-YVA-RFKQFQTLVQAYINAKTPAYGIRDRMRADNVFPNKALAA 442 (460)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~-~~~-~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~ 442 (460)
+...+..|.+.|-+.++.++|...|++-.+ .| +.| .....-.|..-+.+.++...+-...+......+...--+
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak 544 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAK 544 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHH
Confidence 456888999999999999999998887665 23 233 222333355566677775554444444443366655555
Q ss_pred HH
Q 012577 443 QV 444 (460)
Q Consensus 443 ~l 444 (460)
.|
T Consensus 545 ~L 546 (559)
T KOG1155|consen 545 AL 546 (559)
T ss_pred HH
Confidence 55
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-13 Score=122.98 Aligned_cols=279 Identities=11% Similarity=0.010 Sum_probs=146.3
Q ss_pred CHHHHHHHHHhcccCCCch-hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC--CCChhhhHHHHHHHHhcCchHHHHHH-
Q 012577 75 GLQKAESYIQKIPESFRGE-VVYRTLLANCVAGNNVKKAEEVFNRMKDKGF--PVTSFACNQLLILYKRLDKKKVADVL- 150 (460)
Q Consensus 75 ~~~~a~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~~~a~~~~- 150 (460)
+..+|...|++++...++. .+...+..+|...+++++|.++|+...+... .-+...|.+.+-.+. ++.+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~v~Ls~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hhHHHHHHH
Confidence 4567888888877665544 4445567788888888888888888776521 113445555443222 22222222
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC
Q 012577 151 LLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKE 230 (460)
Q Consensus 151 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 230 (460)
+.+.+.. +-.+.+|.++.++|.-.++.+.|++.|++..+.. +-...+|+.+.+-+.....+|+|...|+..+.-...
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r- 487 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR- 487 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence 2222221 4455677777777777777777777777776653 225667777776677777777777777666543211
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHH
Q 012577 231 HRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKV 308 (460)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 308 (460)
+-..|-.+...|.+.++++.|+-.|+.... +| +.+....+...+-+.|+.++|++++++....+.. |+..--..+..
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~i 566 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASI 566 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHH
Confidence 112233344445555555555555444333 23 2333334444444445555555555544443333 33333333444
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 012577 309 YADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQ 361 (460)
Q Consensus 309 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 361 (460)
+...+++++|+..++++++. ++-+...|..+...|-+.|+.+.|..-|.-+.
T Consensus 567 l~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 44444555555555554443 22233444444444545555555544444443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.1e-13 Score=120.57 Aligned_cols=286 Identities=10% Similarity=0.030 Sum_probs=222.2
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEG--IEPDSSTQAILAKHYVSGGRKEKAEAMLK 221 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 221 (460)
.+|...|..+... +.-+..+...+..+|...+++++|.++|+.+.+.. ...+..+|.+.+-.+-+ +-++.++.
T Consensus 336 ~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~La 410 (638)
T KOG1126|consen 336 REALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLA 410 (638)
T ss_pred HHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHH
Confidence 6788888885554 23344666778899999999999999999998762 12357788888754432 22333333
Q ss_pred -HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcC
Q 012577 222 -EMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLS 298 (460)
Q Consensus 222 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 298 (460)
++.+.. +-.+.+|.++..+|.-.++.+.|++.|++..+ +| ...+|+.+..-+.....+|.|...|+..+...++ +
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-h 488 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-H 488 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-h
Confidence 333332 33568999999999999999999999998776 55 7789999999999999999999999998875333 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 012577 299 TKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMD 378 (460)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (460)
-..|..+...|.+.++++.|.-.|+.+.+-+ +-+......+...+.+.|+.++|+++++++...++..| ..--..+.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~--l~~~~~~~ 565 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP--LCKYHRAS 565 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc--hhHHHHHH
Confidence 4455567788999999999999999999864 45677788888889999999999999999987665444 23233455
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCchhhhHHHHHhCCCCcCHHH
Q 012577 379 QYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGIRDRMRADNVFPNKAL 440 (460)
Q Consensus 379 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~ 440 (460)
.+...+++++|...++++++. ++-+..+|-.+.+.|.+.|...+++...-.+..+.|...-
T Consensus 566 il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 677889999999999999987 4667888999999999999988888877777777776543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8e-11 Score=102.44 Aligned_cols=315 Identities=13% Similarity=0.066 Sum_probs=211.7
Q ss_pred CchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHH--HHH
Q 012577 91 RGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSY--KIL 168 (460)
Q Consensus 91 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l 168 (460)
.|...+-.....+.+.|..+.|.+.|...... -+..|.+.+....-..+.+ +...+.. |.+.|.... -.+
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e---~~~~l~~-~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIE---ILSILVV-GLPSDMHWMKKFFL 233 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHH---HHHHHHh-cCcccchHHHHHHH
Confidence 34444444444566778888888888877654 2334444443332222211 1222221 112222111 123
Q ss_pred HHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcC
Q 012577 169 IDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLK--EHRWTCRLLLPLYAELG 246 (460)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 246 (460)
..++-...+.+++.+-.+.....|++.+...-+....+.....++|+|+.+|+++.++++- -|..+|+.++-.-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 4566666688888888888888887666555555555666778889999999988877432 24566666654332222
Q ss_pred Chh-HHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012577 247 KAD-QVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQM 325 (460)
Q Consensus 247 ~~~-~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 325 (460)
++. .|..+++ + .+--+.|+..+.+-|+-.++.++|...|++.++.++. ....|+.+..-|....+...|.+-++.+
T Consensus 314 kLs~LA~~v~~-i-dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 KLSYLAQNVSN-I-DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHHH-h-ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 211 1111111 1 1234456777777888888888999999988887654 5677888888888888889999999988
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 012577 326 AESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARF 405 (460)
Q Consensus 326 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 405 (460)
++-. +-|-..|-.|.++|.-.+.+.-|+-+|+++.+-. +-|...|.+|..+|.+.++.++|++.|++....| ..+.
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~ 466 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK--PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEG 466 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccch
Confidence 8863 6688888889999998888888999888886533 3467888999999999999999999999888877 5566
Q ss_pred HHHHHHHHHHHhcCC
Q 012577 406 KQFQTLVQAYINAKT 420 (460)
Q Consensus 406 ~~~~~l~~~~~~~g~ 420 (460)
..+..|.+.|-+.++
T Consensus 467 ~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 467 SALVRLAKLYEELKD 481 (559)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888888888887
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.8e-15 Score=128.63 Aligned_cols=248 Identities=15% Similarity=0.118 Sum_probs=95.0
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 012577 167 ILIDIKGQSNDLTGMDQVVEAMKSEG-IEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAEL 245 (460)
Q Consensus 167 ~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 245 (460)
.+...+.+.|++++|.+++++..... .+.|...|..+...+...++++.|...++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44666777777888877775544332 1334455555666666677777787777777765543 44455566655 577
Q ss_pred CChhHHHHHHHHhcc-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc-cCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012577 246 GKADQVARIWKLCES-NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTW-KKLSTKHYTALLKVYADHKMLSKGKDLVK 323 (460)
Q Consensus 246 ~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 323 (460)
+++++|.++++..-. .++...+...+..+.+.++++++.++++.+.... ..++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777654332 4455556666777777778888777777765432 23466667777777778888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 012577 324 QMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVA 403 (460)
Q Consensus 324 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 403 (460)
+..+.. |.|......++..+...|+.+++.+++....+.. ..|...+..+..++...|+.++|..+|++..+.. +.
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 877763 3356777777777777788877777777765543 2333466777777888888888888888877764 56
Q ss_pred cHHHHHHHHHHHHhcCC
Q 012577 404 RFKQFQTLVQAYINAKT 420 (460)
Q Consensus 404 ~~~~~~~l~~~~~~~g~ 420 (460)
|+.+...+..++...|+
T Consensus 247 d~~~~~~~a~~l~~~g~ 263 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGR 263 (280)
T ss_dssp -HHHHHHHHHHHT----
T ss_pred ccccccccccccccccc
Confidence 77777777777777777
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.5e-12 Score=115.56 Aligned_cols=283 Identities=11% Similarity=0.012 Sum_probs=116.7
Q ss_pred hhCHHHHHHHHHhcccCCCchhH-HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChh--hhHHHHHHHHhcCc-hHHHH
Q 012577 73 LRGLQKAESYIQKIPESFRGEVV-YRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSF--ACNQLLILYKRLDK-KKVAD 148 (460)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~ll~~~~~~~~-~~a~~ 148 (460)
.|+++.|.+.+.+..+..|+... +-....+..+.|+++.|.+.+.+..+.. |+.. ..-.....+...|+ +.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 35555555555544443333222 2222334444555555555555544332 2221 11112333344444 55555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---HhCCChHHHHHHHHHHH
Q 012577 149 VLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQA-ILAKHY---VSGGRKEKAEAMLKEME 224 (460)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~~~ 224 (460)
.++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.++. +...+. .-..++ ...+..+++.+.+..+.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 555555443 233444445555555555555555555555544422 222221 111111 21122222222333333
Q ss_pred hCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCCHHH---HHHHHHHHHccCCHHHHHHHHHHHHhcccCc
Q 012577 225 GDNLK---EHRWTCRLLLPLYAELGKADQVARIWKLCES-NPWLDV---CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKL 297 (460)
Q Consensus 225 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 297 (460)
+.... .+...+..+...+...|+.++|.+.++...+ .|+... ...........++.+.+.+.++...+..+.
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~- 331 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD- 331 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-
Confidence 22111 1344444455555555555555555544433 333221 011111112234444455555444443221
Q ss_pred CH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHH
Q 012577 298 ST--KHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKA 360 (460)
Q Consensus 298 ~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 360 (460)
|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22 3334445555555555555555553222223445544555555555555555555555543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.7e-11 Score=113.64 Aligned_cols=351 Identities=12% Similarity=0.057 Sum_probs=262.7
Q ss_pred HHHHHHHhhCHHHHHHHHHhcccC-CCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-
Q 012577 66 CLDLIAKLRGLQKAESYIQKIPES-FRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK- 143 (460)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~- 143 (460)
..+.+...|++++|.+++.++.+. +.....|.+|...|-+.|+.+++...+-..-..+ +-|...|..+-....+.|.
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 344445569999999999998776 4467899999999999999999998876655543 4477888888888899998
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhCCChHHHHHH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQ----AILAKHYVSGGRKEKAEAM 219 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~----~~l~~~~~~~~~~~~a~~~ 219 (460)
..|.-.|.+..+.. +++...+---+..|-+.|+...|+..|.++.....+.|..-. -..++.+...++.+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999885 566666666788899999999999999999987422232222 3345667778888999999
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc---C----------------------CCHHHH----HH
Q 012577 220 LKEMEGD-NLKEHRWTCRLLLPLYAELGKADQVARIWKLCES---N----------------------PWLDVC----MA 269 (460)
Q Consensus 220 ~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~----------------------~~~~~~----~~ 269 (460)
++..... +-..+...++.++..+.+...++.+......... . |+..+| .-
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 9887762 2223445778888999999999988776644322 0 111111 12
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcc--cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 012577 270 AIEAWGKLNKVEEAEAVFKRMSKTW--KKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG 347 (460)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 347 (460)
++-++.+.+..+....+.....+.. +.-+...|.-+..+|...|++.+|+.+|..+.....--+...|-.+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 3334445555555555555555554 33355678889999999999999999999999876556788999999999999
Q ss_pred CChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------HcCCCccHHHHHHHHHHHHhcC
Q 012577 348 GEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMR--------QVGYVARFKQFQTLVQAYINAK 419 (460)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~--------~~~~~~~~~~~~~l~~~~~~~g 419 (460)
|..++|.+.|+.++...+...| .--+|...+.+.|+.++|.+++..+. ..+..|+....-...+.+.+.|
T Consensus 463 ~e~e~A~e~y~kvl~~~p~~~D--~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAPDNLD--ARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred hhHHHHHHHHHHHHhcCCCchh--hhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 9999999999999886654444 44567778899999999999999854 3446677777777777888888
Q ss_pred C
Q 012577 420 T 420 (460)
Q Consensus 420 ~ 420 (460)
+
T Consensus 541 k 541 (895)
T KOG2076|consen 541 K 541 (895)
T ss_pred h
Confidence 7
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.1e-12 Score=103.28 Aligned_cols=218 Identities=19% Similarity=0.157 Sum_probs=130.5
Q ss_pred cccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCc------hhHHHHHHHHHHcCCCHH
Q 012577 37 RRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRG------EVVYRTLLANCVAGNNVK 110 (460)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~ 110 (460)
..+.++|+++|-+|.+.. +-+.++.-++.+.|.+.|..+.|+++.+.+..+ || ......|..-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 456788888888887754 445566777888888888888888888887664 33 233455667788888888
Q ss_pred HHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhhcCChhHHHHHH
Q 012577 111 KAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQ----FSYKILIDIKGQSNDLTGMDQVV 185 (460)
Q Consensus 111 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~ 185 (460)
.|.++|..+.+.|. --......|+..|-...+ ++|.++-.++.+.+-.+.. ..|.-|...+....+.+.|..++
T Consensus 125 RAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 88888888877542 133445555555655555 5566555555554322221 23444555555555666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhc
Q 012577 186 EAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCE 259 (460)
Q Consensus 186 ~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 259 (460)
.+..+.+ +..+..--.+.+.....|+++.|.+.++...+.+..--+.+...|..+|.+.|+.++....+.++.
T Consensus 204 ~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 204 KKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6555443 223333334445555566666666666666555544334445555555555555555555554433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.5e-11 Score=104.12 Aligned_cols=388 Identities=11% Similarity=-0.007 Sum_probs=181.8
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHhcccCCCC-hhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCc-hhHHHHHHHHHH
Q 012577 27 IALAMANLRTRRMYGKALQLSEWLETNKKLDFI-ERDYASCLDLIAKLRGLQKAESYIQKIPESFRG-EVVYRTLLANCV 104 (460)
Q Consensus 27 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~ 104 (460)
+...-..+.+.|.+++|++.|.+..... |+ +--|+....+|...|+|+++.+--.+..+..|+ +..+.--..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 3444455778899999999999998753 55 666888999999999999988877776665454 344555555666
Q ss_pred cCCCHHHHHHHHHHHHh-CCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhh-------
Q 012577 105 AGNNVKKAEEVFNRMKD-KGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKE--NVKLTQFSYKILIDIKGQ------- 174 (460)
Q Consensus 105 ~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~------- 174 (460)
..|++++|+.=..-..- .|+. +..+--.+=+.+-+.+..++.+-+. .. .+-|+....++....+..
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk~a~~ka~e~~k---~nr~p~lPS~~fi~syf~sF~~~~~~~~~ 270 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKKQAMKKAKEKLK---ENRPPVLPSATFIASYFGSFHADPKPLFD 270 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHHHHHHHHHHhhc---ccCCCCCCcHHHHHHHHhhcccccccccc
Confidence 66666665432111100 0000 0000000000111111111111111 00 111221111111111100
Q ss_pred ------------------cC---ChhHHHHHHHHHHhC-CCCC--C---------HHHHHHHHHHHHhCCChHHHHHHHH
Q 012577 175 ------------------SN---DLTGMDQVVEAMKSE-GIEP--D---------SSTQAILAKHYVSGGRKEKAEAMLK 221 (460)
Q Consensus 175 ------------------~~---~~~~a~~~~~~m~~~-g~~~--~---------~~~~~~l~~~~~~~~~~~~a~~~~~ 221 (460)
.+ .+..|...+.+-... -..+ + ..+...-...+.-.|+.-.|..-|+
T Consensus 271 ~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~ 350 (606)
T KOG0547|consen 271 NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFD 350 (606)
T ss_pred CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHH
Confidence 00 111222222111100 0001 1 1111111122333455555666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-C-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCH
Q 012577 222 EMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-N-PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLST 299 (460)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 299 (460)
..+.....++. .|--+..+|....+.++....|..... + .+..+|..-...+.-.+++++|..=|++.....+. +.
T Consensus 351 ~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~ 428 (606)
T KOG0547|consen 351 AAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NA 428 (606)
T ss_pred HHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hh
Confidence 55555444332 244455555556666665555555443 2 24444544455555555566666666655554332 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCC------CcCHHHH
Q 012577 300 KHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKF------KPMFSSY 373 (460)
Q Consensus 300 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~ 373 (460)
..|..+..+..+.+++++++..|++.++. ++.-+..|+.....+...++++.|.+.|+..++..+. .+.....
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence 44555555555555666666666665554 4445556666666666666666666666655543211 1111111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhH
Q 012577 374 MLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIR 426 (460)
Q Consensus 374 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~ 426 (460)
..++.. ...+++..|..++.+..+.+ +-....|.+|...-.+.|+ ++..+|
T Consensus 508 Ka~l~~-qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielF 560 (606)
T KOG0547|consen 508 KALLVL-QWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELF 560 (606)
T ss_pred hhHhhh-chhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 111111 12355666666666666554 3344555555555555555 344444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-11 Score=101.46 Aligned_cols=220 Identities=14% Similarity=0.076 Sum_probs=111.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhhcCChhHH
Q 012577 106 GNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLT---QFSYKILIDIKGQSNDLTGM 181 (460)
Q Consensus 106 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a 181 (460)
+.+.++|.++|-+|.+.. +-+..+.-+|.+.|.+.|. +.|..+.+.+.++.--+. ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 356777777777777642 2233444455566666666 777777766665311111 12233455566667777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHH
Q 012577 182 DQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHR----WTCRLLLPLYAELGKADQVARIWKL 257 (460)
Q Consensus 182 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (460)
+.+|..+.+.| ..-......|+..|-...+|++|+++-+++.+.+..+.. ..|.-+...+....+.+.|..++++
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 77777766644 344556666666777777777777776666665544332 1233333333334444444444443
Q ss_pred hcc-CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 258 CES-NPW-LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 258 ~~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 327 (460)
..+ +|. +..-..+.+.+...|+++.|.+.++...+.++.--+.+...|..+|...|+.++...++..+.+
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 322 221 1122233344444444444444444444443332333344444444444444444444444444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-11 Score=106.97 Aligned_cols=207 Identities=11% Similarity=0.070 Sum_probs=162.3
Q ss_pred HhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 012577 172 KGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQV 251 (460)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 251 (460)
....|++++|.+.|++.....-.-....||+ .-.+-..|+.++|+..|-++... +.-+..+...+.+.|....+..+|
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHH
Confidence 4457999999999999985432112222332 23466789999999999877543 223566777889999999999999
Q ss_pred HHHHHHhcc--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 252 ARIWKLCES--NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESG 329 (460)
Q Consensus 252 ~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 329 (460)
.+++....+ ..++....-|...|-+.|+-..|.+.+-+--.. ++.+..+...|...|....-+++++.+|+..--
T Consensus 578 ie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal-- 654 (840)
T KOG2003|consen 578 IELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-- 654 (840)
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--
Confidence 999988766 447778899999999999999999887655443 455888888899999999999999999998765
Q ss_pred CCCCHHHHHHHHHHHH-cCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 012577 330 CHIGPLAWDALVKLHV-EGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGD 385 (460)
Q Consensus 330 ~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (460)
+.|+..-|..++..|. +.|++.+|.+++.....+ ++-|......|++.+...|-
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CccchHHHHHHHHHhccccc
Confidence 6899999999888775 579999999999998765 45677788888888777663
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.9e-10 Score=97.94 Aligned_cols=366 Identities=11% Similarity=0.103 Sum_probs=263.6
Q ss_pred hcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHH
Q 012577 36 TRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEV 115 (460)
Q Consensus 36 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 115 (460)
.-|+...|.++|+.-.. +.|+...+.+.|+.=.+.+.++.|..+++...-.+|++.+|-.....=.+.|....|..+
T Consensus 153 ~LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HhcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34677778888854433 567888888888888888888888888888766668888888888777888888888888
Q ss_pred HHHHHhCCCCCChhhhHHHHHHHHhc----Cc-hHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhcCChhHHHHH----
Q 012577 116 FNRMKDKGFPVTSFACNQLLILYKRL----DK-KKVADVLLLMEKENVKLT--QFSYKILIDIKGQSNDLTGMDQV---- 184 (460)
Q Consensus 116 ~~~m~~~g~~~~~~~~~~ll~~~~~~----~~-~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~---- 184 (460)
|+...+. -.|...-..++.+++.. .. +.|.-+|+-..+. ++.+ ...|......--+.||.......
T Consensus 230 yerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 230 YERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 8877653 11333333344444332 22 6677777776665 2333 44555555555556665444333
Q ss_pred ----HHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHH---HhcCChhH
Q 012577 185 ----VEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHR-------WTCRLLLPLY---AELGKADQ 250 (460)
Q Consensus 185 ----~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~---~~~~~~~~ 250 (460)
|+.+...+ +.|-.+|--.++.--..|+.+...++|+..+.. ++|-. +.|--+=-++ ....+.+.
T Consensus 307 Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 307 RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34455444 667888888888888899999999999999876 44421 2222111122 34788999
Q ss_pred HHHHHHHhcc--CCCHHHHHHHHHH----HHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012577 251 VARIWKLCES--NPWLDVCMAAIEA----WGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQ 324 (460)
Q Consensus 251 a~~~~~~~~~--~~~~~~~~~li~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 324 (460)
+.++++.+.. +....|+.-+--. -.++.++..|.+++..... ..|-..+|...|..-.+.+.++.+..+++.
T Consensus 385 tr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 385 TRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999988766 3344455544433 3467889999999987764 567889999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 012577 325 MAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVAR 404 (460)
Q Consensus 325 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 404 (460)
.++.+ +-|..+|......-...|+.+.|..+|+.++.+..+......|.+.|..-...|.++.|..+++++++. .+.
T Consensus 463 fle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h 539 (677)
T KOG1915|consen 463 FLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQH 539 (677)
T ss_pred HHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--ccc
Confidence 99975 557889999888888999999999999998877655555677888888888999999999999999975 344
Q ss_pred HHHHHHHHHH
Q 012577 405 FKQFQTLVQA 414 (460)
Q Consensus 405 ~~~~~~l~~~ 414 (460)
..+|-++..-
T Consensus 540 ~kvWisFA~f 549 (677)
T KOG1915|consen 540 VKVWISFAKF 549 (677)
T ss_pred chHHHhHHHH
Confidence 5566665543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.7e-10 Score=99.23 Aligned_cols=416 Identities=11% Similarity=0.004 Sum_probs=297.6
Q ss_pred CCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccC-------CC
Q 012577 19 GNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPES-------FR 91 (460)
Q Consensus 19 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~ 91 (460)
+...+|.....+.+.+.-.+.++.|..+...-.- ...+.........++.+.++++.|..++...+.. ..
T Consensus 44 ~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~l---e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~ 120 (611)
T KOG1173|consen 44 GLTNDPADIYWLAQVLYLGRQYERAAHLITTYKL---EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEK 120 (611)
T ss_pred hccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcch
Confidence 5557888999999999999999998887754322 2346667777888899999999999999833110 00
Q ss_pred ch-------hHH-----H-----HH--HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHH---HHHHHhcC-------
Q 012577 92 GE-------VVY-----R-----TL--LANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQL---LILYKRLD------- 142 (460)
Q Consensus 92 ~~-------~~~-----~-----~l--l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l---l~~~~~~~------- 142 (460)
+. ..+ + ++ ...|....++++|...|.+.... |...|..+ +.+..-..
T Consensus 121 ~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll 196 (611)
T KOG1173|consen 121 DAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELL 196 (611)
T ss_pred hhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHH
Confidence 10 001 0 01 12345556677787777776654 33333222 21111110
Q ss_pred ----------c--hHHHHHHHHH----------------HHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCC
Q 012577 143 ----------K--KKVADVLLLM----------------EKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIE 194 (460)
Q Consensus 143 ----------~--~~a~~~~~~~----------------~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 194 (460)
. +....+|+.- .-.+..-+........+-+...+++.+..++++...+.. +
T Consensus 197 ~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-p 275 (611)
T KOG1173|consen 197 ESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-P 275 (611)
T ss_pred hcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-C
Confidence 0 1111122210 001223344455556667788999999999999998775 6
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCCHHHHHHHHH
Q 012577 195 PDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES--NPWLDVCMAAIE 272 (460)
Q Consensus 195 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~ 272 (460)
+....+..-|.++...|+..+-..+=.++.+..+ -.+.+|-++.--|...|+..+|.+.|.+... +.-...|-.+..
T Consensus 276 fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fgh 354 (611)
T KOG1173|consen 276 FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP-SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGH 354 (611)
T ss_pred CCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhH
Confidence 7777888888899999999888888888887643 3668899999889999999999999987655 334558999999
Q ss_pred HHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhh
Q 012577 273 AWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEK 352 (460)
Q Consensus 273 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 352 (460)
.|.-.|.-++|...+....+.-.. ....+--+.--|.+.++++.|.++|.+...- .|.|+...+-+.......+.+.+
T Consensus 355 sfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~ 432 (611)
T KOG1173|consen 355 SFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPE 432 (611)
T ss_pred HhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHH
Confidence 999999999999998877664211 2233444566788899999999999999876 46688888888888888899999
Q ss_pred HHHHHHHHHHhCC-C---Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCchhhhHH
Q 012577 353 ADSILLKAQQQNK-F---KP-MFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGIRD 427 (460)
Q Consensus 353 a~~~~~~~~~~~~-~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 427 (460)
|..+|+.....-. + .+ -..+++.|..+|.+.+.+++|+..+++..... +.+..++.++.-.|...|+...++-.
T Consensus 433 A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 433 ALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred HHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHH
Confidence 9999998763110 0 11 22467889999999999999999999999875 77899999999999999996666666
Q ss_pred HHHhCCCCcCHHHHHHHHH
Q 012577 428 RMRADNVFPNKALAAQVAQ 446 (460)
Q Consensus 428 ~m~~~~~~p~~~~~~~l~~ 446 (460)
-=++..+.|+..+...++.
T Consensus 512 fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 512 FHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHhcCCccHHHHHHHH
Confidence 6677789999987777743
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-09 Score=93.50 Aligned_cols=382 Identities=9% Similarity=0.028 Sum_probs=229.5
Q ss_pred cccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCch-hHHHHHHHHHHcCCCHHHHHHH
Q 012577 37 RRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGE-VVYRTLLANCVAGNNVKKAEEV 115 (460)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~ 115 (460)
++++..|..+|+...... ..+...+...+.+=.+++.++.|..+|+......|-+ ..|-..+..=-..|++..|.++
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 445556778888777654 2244456666777778899999999999877665544 4466666566667999999999
Q ss_pred HHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhC-CC
Q 012577 116 FNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSE-GI 193 (460)
Q Consensus 116 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~ 193 (460)
|++..+. .|+...|++.|..=.+.+. +.|..+++...-. .|++.+|--....-.+.|+...|.++|+...+. |-
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 9998875 7999999999998777777 8999999988764 699999988888888999999999999888764 20
Q ss_pred -CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHH---------HHhccCC
Q 012577 194 -EPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEH-RWTCRLLLPLYAELGKADQVARIW---------KLCESNP 262 (460)
Q Consensus 194 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~---------~~~~~~~ 262 (460)
..+...+.+....=.+...++.|.-+|+-.++.-++.. ...|......=-+.|+.....+.. +.+..+|
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 11223333333333455667777777776665422211 233444443333445544433322 1122233
Q ss_pred -CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHH--HHHHH--------HHHHHhcCCHHHHHHHHHHHHHcCCC
Q 012577 263 -WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTK--HYTAL--------LKVYADHKMLSKGKDLVKQMAESGCH 331 (460)
Q Consensus 263 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l--------i~~~~~~g~~~~a~~~~~~~~~~~~~ 331 (460)
+-.+|--.+..-...|+.+...++|+..... ++|-.. .|.-. +-.-....+.+.+.++++..++. ++
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cC
Confidence 4445555555555566666666666666654 333111 11111 11112345566666666666553 33
Q ss_pred CCHHHHHHHHHHHH----cCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH
Q 012577 332 IGPLAWDALVKLHV----EGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQ 407 (460)
Q Consensus 332 ~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 407 (460)
....||..+=-.|+ ++.++..|.+++..++ |.-|-..+|...|..-.+.++++.+..++++.++.+ |.|..+
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~ 473 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYA 473 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHH
Confidence 34444444333332 4556666666665554 333555566666666666666666666666666554 445555
Q ss_pred HHHHHHHHHhcCC--chhhhHHHHH
Q 012577 408 FQTLVQAYINAKT--PAYGIRDRMR 430 (460)
Q Consensus 408 ~~~l~~~~~~~g~--~~~~~~~~m~ 430 (460)
|......-...|+ .+.+++..-.
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi 498 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAI 498 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 5555554444554 3445554433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.9e-09 Score=94.48 Aligned_cols=51 Identities=22% Similarity=0.227 Sum_probs=24.8
Q ss_pred HHHHHhhCHHHHHHHHHhcccC-CCchhHHHHHHHHHHcCCCHHHHHHHHHH
Q 012577 68 DLIAKLRGLQKAESYIQKIPES-FRGEVVYRTLLANCVAGNNVKKAEEVFNR 118 (460)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 118 (460)
-+|++...++.|.+++.+..+. ..+...|.+-...=-.+|+.+...++.++
T Consensus 414 lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~r 465 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDR 465 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3444455555555555555444 22344454444444445555555555443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.6e-09 Score=94.83 Aligned_cols=373 Identities=11% Similarity=0.051 Sum_probs=230.6
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHH
Q 012577 24 RAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANC 103 (460)
Q Consensus 24 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~ 103 (460)
|......+..+.++|+.......|+.....-+..-....|...+......+-++.+.++++...+. ++..-+..|..+
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~~eeyie~L 179 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEAREEYIEYL 179 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHHHHHHHHHH
Confidence 345555666677788888888888887776544455667888888888888899999999987763 344467778888
Q ss_pred HcCCCHHHHHHHHHHHHhCC------CCCChhhhHHHHHHHHhcCc----hHHHHHHHHHHHcCCCCCH--HHHHHHHHH
Q 012577 104 VAGNNVKKAEEVFNRMKDKG------FPVTSFACNQLLILYKRLDK----KKVADVLLLMEKENVKLTQ--FSYKILIDI 171 (460)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~g------~~~~~~~~~~ll~~~~~~~~----~~a~~~~~~~~~~~~~~~~--~~~~~li~~ 171 (460)
++.+++++|.+.+...+... -+.+...|..+....++..+ -....+++.+... -+|. ..|++|.+.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADY 257 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHH
Confidence 89999999999888776431 24455667777776666554 3334455544433 3443 468899999
Q ss_pred HhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh------------------------------------------
Q 012577 172 KGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVS------------------------------------------ 209 (460)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~------------------------------------------ 209 (460)
|.+.|.+++|..+|++....- .+..-|..+.++|++
T Consensus 258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 999999999999988865541 122112222222211
Q ss_pred ------------------------CCChHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCChhHHHHHHHHhc
Q 012577 210 ------------------------GGRKEKAEAMLKEMEGDNLKE------HRWTCRLLLPLYAELGKADQVARIWKLCE 259 (460)
Q Consensus 210 ------------------------~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 259 (460)
.|+..+-...|.++.+. +.| -...|..+.+.|...|+++.|..+|+...
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 23344455555555432 111 12456677788888888888888888766
Q ss_pred cCC--CH----HHHHHHHHHHHccCCHHHHHHHHHHHHhcccC-----------------cCHHHHHHHHHHHHhcCCHH
Q 012577 260 SNP--WL----DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKK-----------------LSTKHYTALLKVYADHKMLS 316 (460)
Q Consensus 260 ~~~--~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----------------p~~~~~~~li~~~~~~g~~~ 316 (460)
..| .+ .+|..-...=.+..+++.|+++.+........ -+...|...++..-..|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 533 22 24555555556667778888877766542111 12345666666666777888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc---CCHHHHHHHH
Q 012577 317 KGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKR---GDIHSTEKIF 393 (460)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~ 393 (460)
....+++.+.+..+. ++.+.......+-...-++++.+++++-+..+..+.-...|+..+..+.+. ...+.|..+|
T Consensus 495 stk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 888888888775432 232222222333344556666666666555443322234555555444331 2577777777
Q ss_pred HHHHHcCCCccH
Q 012577 394 HRMRQVGYVARF 405 (460)
Q Consensus 394 ~~m~~~~~~~~~ 405 (460)
++..+ |++|..
T Consensus 574 EqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 574 EQALD-GCPPEH 584 (835)
T ss_pred HHHHh-cCCHHH
Confidence 77777 555543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-09 Score=92.24 Aligned_cols=284 Identities=10% Similarity=0.026 Sum_probs=225.4
Q ss_pred Cc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 012577 142 DK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAML 220 (460)
Q Consensus 142 ~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 220 (460)
|+ ..|.+...+-.+.+ +.....|..-..+.-..||.+.+-.++.+..+.--.++...+-+........|+++.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 44 78888888877776 33455666777888899999999999999987632566777778888899999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCC---C-------HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 012577 221 KEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNP---W-------LDVCMAAIEAWGKLNKVEEAEAVFKRM 290 (460)
Q Consensus 221 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~-------~~~~~~li~~~~~~~~~~~a~~~~~~m 290 (460)
.++.+.+.. ++.......++|.+.|++..+..+...+.+.. + ..+|+.+++-....+..+.-...++..
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 999887765 55788899999999999999999999887622 1 236777887777777777766677766
Q ss_pred HhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCH
Q 012577 291 SKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMF 370 (460)
Q Consensus 291 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 370 (460)
... .+.++..-.+++.-+.+.|+.++|.++..+..+++..|+ -...-.+.+.++.+.-++..++-.+..+..|
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p-- 328 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP-- 328 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--
Confidence 554 344677788899999999999999999999999887776 2223346678898888888888888777767
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHHhCCCCc
Q 012577 371 SSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMRADNVFP 436 (460)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p 436 (460)
..+.+|...|.+.+.|.+|.+.|+...+ ..|+..+|+.+.+++.+.|+ .+.....+-...-..|
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 5889999999999999999999997776 47999999999999999999 4555554443333333
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-10 Score=109.41 Aligned_cols=248 Identities=12% Similarity=0.031 Sum_probs=149.7
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---------hCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 012577 176 NDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYV---------SGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELG 246 (460)
Q Consensus 176 ~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 246 (460)
+++++|.++|++..+.. +.+...|..+..++. ..+++++|...+++..+.+.. +...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 34567788888777663 233455555554443 223467788888887776543 5566777777777788
Q ss_pred ChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012577 247 KADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQ 324 (460)
Q Consensus 247 ~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 324 (460)
++++|...+++... .| +...+..+...+...|++++|...+++..+..+. +...+..++..+...|++++|...+++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 88888888877554 44 3456677777778888888888888887775443 222333344455667788888888887
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCC
Q 012577 325 MAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM-FSSYMLIMDQYAKRGDIHSTEKIFHRMRQV-GYV 402 (460)
Q Consensus 325 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~ 402 (460)
+.+..-+-++..+..+..++...|+.++|...+.++.... |+ ....+.+...|...| +.|...++.+.+. .-.
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE---ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc---chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 7665322244556667777777888888888887764432 33 233444445556666 4677766666542 122
Q ss_pred ccHHHHHHHHHHHHhcCCchhhhHHHHHhC
Q 012577 403 ARFKQFQTLVQAYINAKTPAYGIRDRMRAD 432 (460)
Q Consensus 403 ~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~ 432 (460)
+....+..++.++...++ ...+++++.+.
T Consensus 507 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~ 535 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAI-AEKMWNKFKNE 535 (553)
T ss_pred hcCchHHHHHHHHHhhhH-HHHHHHHhhcc
Confidence 333334444444332222 22233555544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-10 Score=98.80 Aligned_cols=200 Identities=15% Similarity=0.046 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPL 241 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (460)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3455556666666677777777766666543 334555666666666666666666666666554322 33344444444
Q ss_pred HHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccc-CcCHHHHHHHHHHHHhcCCHHHHHH
Q 012577 242 YAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWK-KLSTKHYTALLKVYADHKMLSKGKD 320 (460)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~ 320 (460)
+...|++++|...++ ....... ......+..+...+...|++++|..
T Consensus 109 ~~~~g~~~~A~~~~~--------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (234)
T TIGR02521 109 LCQQGKYEQAMQQFE--------------------------------QAIEDPLYPQPARSLENAGLCALKAGDFDKAEK 156 (234)
T ss_pred HHHcccHHHHHHHHH--------------------------------HHHhccccccchHHHHHHHHHHHHcCCHHHHHH
Confidence 445555555544444 4433211 1122344445555666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 321 LVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
.+....+.. +.+...+..+...+...|++++|.+.+++..+.. ..+...+..+...+...|+.++|..+.+.+..
T Consensus 157 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 157 YLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQTY--NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 666665542 2344555566666666666666666666665442 22334455555666666666666666665544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-09 Score=99.89 Aligned_cols=293 Identities=15% Similarity=0.089 Sum_probs=208.4
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHH-HHHHHH
Q 012577 26 EIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRT-LLANCV 104 (460)
Q Consensus 26 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-ll~~~~ 104 (460)
.+......+...|++++|++.++..... +.............+.+.|+.++|..++..+....|+...|.. +..+..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 4444556678899999999999775544 3445667778899999999999999999999888787666554 444442
Q ss_pred c-----CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 012577 105 A-----GNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK---KKVADVLLLMEKENVKLTQFSYKILIDIKGQSN 176 (460)
Q Consensus 105 ~-----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 176 (460)
. ..+.+...++|+++...- |.......+.-.+.. |. ..+..++..+...|+++ +|+.|-..|....
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~-g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLE-GDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPE 157 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCC-HHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChh
Confidence 2 235778888999887763 443333333222222 33 56777888888888643 5666666677666
Q ss_pred ChhHHHHHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012577 177 DLTGMDQVVEAMKSE----G----------IEPDS--STQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLP 240 (460)
Q Consensus 177 ~~~~a~~~~~~m~~~----g----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 240 (460)
..+-..+++...... + -+|+. .++..+...|-..|++++|+.++++.++..+. .+..|..-.+
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~Kar 236 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 666666666665432 1 13444 34466678888999999999999999887533 3567888889
Q ss_pred HHHhcCChhHHHHHHHHhcc--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHH------HH--HHHHHHHH
Q 012577 241 LYAELGKADQVARIWKLCES--NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTK------HY--TALLKVYA 310 (460)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------~~--~~li~~~~ 310 (460)
.+-+.|++++|.+.++..+. ..|...-+-.+..+.+.|++++|.+++......+..|... .| .-...+|.
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998776 3355666677888899999999999999888766433221 22 33467888
Q ss_pred hcCCHHHHHHHHHHHHH
Q 012577 311 DHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 311 ~~g~~~~a~~~~~~~~~ 327 (460)
+.|++..|++.|..+.+
T Consensus 317 r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999998887776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-11 Score=115.10 Aligned_cols=273 Identities=14% Similarity=0.119 Sum_probs=152.3
Q ss_pred HHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCC
Q 012577 115 VFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIE 194 (460)
Q Consensus 115 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 194 (460)
.+-.+...|+.|+..||..+|.-|+..|+-++..+|..|.-...+.+...++.++.+....++.+.+. .
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 44455666666777777777777776666333336666666655666666666666666666666554 4
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCC-CHHHHHHHHHH
Q 012577 195 PDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNP-WLDVCMAAIEA 273 (460)
Q Consensus 195 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~li~~ 273 (460)
|...||..|..+|...|+..- |+...+ -.-.+...+...|.......++..+.-.| ....-.+.+..
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~ill 148 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILL 148 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHH
Confidence 666667777777777666554 222221 11233444455555555555555433222 11122233334
Q ss_pred HHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhh
Q 012577 274 WGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADH-KMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEK 352 (460)
Q Consensus 274 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 352 (460)
....|.++.+++++..+...... .+... ++.-+... ..+++-..+.....+ .|++.+|..++.+-.-+|+.+.
T Consensus 149 lv~eglwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~ 222 (1088)
T KOG4318|consen 149 LVLEGLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDG 222 (1088)
T ss_pred HHHHHHHHHHHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhh
Confidence 44455566666665544322111 11111 23322222 223333333333322 4777777777777777777777
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 012577 353 ADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
|..++.+|.+. |+..+...|..|+-+ .++..-++.+++.|.+.|+.|+..|+...+-.+.+.|.
T Consensus 223 Ak~ll~emke~-gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 223 AKNLLYEMKEK-GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHHHHc-CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 77777777543 566666655555544 66777777777777777777777777777777766443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-10 Score=109.87 Aligned_cols=209 Identities=8% Similarity=-0.100 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---------hcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHH
Q 012577 214 EKAEAMLKEMEGDNLKEHRWTCRLLLPLYA---------ELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEE 282 (460)
Q Consensus 214 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~ 282 (460)
++|...|++..+..+. +...|..+..++. ..+++++|...+++... .| +...+..+...+...|++++
T Consensus 278 ~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~ 356 (553)
T PRK12370 278 QQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIV 356 (553)
T ss_pred HHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Confidence 5666666666654332 2334444443332 12335666666665544 33 44455556666666666666
Q ss_pred HHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 283 AEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 283 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
|...|++..+.++. +...+..+...+...|++++|...++...+.. +.+...+..++..+...|++++|...++++..
T Consensus 357 A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~ 434 (553)
T PRK12370 357 GSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 66666666665432 44556666666666666666666666666643 11222223333344455666666666666554
Q ss_pred hCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCchhhhHHH
Q 012577 363 QNKFKP-MFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGIRDR 428 (460)
Q Consensus 363 ~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 428 (460)
.. .| +...+..+..++...|+.++|...+.++.... +.+....+.+...|...|+.+...++.
T Consensus 435 ~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~a~~~l~~ 498 (553)
T PRK12370 435 QH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNSERALPTIRE 498 (553)
T ss_pred hc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccHHHHHHHHHH
Confidence 32 12 22334555556666666666666666654432 223334444555556666544444433
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.8e-11 Score=112.26 Aligned_cols=262 Identities=16% Similarity=0.139 Sum_probs=187.2
Q ss_pred CCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHH
Q 012577 90 FRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKIL 168 (460)
Q Consensus 90 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l 168 (460)
.|+.++|..+|.-|+..|+.+.|- +|.-|.-+..+.+...|+.++.+....++ +.+. .|...+|..|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 588899999999999999999999 99999888888889999999998888776 3332 6888999999
Q ss_pred HHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCC
Q 012577 169 IDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEME-GDNLKEHRWTCRLLLPLYAELGK 247 (460)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~ 247 (460)
..+|...||+.. |+...+ -...+...+...|--..-..++..+. ..+.-||..+ .+......|-
T Consensus 90 l~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~egl 154 (1088)
T KOG4318|consen 90 LKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGL 154 (1088)
T ss_pred HHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHH
Confidence 999999999877 333222 12223445566676666666665543 2344455543 4444556777
Q ss_pred hhHHHHHHHHhccCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012577 248 ADQVARIWKLCESNPWLDVCMAAIEAWGKLN-KVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMA 326 (460)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 326 (460)
++.+.+++..+.........-.++.-+.... .+++-..+-+...+ .|++.+|..++..-...|+.+.|..++.+|.
T Consensus 155 waqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 8888887766543111111111243333322 23333333333322 4899999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 012577 327 ESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGD 385 (460)
Q Consensus 327 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (460)
+.|++.+..-|-.|+-+ .++...+..++.-|. ..|+.|+..|+...+..+.++|.
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmq-e~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQ-EKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHH-HhcCCCCcchhHHHHHhhhcchh
Confidence 99999999888888876 778888888887774 55899999999988888888665
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.7e-13 Score=82.15 Aligned_cols=49 Identities=27% Similarity=0.339 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012577 160 LTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYV 208 (460)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~ 208 (460)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+++|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5566666666666666666666666666666666666666666666654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.3e-10 Score=96.12 Aligned_cols=193 Identities=15% Similarity=0.120 Sum_probs=140.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhc
Q 012577 235 CRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADH 312 (460)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 312 (460)
+..+...+...|++++|...++.... .| +...+..+...+...|++++|.+.+++..+.... +...+..+...+...
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~ 112 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLCQQ 112 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHc
Confidence 33344444444444444444443322 22 2345556667777778888888888877776443 567788888999999
Q ss_pred CCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 012577 313 KMLSKGKDLVKQMAESGC-HIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEK 391 (460)
Q Consensus 313 g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 391 (460)
|++++|...++...+... +.....+..+...+...|++++|...+++..+..+ .+...+..+...+...|++++|.+
T Consensus 113 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 113 GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP--QRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CChHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999987532 23456777788899999999999999999987643 345678888999999999999999
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHHh
Q 012577 392 IFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMRA 431 (460)
Q Consensus 392 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~ 431 (460)
.+++..+. .+.+...+..+...+...|+ .+..+.+.+..
T Consensus 191 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 191 YLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999887 36677788888888888888 45555555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.9e-13 Score=81.27 Aligned_cols=50 Identities=20% Similarity=0.432 Sum_probs=45.5
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 012577 368 PMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYIN 417 (460)
Q Consensus 368 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 417 (460)
||..+|+++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78889999999999999999999999999999999999999999998874
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.9e-11 Score=98.29 Aligned_cols=229 Identities=12% Similarity=0.050 Sum_probs=184.6
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE 244 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (460)
-+.+.++|.+.|.+.+|.+.|+..... .|-+.||-.|-..|.+..++..|+.++.+-.+.- +.|......+.+.+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence 456788999999999999999888876 6778888889999999999999999998887652 2244344556778888
Q ss_pred cCChhHHHHHHHHhcc-C-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012577 245 LGKADQVARIWKLCES-N-PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLV 322 (460)
Q Consensus 245 ~~~~~~a~~~~~~~~~-~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 322 (460)
.++.++|.++++.+.+ . .++.....+...|.-.++++-|+.+|+++++.|+. ++..|+.+.-+|.-.++++-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 8999999999998766 3 35556667777888889999999999999999887 8888999988888899999999888
Q ss_pred HHHHHcCCCCC--HHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 323 KQMAESGCHIG--PLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 323 ~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
++....--.|+ ...|-.+.......|++..|.+.|+.....+ ......++.|...-.+.|++++|..+++.....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d--~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD--AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC--cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 88876543343 3567777777888899999999998876654 345578888888888999999999999988764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-10 Score=97.03 Aligned_cols=226 Identities=11% Similarity=-0.024 Sum_probs=137.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 012577 97 RTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQS 175 (460)
Q Consensus 97 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 175 (460)
+.+.++|.+.|.+.+|.+.|+.-++. .|-+.||-.|-..|.+.++ ..|..++.+-.+. .+-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 34455555666666666555555544 3444455555555555555 5555555554443 122333334455566666
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 012577 176 NDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIW 255 (460)
Q Consensus 176 ~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 255 (460)
++.++|.++|+...+.. +.++.+...+...|.-.++++.|+.+|+.+.+-|+. ++..|+.+.-+|.-.+++|.++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 66777777776666553 345555555566666666777777777777766654 4556666666666667777776666
Q ss_pred HHhcc---CCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 256 KLCES---NPW--LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAES 328 (460)
Q Consensus 256 ~~~~~---~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 328 (460)
.+... +|+ ...|-.+.......|++..|.+.|+-.+..+.. +...++.|.-.-.+.|++++|..+++.....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 65543 232 335666666666777777777777777766544 5567777777777777777777777776653
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-08 Score=90.88 Aligned_cols=265 Identities=11% Similarity=-0.029 Sum_probs=138.4
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEM 223 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 223 (460)
.+...+.+...+.. ++....+..-|.++...|+..+-..+=.++.+.- +....+|-++.--|...|+.++|.++|.+.
T Consensus 261 ~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKa 338 (611)
T KOG1173|consen 261 KECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKA 338 (611)
T ss_pred HHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHH
Confidence 44444554444442 4444455555555555555555444444555442 334555666555555556666666666655
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHH
Q 012577 224 EGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES--NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKH 301 (460)
Q Consensus 224 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 301 (460)
..-+..- ...|-.+..+|+..|..|+|...+....+ .+.-..+.-+.--|.+.+.++.|.++|.+.....+. |+..
T Consensus 339 t~lD~~f-gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-Dplv 416 (611)
T KOG1173|consen 339 TTLDPTF-GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS-DPLV 416 (611)
T ss_pred hhcCccc-cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-cchh
Confidence 4433221 23555556666666666666555543322 111111222333455566666666666665554322 5555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHH
Q 012577 302 YTALLKVYADHKMLSKGKDLVKQMAES----G--CHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYML 375 (460)
Q Consensus 302 ~~~li~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 375 (460)
.+-+.-.....+.+.+|..+|+..+.. + .+.-..+++.|.++|.+.+.+++|+..+++.....+ -+..++.+
T Consensus 417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~--k~~~~~as 494 (611)
T KOG1173|consen 417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP--KDASTHAS 494 (611)
T ss_pred hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC--CchhHHHH
Confidence 555555555556666666666655421 0 001223456666666666666666666666655432 34446666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 012577 376 IMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYI 416 (460)
Q Consensus 376 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 416 (460)
+.-.|...|+++.|++.|.+..- +.|+..+-..++..+.
T Consensus 495 ig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 495 IGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 66666666666666666666654 3455545555544443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.3e-09 Score=96.33 Aligned_cols=289 Identities=10% Similarity=0.069 Sum_probs=203.8
Q ss_pred HHHHHHHhhCHHHHHHHHHhcccCCCchh-HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHH-HHHhcC-
Q 012577 66 CLDLIAKLRGLQKAESYIQKIPESFRGEV-VYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLI-LYKRLD- 142 (460)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~-~~~~~~- 142 (460)
....+...|++++|++.++.-...-.|.. ........+.+.|+.++|..+|..+++.+ |+...|...+. +..-..
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34566788999999999998766556654 45667788999999999999999999986 55555554444 442211
Q ss_pred ----c-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChh-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHH
Q 012577 143 ----K-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLT-GMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKA 216 (460)
Q Consensus 143 ----~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a 216 (460)
. .....+++.+... -|.......+.-.+.....+. .+..++..+...|+++ +|+.|-..|....+.+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 2 5666788877665 344444433333333323333 4556667777888643 566666666655555555
Q ss_pred HHHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC-HHHHHHHHHHHHccC
Q 012577 217 EAMLKEMEGD----N----------LKEHR--WTCRLLLPLYAELGKADQVARIWKLCES-NPW-LDVCMAAIEAWGKLN 278 (460)
Q Consensus 217 ~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~li~~~~~~~ 278 (460)
.+++...... + -+|.. +++..+...|...|++++|...++.... .|+ +..|..-...+-+.|
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC
Confidence 5555554432 1 12333 3556677888899999999999997665 565 557888899999999
Q ss_pred CHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--------HHHHHHHHHcCCCh
Q 012577 279 KVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLA--------WDALVKLHVEGGEV 350 (460)
Q Consensus 279 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~li~~~~~~~~~ 350 (460)
++.+|.+.++..+..+.. |-..-+..+..+.+.|++++|.+++....+.+..|-... ..-...+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999987665 777888888999999999999999999887765442221 23456778889999
Q ss_pred hhHHHHHHHHHH
Q 012577 351 EKADSILLKAQQ 362 (460)
Q Consensus 351 ~~a~~~~~~~~~ 362 (460)
..|++.|..+.+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 999888877655
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.3e-07 Score=79.30 Aligned_cols=413 Identities=11% Similarity=0.071 Sum_probs=234.3
Q ss_pred CCHHHHHHHHHHHH----hcccchhHHHHHHHHHhcc------------------cCCCChhhhHHHHHHHHHhhCHHHH
Q 012577 22 LSRAEIALAMANLR----TRRMYGKALQLSEWLETNK------------------KLDFIERDYASCLDLIAKLRGLQKA 79 (460)
Q Consensus 22 ~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~a 79 (460)
.+++....++..+. +.+.+..|.+-|....... ..+.+...-...+.+|...++-+.|
T Consensus 37 ~~~~~~yqll~yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~A 116 (564)
T KOG1174|consen 37 ATLDVEYQVLLYLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMA 116 (564)
T ss_pred cCchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHH
Confidence 35555555555543 4455566666666554332 1112333444567777788888889
Q ss_pred HHHHHhcccCCCchhHHHHHHHHHHcC-CC-HHHH-------------HHHHHHHHhCC---------------CCCChh
Q 012577 80 ESYIQKIPESFRGEVVYRTLLANCVAG-NN-VKKA-------------EEVFNRMKDKG---------------FPVTSF 129 (460)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~-~~~a-------------~~~~~~m~~~g---------------~~~~~~ 129 (460)
......++..... .--|.++.-+-+. ++ .+++ ++.+.-..+.+ ++|...
T Consensus 117 i~~l~~~p~t~r~-p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~d 195 (564)
T KOG1174|consen 117 IETLLQVPPTLRS-PRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFD 195 (564)
T ss_pred HHHHhcCCccccc-hhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCcc
Confidence 9888888764222 2223333222222 21 2222 22222222222 223333
Q ss_pred hhHHHHHHHHhc---CchHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012577 130 ACNQLLILYKRL---DKKKVADVLLLMEKE-NVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAK 205 (460)
Q Consensus 130 ~~~~ll~~~~~~---~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~ 205 (460)
+...-+.+++.. .+..+...+-.+... -++-|+.....+.+.+...|+.++|+..|+.....+ +-+........-
T Consensus 196 wls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~ 274 (564)
T KOG1174|consen 196 WLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAV 274 (564)
T ss_pred HHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHH
Confidence 333444444332 224444444333332 356678888999999999999999999999887553 122223333333
Q ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHH
Q 012577 206 HYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEA 283 (460)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a 283 (460)
.+.+.|+++....+...+....- -+...|-.-.......+++..|+.+-++... +| ++..+-.-...+...++.++|
T Consensus 275 LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A 353 (564)
T KOG1174|consen 275 LLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQA 353 (564)
T ss_pred HHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHH
Confidence 44677888877777766654321 1122222233344456677777777776554 23 444554445666777888888
Q ss_pred HHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHH-HcCCChhhHHHHHHHHH
Q 012577 284 EAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALV-KLH-VEGGEVEKADSILLKAQ 361 (460)
Q Consensus 284 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~-~~~~~~~~a~~~~~~~~ 361 (460)
.-.|+......+ -+...|..|+..|...|++.+|...-+...+. ++.+..+...+. ..| .....-++|..++++..
T Consensus 354 ~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L 431 (564)
T KOG1174|consen 354 VIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL 431 (564)
T ss_pred HHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh
Confidence 888887766433 26778888888888888888888777666554 344555555442 222 22334567777777765
Q ss_pred HhCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCchhhhHHHHHhCCCCcCH-H
Q 012577 362 QQNKFKPM-FSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGIRDRMRADNVFPNK-A 439 (460)
Q Consensus 362 ~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~-~ 439 (460)
+. .|+ ....+.+...+...|..++++.++++... ..||....+.|.+.+......-.++-.--++..+.|+. .
T Consensus 432 ~~---~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 432 KI---NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred cc---CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 43 343 23445666677777888888888887775 36777777777777776666333333333344455543 3
Q ss_pred HHHHH
Q 012577 440 LAAQV 444 (460)
Q Consensus 440 ~~~~l 444 (460)
+..-|
T Consensus 507 sl~Gl 511 (564)
T KOG1174|consen 507 TLRGL 511 (564)
T ss_pred HHHHH
Confidence 44433
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-09 Score=99.58 Aligned_cols=196 Identities=15% Similarity=0.101 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHhhCHHHHHHHHHhcccC--------CCchhH-HHHHHHHHHcCCCHHHHHHHHHHHHhC-----C--CC
Q 012577 62 DYASCLDLIAKLRGLQKAESYIQKIPES--------FRGEVV-YRTLLANCVAGNNVKKAEEVFNRMKDK-----G--FP 125 (460)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g--~~ 125 (460)
+...+...|...|+++.|..+++..... .|.+.+ .+.+...|...+++++|..+|+++... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3334555555555555555555443221 122222 223444555555555555555555421 1 11
Q ss_pred CChhhhHHHHHHHHhcCc-hHHHHHHHHHHH-----cCC-CCCHH-HHHHHHHHHhhcCChhHHHHHHHHHHhC---CCC
Q 012577 126 VTSFACNQLLILYKRLDK-KKVADVLLLMEK-----ENV-KLTQF-SYKILIDIKGQSNDLTGMDQVVEAMKSE---GIE 194 (460)
Q Consensus 126 ~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~-----~~~-~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~ 194 (460)
.-..+++.|-.+|.+.|+ .+|...++.... .|. .|.+. .++.+...+...+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 112334444445555555 433333332211 111 22222 3566777788888888888888765432 111
Q ss_pred C----CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC-------CCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012577 195 P----DSSTQAILAKHYVSGGRKEKAEAMLKEMEGDN-------LKEHRWTCRLLLPLYAELGKADQVARIWKL 257 (460)
Q Consensus 195 ~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (460)
+ -..+++.|...|...|++++|..++++++... ..-....++.+...|.+.+++..|.++|.+
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 2 24577888888888888888888888776421 111234556666667666776666666654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-07 Score=83.90 Aligned_cols=235 Identities=17% Similarity=0.152 Sum_probs=182.8
Q ss_pred HHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 012577 171 IKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQ 250 (460)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 250 (460)
.+.-.|+.-.|..-|+..+.... .+...|--+..+|....+.++..+.|.+..+.+.. ++.+|..-...+.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHH
Confidence 34557899999999999997752 23333777888899999999999999999987754 56778888888888899999
Q ss_pred HHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 251 VARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAES 328 (460)
Q Consensus 251 a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 328 (460)
|..=|+.... .| +...|--+..+..+.++++++...|++.+++ ++..+..|+.....+...++++.|.+.|+..++.
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999998876 44 5667777888888999999999999999987 4447889999999999999999999999998874
Q ss_pred CCC-------CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 012577 329 GCH-------IGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGY 401 (460)
Q Consensus 329 ~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 401 (460)
.-. +.+.+...++..-.+ +++..|..++.++.+.++ -....|..|...-.+.|+.++|+++|++....
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dp--kce~A~~tlaq~~lQ~~~i~eAielFEksa~l-- 566 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDP--KCEQAYETLAQFELQRGKIDEAIELFEKSAQL-- 566 (606)
T ss_pred ccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCc--hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--
Confidence 211 112222333333233 899999999999987542 23467899999999999999999999988754
Q ss_pred CccHHHHHHHHHHHH
Q 012577 402 VARFKQFQTLVQAYI 416 (460)
Q Consensus 402 ~~~~~~~~~l~~~~~ 416 (460)
..|-.-++++|.
T Consensus 567 ---Art~~E~~~a~s 578 (606)
T KOG0547|consen 567 ---ARTESEMVHAYS 578 (606)
T ss_pred ---HHhHHHHHHHHH
Confidence 234444555544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.7e-09 Score=87.90 Aligned_cols=322 Identities=11% Similarity=0.018 Sum_probs=204.5
Q ss_pred hCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHH
Q 012577 18 EGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYR 97 (460)
Q Consensus 18 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (460)
.|..+....+..++..+.+..++..|++++..-.++. +.+....+.+..+|....++..|...++++....|...-|.
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYr 81 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYR 81 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence 3555566678888888999999999999998777664 44777888899999999999999999999988777766665
Q ss_pred HH-HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHH--hcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 012577 98 TL-LANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYK--RLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKG 173 (460)
Q Consensus 98 ~l-l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 173 (460)
.. ...+-+.+.+..|+++...|... |....-..-+.+.. ..++ ..+..++++....| +..+.+...-...
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gClly 155 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLY 155 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheee
Confidence 43 45677889999999999888763 22222222222222 2233 56666776665432 3444444455567
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 012577 174 QSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVAR 253 (460)
Q Consensus 174 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 253 (460)
+.|+++.|.+-|+...+-|--.....||..+ ++.+.|+++.|++...+++++|++-.+.. + .|...+..+
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPEl-g--------IGm~tegiD 225 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPEL-G--------IGMTTEGID 225 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCcc-C--------ccceeccCc
Confidence 8999999999999988764344466787766 56678999999999999999886532210 0 000000000
Q ss_pred ---HHH--HhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-ccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 254 ---IWK--LCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT-WKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 254 ---~~~--~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 327 (460)
+-. .+....-+..+|.-...+.+.++++.|.+.+-+|.-+ ....|++|...+.-.- ..+++.+..+-+.-+.+
T Consensus 226 vrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~ 304 (459)
T KOG4340|consen 226 VRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQ 304 (459)
T ss_pred hhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHh
Confidence 000 0000111223344444556677777777777777533 2234556655443221 23445455555555555
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChhhHHHHHHH
Q 012577 328 SGCHIGPLAWDALVKLHVEGGEVEKADSILLK 359 (460)
Q Consensus 328 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 359 (460)
.+ +-...||..++-.||+..-++.|-.++.+
T Consensus 305 ~n-PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 305 QN-PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred cC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 43 33467777777778887777777777644
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.3e-09 Score=97.41 Aligned_cols=236 Identities=17% Similarity=0.146 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhC-----CC-CCCHH-HHHHHHHHHHhCCChHHHHHHHHHHHhC-----CC-
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSE-----GI-EPDSS-TQAILAKHYVSGGRKEKAEAMLKEMEGD-----NL- 228 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~- 228 (460)
..+...+...|...|+++.|..+++...+. |. .|... ..+.+...|...+++++|..+|+++... |.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346666888999999999999999887654 21 23333 3344777888889999999999888652 21
Q ss_pred -CCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc---------CCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhc---c
Q 012577 229 -KEHRWTCRLLLPLYAELGKADQVARIWKLCES---------NPWLD-VCMAAIEAWGKLNKVEEAEAVFKRMSKT---W 294 (460)
Q Consensus 229 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~---~ 294 (460)
+--..+++.|..+|.+.|++++|...+++... .|.+. .++.+...++..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 11235677777788889998888877765322 12222 3566777788888888888888765432 1
Q ss_pred cCc----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C--C-CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Q 012577 295 KKL----STKHYTALLKVYADHKMLSKGKDLVKQMAESG----C--H-IGPLAWDALVKLHVEGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 295 ~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (460)
+.+ -..+++.|...|...|++++|.++++.++... - . -....++.+...|.+.+..++|.++|.+...-
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 111 23567888888888888888888888776421 1 1 12356677777888888888888877765321
Q ss_pred ----CCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012577 364 ----NKFKPM-FSSYMLIMDQYAKRGDIHSTEKIFHRMR 397 (460)
Q Consensus 364 ----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 397 (460)
.+-.|+ ..+|..|...|.+.|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 111233 3567788888888888888888877665
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.27 E-value=9e-09 Score=81.91 Aligned_cols=197 Identities=11% Similarity=0.008 Sum_probs=131.1
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012577 164 SYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYA 243 (460)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 243 (460)
+...|.-.|...|+...|.+-+++..+.. +.+..+|..+...|.+.|+.+.|.+.|++....... +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 34456667778888888888888877764 445677777777788888888888888877765443 4456666666677
Q ss_pred hcCChhHHHHHHHHhccCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHH
Q 012577 244 ELGKADQVARIWKLCESNPW----LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGK 319 (460)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 319 (460)
..|++++|...|+.....|. ..+|..+.-+..+.|+++.|.+.|++.++.... ...+...+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 77777777777776666552 335666666666777777777777776665443 4455666666666677777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhC
Q 012577 320 DLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
.+++.....+ .++....-..|+.-...|+.+.+-++=..+...+
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 7766666554 3666666666666666677666666655554443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.1e-07 Score=83.99 Aligned_cols=93 Identities=11% Similarity=0.113 Sum_probs=60.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 012577 304 ALLKVYADHKMLSKGKDLVKQMAESGCHIG-PLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAK 382 (460)
Q Consensus 304 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (460)
.++..+-+.|+++.|..+++....+ .|+ +..|..=.+.+...|++++|..++++..+.+ .||...-..-..-..+
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD--~aDR~INsKcAKYmLr 451 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD--TADRAINSKCAKYMLR 451 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc--chhHHHHHHHHHHHHH
Confidence 4566667777777777777777765 233 3445555566677777777777777765543 4554444455555667
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 012577 383 RGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 383 ~g~~~~a~~~~~~m~~~~ 400 (460)
.++.++|.++.....+.|
T Consensus 452 An~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 452 ANEIEEAEEVLSKFTREG 469 (700)
T ss_pred ccccHHHHHHHHHhhhcc
Confidence 777777777777776665
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-06 Score=79.57 Aligned_cols=336 Identities=13% Similarity=0.078 Sum_probs=185.2
Q ss_pred HHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC-ChhhhHHHHHHHHhcCchHHHHH
Q 012577 71 AKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPV-TSFACNQLLILYKRLDKKKVADV 149 (460)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~a~~~ 149 (460)
.+.+..++|+..++-... .+..+...-...+-+.|++++|+++|+.+.+.+.+- |...-..++.+-. ...
T Consensus 90 Yrlnk~Dealk~~~~~~~--~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-------~l~ 160 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDR--LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA-------ALQ 160 (652)
T ss_pred HHcccHHHHHHHHhcccc--cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------hhh
Confidence 344555555555552222 122233333344556677777777777776654221 1111111111100 000
Q ss_pred HHHHHHcCCCCCHHHHHHH---HHHHhhcCChhHHHHHHHHHHhC-------C------CCCCHH-HHHHHHHHHHhCCC
Q 012577 150 LLLMEKENVKLTQFSYKIL---IDIKGQSNDLTGMDQVVEAMKSE-------G------IEPDSS-TQAILAKHYVSGGR 212 (460)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~-------g------~~~~~~-~~~~l~~~~~~~~~ 212 (460)
.+.+......| ..+|..+ .-.+...|++.+|+++++...+. + +..... .-.-|.-.+-..|+
T Consensus 161 ~~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 161 VQLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred HHHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 11222222233 2233333 34566789999999999888321 1 111111 12234455678899
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCChh-HHHHHHH-------------------------------
Q 012577 213 KEKAEAMLKEMEGDNLKEHRWTC----RLLLPLYAELGKAD-QVARIWK------------------------------- 256 (460)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~-~a~~~~~------------------------------- 256 (460)
..+|..+|...++.... |.... |.|+.+-....-++ .++..++
T Consensus 240 t~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred hHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887643 43222 22222111111111 0000000
Q ss_pred ----------HhccCC---CHHHHHHHHHHHH--ccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 012577 257 ----------LCESNP---WLDVCMAAIEAWG--KLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDL 321 (460)
Q Consensus 257 ----------~~~~~~---~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 321 (460)
.....| ....+.+++.... +......+.+++...-+....-...+.-.++......|+++.|.++
T Consensus 319 ~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 319 FTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred HhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 000111 1122333333322 2224566777777666654433355667778888999999999999
Q ss_pred HH--------HHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCC-CcC----HHHHHHHHHHHHhcCCHHH
Q 012577 322 VK--------QMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKF-KPM----FSSYMLIMDQYAKRGDIHS 388 (460)
Q Consensus 322 ~~--------~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~ 388 (460)
+. .+.+.+. .+.+...++..+.+.++.+.|..+++++...... .+. ..++......-.+.|+.++
T Consensus 399 l~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 399 LSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 99 4544443 3456677788888888888888888777542110 111 1233444445567899999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 012577 389 TEKIFHRMRQVGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 389 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
|..+++++.+.+ ++|..+...++.+|++..-
T Consensus 477 a~s~leel~k~n-~~d~~~l~~lV~a~~~~d~ 507 (652)
T KOG2376|consen 477 ASSLLEELVKFN-PNDTDLLVQLVTAYARLDP 507 (652)
T ss_pred HHHHHHHHHHhC-CchHHHHHHHHHHHHhcCH
Confidence 999999999986 8999999999999998875
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.6e-07 Score=78.46 Aligned_cols=295 Identities=11% Similarity=0.049 Sum_probs=212.1
Q ss_pred CCCHHHHHHHHHHHHhCC-CCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhhcCChhHHH
Q 012577 106 GNNVKKAEEVFNRMKDKG-FPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQF-SYKILIDIKGQSNDLTGMD 182 (460)
Q Consensus 106 ~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~ 182 (460)
.++...|...+-.+.... ++-++.....+...+...|+ .++...|+..... .|+.. ......-.+.+.|+++...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHH
Confidence 445445554444333322 45567778888889999998 9999999887754 33322 2222233346788888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-C
Q 012577 183 QVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-N 261 (460)
Q Consensus 183 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~ 261 (460)
.+...+.... ......|-.-+......+++..|+.+-++.++.+.. +...|-.-..++...|++++|.--|+.... .
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 8777776442 234455555555666788999999999988876543 445555556788899999999999987665 3
Q ss_pred -CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHcCCCCC-HHHH
Q 012577 262 -PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALL-KVYAD-HKMLSKGKDLVKQMAESGCHIG-PLAW 337 (460)
Q Consensus 262 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~~-~g~~~~a~~~~~~~~~~~~~~~-~~~~ 337 (460)
.+...|..|+.+|...|++.+|.-+-+...+. .+-+..+.+.+. ..+.- ...-++|.++++...+. .|+ ....
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV 441 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAV 441 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHH
Confidence 47789999999999999999998877765553 223566666553 33332 33457899999887774 454 3566
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 012577 338 DALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTL 411 (460)
Q Consensus 338 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 411 (460)
+.+...|...|..+.++.+++..... .||....+.|.+.+...+.+++|++.|....+.+ |.|..+...|
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~---~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d-P~~~~sl~Gl 511 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLII---FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD-PKSKRTLRGL 511 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHhh---ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-ccchHHHHHH
Confidence 77888899999999999999998764 4888999999999999999999999999999876 5555555443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-06 Score=79.23 Aligned_cols=418 Identities=11% Similarity=0.121 Sum_probs=263.0
Q ss_pred CCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccC-----CCChhhhHHHHHHHHHhhC---HHHHHHHHHhcccCCCch
Q 012577 22 LSRAEIALAMANLRTRRMYGKALQLSEWLETNKKL-----DFIERDYASCLDLIAKLRG---LQKAESYIQKIPESFRGE 93 (460)
Q Consensus 22 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~ 93 (460)
++|......+..|++.+++++|.+.+........+ +.+...+..+.+..+++-+ --....++..+...++|.
T Consensus 167 ~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq 246 (835)
T KOG2047|consen 167 VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQ 246 (835)
T ss_pred cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHH
Confidence 56777778888888888888888887766544311 2234445555555554433 223445566666666664
Q ss_pred --hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHH-----------------------
Q 012577 94 --VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVAD----------------------- 148 (460)
Q Consensus 94 --~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~----------------------- 148 (460)
..|.+|...|.+.|.+++|.++|++.... ..+..-|..+.++|+.........
T Consensus 247 ~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a 324 (835)
T KOG2047|consen 247 LGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMA 324 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHH
Confidence 56999999999999999999999998775 346667777777776554311111
Q ss_pred HHHHHHHcC-----------CCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhCC
Q 012577 149 VLLLMEKEN-----------VKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEP------DSSTQAILAKHYVSGG 211 (460)
Q Consensus 149 ~~~~~~~~~-----------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~------~~~~~~~l~~~~~~~~ 211 (460)
-|+.+...+ -+-++..|..-+ -+..|+..+-...|.+.... +.| -...|..+...|-..|
T Consensus 325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcC
Confidence 111111110 011222332222 22356677777778777654 122 1356888999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHhccCC--------------------CHHHHH
Q 012577 212 RKEKAEAMLKEMEGDNLKEH---RWTCRLLLPLYAELGKADQVARIWKLCESNP--------------------WLDVCM 268 (460)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~ 268 (460)
+.+.|..+|++..+-..+-- ..+|..-.+.=.+..+++.|+++.+....-| +...|.
T Consensus 402 ~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs 481 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWS 481 (835)
T ss_pred cHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHH
Confidence 99999999999987654322 3456666666677888999999887654322 122344
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHc-
Q 012577 269 AAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGP-LAWDALVKLHVE- 346 (460)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~- 346 (460)
-.++.--..|-++....+|+.+.+..+. ++...-.....+-.+.-++++.++++.-+..=-.|+. ..|+..+.-+.+
T Consensus 482 ~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence 5555556678899999999999987654 4444433444455566688888888775554223443 466665555543
Q ss_pred --CCChhhHHHHHHHHHHhCCCCcCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHH-hcC
Q 012577 347 --GGEVEKADSILLKAQQQNKFKPMFSS--YMLIMDQYAKRGDIHSTEKIFHRMRQVGYVAR--FKQFQTLVQAYI-NAK 419 (460)
Q Consensus 347 --~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~-~~g 419 (460)
...++.|..+|+++.+ +++|...- |-.....--+.|-...|+.++++.... +++. ...||..|.--. .-|
T Consensus 561 ygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yG 637 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYG 637 (835)
T ss_pred hcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhC
Confidence 3468999999999987 55564322 222222223458888999999997653 4443 245777664333 335
Q ss_pred C-chhhhHHHHHhCCCCcCHHHHHHHHHHHHH
Q 012577 420 T-PAYGIRDRMRADNVFPNKALAAQVAQVDAF 450 (460)
Q Consensus 420 ~-~~~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 450 (460)
- ....++++-.+. -|+......-.+...+
T Consensus 638 v~~TR~iYekaIe~--Lp~~~~r~mclrFAdl 667 (835)
T KOG2047|consen 638 VPRTREIYEKAIES--LPDSKAREMCLRFADL 667 (835)
T ss_pred CcccHHHHHHHHHh--CChHHHHHHHHHHHHH
Confidence 4 566777666654 7777777766555555
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5e-07 Score=76.66 Aligned_cols=153 Identities=10% Similarity=0.102 Sum_probs=66.8
Q ss_pred HHHHHHhcCChhHHHHHHHHhcc-CCCHHHHH-----HHHHHHHccCCHHHHHHHHHHHHhcccCcCH-HHHHHHHHHHH
Q 012577 238 LLPLYAELGKADQVARIWKLCES-NPWLDVCM-----AAIEAWGKLNKVEEAEAVFKRMSKTWKKLST-KHYTALLKVYA 310 (460)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~ 310 (460)
|+--|.+.+++++|..+.+.+.. .|-..... ++..-.....++.-|.+.|+-.-+.+..-|. ..-.++...+.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF 370 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF 370 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence 34456677777777777766543 22222222 2222222223344555555544443322221 12233333333
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHH-HHHHHHHHhcCCHHHH
Q 012577 311 DHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSY-MLIMDQYAKRGDIHST 389 (460)
Q Consensus 311 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a 389 (460)
-..++++++.++..+... +..|...--.+.++++..|.+.+|.++|-.+.. ..++ |..+| ..+.++|.++++++.|
T Consensus 371 L~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~-~~ik-n~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISG-PEIK-NKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC-hhhh-hhHHHHHHHHHHHHhcCCchHH
Confidence 344455555555555443 222222222345555555555555555544321 1112 22333 2334455555555555
Q ss_pred HHHH
Q 012577 390 EKIF 393 (460)
Q Consensus 390 ~~~~ 393 (460)
++++
T Consensus 448 W~~~ 451 (557)
T KOG3785|consen 448 WDMM 451 (557)
T ss_pred HHHH
Confidence 4443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.4e-08 Score=84.83 Aligned_cols=227 Identities=11% Similarity=0.063 Sum_probs=130.1
Q ss_pred CChhHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 012577 176 NDLTGMDQVVEAMKSEG-IEPD--SSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVA 252 (460)
Q Consensus 176 ~~~~~a~~~~~~m~~~g-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 252 (460)
+..+.++.-+.++.... ..|+ ...|..+...+...|++++|...|++..+..+. +...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 34455555555555431 1111 344566666666777777777777776665432 4566667777777777777777
Q ss_pred HHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 012577 253 RIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGC 330 (460)
Q Consensus 253 ~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 330 (460)
..|+.... .| +...+..+...+...|++++|.+.|+...+..+ +..........+...++.++|...+.......
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 77766544 34 345666677777777788888888777776533 22211222222344667888888876654332
Q ss_pred CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCc-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 012577 331 HIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKP-----MFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARF 405 (460)
Q Consensus 331 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 405 (460)
.|+...+ . ......|+...+ +.+..+.+.....+ ....|..+...+.+.|++++|+..|++..+.+ +||.
T Consensus 196 ~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~ 270 (296)
T PRK11189 196 DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNF 270 (296)
T ss_pred CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchH
Confidence 2332221 1 222334555444 34444432111111 22467777888888888888888888888766 5555
Q ss_pred HHHHHH
Q 012577 406 KQFQTL 411 (460)
Q Consensus 406 ~~~~~l 411 (460)
+-+...
T Consensus 271 ~e~~~~ 276 (296)
T PRK11189 271 VEHRYA 276 (296)
T ss_pred HHHHHH
Confidence 544443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-06 Score=82.04 Aligned_cols=203 Identities=11% Similarity=-0.015 Sum_probs=133.6
Q ss_pred CCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccC-CCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHH
Q 012577 56 LDFIERDYASCLDLIAKLRGLQKAESYIQKIPES-FRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQL 134 (460)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 134 (460)
+..++..|-.+.-++..+|+++.+.+.|++.... ......|+.+...|...|.-..|..+++.-......|+..+--.+
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 4567788888888899999999999999986543 456678999999999999999999998876654322333332222
Q ss_pred H-HHHHhc-Cc-hHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHhhc-----------CChhHHHHHHHHHHhCCCCCC
Q 012577 135 L-ILYKRL-DK-KKVADVLLLMEKE--NV--KLTQFSYKILIDIKGQS-----------NDLTGMDQVVEAMKSEGIEPD 196 (460)
Q Consensus 135 l-~~~~~~-~~-~~a~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~g~~~~ 196 (460)
. ..|.+. +. +++.++-.+..+. +. ......|..+.-+|... ....++++.+++..+.+ +.|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTD 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCC
Confidence 2 233332 22 4444444444331 10 12233444444444321 12356777888887664 233
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhc
Q 012577 197 SSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCE 259 (460)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 259 (460)
..+.-.+.--|+..++.+.|.+..++..+-+..-+...|..+.-.+...+++.+|+.+.+...
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 333333444577888999999999999887666688888888888888999999988877543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.3e-08 Score=85.25 Aligned_cols=63 Identities=14% Similarity=0.030 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEG 225 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (460)
...|+.+...+...|++++|.+.|+...+.. +-+..+|..+..++...|++++|.+.|+...+
T Consensus 98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444444444444444444444444332 12233444444444444444444444444443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-07 Score=75.63 Aligned_cols=195 Identities=18% Similarity=0.143 Sum_probs=97.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHcc
Q 012577 200 QAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKL 277 (460)
Q Consensus 200 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~ 277 (460)
...|.-.|...|+...|..-+++.++.+.. +..++..+...|.+.|+.+.|.+.|+...+ .| +..+.|.....+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 334555666666666666666666665432 344555555555556665555555554433 22 333445555555555
Q ss_pred CCHHHHHHHHHHHHhcccCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHH
Q 012577 278 NKVEEAEAVFKRMSKTWKKL-STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSI 356 (460)
Q Consensus 278 ~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 356 (460)
|++++|...|++....-.-| -..+|..+..+..+.|+.+.|.+.|++..+.. +-...+...+.....+.|++-.|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 55555555555555431111 12345555555555555555555555555542 22334444455555555555555555
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 357 LLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
++...... .++..+.-..|+.-.+.|+-+.+-++=.++.+
T Consensus 196 ~~~~~~~~--~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRG--GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhcc--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55543322 24444444444444555555544444444433
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.3e-06 Score=71.83 Aligned_cols=387 Identities=12% Similarity=0.066 Sum_probs=219.2
Q ss_pred HHHHHhcccchhHHHHHHHHHhcccCCCChhhhHH-HHHHHHHhhCHHHHHHHHHhcccC-CCchhHHHHHHHHHHcCCC
Q 012577 31 MANLRTRRMYGKALQLSEWLETNKKLDFIERDYAS-CLDLIAKLRGLQKAESYIQKIPES-FRGEVVYRTLLANCVAGNN 108 (460)
Q Consensus 31 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~ 108 (460)
+..+...+++..|+.+++.-...+ .-....... +..++.+.|++++|...++.+... .++...+-.|..++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~--~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLD--REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccc--hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH
Confidence 555667788999999887765433 112223333 445667889999999999886554 5677777778777777888
Q ss_pred HHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHH-HHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHH
Q 012577 109 VKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVL-LLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEA 187 (460)
Q Consensus 109 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 187 (460)
+.+|..+-.+.. .++-.-..++...-+.++++-..-| +.+.+ +..---+|.+.....-.+++|++++..
T Consensus 107 Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 107 YIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 888887765432 2333344455555666664433333 33322 112233455555556678888888888
Q ss_pred HHhCCCCCCHHHHHHHHH-HHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCChh---------------
Q 012577 188 MKSEGIEPDSSTQAILAK-HYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE--LGKAD--------------- 249 (460)
Q Consensus 188 m~~~g~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~--------------- 249 (460)
.... .|+-...|.-+. +|.+..-++-+.++++-..+.- +-++...+.......+ .|+..
T Consensus 177 vL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~ 253 (557)
T KOG3785|consen 177 VLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY 253 (557)
T ss_pred HHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc
Confidence 8765 355555554443 5566666777777776665542 2223333333222222 12211
Q ss_pred -HHHHHHHHhc-----------cCC-----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHH-----H
Q 012577 250 -QVARIWKLCE-----------SNP-----WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALL-----K 307 (460)
Q Consensus 250 -~a~~~~~~~~-----------~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li-----~ 307 (460)
.+..+.+.-. .-| -+..-..++-.|.+.+++.+|..+.+++.- ..|-......+. +
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQ 331 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQ 331 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhh
Confidence 1111111000 001 111233456678889999999988776543 122222222221 1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 012577 308 VYADHKMLSKGKDLVKQMAESGCHIGP-LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDI 386 (460)
Q Consensus 308 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 386 (460)
-......+.-|...|+..-+.+..-|. .--.++...+.-..++++.+-++..+..-. ...|...+ .+..+++..|++
T Consensus 332 e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~-N~AQAk~atgny 409 (557)
T KOG3785|consen 332 ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNL-NLAQAKLATGNY 409 (557)
T ss_pred hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhh-HHHHHHHHhcCh
Confidence 111222345566777666555433222 122344455555567889998888774432 33443333 467899999999
Q ss_pred HHHHHHHHHHHHcCCCccHHHHH-HHHHHHHhcCCchhhhHHHHHhCCCCcCH
Q 012577 387 HSTEKIFHRMRQVGYVARFKQFQ-TLVQAYINAKTPAYGIRDRMRADNVFPNK 438 (460)
Q Consensus 387 ~~a~~~~~~m~~~~~~~~~~~~~-~l~~~~~~~g~~~~~~~~~m~~~~~~p~~ 438 (460)
.+|+++|-++....++ |..+|. .|.++|.+.|++.. .++.|...+-+.+.
T Consensus 410 ~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~l-AW~~~lk~~t~~e~ 460 (557)
T KOG3785|consen 410 VEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQL-AWDMMLKTNTPSER 460 (557)
T ss_pred HHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchH-HHHHHHhcCCchhH
Confidence 9999999888766555 445555 45567777776433 35566665544333
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.9e-06 Score=78.87 Aligned_cols=193 Identities=13% Similarity=0.029 Sum_probs=93.7
Q ss_pred hhhHHHHHHHHHhhCHHHHHHHHHhcccCCC---ch-hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHH
Q 012577 61 RDYASCLDLIAKLRGLQKAESYIQKIPESFR---GE-VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLI 136 (460)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 136 (460)
..+..+...+...|+.+.+...+.......+ +. .........+...|++++|.+.+++..+.. |.+...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 3455555556666666666555555433211 11 112222334556777777777777776653 223333332 11
Q ss_pred HHHhc----Cc-hHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 012577 137 LYKRL----DK-KKVADVLLLMEKENVKLT-QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSG 210 (460)
Q Consensus 137 ~~~~~----~~-~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 210 (460)
.+... +. ..+.+.+.. ..+..|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 11111 11 333333332 1111222 2233344455666666666666666666554 33455556666666666
Q ss_pred CChHHHHHHHHHHHhCCCC-CCH--HHHHHHHHHHHhcCChhHHHHHHHHh
Q 012577 211 GRKEKAEAMLKEMEGDNLK-EHR--WTCRLLLPLYAELGKADQVARIWKLC 258 (460)
Q Consensus 211 ~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~ 258 (460)
|++++|...+++....... |+. ..|..+...+...|++++|..+++..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666666665543221 111 12334444455555555555555443
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-05 Score=75.29 Aligned_cols=394 Identities=10% Similarity=-0.006 Sum_probs=244.7
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCC
Q 012577 11 TLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESF 90 (460)
Q Consensus 11 ~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 90 (460)
.+.++.......++..+..+.-.+...|++..+.+.|+.....- -...+.|..+...+..+|.-..|..+.+.-....
T Consensus 310 ~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~--~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~ 387 (799)
T KOG4162|consen 310 LLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS--FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKS 387 (799)
T ss_pred HHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccc
Confidence 34444444556788899999999999999999999998876432 2356788889999999999999999999865543
Q ss_pred --C-chhHHHHHHHHHH-cCCCHHHHHHHHHHHHhC--CC--CCChhhhHHHHHHHHhcCc------------hHHHHHH
Q 012577 91 --R-GEVVYRTLLANCV-AGNNVKKAEEVFNRMKDK--GF--PVTSFACNQLLILYKRLDK------------KKVADVL 150 (460)
Q Consensus 91 --~-~~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~--g~--~~~~~~~~~ll~~~~~~~~------------~~a~~~~ 150 (460)
| +...+-..-..|. +.+..+++++.-.+.... +. ...+..|..+.-+|...-. .++.+.+
T Consensus 388 ~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqal 467 (799)
T KOG4162|consen 388 EQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQAL 467 (799)
T ss_pred cCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHH
Confidence 3 3333333334443 456777777776666551 11 1123344444444432211 4566777
Q ss_pred HHHHHcC-CCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC-CC
Q 012577 151 LLMEKEN-VKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD-NL 228 (460)
Q Consensus 151 ~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~ 228 (460)
++..+.+ -.|++..| +.--|+..++++.|++...+..+.+-.-+...|..|.-.+...+++.+|+.+.+..... |.
T Consensus 468 e~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 468 EEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred HHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 7777664 23444433 44457788999999999999998855778999999999999999999999999876643 21
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHH-------HH-------------------Hhcc---CC--CHHHHHHHHHHHH-c
Q 012577 229 KEHRWTCRLLLPLYAELGKADQVARI-------WK-------------------LCES---NP--WLDVCMAAIEAWG-K 276 (460)
Q Consensus 229 ~~~~~~~~~l~~~~~~~~~~~~a~~~-------~~-------------------~~~~---~~--~~~~~~~li~~~~-~ 276 (460)
|-.....-++.-...++.+++... |+ .+.. ++ ...++..+..-.. +
T Consensus 546 --N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~ 623 (799)
T KOG4162|consen 546 --NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ 623 (799)
T ss_pred --hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh
Confidence 000001111111223444443322 22 1110 01 1112221111111 1
Q ss_pred c--CCHHHHHHHHHHHHhcc--cCcC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 012577 277 L--NKVEEAEAVFKRMSKTW--KKLS------TKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVE 346 (460)
Q Consensus 277 ~--~~~~~a~~~~~~m~~~~--~~p~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 346 (460)
. -..+.. +...- ..|+ ...|......+.+.++.++|...+.+.... .+.....|......+..
T Consensus 624 ~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~ 696 (799)
T KOG4162|consen 624 LKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEV 696 (799)
T ss_pred hhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHH
Confidence 0 001111 11111 1122 234556667777778888887777777664 35566677777777777
Q ss_pred CCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 012577 347 GGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEK--IFHRMRQVGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
.|..++|.+.|......+|- ++....++..++.+.|+..-|.. ++.++.+.+ +.+...|-.|...+-+.|+
T Consensus 697 ~~~~~EA~~af~~Al~ldP~--hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 697 KGQLEEAKEAFLVALALDPD--HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred HHhhHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccc
Confidence 88888888888777654432 33566777888888887777776 888888877 6778888888888888888
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.07 E-value=3e-08 Score=85.99 Aligned_cols=85 Identities=19% Similarity=0.212 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh-hhHHHH
Q 012577 278 NKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEV-EKADSI 356 (460)
Q Consensus 278 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~ 356 (460)
+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+ +-++.+...++.+....|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 4567777777776654 34566777777777777777777777777766543 34566666666666666666 556666
Q ss_pred HHHHHHhC
Q 012577 357 LLKAQQQN 364 (460)
Q Consensus 357 ~~~~~~~~ 364 (460)
+.++....
T Consensus 259 l~qL~~~~ 266 (290)
T PF04733_consen 259 LSQLKQSN 266 (290)
T ss_dssp HHHCHHHT
T ss_pred HHHHHHhC
Confidence 66665443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-06 Score=79.06 Aligned_cols=90 Identities=13% Similarity=0.108 Sum_probs=45.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-C---CCH--HHHHHHHHHH
Q 012577 201 AILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-N---PWL--DVCMAAIEAW 274 (460)
Q Consensus 201 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~---~~~--~~~~~li~~~ 274 (460)
..+...+...|++++|...+++..+.... +...+..+..++...|++++|...++.... . +.. ..|..+...+
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 34444555556666666666655554322 334445555555556666666655554433 1 111 1233445555
Q ss_pred HccCCHHHHHHHHHHHH
Q 012577 275 GKLNKVEEAEAVFKRMS 291 (460)
Q Consensus 275 ~~~~~~~~a~~~~~~m~ 291 (460)
...|++++|..++++..
T Consensus 197 ~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 197 LERGDYEAALAIYDTHI 213 (355)
T ss_pred HHCCCHHHHHHHHHHHh
Confidence 55566666666665554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.5e-08 Score=84.91 Aligned_cols=257 Identities=12% Similarity=0.054 Sum_probs=165.0
Q ss_pred HHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 012577 169 IDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKA 248 (460)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 248 (460)
++-+.-.|++..++.-.+ .....-+.+......+.+++...|+++.++ .++.... .|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 344556788888876665 222221223445566777888888877544 3443333 56666665565555444555
Q ss_pred hHHHHHHHHhccCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012577 249 DQVARIWKLCESNP----WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQ 324 (460)
Q Consensus 249 ~~a~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 324 (460)
+.+..-++.....+ +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55655555443322 2222223335567789999999888643 2567777888999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHH----cCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 325 MAESGCHIGPLAWDALVKLHV----EGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 325 ~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
|.+. ..| .+...+..++. -.+.+.+|..+|+++.++. .++..+.+.+..++...|++++|.+++++..+.+
T Consensus 157 ~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 157 MQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 9874 334 33444444433 2346999999999986653 5677888999999999999999999999988766
Q ss_pred CCccHHHHHHHHHHHHhcCCc---hhhhHHHHHhCCCCcCHHHHHHH
Q 012577 401 YVARFKQFQTLVQAYINAKTP---AYGIRDRMRADNVFPNKALAAQV 444 (460)
Q Consensus 401 ~~~~~~~~~~l~~~~~~~g~~---~~~~~~~m~~~~~~p~~~~~~~l 444 (460)
+-++.++..++.+....|+. +...+.+++. ..|+.....-+
T Consensus 232 -~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~h~~~~~~ 275 (290)
T PF04733_consen 232 -PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPNHPLVKDL 275 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTTSHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCCChHHHHH
Confidence 55777888888888888885 5566666665 36665554444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.9e-07 Score=91.10 Aligned_cols=223 Identities=14% Similarity=0.136 Sum_probs=183.9
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHH-HHH
Q 012577 194 EPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD-NLKE---HRWTCRLLLPLYAELGKADQVARIWKLCESNPWLD-VCM 268 (460)
Q Consensus 194 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~ 268 (460)
+.+...|-..|....+.++.++|.++.++++.. ++.- -.-.|.++++.-...|.-+...++|++.-+--+.. .|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 556778888898999999999999999988764 1211 12467778887778888888999999887755554 688
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHc
Q 012577 269 AAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHI--GPLAWDALVKLHVE 346 (460)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~ 346 (460)
.|...|.+.+.+++|.++++.|.+.-- -....|...+..+.++++-+.|..++.++.+. .+- ........+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS-LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cchhhhHHHHHHHHHHHhh
Confidence 999999999999999999999998633 47789999999999999999999999999875 222 35667777888889
Q ss_pred CCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH--HHHHHHHHHHHhcCC
Q 012577 347 GGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARF--KQFQTLVQAYINAKT 420 (460)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~g~ 420 (460)
.|+.+.+..+|+.....++-+-| .|+.+++.-.+.|+.+.++.+|++....++.|.. ..|.-++.-=-+.|+
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtD--lW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTD--LWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchh--HHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 99999999999999887765554 8999999999999999999999999999887753 467777776667777
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-05 Score=74.40 Aligned_cols=396 Identities=12% Similarity=0.109 Sum_probs=252.4
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccC-CCchhHHHHHHHH
Q 012577 24 RAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPES-FRGEVVYRTLLAN 102 (460)
Q Consensus 24 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ll~~ 102 (460)
...+..-+..+...+++...+.+.+.+... ++-..++.....--+...|+-++|.......... ..+.+.|..+.-.
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHH
Confidence 334444444456678899999999988885 4666777777777778889999999988886554 5678899999988
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHH
Q 012577 103 CVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGM 181 (460)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 181 (460)
+....++++|++.|......+ +.+...+.-+-..-++.++ +...+....+.+.. +-....|..+..++.-.|+...|
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999998875 3355666655555566666 44445555555442 33445788888899999999999
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHH------HHhCCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhHHHH
Q 012577 182 DQVVEAMKSEG-IEPDSSTQAILAKH------YVSGGRKEKAEAMLKEMEGDNLKEHRWTC-RLLLPLYAELGKADQVAR 253 (460)
Q Consensus 182 ~~~~~~m~~~g-~~~~~~~~~~l~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~ 253 (460)
..+.++..+.. -.|+...|...... ..+.|.+++|.+-+..-... + .|...+ ..-...+.+.+++++|..
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 99999988664 24666666554433 34578888888777655433 2 233333 345677889999999999
Q ss_pred HHHHhcc-CCCHHHHHHH-HHHHHccCCHHHHH-HHHHHHHhccc---CcC----------------------------H
Q 012577 254 IWKLCES-NPWLDVCMAA-IEAWGKLNKVEEAE-AVFKRMSKTWK---KLS----------------------------T 299 (460)
Q Consensus 254 ~~~~~~~-~~~~~~~~~l-i~~~~~~~~~~~a~-~~~~~m~~~~~---~p~----------------------------~ 299 (460)
++..+.. .|+...|.-. ..++.+.-+..++. .+|....+.-. .|- +
T Consensus 241 ~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 241 VYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 9998776 7877766544 44444333333344 56655443211 000 0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH----H--cCC------------CCCHHH--HHHHHHHHHcCCChhhHHHHHHH
Q 012577 300 KHYTALLKVYADHKMLSKGKDLVKQMA----E--SGC------------HIGPLA--WDALVKLHVEGGEVEKADSILLK 359 (460)
Q Consensus 300 ~~~~~li~~~~~~g~~~~a~~~~~~~~----~--~~~------------~~~~~~--~~~li~~~~~~~~~~~a~~~~~~ 359 (460)
.++..+...|-.....+ +++++. . .|. +|+... +-.++..+-+.|+++.|..+++.
T Consensus 321 ~vf~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 321 SVFKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred chhhhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 11222222221111111 222221 1 011 344433 34567778889999999999998
Q ss_pred HHHhCCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHHhCC
Q 012577 360 AQQQNKFKPMF-SSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMRADN 433 (460)
Q Consensus 360 ~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~ 433 (460)
++... |+. ..|..-.+.+...|++++|..++++..+.+ .||...=.--..-..+..+ .|..+.......|
T Consensus 397 AIdHT---PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 397 AIDHT---PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HhccC---chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 87543 443 345555677888899999999999998877 5554433233333444444 3444444444433
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-05 Score=71.00 Aligned_cols=373 Identities=11% Similarity=-0.000 Sum_probs=222.4
Q ss_pred HHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCc-hhHHHHHHHHHHcCCCHHH
Q 012577 33 NLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRG-EVVYRTLLANCVAGNNVKK 111 (460)
Q Consensus 33 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~ 111 (460)
.....|+++.|+..|....... |++.-.|+.-..+|++.|++++|++--.+-.+..|+ ...|.-...++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 4567799999999998877664 557777888999999999999999888877776676 4678899999999999999
Q ss_pred HHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHH------HHHHHHHcC---CCCCHHHHHHHHHHHhh--------
Q 012577 112 AEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVAD------VLLLMEKEN---VKLTQFSYKILIDIKGQ-------- 174 (460)
Q Consensus 112 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~------~~~~~~~~~---~~~~~~~~~~li~~~~~-------- 174 (460)
|+..|.+-++.. +.+...++-+..++... ..+.+ ++..+.... .......|..++..+-+
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLED--YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhHH--HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 999999887763 33555566666555111 01111 111110000 00000112222221111
Q ss_pred --cCChhHHHHHHHHH-----HhCC-------CCC------------C----------HHHHHHHHHHHHhCCChHHHHH
Q 012577 175 --SNDLTGMDQVVEAM-----KSEG-------IEP------------D----------SSTQAILAKHYVSGGRKEKAEA 218 (460)
Q Consensus 175 --~~~~~~a~~~~~~m-----~~~g-------~~~------------~----------~~~~~~l~~~~~~~~~~~~a~~ 218 (460)
...+..|...+... ...| ..| | ..-...+.++..+..+++.|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 00111111111000 0000 011 0 1124456666677777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCC-C-HH-------HHHHHHHHHHccCCHHHHHHHHHH
Q 012577 219 MLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNP-W-LD-------VCMAAIEAWGKLNKVEEAEAVFKR 289 (460)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~-~~-------~~~~li~~~~~~~~~~~a~~~~~~ 289 (460)
-+....+.. -+..-++....+|...|.+......-....+.. . .. .+..+..+|.+.++++.|+..|.+
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 777766654 244444555566666666655544433222111 0 01 112233455556667777777766
Q ss_pred HHhcccCcCHHH-------------------------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012577 290 MSKTWKKLSTKH-------------------------YTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLH 344 (460)
Q Consensus 290 m~~~~~~p~~~~-------------------------~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 344 (460)
.......|+..+ ...-...+.+.|++..|+..|.+++... +-|...|..-.-+|
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACY 402 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence 554433333221 1112445667899999999999999885 67889999999999
Q ss_pred HcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 012577 345 VEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYIN 417 (460)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 417 (460)
.+.|.+..|+.=.+...+.++ +....|..-..++.-..++++|.+.|++.++.+ |+..-+...+.-|..
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~p--~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELDP--NFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence 999999999998888776542 223344444555666678999999999998865 555555555555555
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.7e-05 Score=80.70 Aligned_cols=332 Identities=9% Similarity=0.047 Sum_probs=208.2
Q ss_pred HHHHHhhCHHHHHHHHHhcccC--CCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC------CCChh--hhHHHHHH
Q 012577 68 DLIAKLRGLQKAESYIQKIPES--FRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGF------PVTSF--ACNQLLIL 137 (460)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~------~~~~~--~~~~ll~~ 137 (460)
..+...|+++.+..+++.++.. ..+..........+...|++++|...+....+.-- .+... ....+-..
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 3445567888888888877532 11222223344455678999999999987754311 11111 11112224
Q ss_pred HHhcCc-hHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhhcCChhHHHHHHHHHHhC----CCCCC--HHHHHHHHHH
Q 012577 138 YKRLDK-KKVADVLLLMEKENVKLTQ----FSYKILIDIKGQSNDLTGMDQVVEAMKSE----GIEPD--SSTQAILAKH 206 (460)
Q Consensus 138 ~~~~~~-~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~~~--~~~~~~l~~~ 206 (460)
+...|+ +++...++.....--..+. ...+.+...+...|++++|...+++.... | .+. ..++..+...
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g-~~~~~~~~~~~la~~ 540 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD-VYHYALWSLLQQSEI 540 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc-chHHHHHHHHHHHHH
Confidence 445666 8888888776653111121 24556667788899999999999887643 2 111 2355666778
Q ss_pred HHhCCChHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHhcc-----CCC--HHHHHHHHH
Q 012577 207 YVSGGRKEKAEAMLKEMEG----DNLK--E-HRWTCRLLLPLYAELGKADQVARIWKLCES-----NPW--LDVCMAAIE 272 (460)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~--~~~~~~li~ 272 (460)
+...|++++|...+++... .+.. + ....+..+...+...|++++|...+..... .+. ...+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 8899999999999887654 2221 1 223445566677788999999988876533 121 223445666
Q ss_pred HHHccCCHHHHHHHHHHHHhcccCc-CHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 012577 273 AWGKLNKVEEAEAVFKRMSKTWKKL-STKHY-----TALLKVYADHKMLSKGKDLVKQMAESGCHIG---PLAWDALVKL 343 (460)
Q Consensus 273 ~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~ 343 (460)
.+...|+.+.|.+.+.......... ....+ ...+..+...|+.+.|...+........... ...+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 7788999999999998875421110 11111 1122444558899999998777554221111 1123456777
Q ss_pred HHcCCChhhHHHHHHHHHHh---CCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 344 HVEGGEVEKADSILLKAQQQ---NKFKPM-FSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
+...|+.++|...++++... .+..++ ..+...+..++.+.|+.++|...+.+..+..
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88899999999999987653 222221 2455667778889999999999999998754
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-06 Score=71.90 Aligned_cols=311 Identities=12% Similarity=0.129 Sum_probs=174.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHH-HHHHHh
Q 012577 96 YRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKI-LIDIKG 173 (460)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~ 173 (460)
+++.+..+.+..++..|++++..-.++. +.+....+.+..+|....+ ..|...++++... .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 5556666677778888888887776663 2255556666666666665 7777777777654 454444432 245566
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 012577 174 QSNDLTGMDQVVEAMKSEGIEPDSSTQAILAK--HYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQV 251 (460)
Q Consensus 174 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 251 (460)
+.+.+..|+++...|.+. |+...-..-+. .....+++..+..++++....| +..+.+...-...+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 777777888877777643 33222222222 2334566667776666654322 223333444445677788888
Q ss_pred HHHHHHhccC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccC-------------cCHH--------HHHHHH-
Q 012577 252 ARIWKLCESN---PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKK-------------LSTK--------HYTALL- 306 (460)
Q Consensus 252 ~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-------------p~~~--------~~~~li- 306 (460)
.+-|+...+- .....|+.-+ +..+.|+++.|++...++.++|++ ||.. +-+.++
T Consensus 164 vqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 8777765541 1333454433 344567778888888888877764 1111 112222
Q ss_pred ------HHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012577 307 ------KVYADHKMLSKGKDLVKQMAE-SGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQ 379 (460)
Q Consensus 307 ------~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (460)
..+.+.|+++.|.+.+..|.- .....|+.|...+.-.=. .+++.+..+-+.-+...++++| .||..++-.
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~--ETFANlLll 319 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPP--ETFANLLLL 319 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCCh--HHHHHHHHH
Confidence 233456777777777666632 223446666655543322 2334444444444555555444 577777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCC
Q 012577 380 YAKRGDIHSTEKIFHRMRQVGYV-ARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 380 ~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~g~ 420 (460)
|+++.-++.|-.++.+=...-+. .+...|+ |++++.....
T Consensus 320 yCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT 360 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQT 360 (459)
T ss_pred HhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCC
Confidence 88877777777776644332211 1222232 4555555554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=5e-05 Score=78.75 Aligned_cols=327 Identities=12% Similarity=0.026 Sum_probs=197.6
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcC--C----CCCH--HHHHHHHHHH
Q 012577 102 NCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKEN--V----KLTQ--FSYKILIDIK 172 (460)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~--~----~~~~--~~~~~li~~~ 172 (460)
.....|+++.+...++.+.......++.........+...++ +++...+......- . .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 345567777777776665321111122222333334455566 77777776654421 0 1111 1222334556
Q ss_pred hhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHH
Q 012577 173 GQSNDLTGMDQVVEAMKSEGIEPD----SSTQAILAKHYVSGGRKEKAEAMLKEMEGD----NL-KEHRWTCRLLLPLYA 243 (460)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~ 243 (460)
...|+++.|...+++..+.-...+ ....+.+...+...|++++|...+++.... |. .+...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 789999999999998876311122 134566667778899999999999887642 11 111234556677888
Q ss_pred hcCChhHHHHHHHHhcc------CC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc----ccCcCHHHHHHHHHHH
Q 012577 244 ELGKADQVARIWKLCES------NP----WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT----WKKLSTKHYTALLKVY 309 (460)
Q Consensus 244 ~~~~~~~a~~~~~~~~~------~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~ 309 (460)
..|+++.|...+++... .+ ....+..+...+...|++++|...+.+.... +.......+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 99999999998876433 11 1223445566677789999999999887543 1111233455566778
Q ss_pred HhcCCHHHHHHHHHHHHHcC--CCCCHHH--H--HHHHHHHHcCCChhhHHHHHHHHHHhCCCCc--CHHHHHHHHHHHH
Q 012577 310 ADHKMLSKGKDLVKQMAESG--CHIGPLA--W--DALVKLHVEGGEVEKADSILLKAQQQNKFKP--MFSSYMLIMDQYA 381 (460)
Q Consensus 310 ~~~g~~~~a~~~~~~~~~~~--~~~~~~~--~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 381 (460)
...|++++|...+....... ....... . ...+..+...|+.+.|.+++..........+ ....+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999988875421 1111111 0 1122444568899999998876533111111 0111345677888
Q ss_pred hcCCHHHHHHHHHHHHHc----CCCc-cHHHHHHHHHHHHhcCC--chhhhHHH
Q 012577 382 KRGDIHSTEKIFHRMRQV----GYVA-RFKQFQTLVQAYINAKT--PAYGIRDR 428 (460)
Q Consensus 382 ~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~--~~~~~~~~ 428 (460)
..|+.++|...+++.... |..+ ...++..+..++...|+ .+...+.+
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999988753 3232 23467777788888898 44444433
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.7e-09 Score=57.91 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=15.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 012577 157 NVKLTQFSYKILIDIKGQSNDLTGMDQVVEAM 188 (460)
Q Consensus 157 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 188 (460)
|+.||..||++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34445555555555555555555555544444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.6e-09 Score=57.30 Aligned_cols=34 Identities=35% Similarity=0.558 Sum_probs=27.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012577 191 EGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEME 224 (460)
Q Consensus 191 ~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (460)
+|+.||..||++||++|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888773
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-06 Score=79.56 Aligned_cols=243 Identities=14% Similarity=0.090 Sum_probs=180.3
Q ss_pred HHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 012577 171 IKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQ 250 (460)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 250 (460)
-+.+.|++.+|.-.|+..+... +-+...|.-|.......++-..|+..+++..+.+.. +......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 4578899999999999998875 557899999999999999999999999999987654 66788888889999999999
Q ss_pred HHHHHHHhcc-CCCHHHHHHHH---------HHHHccCCHHHHHHHHHHHH-hcccCcCHHHHHHHHHHHHhcCCHHHHH
Q 012577 251 VARIWKLCES-NPWLDVCMAAI---------EAWGKLNKVEEAEAVFKRMS-KTWKKLSTKHYTALLKVYADHKMLSKGK 319 (460)
Q Consensus 251 a~~~~~~~~~-~~~~~~~~~li---------~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~a~ 319 (460)
|..+++.... +|. ..|.... ..+.....+....++|-++. ..+..+|+.....|.-.|--.|.+++|.
T Consensus 372 Al~~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9998886533 211 0000000 11222223444555555554 4444478888899999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 320 DLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMF-SSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
+.|+.++... +-|..+||.|.-.++...+.++|+..|.++.+. .|+. .....|.-.|...|.+++|.+.|-..+.
T Consensus 451 Dcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL---qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL---QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc---CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999998864 557889999999999999999999999998764 4542 3445567788999999999988876653
Q ss_pred ---c------CCCccHHHHHHHHHHHHhcCC
Q 012577 399 ---V------GYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 399 ---~------~~~~~~~~~~~l~~~~~~~g~ 420 (460)
. +..++...|.+|=.++.-.++
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~ 557 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNR 557 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence 2 112244678877777776665
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.80 E-value=0.0001 Score=71.55 Aligned_cols=273 Identities=10% Similarity=0.035 Sum_probs=158.1
Q ss_pred HHHHHHHHHHhCCC--CCHHHHHHHHHHHHhcccchhHHHHHHHHHhccc-CCCChhhhHHHHHHHHHhhCHHHHHHHHH
Q 012577 8 IHSTLTKYAEEGND--LSRAEIALAMANLRTRRMYGKALQLSEWLETNKK-LDFIERDYASCLDLIAKLRGLQKAESYIQ 84 (460)
Q Consensus 8 ~~~~l~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 84 (460)
-.+.++..++.+.+ -+|+.+...++++-..+-+.+-+++++.+.-.+. +.-+....+.++-. +-.-+.....++.+
T Consensus 966 rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~ 1044 (1666)
T KOG0985|consen 966 RRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILT-AIKADRTRVMEYIN 1044 (1666)
T ss_pred HHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHH-HhhcChHHHHHHHH
Confidence 34566666665543 4678888888888888888888888887764431 11122222323322 22334455555665
Q ss_pred hcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHH
Q 012577 85 KIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFS 164 (460)
Q Consensus 85 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 164 (460)
++..- |. ..+.......+-+++|..+|++.-- +....+.|+.--... +.|.+.-+.. -....
T Consensus 1045 rLdny--Da---~~ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie~i~~l--dRA~efAe~~------n~p~v 1106 (1666)
T KOG0985|consen 1045 RLDNY--DA---PDIAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIENIGSL--DRAYEFAERC------NEPAV 1106 (1666)
T ss_pred HhccC--Cc---hhHHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHHHhhhH--HHHHHHHHhh------CChHH
Confidence 55432 11 1123345556677888888876432 344445554422211 2333322221 23356
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE 244 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (460)
|..+..+-.+.|.+.+|++-|-+ .-|+..|..++....+.|.+++-.+++.-..+..-.|... +.|+-+|++
T Consensus 1107 WsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAk 1178 (1666)
T KOG0985|consen 1107 WSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHH
Confidence 77788888888888777766643 2356677788888888888888888877666665555433 467778888
Q ss_pred cCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHH
Q 012577 245 LGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKD 320 (460)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 320 (460)
.+++.+..++. ..|+......+.+-|...+.++.|.-+|.. ..-|..|...+...|.+..|.+
T Consensus 1179 t~rl~elE~fi----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1179 TNRLTELEEFI----AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred hchHHHHHHHh----cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHH
Confidence 88777665543 345555555566666666666666655542 2334555555555555555444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.6e-05 Score=63.56 Aligned_cols=313 Identities=12% Similarity=0.034 Sum_probs=189.8
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHH-HHHHHHHH
Q 012577 26 EIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVY-RTLLANCV 104 (460)
Q Consensus 26 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~ll~~~~ 104 (460)
.-..+-..+..+|++..|+.-|....+.+ |.+-.++-.-...|...|+-..|+.-+..+.+..||-..- -.-...+.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 34445566777788888888887766543 2222333334455667777777777777766655653322 22334567
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHH
Q 012577 105 AGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQV 184 (460)
Q Consensus 105 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 184 (460)
++|.+++|..=|+..++.. |+..+- ..++.+.- ..+++ ......+..+...||...|+..
T Consensus 118 K~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~------~~~e~---------~~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLA------LIQEH---------WVLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred hcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHH------hHHHH---------HHHHHHHHHHhcCCchhhHHHH
Confidence 8888888888888887763 221111 11111100 00000 1122334456678899999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC
Q 012577 185 VEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NPW 263 (460)
Q Consensus 185 ~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~ 263 (460)
...+.+.. +-|...|..-..+|...|.+.+|+.-++..-+..-. +..++--+-..+...|+.+.++...+++.+ +|+
T Consensus 178 i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpd 255 (504)
T KOG0624|consen 178 ITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPD 255 (504)
T ss_pred HHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc
Confidence 98888764 457778888888899999999998877776654332 445555677788888998888888887766 665
Q ss_pred HHHHHH-----------H--HHHHHccCCHHHHHHHHHHHHhcccCcCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 264 LDVCMA-----------A--IEAWGKLNKVEEAEAVFKRMSKTWKKLSTKH---YTALLKVYADHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 264 ~~~~~~-----------l--i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~ 327 (460)
-..+-. + +......+++.++++-.+...+..+...... +..+-.++...+++.+|+....+..+
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 442211 1 1223344566666666666555443322222 33344555566777777777777766
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Q 012577 328 SGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 328 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (460)
-. +.|+.++.--..+|.-..+++.|+.=|+.+.+.
T Consensus 336 ~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 336 ID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred cC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 42 233666666666776667777777777766543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00015 Score=65.59 Aligned_cols=407 Identities=12% Similarity=0.082 Sum_probs=244.7
Q ss_pred CCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHH
Q 012577 19 GNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRT 98 (460)
Q Consensus 19 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (460)
..|.+...+..+++.+..+ .++++.+.++++... +|.++..+..-|..-...++++..+++|.+-....-+...|..
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~l 91 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKL 91 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHH
Confidence 4567888999999988777 899999999998876 5777888999999999999999999999986655567888888
Q ss_pred HHHHHHc-CCCHH----HHHHHHHHH-HhCCCCCC-hhhhHHHHHHHHh---cC------c-hHHHHHHHHHHHcCCCCC
Q 012577 99 LLANCVA-GNNVK----KAEEVFNRM-KDKGFPVT-SFACNQLLILYKR---LD------K-KKVADVLLLMEKENVKLT 161 (460)
Q Consensus 99 ll~~~~~-~~~~~----~a~~~~~~m-~~~g~~~~-~~~~~~ll~~~~~---~~------~-~~a~~~~~~~~~~~~~~~ 161 (460)
.|..-.+ .|+.. ...+.|+-. .+.|+.+- -..|+..+..+.. .| + +...++++++....+.-=
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 7765433 23322 233344433 34454332 2234444443221 11 2 455567777665322111
Q ss_pred HHHHHH------HHHH-------HhhcCChhHHHHHHHHHHh--CCCCCCH---------------HHHHHHHHHHHhCC
Q 012577 162 QFSYKI------LIDI-------KGQSNDLTGMDQVVEAMKS--EGIEPDS---------------STQAILAKHYVSGG 211 (460)
Q Consensus 162 ~~~~~~------li~~-------~~~~~~~~~a~~~~~~m~~--~g~~~~~---------------~~~~~l~~~~~~~~ 211 (460)
...|+- =|+. --+...+..|.++++++.. .|..-.. ..|-.+|..=-.++
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 112211 1111 1234456777777777653 2322111 12444443221111
Q ss_pred Ch--------HHHHHHHHHH-HhCCCCCCHHHH-----HHHHHHHHhcCChhHH-------HHHHHHhcc---CCCHHHH
Q 012577 212 RK--------EKAEAMLKEM-EGDNLKEHRWTC-----RLLLPLYAELGKADQV-------ARIWKLCES---NPWLDVC 267 (460)
Q Consensus 212 ~~--------~~a~~~~~~~-~~~~~~~~~~~~-----~~l~~~~~~~~~~~~a-------~~~~~~~~~---~~~~~~~ 267 (460)
-- ....-++++. .--+..|+..-. ...-+.+...|+...| ..++++... ..+...|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 0111122222 122333433211 1112234444554443 334433222 1122233
Q ss_pred HHHHHHH---HccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 012577 268 MAAIEAW---GKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHI-GPLAWDALVKL 343 (460)
Q Consensus 268 ~~li~~~---~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~ 343 (460)
..+.+.- ...+..+.....+++....-..--..+|..++..-.+..-+..|..+|.++.+.+..+ ++...++++..
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 3332211 1112355666677766654322233578888998889999999999999999988777 77888888887
Q ss_pred HHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCC-
Q 012577 344 HVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVAR--FKQFQTLVQAYINAKT- 420 (460)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~- 420 (460)
||. ++.+-|.++|+.-.++.|-.| ..-...+..+...|+-..|..+|++....+++|+ ...|..++.-=..-|+
T Consensus 412 ~cs-kD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 412 YCS-KDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred Hhc-CChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 765 788999999998887765444 4556788888999999999999999999866655 4789999999999999
Q ss_pred -chhhhHHHHHh
Q 012577 421 -PAYGIRDRMRA 431 (460)
Q Consensus 421 -~~~~~~~~m~~ 431 (460)
.+.++-+++..
T Consensus 489 ~si~~lekR~~~ 500 (656)
T KOG1914|consen 489 NSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHHHH
Confidence 45555555443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.3e-05 Score=69.16 Aligned_cols=221 Identities=7% Similarity=-0.052 Sum_probs=115.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc--hHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012577 95 VYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK--KKVADVLLLMEKENVKLTQFSYKILIDIK 172 (460)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 172 (460)
++..+-..+...++.++|+.+.+++++.+ +-+..+|+.--.++...+. +++...++.+.+.. +.+..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 44555555666777788888888777753 1133344444444444442 56666666666553 34444555544444
Q ss_pred hhcCCh--hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 012577 173 GQSNDL--TGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQ 250 (460)
Q Consensus 173 ~~~~~~--~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 250 (460)
.+.|+. ++++.+++++.+.. +-|..+|+....++...|+++++++.++++++.++. +..+|+.....+.+.+....
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 445542 55666666666554 455666666666666666777777777777666544 34445444433332211000
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhc----CCHHHHHHHHHHHH
Q 012577 251 VARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADH----KMLSKGKDLVKQMA 326 (460)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~~~ 326 (460)
.....++.++...+++...+. |...|+.+...+... +...+|.+++.+..
T Consensus 195 -------------------------~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 195 -------------------------LEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred -------------------------ccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 000122344444444444332 455555555555542 23344555555554
Q ss_pred HcCCCCCHHHHHHHHHHHHc
Q 012577 327 ESGCHIGPLAWDALVKLHVE 346 (460)
Q Consensus 327 ~~~~~~~~~~~~~li~~~~~ 346 (460)
..+ +.+......|+..|+.
T Consensus 249 ~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 249 SKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccc-CCcHHHHHHHHHHHHh
Confidence 432 3345555556665554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.4e-06 Score=80.16 Aligned_cols=253 Identities=14% Similarity=0.093 Sum_probs=159.3
Q ss_pred CHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012577 161 TQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD-SSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLL 239 (460)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 239 (460)
+...+..|+..+...+++++|.++.+...+. .|+ ...|-.+...+.+.++.+++..+ .+ +
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NL---------------I 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hh---------------h
Confidence 4567888899998999999999999877665 344 33444444466777776665554 22 2
Q ss_pred HHHHhcCChhHHHHHHHHhccCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHH
Q 012577 240 PLYAELGKADQVARIWKLCESNP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKG 318 (460)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 318 (460)
.......++..+..+...+..-+ +...+..+..+|-+.|+.++|..+++++++..+. |+.+.|.+...|... ++++|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHH
Confidence 22222333333333333333322 3336677788888888888888888888887644 778888888888888 88888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHH-----HHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012577 319 KDLVKQMAESGCHIGPLAWDALVK-----LHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIF 393 (460)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~li~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 393 (460)
..++......-+ +..-|+.+.. +.....+++.-.++.+.+....+..--+.++-.+...|...++++++..++
T Consensus 169 ~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 169 ITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred HHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 888777765411 1111111111 011233444555555555444444444556677778888999999999999
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCCchhhhHHHHHhCCCCcC
Q 012577 394 HRMRQVGYVARFKQFQTLVQAYINAKTPAYGIRDRMRADNVFPN 437 (460)
Q Consensus 394 ~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~ 437 (460)
+.+.+.. +-|.....-++.+|...=.....+-+.++-.|+.-+
T Consensus 247 K~iL~~~-~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~ 289 (906)
T PRK14720 247 KKILEHD-NKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNN 289 (906)
T ss_pred HHHHhcC-CcchhhHHHHHHHHHHHccCcchHHHHHHHhccccC
Confidence 9999986 668888999999988332222223344555566554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.7e-06 Score=68.89 Aligned_cols=156 Identities=11% Similarity=0.102 Sum_probs=104.3
Q ss_pred HHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHH
Q 012577 240 PLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGK 319 (460)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 319 (460)
-.|...|+++.+....+.+..... .+...++.+++...++...+.++. |...|..+...|...|++++|.
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLADPLH---------QFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhCccc---------cccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 356666666665444333221110 112245567777777777766544 7778888888888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-HHcCCC--hhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012577 320 DLVKQMAESGCHIGPLAWDALVKL-HVEGGE--VEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRM 396 (460)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 396 (460)
..++...+.. +.+...+..+..+ +...|+ .++|.+++++..+.++- +...+..+...+.+.|++++|+..|+++
T Consensus 94 ~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~--~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN--EVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888887764 4467777777775 356666 48888888888776543 4456777777888888888888888888
Q ss_pred HHcCCCccHHHHH
Q 012577 397 RQVGYVARFKQFQ 409 (460)
Q Consensus 397 ~~~~~~~~~~~~~ 409 (460)
.+.. +|+..-+.
T Consensus 171 L~l~-~~~~~r~~ 182 (198)
T PRK10370 171 LDLN-SPRVNRTQ 182 (198)
T ss_pred HhhC-CCCccHHH
Confidence 8775 66554443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.8e-05 Score=63.50 Aligned_cols=297 Identities=9% Similarity=0.006 Sum_probs=190.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHH---HHHhcCc-hHHHHHHHHHHHcCCCCCHHHH-HHHHHHHh
Q 012577 99 LLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLI---LYKRLDK-KKVADVLLLMEKENVKLTQFSY-KILIDIKG 173 (460)
Q Consensus 99 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~---~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~ 173 (460)
+...+...|++..|+.-|...++- |+..|.++.+ .|...|. ..|..-+....+. +||-..- ..-...+.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 444555556666666666665553 3444444433 3444444 3344444444432 4543221 11234567
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCH----HH------------HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 012577 174 QSNDLTGMDQVVEAMKSEGIEPDS----ST------------QAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRL 237 (460)
Q Consensus 174 ~~~~~~~a~~~~~~m~~~g~~~~~----~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (460)
+.|.++.|..=|+...+.. |+. .. ....+..+...|+...|+.+...+++..+ .|...+..
T Consensus 118 K~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~ 194 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQA 194 (504)
T ss_pred hcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHH
Confidence 7888888888888877663 211 11 12233445668999999999999988643 46777778
Q ss_pred HHHHHHhcCChhHHHHHHHHhcc--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHH----HHHHH------
Q 012577 238 LLPLYAELGKADQVARIWKLCES--NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTK----HYTAL------ 305 (460)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l------ 305 (460)
-..+|...|++..|+.=++.... ..+..++--+-..+...|+.+.++...++.++.+ ||.. .|..|
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHH
Confidence 88999999999999887776554 3455566666777788899999999888888743 4432 12211
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC-HHHHHHHHH
Q 012577 306 ---LKVYADHKMLSKGKDLVKQMAESGCHIGP---LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM-FSSYMLIMD 378 (460)
Q Consensus 306 ---i~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~ 378 (460)
+......++|.++.+-.+...+..-.... ..+..+-.++...|++.+|++...++... .|+ +.++.--..
T Consensus 273 les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~---d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI---DPDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc---CchHHHHHHHHHH
Confidence 12234567777777777777665322122 33445566677788999999999888753 344 777877788
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 012577 379 QYAKRGDIHSTEKIFHRMRQVGYVARFKQFQT 410 (460)
Q Consensus 379 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 410 (460)
+|.-...+++|+.=|+...+.+ +.|...-..
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n-~sn~~~reG 380 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELN-ESNTRAREG 380 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcC-cccHHHHHH
Confidence 8998999999999999999876 444444333
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.2e-05 Score=66.93 Aligned_cols=212 Identities=8% Similarity=-0.007 Sum_probs=124.3
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGG-RKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYA 243 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 243 (460)
+..+-..+...+..++|+.+..++++.. +-+..+|+....++...| ++++++..++++.+.+.+ +..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 3344444556677778888888877664 334556666555566666 567888888877776554 3345555544455
Q ss_pred hcCCh--hHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhc---CCH-
Q 012577 244 ELGKA--DQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADH---KML- 315 (460)
Q Consensus 244 ~~~~~--~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~- 315 (460)
+.|+. +.+..+++.+.. +| +..+|+...-.+.+.|+++++++.++++++.++. |...|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccc
Confidence 55542 455556654443 33 4556666666666677777777777777776655 556666655554443 222
Q ss_pred ---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----CChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 012577 316 ---SKGKDLVKQMAESGCHIGPLAWDALVKLHVEG----GEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAK 382 (460)
Q Consensus 316 ---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (460)
++...+...++... +-|...|+.+...+... +...+|.+.+.+..... ..+......|++.|+.
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~--~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD--SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc--CCcHHHHHHHHHHHHh
Confidence 34556665665542 44666777666666652 23345666666654321 2334555666666654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.7e-05 Score=71.93 Aligned_cols=217 Identities=16% Similarity=0.219 Sum_probs=138.3
Q ss_pred HHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 012577 169 IDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKA 248 (460)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 248 (460)
+.+......|.+|+.+++.+.++. .-...|..+...|+..|+++.|.++|-+.- .++..+.+|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 445566778888888888888763 334456777888889999999988886531 345677888999999
Q ss_pred hHHHHHHHHhccCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 249 DQVARIWKLCESNP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 249 ~~a~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 327 (460)
+.|.++-+++.... ....|.+-..-+-+.|++.+|.++|-.+.. |+ ..|..|-+.|..+..+++...-..
T Consensus 808 ~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 808 EDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhCh
Confidence 99988888776543 344566666667777888888877754332 33 246677777777777766554321
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH
Q 012577 328 SGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQ 407 (460)
Q Consensus 328 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 407 (460)
..-..|...+..-|-..|++..|.+-|-+.. -|..-++.|...+.|++|-++-+ ..| ..|..-
T Consensus 879 ---d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriak---teg-g~n~~k 941 (1636)
T KOG3616|consen 879 ---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAK---TEG-GANAEK 941 (1636)
T ss_pred ---hhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHh---ccc-cccHHH
Confidence 1123456666677777788888877665441 23344455666666666655543 333 334444
Q ss_pred HHHHHHHHHhcCCch
Q 012577 408 FQTLVQAYINAKTPA 422 (460)
Q Consensus 408 ~~~l~~~~~~~g~~~ 422 (460)
....+.+-.-.|+.+
T Consensus 942 ~v~flwaksiggdaa 956 (1636)
T KOG3616|consen 942 HVAFLWAKSIGGDAA 956 (1636)
T ss_pred HHHHHHHHhhCcHHH
Confidence 444444444444433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.8e-06 Score=75.87 Aligned_cols=208 Identities=15% Similarity=0.064 Sum_probs=97.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC
Q 012577 99 LLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSND 177 (460)
Q Consensus 99 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 177 (460)
+...+...|-...|..+|++ ...|..++.+|...|+ .+|..+..+..+. +||...|..+.+.....--
T Consensus 404 laell~slGitksAl~I~Er---------lemw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFER---------LEMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHcchHHHHHHHHHh---------HHHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHH
Confidence 33444555555555555543 2345555555555554 4444444444431 4555555555555444444
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012577 178 LTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKL 257 (460)
Q Consensus 178 ~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (460)
+++|.++.+..... +-..+.....+.++++++.+-|+.-.+... ....+|-.+..+..+.++++.|.+.|..
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 55555555443221 111111112234555555555554433221 1223444444555555555555555554
Q ss_pred hcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012577 258 CES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMA 326 (460)
Q Consensus 258 ~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 326 (460)
... .| +...||++-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.++.|++.+.++.
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 433 33 23345555555555555555555555555544 2244444445555555555555555555543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.6e-06 Score=83.74 Aligned_cols=204 Identities=14% Similarity=0.123 Sum_probs=170.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhccC-------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHH
Q 012577 231 HRWTCRLLLPLYAELGKADQVARIWKLCESN-------PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYT 303 (460)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 303 (460)
+...|-..|....+.++.+.|.++.++.... .....|.++++.-...|.-+...++|+++.+.. -....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4567888888999999999999999987652 233478888888888888899999999998852 1346788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 012577 304 ALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKR 383 (460)
Q Consensus 304 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (460)
.|...|.+.+.+++|.++++.|.+. +......|...+..+.+..+-+.|.+++.++++.-+-.-........+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 9999999999999999999999986 567789999999999999999999999999987543222344555666777889
Q ss_pred CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHHhCCCCcCH
Q 012577 384 GDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMRADNVFPNK 438 (460)
Q Consensus 384 g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~ 438 (460)
|+.+.+..+|+...... |-....|+.+++.-.++|+ .+..+|++....++.|-.
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 99999999999998864 6677899999999999998 688999999999988765
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.1e-05 Score=60.90 Aligned_cols=175 Identities=13% Similarity=0.093 Sum_probs=92.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 012577 148 DVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDN 227 (460)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 227 (460)
++.+.+......-+......-...|+..|++++|++...... ..+ ....=...+.+..+++-|.+.+++|.+.+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE--~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLE--AAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHH--HHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344444443333332333333445666666666666655411 112 22222233445555666666666665432
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHH
Q 012577 228 LKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLK 307 (460)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 307 (460)
+..|.+.|..++. ......+.+.+|.-+|++|.++ ..|++.+.+....
T Consensus 168 ---ed~tLtQLA~awv----------------------------~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av 215 (299)
T KOG3081|consen 168 ---EDATLTQLAQAWV----------------------------KLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAV 215 (299)
T ss_pred ---hHHHHHHHHHHHH----------------------------HHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHH
Confidence 2344444443332 2222234567777777777764 4567777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhh-HHHHHHHHH
Q 012577 308 VYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEK-ADSILLKAQ 361 (460)
Q Consensus 308 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~ 361 (460)
++...|++++|..++++..... .-++.+...++..-...|...+ ..+.+.++.
T Consensus 216 ~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 216 CHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 7777778888887777777764 3455665555555555554433 344444443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.4e-06 Score=75.72 Aligned_cols=125 Identities=11% Similarity=-0.002 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcC-HHHHHHHH
Q 012577 230 EHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLS-TKHYTALL 306 (460)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li 306 (460)
+|+.+...|.-.|.-.|++++|.+.|+.... +| |...||.|...++...+.++|+..|++.++. +|+ +.+...|.
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlg 505 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLG 505 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhh
Confidence 4444555555555555556666655554433 33 3445666666666666666666666666653 222 23344455
Q ss_pred HHHHhcCCHHHHHHHHHHHHH---c------CCCCCHHHHHHHHHHHHcCCChhhHHHH
Q 012577 307 KVYADHKMLSKGKDLVKQMAE---S------GCHIGPLAWDALVKLHVEGGEVEKADSI 356 (460)
Q Consensus 307 ~~~~~~g~~~~a~~~~~~~~~---~------~~~~~~~~~~~li~~~~~~~~~~~a~~~ 356 (460)
-.|...|.+++|.+.|-..+. . +..++..+|..|=.++.-.++.|.+.+.
T Consensus 506 IS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 506 ISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 556666666666655544332 1 1122345555555555555555544443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-05 Score=68.82 Aligned_cols=195 Identities=13% Similarity=-0.000 Sum_probs=104.8
Q ss_pred CHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH--HHH
Q 012577 161 TQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD---SSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHR--WTC 235 (460)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 235 (460)
....+-.+...+...|+++.|...|+++.... +.+ ..++..+..++.+.|++++|...++++.+....... .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 44556667777888888888888888877653 222 245667777888888888888888888765432111 123
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCH
Q 012577 236 RLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKML 315 (460)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 315 (460)
..+..++... +...+...|+.++|.+.|+.+....+. +...+..+..... .
T Consensus 111 ~~~g~~~~~~------------------------~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~ 161 (235)
T TIGR03302 111 YLRGLSNYNQ------------------------IDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----L 161 (235)
T ss_pred HHHHHHHHHh------------------------cccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----H
Confidence 3333333222 000111224556666666666554322 1112211111000 0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012577 316 SKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKP-MFSSYMLIMDQYAKRGDIHSTEKIFH 394 (460)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 394 (460)
.. .. ......+...+.+.|++++|...++.+.+..+-.| ....+..+..++.+.|++++|..+++
T Consensus 162 ~~------~~--------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~ 227 (235)
T TIGR03302 162 RN------RL--------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAA 227 (235)
T ss_pred HH------HH--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 00 00 00011344456667777777777777666543323 23566667777777777777777766
Q ss_pred HHHHc
Q 012577 395 RMRQV 399 (460)
Q Consensus 395 ~m~~~ 399 (460)
.+...
T Consensus 228 ~l~~~ 232 (235)
T TIGR03302 228 VLGAN 232 (235)
T ss_pred HHHhh
Confidence 66543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.2e-05 Score=61.83 Aligned_cols=256 Identities=10% Similarity=0.061 Sum_probs=155.8
Q ss_pred HHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 012577 169 IDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKA 248 (460)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 248 (460)
++-+.-.|++..++..-...... +-+...-..+-++|...|++..... ++.... .|....+..+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchh
Confidence 44455567777666655554432 2334444445566776676554332 222222 33334444444444444444
Q ss_pred hHHHHH-HHHhccC--CCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012577 249 DQVARI-WKLCESN--PWL-DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQ 324 (460)
Q Consensus 249 ~~a~~~-~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 324 (460)
+....- .+.+... .+. .....-...|++.|++++|++...... +......=+..+.+..+++-|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433332 2333221 111 222223456788899999988887621 334444445666777888889999998
Q ss_pred HHHcCCCCCHHHHHHHHHHHHc----CCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 325 MAESGCHIGPLAWDALVKLHVE----GGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 325 ~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
|.+-. +..|.+.|..++.+ .+.+.+|.-+|+++.++ ..|+..+.+....++...|++++|..+++......
T Consensus 163 mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 163 MQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 88742 56677766666554 45688899999998664 45777888888888999999999999999998876
Q ss_pred CCccHHHHHHHHHHHHhcCCc---hhhhHHHHHhCCCCcCHHHHHHH
Q 012577 401 YVARFKQFQTLVQAYINAKTP---AYGIRDRMRADNVFPNKALAAQV 444 (460)
Q Consensus 401 ~~~~~~~~~~l~~~~~~~g~~---~~~~~~~m~~~~~~p~~~~~~~l 444 (460)
..++.+...++.+-...|+. ....+.+.+. ..|+.....-+
T Consensus 238 -~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~--~~p~h~~vk~~ 281 (299)
T KOG3081|consen 238 -AKDPETLANLIVLALHLGKDAEVTERNLSQLKL--SHPEHPFVKHL 281 (299)
T ss_pred -CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh--cCCcchHHHHH
Confidence 55778888888888888875 3334444443 34555444433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.6e-06 Score=78.34 Aligned_cols=235 Identities=11% Similarity=0.029 Sum_probs=180.2
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012577 164 SYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYA 243 (460)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 243 (460)
.-..+...+...|-..+|..+|++.. .|.-++.+|+..|+..+|..+..+-.+ -+||+..|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc
Confidence 34456778888999999999998765 567788899999999999999988877 3678889999988888
Q ss_pred hcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012577 244 ELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVK 323 (460)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 323 (460)
...-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+..+- ...+|-.+..+..+.+++..|.+.|.
T Consensus 469 d~s~yEkawElsn~~sar----A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR----AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred ChHHHHHHHHHhhhhhHH----HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHH
Confidence 887888898888764322 1122222334478999999999977765432 66788888888999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C
Q 012577 324 QMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGY-V 402 (460)
Q Consensus 324 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~ 402 (460)
.-.... +-+...||.+-.+|.+.++-.+|...+.++.+-+ .-+...|...+-...+.|.+++|++.+.++..... .
T Consensus 544 rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn--~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 544 RCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN--YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred HHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC--CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 887752 4467899999999999999999999999997754 33345777788888999999999999998875321 1
Q ss_pred ccHHHHHHHHHHHHh
Q 012577 403 ARFKQFQTLVQAYIN 417 (460)
Q Consensus 403 ~~~~~~~~l~~~~~~ 417 (460)
-|..+...++....+
T Consensus 621 ~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 621 KDDEVLLIIVRTVLE 635 (777)
T ss_pred ccchhhHHHHHHHHh
Confidence 255555555555443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.8e-06 Score=69.83 Aligned_cols=145 Identities=15% Similarity=0.073 Sum_probs=80.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcccCcCH--HHHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCHHH
Q 012577 267 CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLST--KHYTALLKVYAD--------HKMLSKGKDLVKQMAESGCHIGPLA 336 (460)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~ 336 (460)
+..+..++...|++++|...++.+.+..+.... .++..+..++.. .|++++|.+.++.+.+.. +-+...
T Consensus 73 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~ 151 (235)
T TIGR03302 73 QLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYA 151 (235)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhH
Confidence 344445555555555555555555543321111 123333333333 266778888888877652 222222
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCccHHHHHHHHHH
Q 012577 337 WDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG--YVARFKQFQTLVQA 414 (460)
Q Consensus 337 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~ 414 (460)
+..+..... . .... . .....+...+.+.|++++|...+++..+.. -+.....+..+..+
T Consensus 152 ~~a~~~~~~----~------~~~~-~--------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~ 212 (235)
T TIGR03302 152 PDAKKRMDY----L------RNRL-A--------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEA 212 (235)
T ss_pred HHHHHHHHH----H------HHHH-H--------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHH
Confidence 222211100 0 0000 0 011245667899999999999999998763 12345789999999
Q ss_pred HHhcCC--chhhhHHHHHh
Q 012577 415 YINAKT--PAYGIRDRMRA 431 (460)
Q Consensus 415 ~~~~g~--~~~~~~~~m~~ 431 (460)
+.+.|+ .+..+++.+..
T Consensus 213 ~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 213 YLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 999999 45555555443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00032 Score=64.24 Aligned_cols=284 Identities=11% Similarity=0.098 Sum_probs=142.7
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCC-------------CCCChhh-hHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHH-
Q 012577 101 ANCVAGNNVKKAEEVFNRMKDKG-------------FPVTSFA-CNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFS- 164 (460)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~m~~~g-------------~~~~~~~-~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~- 164 (460)
..++..|++.+|+++++...+.+ +.-+..+ --.+...+-..|+ .+|..++....+.. ++|...
T Consensus 183 c~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~ 261 (652)
T KOG2376|consen 183 CILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSL 261 (652)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHH
Confidence 34667899999999998873221 0001111 1223335556677 88999898888875 455432
Q ss_pred ---HHHHHHHHhhcCChh-HHHHHHHHHHh-----------CCCCCCHHHHH-HHHHHHHhCCChHHHHHHHHHHHhCCC
Q 012577 165 ---YKILIDIKGQSNDLT-GMDQVVEAMKS-----------EGIEPDSSTQA-ILAKHYVSGGRKEKAEAMLKEMEGDNL 228 (460)
Q Consensus 165 ---~~~li~~~~~~~~~~-~a~~~~~~m~~-----------~g~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~ 228 (460)
-|.|+..-....-++ .++..++.... .. .......| .++..|. +.-+.+.++..... +.
T Consensus 262 Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~-qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp--~~ 336 (652)
T KOG2376|consen 262 AVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK-QKQAIYRNNALLALFT--NKMDQVRELSASLP--GM 336 (652)
T ss_pred HHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHh--hhHHHHHHHHHhCC--cc
Confidence 233332211111111 11222211111 00 11112222 2333332 33344444333322 22
Q ss_pred CCCHHHHHHHHHHHHh--cCChhHHHHHHHHhcc-CCC--HHHHHHHHHHHHccCCHHHHHHHHH--------HHHhccc
Q 012577 229 KEHRWTCRLLLPLYAE--LGKADQVARIWKLCES-NPW--LDVCMAAIEAWGKLNKVEEAEAVFK--------RMSKTWK 295 (460)
Q Consensus 229 ~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~-~~~--~~~~~~li~~~~~~~~~~~a~~~~~--------~m~~~~~ 295 (460)
.|. ..+..++..+.+ ......+..++..... .|. ..+...++......|+++.|.+++. .+.+.+.
T Consensus 337 ~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~ 415 (652)
T KOG2376|consen 337 SPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH 415 (652)
T ss_pred Cch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc
Confidence 222 333344333322 2235555555555443 332 2344555666777788888888777 4444443
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHH----HHHHHHcCCChhhHHHHHHHHHHhCCCCcC
Q 012577 296 KLSTKHYTALLKVYADHKMLSKGKDLVKQMAES--GCHIGPLAWDA----LVKLHVEGGEVEKADSILLKAQQQNKFKPM 369 (460)
Q Consensus 296 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~----li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 369 (460)
.| .+...+...+.+.++-+.|..++.+.... .-.+......+ +...-.+.|+-++|..+++++.+.+ .+|
T Consensus 416 ~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n--~~d 491 (652)
T KOG2376|consen 416 LP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN--PND 491 (652)
T ss_pred Ch--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC--Cch
Confidence 33 44555666666666666666666665431 11122233333 3333345678888888888877654 366
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012577 370 FSSYMLIMDQYAKRGDIHSTEKIFHRM 396 (460)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~a~~~~~~m 396 (460)
..+...++.+|++. +++.|..+-+.+
T Consensus 492 ~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 492 TDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 67777777777765 466666665544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.1e-05 Score=73.87 Aligned_cols=133 Identities=13% Similarity=0.125 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHcc
Q 012577 198 STQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKL 277 (460)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~ 277 (460)
..+..+..+|-+.|+.++|..+|+++.+.++ -|+.+.|.+...|+.. ++++|.+++... +..+...
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA~~m~~KA------------V~~~i~~ 182 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKAITYLKKA------------IYRFIKK 182 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHHHHHHHHH------------HHHHHhh
Confidence 3444455555555555555555555555442 2444455555555544 555555544432 2223333
Q ss_pred CCHHHHHHHHHHHHhccc-------------------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 012577 278 NKVEEAEAVFKRMSKTWK-------------------KLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWD 338 (460)
Q Consensus 278 ~~~~~a~~~~~~m~~~~~-------------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 338 (460)
+++..+.++|..+....+ .--..++-.+-..|-..++++++..+++.+.+.. +-|.....
T Consensus 183 kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~ 261 (906)
T PRK14720 183 KQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKARE 261 (906)
T ss_pred hcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHH
Confidence 344444444444443211 1122334444445555555666666666666543 23444444
Q ss_pred HHHHHHH
Q 012577 339 ALVKLHV 345 (460)
Q Consensus 339 ~li~~~~ 345 (460)
-++.+|.
T Consensus 262 ~l~~~y~ 268 (906)
T PRK14720 262 ELIRFYK 268 (906)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.3e-06 Score=63.86 Aligned_cols=122 Identities=11% Similarity=-0.105 Sum_probs=84.2
Q ss_pred HHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhC
Q 012577 285 AVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 285 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
.+++...+. ++..+..+...+...|++++|...|+...... +.+...+..+..++.+.|++++|...|+.+.+..
T Consensus 14 ~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 444544443 23335556777778888888888888887764 4577778888888888888888888888887654
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 012577 365 KFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQA 414 (460)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 414 (460)
+ .+...+..+..++.+.|++++|+..|++..+.. +.+...|...-.+
T Consensus 89 p--~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~~ 135 (144)
T PRK15359 89 A--SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEIRQNA 135 (144)
T ss_pred C--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3 345677777778888888888888888887754 4444445444333
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.2e-05 Score=62.78 Aligned_cols=155 Identities=13% Similarity=0.032 Sum_probs=86.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCCHHHHHHHHHHHHccC
Q 012577 201 AILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES--NPWLDVCMAAIEAWGKLN 278 (460)
Q Consensus 201 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~ 278 (460)
..+-..+...|+-+....+........ +-|.......+....+.|++..|...+.+... .+|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 444445555555555555554433221 12333444455555556666666555555443 345556666666666666
Q ss_pred CHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHH
Q 012577 279 KVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILL 358 (460)
Q Consensus 279 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 358 (460)
+++.|..-|.+..+..+. +...++.+.-.|.-.|+.+.|..++......+ .-|...-..+.......|++++|..+..
T Consensus 149 r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 666666666666554332 44556666666666666666666666666543 2255555556666666666666666544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.9e-05 Score=62.99 Aligned_cols=157 Identities=15% Similarity=0.078 Sum_probs=85.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcC
Q 012577 236 RLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHK 313 (460)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 313 (460)
..+-..+...|+-+....+...... .| +.......+....+.|++..|...+++..... ++|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 3444555555555555555544332 22 33334445555666666666666666665543 236666666666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012577 314 MLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIF 393 (460)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 393 (460)
+++.|..-|.+..+. .+-++...+.+...+.-.|+.+.|..++....... .-|...-..+.-.....|++++|..+.
T Consensus 149 r~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 666666666666554 23344555555555666666666666666554321 123344455555556666666666555
Q ss_pred HHH
Q 012577 394 HRM 396 (460)
Q Consensus 394 ~~m 396 (460)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 433
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.0013 Score=64.31 Aligned_cols=161 Identities=11% Similarity=0.063 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHh
Q 012577 232 RWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYAD 311 (460)
Q Consensus 232 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 311 (460)
+..|+.+..+-.+.|...+|.+-|-+ ..|+..|..+++...+.|.+++-.+++...++....|. .=+.||-+|++
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik---adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAk 1178 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK---ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAK 1178 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh---cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHH
Confidence 35677777777777777777765543 34666777788888888888888887777766655443 34567777888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 012577 312 HKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEK 391 (460)
Q Consensus 312 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 391 (460)
.++..+..+++ ..||..-...+..-|...|.++.|.-+|... ..|..|...++..|+++.|..
T Consensus 1179 t~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v----------SN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1179 TNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV----------SNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred hchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHH
Confidence 77776655543 2367777777777777777777776665533 356667777777777777765
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 012577 392 IFHRMRQVGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 392 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
.-++. .+..||..+-.+|...++
T Consensus 1242 ~aRKA------ns~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1242 AARKA------NSTKTWKEVCFACVDKEE 1264 (1666)
T ss_pred Hhhhc------cchhHHHHHHHHHhchhh
Confidence 54432 245677777777766554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00014 Score=68.35 Aligned_cols=188 Identities=13% Similarity=0.079 Sum_probs=132.1
Q ss_pred HhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 012577 139 KRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAE 217 (460)
Q Consensus 139 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 217 (460)
..... .+|..+++.+.... .-..-|..+.+.|...|+++.|.++|-+.- .++-.|.+|.+.|+|+.|.
T Consensus 743 i~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHH
Confidence 33344 78888888887653 334457788899999999999999986532 3456678899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCc
Q 012577 218 AMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKL 297 (460)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 297 (460)
++-.+. .|.......|-+-..-+-..|++.+|.+++-.+. .|+. -|.+|-+.|..++.+++..+-... .
T Consensus 812 kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~-~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~ 880 (1636)
T KOG3616|consen 812 KLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---H 880 (1636)
T ss_pred HHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-CchH-----HHHHHHhhCcchHHHHHHHHhChh---h
Confidence 887665 3445556667777777788899999988876543 2332 367788888888888777654322 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHH
Q 012577 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSIL 357 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 357 (460)
-..|...+..-|...|++..|..-|-+..+ |.+-+.+|-..+.+++|.++-
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 234566677778888888888876655432 455666677777777776664
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.001 Score=63.62 Aligned_cols=226 Identities=14% Similarity=0.103 Sum_probs=136.1
Q ss_pred HHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccC-----------CCchhHHHHHHHH
Q 012577 34 LRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPES-----------FRGEVVYRTLLAN 102 (460)
Q Consensus 34 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~ll~~ 102 (460)
+...|+-+.|.+-.+.+. +...|..+.++|.+..+++-|.-.+-.|... .++ ..-....-.
T Consensus 738 yvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 345577777766665543 3457888888898888888888877776542 111 111111222
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHH
Q 012577 103 CVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGM 181 (460)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 181 (460)
....|.+++|..+|.+-++. ..|=..|...|. ++|.++-+.--+. --..||......+-..+|++.|
T Consensus 810 AieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHH
Confidence 34668888888888876653 233345555666 6666554432221 1124566666667777888888
Q ss_pred HHHHHHHHh----------CC---------CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012577 182 DQVVEAMKS----------EG---------IEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLY 242 (460)
Q Consensus 182 ~~~~~~m~~----------~g---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 242 (460)
++.|++... .. -..|...|.-...-.-..|+.|.|+.+|....+ |-.+++..
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~ 948 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK 948 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence 888765321 10 012233344444444456677777777665543 33455666
Q ss_pred HhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 012577 243 AELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMS 291 (460)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 291 (460)
+-.|+.++|-++-++ ..|...+-.+...|-..|++.+|..+|.+..
T Consensus 949 C~qGk~~kAa~iA~e---sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEE---SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeccCchHHHHHHHh---cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 667777777766554 4566667777888888888888888887654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.0004 Score=67.52 Aligned_cols=367 Identities=12% Similarity=-0.014 Sum_probs=209.6
Q ss_pred chhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHHHHcCCCHHHHHHHHHH
Q 012577 40 YGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLANCVAGNNVKKAEEVFNR 118 (460)
Q Consensus 40 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 118 (460)
...|+..|=...+.. +.-...|..+...|....+...|.+.|++.-+..+ +...+......|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 455555554443332 22345788899999988899999999999877633 567788999999999999999998333
Q ss_pred HHhCCCCCChhhhHHHHH--HHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCC
Q 012577 119 MKDKGFPVTSFACNQLLI--LYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEP 195 (460)
Q Consensus 119 m~~~g~~~~~~~~~~ll~--~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 195 (460)
--+.. +.-...+|..-. .|...++ ..+..-|+...+.. +.|...|..+..+|..+|.+..|.++|.+.... .|
T Consensus 552 ~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 552 AAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred Hhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 22221 112223333322 3444444 66667777666654 557789999999999999999999999988765 34
Q ss_pred CH-HHHHHHHHHHHhCCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhc-------c-
Q 012577 196 DS-STQAILAKHYVSGGRKEKAEAMLKEMEGDN------LKEHRWTCRLLLPLYAELGKADQVARIWKLCE-------S- 260 (460)
Q Consensus 196 ~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~- 260 (460)
+. ..---....-+..|.+.+|...+....... ..--..++..+...+.-.|-..++...++.-. .
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 32 222222234567788999988887765421 11111233333333333333333333333211 1
Q ss_pred --CCCHHHHHHHHHH-------------------HH----ccCCH---H---HHHHHHHHHHhcccCcCHHHHHHHHHHH
Q 012577 261 --NPWLDVCMAAIEA-------------------WG----KLNKV---E---EAEAVFKRMSKTWKKLSTKHYTALLKVY 309 (460)
Q Consensus 261 --~~~~~~~~~li~~-------------------~~----~~~~~---~---~a~~~~~~m~~~~~~p~~~~~~~li~~~ 309 (460)
..+...|-.+-++ +. ..+.. + -+.+.+-.-.+ ...+..+|..++..|
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINY 785 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHH
Confidence 0111111111111 11 11111 1 11111111111 112344555555444
Q ss_pred Hh------c--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012577 310 AD------H--KMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYA 381 (460)
Q Consensus 310 ~~------~--g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (460)
.+ . .+...|...+...++. ...+..+|+.|... ...|++.-|...|-+..... +....+|..+...+.
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L-~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se--p~~~~~W~NlgvL~l 861 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSL-CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE--PTCHCQWLNLGVLVL 861 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHH-hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc--ccchhheeccceeEE
Confidence 43 1 2233566666666654 24567777777665 56677777777776554332 334567777777888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 012577 382 KRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAK 419 (460)
Q Consensus 382 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 419 (460)
+..+++.|...|.+.+... |.|...|-.........|
T Consensus 862 ~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG 898 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVG 898 (1238)
T ss_pred ecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHH
Confidence 8889999999999888765 545555544333333333
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.2e-05 Score=62.19 Aligned_cols=95 Identities=12% Similarity=0.039 Sum_probs=39.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVY-ADHKM--LSKGKDLVKQMAESGCHIGPLAWDALVK 342 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~li~ 342 (460)
.|..+...|...|++++|...|+...+..+. +...+..+..++ ...|+ .++|..++++..+.+ +-+...+..+..
T Consensus 75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~ 152 (198)
T PRK10370 75 QWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLAS 152 (198)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHH
Confidence 3444444444444444444444444443222 333333333332 33333 244444444444432 223344444444
Q ss_pred HHHcCCChhhHHHHHHHHHH
Q 012577 343 LHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~ 362 (460)
.+.+.|++++|+..|+++.+
T Consensus 153 ~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 153 DAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 44444444444444444443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00015 Score=70.75 Aligned_cols=143 Identities=13% Similarity=0.153 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC-HHHHHHHH
Q 012577 194 EPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NPW-LDVCMAAI 271 (460)
Q Consensus 194 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~li 271 (460)
..+...+-.|.....+.|++++|..+++...+..+. +......+...+.+.+++++|....++... .|+ ......+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 344666666666666666666666666666654322 234445556666666666666666665544 343 33445555
Q ss_pred HHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 012577 272 EAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDA 339 (460)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (460)
.++.+.|++++|..+|++....+.. +..++..+...+...|+.++|...|+...+. ..+....|+.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~ 227 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTR 227 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHH
Confidence 5666666666666666666653322 3556666666666666666666666666554 2333344443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.4e-06 Score=63.46 Aligned_cols=103 Identities=10% Similarity=-0.066 Sum_probs=84.4
Q ss_pred CCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHH
Q 012577 19 GNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYR 97 (460)
Q Consensus 19 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~ 97 (460)
....+|+.+......+...|++++|+..|+...... |.+...+..+...+...|++++|...|+......| +...+.
T Consensus 19 al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~ 96 (144)
T PRK15359 19 LLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVY 96 (144)
T ss_pred HHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence 334566667777788888999999999999888775 56777888888999999999999999999777644 567888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCC
Q 012577 98 TLLANCVAGNNVKKAEEVFNRMKDKG 123 (460)
Q Consensus 98 ~ll~~~~~~~~~~~a~~~~~~m~~~g 123 (460)
.+..++.+.|++++|...|+...+..
T Consensus 97 ~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 97 QTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88888999999999999999988763
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00014 Score=69.04 Aligned_cols=234 Identities=14% Similarity=0.111 Sum_probs=123.2
Q ss_pred HHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHH
Q 012577 70 IAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADV 149 (460)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~ 149 (460)
|..-|+.+.|.+-.+.+ .+..+|..+.+.|.+.++.+-|.-.+..|.... ..+.
T Consensus 738 yvtiG~MD~AfksI~~I----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aR----------------------gaRA 791 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNAR----------------------GARA 791 (1416)
T ss_pred EEEeccHHHHHHHHHHH----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhh----------------------hHHH
Confidence 45568888888877777 456789999999999998888888887776431 1112
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC
Q 012577 150 LLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLK 229 (460)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 229 (460)
+++..+.| + .+=.-+.-.....|.+++|..+|.+-++. ..|=..|-..|.+++|.++-+.--+..+.
T Consensus 792 lR~a~q~~---~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr 858 (1416)
T KOG3617|consen 792 LRRAQQNG---E-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLR 858 (1416)
T ss_pred HHHHHhCC---c-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehh
Confidence 22222221 1 00011111223445555555555554422 12223344455555555544332222221
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-----------C-----------CCHHHHHHHHHHHHccCCHHHHHHHH
Q 012577 230 EHRWTCRLLLPLYAELGKADQVARIWKLCES-----------N-----------PWLDVCMAAIEAWGKLNKVEEAEAVF 287 (460)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~-----------~~~~~~~~li~~~~~~~~~~~a~~~~ 287 (460)
.||..-..-+...++.+.|++.|++... . .+...|.--...+-..|+.+.|+.+|
T Consensus 859 ---~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 859 ---NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFY 935 (1416)
T ss_pred ---hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHH
Confidence 3444444444445555555554443211 1 11122222223333467777777777
Q ss_pred HHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHH
Q 012577 288 KRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKA 360 (460)
Q Consensus 288 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 360 (460)
..... |-+++...|-.|+.++|-.+-++ . -|....-.+.+.|-..|++.+|..+|-++
T Consensus 936 ~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e---s---gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 936 SSAKD---------YFSMVRIKCIQGKTDKAARIAEE---S---GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHhhh---------hhhheeeEeeccCchHHHHHHHh---c---ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 65443 55566666666777776665443 2 25555666777777777777777776655
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00031 Score=63.00 Aligned_cols=105 Identities=19% Similarity=0.208 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD-SSTQAILAKHYVSGGRKEKAEAMLKE 222 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (460)
++|...++.+...- +-|...+....+.+.+.++.++|.+.++++... .|+ ...+-.+..++.+.|++.+|+++++.
T Consensus 323 d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~ 399 (484)
T COG4783 323 DEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNR 399 (484)
T ss_pred chHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 44444444444331 223333333344445555555555555554444 232 33334444445555555555555544
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 012577 223 MEGDNLKEHRWTCRLLLPLYAELGKADQVA 252 (460)
Q Consensus 223 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 252 (460)
...... -|+..|..|..+|...|+..++.
T Consensus 400 ~~~~~p-~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 400 YLFNDP-EDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HhhcCC-CCchHHHHHHHHHHHhCchHHHH
Confidence 444322 24444555555555555444444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.0013 Score=59.82 Aligned_cols=381 Identities=11% Similarity=0.107 Sum_probs=219.6
Q ss_pred CCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCc-hhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHH
Q 012577 57 DFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRG-EVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLL 135 (460)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 135 (460)
|.|..+|+.+|+-+... .++++++.++++....|+ ...|..-|..-.+..+++.+.++|.+.+..- .+...|...+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 66888999999988766 999999999999988775 5789999999999999999999999988763 3566677777
Q ss_pred HHHHhcCc------hHHHHHHHH-HHHcCCCCCH-HHHHHHHHH---------HhhcCChhHHHHHHHHHHhCCCCC---
Q 012577 136 ILYKRLDK------KKVADVLLL-MEKENVKLTQ-FSYKILIDI---------KGQSNDLTGMDQVVEAMKSEGIEP--- 195 (460)
Q Consensus 136 ~~~~~~~~------~~a~~~~~~-~~~~~~~~~~-~~~~~li~~---------~~~~~~~~~a~~~~~~m~~~g~~~--- 195 (460)
.--.+.+. ....+.|+- +.+.|+.+-. ..|+..+.. +....+++...++|+++...-+..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 64443332 233344443 3344544432 234444433 334456677888888887642111
Q ss_pred ---CHHHHHHHHHHH-------HhCCChHHHHHHHHHHHh--CCCCCCHHH---------------HHHHHHHHHhcCCh
Q 012577 196 ---DSSTQAILAKHY-------VSGGRKEKAEAMLKEMEG--DNLKEHRWT---------------CRLLLPLYAELGKA 248 (460)
Q Consensus 196 ---~~~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~~---------------~~~l~~~~~~~~~~ 248 (460)
|-..|..=|+.. -+...+..|.+++++... .|......+ |..+|.-= +.+-+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE-ksNpL 252 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE-KSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH-hcCCc
Confidence 112222222211 123446677777777653 232211111 11111110 00000
Q ss_pred h---------HHHHHHHHhcc----CCCHH-HHH----HHHHHHHccCC-------HHHHHHHHHHHHhcccCcCHHHHH
Q 012577 249 D---------QVARIWKLCES----NPWLD-VCM----AAIEAWGKLNK-------VEEAEAVFKRMSKTWKKLSTKHYT 303 (460)
Q Consensus 249 ~---------~a~~~~~~~~~----~~~~~-~~~----~li~~~~~~~~-------~~~a~~~~~~m~~~~~~p~~~~~~ 303 (460)
. ...-.++.+.. .|++- -+. ..-+.+...|+ -+++..+++.....-..-+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00001111100 11110 000 11122233333 334555555444332222333444
Q ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCc-CHHHHHHHHHH
Q 012577 304 ALLKVYADHK---MLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKP-MFSSYMLIMDQ 379 (460)
Q Consensus 304 ~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~ 379 (460)
.+.+.--..- ..+.....++++...-..--.-+|-.++..--+...+..|..+|.++.+.. ..+ ++..+++++..
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~-r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDK-RTRHHVFVAAALMEY 411 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhcc-CCcchhhHHHHHHHH
Confidence 3333222222 255666677776653222223567778888888899999999999997654 444 77778888877
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHHhCCCCcCH--HHHHHH
Q 012577 380 YAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMRADNVFPNK--ALAAQV 444 (460)
Q Consensus 380 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~--~~~~~l 444 (460)
++. ++.+-|.++|+--.+. +..++.--...++-+...++ .+.++|++....++.|+. .+|..+
T Consensus 412 ~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~ 478 (656)
T KOG1914|consen 412 YCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRM 478 (656)
T ss_pred Hhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHH
Confidence 765 6889999999965554 24445555667777777777 789999999988777664 566665
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0007 Score=60.83 Aligned_cols=138 Identities=17% Similarity=0.070 Sum_probs=77.1
Q ss_pred HHHhcCChhHHHHHHHHhcc-CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHH
Q 012577 241 LYAELGKADQVARIWKLCES-NPW-LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKG 318 (460)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 318 (460)
.+...|+++.|+..++.+.. .|+ ...+....+.+.+.|+.++|.+.++.+....+. .....-.+..+|.+.|++.+|
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHH
Confidence 34455666666666665443 333 333344455666666666666666666654322 144445556666666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 319 KDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
..+++..... .+-|+..|..|.++|...|+..++.....+ .|...|+++.|...+....+
T Consensus 394 i~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE-------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 394 IRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE-------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH-------------------HHHhCCCHHHHHHHHHHHHH
Confidence 6666665554 255666666666666666666555544322 23345666666666666655
Q ss_pred c
Q 012577 399 V 399 (460)
Q Consensus 399 ~ 399 (460)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 4
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00031 Score=68.69 Aligned_cols=182 Identities=8% Similarity=0.038 Sum_probs=125.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHH
Q 012577 228 LKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NPW-LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTAL 305 (460)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 305 (460)
...+...+..|.....+.|.+++|..+++.+.+ .|+ ......+...+.+.+++++|....++.....+. +......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 444577777888888888888888888887766 554 446677778888888888888888888876554 66667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 012577 306 LKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGD 385 (460)
Q Consensus 306 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (460)
..++.+.|++++|..+|+++...+ +-+..++.++...+...|+.++|...|++..+..+ |...-|+.++ ++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~--~~~~~~~~~~------~~ 231 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG--DGARKLTRRL------VD 231 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC--cchHHHHHHH------HH
Confidence 788888888888888888888743 44577888888888888888888888888876543 4444444433 23
Q ss_pred HHHHHHHHHHHHHc----CCCccHHHHHHHHHHHHhcC
Q 012577 386 IHSTEKIFHRMRQV----GYVARFKQFQTLVQAYINAK 419 (460)
Q Consensus 386 ~~~a~~~~~~m~~~----~~~~~~~~~~~l~~~~~~~g 419 (460)
+..-...++++.-. |.+....+....|.-|.+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRR 269 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence 33444555555432 33334455566666555543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00067 Score=55.57 Aligned_cols=159 Identities=12% Similarity=0.120 Sum_probs=90.4
Q ss_pred HHHHHHhcCChhHHHHHHHHhcc-CCCHHHHHHH-HHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCH
Q 012577 238 LLPLYAELGKADQVARIWKLCES-NPWLDVCMAA-IEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKML 315 (460)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 315 (460)
++-+....|+.+.|...++.+.. .|...-...+ .--+-..|++++|+++++...+.++. |.+++.--+...-..|+-
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCc
Confidence 33344445555555555555433 1211111111 11123356677777777777766543 566666556666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc---CCHHHHHHH
Q 012577 316 SKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKR---GDIHSTEKI 392 (460)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~ 392 (460)
-+|++-+....+. +..|...|.-+...|...|++++|.-.+++++-..|+.| ..+..+...+.-. .+.+.|.++
T Consensus 137 l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~--l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 137 LEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP--LYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred HHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6777666666665 566777777777777777777777777777765443322 3344444443322 255667777
Q ss_pred HHHHHHcC
Q 012577 393 FHRMRQVG 400 (460)
Q Consensus 393 ~~~m~~~~ 400 (460)
|.+..+..
T Consensus 214 y~~alkl~ 221 (289)
T KOG3060|consen 214 YERALKLN 221 (289)
T ss_pred HHHHHHhC
Confidence 77777653
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.9e-05 Score=59.01 Aligned_cols=97 Identities=14% Similarity=0.050 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012577 300 KHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQ 379 (460)
Q Consensus 300 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (460)
.....+...+...|++++|...++.+...+ +.+...+..+...+.+.|++++|..+++...+.. ..+...+..+...
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHH
Confidence 344455556666666666666666666543 3455666666666666666666666666665433 2234455555666
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 012577 380 YAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 380 ~~~~g~~~~a~~~~~~m~~~ 399 (460)
+...|++++|...|++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66667777777777666664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0015 Score=59.30 Aligned_cols=102 Identities=8% Similarity=-0.095 Sum_probs=72.3
Q ss_pred HHHHHhhCHHHHHHHHHhcccC-CCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-hhhhHHHHHHHHhcCc-h
Q 012577 68 DLIAKLRGLQKAESYIQKIPES-FRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVT-SFACNQLLILYKRLDK-K 144 (460)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~-~ 144 (460)
++....|+++.|..+|.+.... +++.+.|..-..+|+..|++++|++=-.+-++. .|+ +..|+-...++.-.|+ +
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 4456678888888888876554 456777888888888888888887766665554 455 4466666666666677 8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012577 145 KVADVLLLMEKENVKLTQFSYKILIDIK 172 (460)
Q Consensus 145 ~a~~~~~~~~~~~~~~~~~~~~~li~~~ 172 (460)
+|...|.+-.+.. +-|...++.+.+++
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 8888887776653 44566677777776
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.1e-06 Score=49.25 Aligned_cols=35 Identities=29% Similarity=0.488 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh
Q 012577 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTS 128 (460)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 128 (460)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36899999999999999999999999999998874
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0011 Score=54.34 Aligned_cols=164 Identities=16% Similarity=0.082 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHhhCHHHHHHHHHhcccCCCchh-HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHh
Q 012577 62 DYASCLDLIAKLRGLQKAESYIQKIPESFRGEV-VYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKR 140 (460)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 140 (460)
.|..++-+....|+.+.|..+++.+...+|.+. +-..-.--+-..|++++|.++++.+++.+ |.|..++--=+.....
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 355666777788999999999999887765432 21111122445789999999999999886 4566666655555555
Q ss_pred cCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC---ChHHH
Q 012577 141 LDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGG---RKEKA 216 (460)
Q Consensus 141 ~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~---~~~~a 216 (460)
.|. .+|.+-+....+. +.-|...|.-+...|...|++++|.-+++++.-.. |.+...+..+...+.-.| +...+
T Consensus 133 ~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 666 6677666665554 36788999999999999999999999999998663 445555556665554443 46678
Q ss_pred HHHHHHHHhCCC
Q 012577 217 EAMLKEMEGDNL 228 (460)
Q Consensus 217 ~~~~~~~~~~~~ 228 (460)
.++|.+..+...
T Consensus 211 rkyy~~alkl~~ 222 (289)
T KOG3060|consen 211 RKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHhCh
Confidence 888888877543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.9e-06 Score=47.96 Aligned_cols=33 Identities=27% Similarity=0.557 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 012577 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPV 126 (460)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~ 126 (460)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.6e-06 Score=47.75 Aligned_cols=33 Identities=21% Similarity=0.440 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 012577 372 SYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVAR 404 (460)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 404 (460)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00011 Score=56.47 Aligned_cols=98 Identities=15% Similarity=0.023 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012577 265 DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLH 344 (460)
Q Consensus 265 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 344 (460)
.....+...+...|++++|.+.|+.....+.. +...+..+...+...|++++|...++...+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 34556667777788888888888887775543 66777788888888888888888888877764 55677777778888
Q ss_pred HcCCChhhHHHHHHHHHHhC
Q 012577 345 VEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~ 364 (460)
...|++++|...|+...+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 96 LALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 88888888888888877654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.20 E-value=3e-06 Score=47.12 Aligned_cols=33 Identities=24% Similarity=0.473 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 012577 371 SSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVA 403 (460)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 403 (460)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 477888888888888888888888888877766
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0002 Score=55.65 Aligned_cols=122 Identities=14% Similarity=0.118 Sum_probs=57.6
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH--HHHHHHH
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD---SSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHR--WTCRLLL 239 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~ 239 (460)
|..++..+ ..++...+.+.++.+.... +.+ ....-.+...+...|++++|...|+........|.. .....+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344433 3566666666666666542 222 122233445556666666666666666665422211 1222344
Q ss_pred HHHHhcCChhHHHHHHHHhccCC-CHHHHHHHHHHHHccCCHHHHHHHHH
Q 012577 240 PLYAELGKADQVARIWKLCESNP-WLDVCMAAIEAWGKLNKVEEAEAVFK 288 (460)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~ 288 (460)
..+...|++++|+..++.....+ ....+....+.|.+.|+.++|...|+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44555555555555554432211 12233344445555555555555544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0031 Score=61.68 Aligned_cols=178 Identities=11% Similarity=0.023 Sum_probs=117.7
Q ss_pred HHHHHHHHHhcccCCCc-hhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHH
Q 012577 76 LQKAESYIQKIPESFRG-EVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLM 153 (460)
Q Consensus 76 ~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~ 153 (460)
...|...|-+..+..++ ...|..|...|....+...|.+.|++..+.. ..|..........|++... +.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 44444444443332232 4668888888888778888888888888764 3366777778888888877 7776663222
Q ss_pred HHcCCCCC--HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC
Q 012577 154 EKENVKLT--QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEH 231 (460)
Q Consensus 154 ~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 231 (460)
-+.. +.- ..-|-...-.|.+.++...|..-|+...+.. +.|...|..++.+|...|++..|.++|.+.... .|+
T Consensus 553 ~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~ 628 (1238)
T KOG1127|consen 553 AQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL 628 (1238)
T ss_pred hhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence 2111 111 1123334445778888888888888888765 567888999999999999999999999887664 333
Q ss_pred HHHHHHH--HHHHHhcCChhHHHHHHHHhc
Q 012577 232 RWTCRLL--LPLYAELGKADQVARIWKLCE 259 (460)
Q Consensus 232 ~~~~~~l--~~~~~~~~~~~~a~~~~~~~~ 259 (460)
. +|... ...-+..|.+.++...+..+.
T Consensus 629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 629 S-KYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred h-HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2 33322 234456788888888776543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.9e-05 Score=66.57 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=83.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 012577 96 YRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQ 174 (460)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 174 (460)
-..|+..+...++++.|..+|+++.+.. |+ ....+...+...+. .+|.+++++..+.. +.+......-.+.+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3456666777788888888888888764 33 33345555555555 67777777666542 4455566666667777
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012577 175 SNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEME 224 (460)
Q Consensus 175 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (460)
.++++.|+++.+++.... +-+-.+|..|..+|.+.|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 788888888888777663 3345577778888888888888877777654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0002 Score=64.63 Aligned_cols=123 Identities=12% Similarity=0.107 Sum_probs=74.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 012577 268 MAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG 347 (460)
Q Consensus 268 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 347 (460)
.+++..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|.+++++..+. .+-+......-...|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 344555555666666777776666653 22 3334556666666666666666666654 234555555555666666
Q ss_pred CChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012577 348 GEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMR 397 (460)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 397 (460)
++++.|.++.+++.+.. +-+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777776665532 2234566677777777777777776666554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00026 Score=52.98 Aligned_cols=107 Identities=9% Similarity=0.002 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCc-CHHHHHHHH
Q 012577 301 HYTALLKVYADHKMLSKGKDLVKQMAESGC--HIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKP-MFSSYMLIM 377 (460)
Q Consensus 301 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~ 377 (460)
++..++..+.+.|++++|.+.+..+.+..- +.....+..+...+.+.|+++.|...|+.+....+-.+ ....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 455666677777777777777777766421 11134555677777777888888888877766543222 134566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 012577 378 DQYAKRGDIHSTEKIFHRMRQVGYVARFKQF 408 (460)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 408 (460)
.++.+.|++++|.+.++++.+.. +.+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY-PGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC-cCChhHH
Confidence 77777788888888888777764 4444433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00013 Score=63.56 Aligned_cols=146 Identities=15% Similarity=0.211 Sum_probs=97.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYAD-HKMLSKGKDLVKQMAESGCHIGPLAWDALVKLH 344 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 344 (460)
+|..++...-+.+..+.|..+|.+.++.+. .+...|......-.. .++.+.|.++|+...+. ++.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 566677777777778888888888875432 244555555444333 56666688888888776 667778888888888
Q ss_pred HcCCChhhHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 012577 345 VEGGEVEKADSILLKAQQQNKFKP-MFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAY 415 (460)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 415 (460)
.+.++.+.|..+|++....-+... ....|..++..-.+.|+.+.+.++.+++.+. .|+...+..+++-|
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 888888888888888765432222 3357888888888888888888888888874 34444455555544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0075 Score=58.48 Aligned_cols=222 Identities=12% Similarity=0.114 Sum_probs=97.2
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 012577 174 QSNDLTGMDQVVEAMKSEGIEPDSSTQAILAK--HYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQV 251 (460)
Q Consensus 174 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 251 (460)
..+++.+|.+-..++.+. .|+... ...+. ...+.|+.++|..+++.....+.. |..|...+-.+|...++.++|
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~~~-a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNALY-AKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCcHH-HHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 345555555555555443 233211 11112 234555566666555555444333 555555555566666666666
Q ss_pred HHHHHHhcc-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcC-C---------HHHHHH
Q 012577 252 ARIWKLCES-NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHK-M---------LSKGKD 320 (460)
Q Consensus 252 ~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~---------~~~a~~ 320 (460)
..+|++... .|+......+-.+|.+.+.+.+-.+.=-++-+. .+-+...+-.+++.+.+.- . ..-|.+
T Consensus 97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 97 VHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 666655433 444444444444444444443322222111111 1112333333333332210 0 122334
Q ss_pred HHHHHHHcC-CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 321 LVKQMAESG-CHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 321 ~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
.++.+.+.+ ---+..-...-.......|.+++|++++..-....-...+...-+.-+..+...+++.+..++..++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 444444432 1111111112222334456677777766322111112223333345556666667777777776666666
Q ss_pred C
Q 012577 400 G 400 (460)
Q Consensus 400 ~ 400 (460)
|
T Consensus 256 ~ 256 (932)
T KOG2053|consen 256 G 256 (932)
T ss_pred C
Confidence 5
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00038 Score=54.14 Aligned_cols=111 Identities=15% Similarity=0.205 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCChHHHHH
Q 012577 144 KKVADVLLLMEKENVKLT---QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD--SSTQAILAKHYVSGGRKEKAEA 218 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~ 218 (460)
..+...++.+.+.. +.+ ....-.+...+...|++++|...|+........|+ ......|...+...|++++|+.
T Consensus 28 ~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~ 106 (145)
T PF09976_consen 28 AKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALA 106 (145)
T ss_pred HHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 44555555555542 222 12233355677788888888888888887652222 2234456677788888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012577 219 MLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKL 257 (460)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (460)
.++...... .....+......|...|+.++|...|+.
T Consensus 107 ~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 107 TLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 886643333 2345666777888888888888888764
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.9e-05 Score=66.88 Aligned_cols=118 Identities=8% Similarity=-0.003 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHH
Q 012577 230 EHRWTCRLLLPLYAELGKADQVARIWKLCESNPW-----LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTA 304 (460)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 304 (460)
.+......+++.+....+++.+..++.+.+..|. ..|..++++.|.+.|..+.++.+++.=...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 3444555555555555556666665555544331 12345666666666666666666666666666667777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 012577 305 LLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG 347 (460)
Q Consensus 305 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 347 (460)
|++.+.+.|++..|.++...|...+...+..|+.--+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777766666666666555555555555555554443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00014 Score=65.91 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=57.3
Q ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHH
Q 012577 92 GEVVYRTLLANCVAGNNVKKAEEVFNRMKDK--GFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKIL 168 (460)
Q Consensus 92 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l 168 (460)
+......+++.+....+.+.+..++.+.... ....-..|.+++++.|...|. +.+..+++.=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3444444555555555555555555555433 111223334455555555554 5555555555555555555555555
Q ss_pred HHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012577 169 IDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVS 209 (460)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 209 (460)
|+.+.+.|++..|.++...|...+...+..|+..-+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 55555555555555555555444434444444444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00016 Score=51.15 Aligned_cols=77 Identities=12% Similarity=0.179 Sum_probs=54.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCChhhhHHHHHHHHhcCc---------hHHHHHHHHHHHcCCCCCHHHHH
Q 012577 97 RTLLANCVAGNNVKKAEEVFNRMKDKGF-PVTSFACNQLLILYKRLDK---------KKVADVLLLMEKENVKLTQFSYK 166 (460)
Q Consensus 97 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~---------~~a~~~~~~~~~~~~~~~~~~~~ 166 (460)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- .....+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455566667999999999999999999 8899999999887766543 23344555666666666666666
Q ss_pred HHHHHHh
Q 012577 167 ILIDIKG 173 (460)
Q Consensus 167 ~li~~~~ 173 (460)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 6655543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.2e-05 Score=43.43 Aligned_cols=31 Identities=29% Similarity=0.610 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 012577 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGF 124 (460)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 124 (460)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3789999999999999999999999988764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00021 Score=50.62 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=59.9
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhCC--------ChHHHHHHHHHHHhCCCCCCHHHHH
Q 012577 166 KILIDIKGQSNDLTGMDQVVEAMKSEGI-EPDSSTQAILAKHYVSGG--------RKEKAEAMLKEMEGDNLKEHRWTCR 236 (460)
Q Consensus 166 ~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 236 (460)
...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|++|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666667888888888888888888 788888888888776543 2345677888888888888888888
Q ss_pred HHHHHHHh
Q 012577 237 LLLPLYAE 244 (460)
Q Consensus 237 ~l~~~~~~ 244 (460)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.2e-05 Score=43.43 Aligned_cols=29 Identities=21% Similarity=0.325 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012577 164 SYKILIDIKGQSNDLTGMDQVVEAMKSEG 192 (460)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g 192 (460)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00028 Score=52.73 Aligned_cols=99 Identities=8% Similarity=-0.063 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHhcccC-CCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCc----hhHHHHH
Q 012577 25 AEIALAMANLRTRRMYGKALQLSEWLETNKKL-DFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRG----EVVYRTL 99 (460)
Q Consensus 25 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~l 99 (460)
..+......+.+.|++++|.+.|+.+....+- +.....+..+...+.+.|+++.|...|+.+....|+ ...+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667777788889999999999888765421 112345666888888889999999999887655443 3557777
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCC
Q 012577 100 LANCVAGNNVKKAEEVFNRMKDKG 123 (460)
Q Consensus 100 l~~~~~~~~~~~a~~~~~~m~~~g 123 (460)
..++.+.|+.++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 788888899999999998888774
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0002 Score=57.41 Aligned_cols=115 Identities=13% Similarity=0.197 Sum_probs=75.9
Q ss_pred HHHHHhcccCCCchhHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHH
Q 012577 80 ESYIQKIPESFRGEVVYRTLLANCVA-----GNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLME 154 (460)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~ 154 (460)
...|+.......+..+|..++..|.+ .|..+-....+..|.+-|+.-|..+|+.|++.+=+..-
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~f----------- 102 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKF----------- 102 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCc-----------
Confidence 34555554444677777777777754 46778888888889999999999999998887654321
Q ss_pred HcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 012577 155 KENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR 212 (460)
Q Consensus 155 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~ 212 (460)
.|... +.++-. -.-.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 103 ----vp~n~-fQ~~F~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 103 ----VPRNF-FQAEFM--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----ccccH-HHHHhc--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111 111111 1123445678888888888888888888888888876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0086 Score=52.51 Aligned_cols=62 Identities=16% Similarity=0.074 Sum_probs=27.5
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHhCC----CCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 337 WDALVKLHVEGGEVEKADSILLKAQQQNK----FKPMFS-SYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 337 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
+..+...+.+.|++++|.++|+++....- .+.+.. .+-..+-++...|++..|.+.+++...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555556666666666655543210 011111 122223344445666666666665554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.82 E-value=6e-05 Score=52.28 Aligned_cols=82 Identities=11% Similarity=-0.008 Sum_probs=59.8
Q ss_pred cccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHH
Q 012577 37 RRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVF 116 (460)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 116 (460)
.|+++.|+.+++.+....+..++...+-.+..++.+.|++++|..++++......+....-.+..++.+.|++++|+++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 57899999999999887632223444555789999999999999999883222233344445678899999999999998
Q ss_pred HH
Q 012577 117 NR 118 (460)
Q Consensus 117 ~~ 118 (460)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 75
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.012 Score=51.68 Aligned_cols=206 Identities=13% Similarity=0.160 Sum_probs=107.0
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012577 164 SYKILIDIKGQSNDLTGMDQVVEAMKSE----GIEP-DSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLL 238 (460)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 238 (460)
.|......|-..|++++|.+.|.+..+. +-+. -...|.....+|-+. ++++|+..+++.
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A--------------- 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA--------------- 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH---------------
Confidence 3445556667777888877777765432 1000 012233333333222 555555555443
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhc----cc-CcCHHHHHHHHHHHHhc
Q 012577 239 LPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKL-NKVEEAEAVFKRMSKT----WK-KLSTKHYTALLKVYADH 312 (460)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~ 312 (460)
+..|...|++..|-..+.. +...|-.. |+++.|++.|++..+. +. ..-...+..+...+.+.
T Consensus 101 ~~~y~~~G~~~~aA~~~~~------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 3455566666666555544 35566666 7788888877776542 10 00123456677778888
Q ss_pred CCHHHHHHHHHHHHHcCCCC-----CH-HHHHHHHHHHHcCCChhhHHHHHHHHHHhC-CCCcC--HHHHHHHHHHHHhc
Q 012577 313 KMLSKGKDLVKQMAESGCHI-----GP-LAWDALVKLHVEGGEVEKADSILLKAQQQN-KFKPM--FSSYMLIMDQYAKR 383 (460)
Q Consensus 313 g~~~~a~~~~~~~~~~~~~~-----~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~~ 383 (460)
|++++|.++|++....-... +. ..+-..+-++...||+..|.+.+++..... ++..+ ......|+.++-..
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence 88888888888876642211 12 123333445556788888888888876543 22222 23344555555331
Q ss_pred --CCHHHHHHHHHHHH
Q 012577 384 --GDIHSTEKIFHRMR 397 (460)
Q Consensus 384 --g~~~~a~~~~~~m~ 397 (460)
..+++|+.-|+.+.
T Consensus 249 D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 249 DVEAFTEAVAEYDSIS 264 (282)
T ss_dssp -CCCHHHHCHHHTTSS
T ss_pred CHHHHHHHHHHHcccC
Confidence 23444444444433
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00043 Score=49.02 Aligned_cols=91 Identities=15% Similarity=0.080 Sum_probs=41.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC
Q 012577 305 LLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRG 384 (460)
Q Consensus 305 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 384 (460)
+...+...|++++|...++.+.+.. +.+...+..+...+...+++++|.+.++......+ .+...+..+...+...|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP--DNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--cchhHHHHHHHHHHHHH
Confidence 3344444455555555555444431 22233444444444445555555555554443221 12234444445555555
Q ss_pred CHHHHHHHHHHHHH
Q 012577 385 DIHSTEKIFHRMRQ 398 (460)
Q Consensus 385 ~~~~a~~~~~~m~~ 398 (460)
++++|...+.+..+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 55555555554443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00059 Score=48.30 Aligned_cols=94 Identities=16% Similarity=0.069 Sum_probs=73.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 012577 267 CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVE 346 (460)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 346 (460)
+..+...+...|++++|...++...+.... +...+..+...+...|++++|.+.++...... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 556677788889999999999888775432 44677778888888899999999998887764 4455677888888888
Q ss_pred CCChhhHHHHHHHHHH
Q 012577 347 GGEVEKADSILLKAQQ 362 (460)
Q Consensus 347 ~~~~~~a~~~~~~~~~ 362 (460)
.|+++.|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 8899999888887754
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0001 Score=51.16 Aligned_cols=81 Identities=14% Similarity=0.076 Sum_probs=40.2
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 012577 312 HKMLSKGKDLVKQMAESGCH-IGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTE 390 (460)
Q Consensus 312 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 390 (460)
.|+++.|..+++.+.+.... ++...+..+..+|.+.|++++|..+++. .+..+ .+....-.+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~--~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP--SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH--CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC--CCHHHHHHHHHHHHHhCCHHHHH
Confidence 35566666666666554211 1233444456666666666666666655 22211 11223334455666666666666
Q ss_pred HHHHH
Q 012577 391 KIFHR 395 (460)
Q Consensus 391 ~~~~~ 395 (460)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0029 Score=48.50 Aligned_cols=95 Identities=13% Similarity=-0.073 Sum_probs=57.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 012577 269 AAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGG 348 (460)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 348 (460)
.+...+...|++++|..+|+......+. +..-|-.|..++-..|++++|+..|....... +-|+..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 3344455566666666666666654433 44555556666666666666666666666654 345566666666666666
Q ss_pred ChhhHHHHHHHHHHhCC
Q 012577 349 EVEKADSILLKAQQQNK 365 (460)
Q Consensus 349 ~~~~a~~~~~~~~~~~~ 365 (460)
+.+.|.+.|+..+...+
T Consensus 118 ~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 118 NVCYAIKALKAVVRICG 134 (157)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 66666666666655443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0046 Score=49.70 Aligned_cols=88 Identities=15% Similarity=0.053 Sum_probs=50.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLS--TKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKL 343 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 343 (460)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 445555666666677777776666665432221 2456666666666777777777766666542 2244555555555
Q ss_pred HHcCCChhhHH
Q 012577 344 HVEGGEVEKAD 354 (460)
Q Consensus 344 ~~~~~~~~~a~ 354 (460)
+...|+...+.
T Consensus 116 ~~~~g~~~~a~ 126 (172)
T PRK02603 116 YHKRGEKAEEA 126 (172)
T ss_pred HHHcCChHhHh
Confidence 55555544433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.062 Score=52.49 Aligned_cols=191 Identities=10% Similarity=0.011 Sum_probs=107.1
Q ss_pred HhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHH
Q 012577 35 RTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEE 114 (460)
Q Consensus 35 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 114 (460)
.+.|+.++|..+++.....+ +.|..+...+-.+|.+.++.++|..+|+......|+......+..+|.+.+++.+-.+
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777776666655443 2366667777777777777777777777777766776556666667777666665544
Q ss_pred HHHHHHhCCCCCChhhhHHHHHHHHhcCc-----------hHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhhcCChhHHH
Q 012577 115 VFNRMKDKGFPVTSFACNQLLILYKRLDK-----------KKVADVLLLMEKEN-VKLTQFSYKILIDIKGQSNDLTGMD 182 (460)
Q Consensus 115 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-----------~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~ 182 (460)
+--+|-+. .+-.+..|=+++..+.+.-. .-|...++.+.+.+ ---+..-...-...+...|++++|.
T Consensus 132 aa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal 210 (932)
T KOG2053|consen 132 AALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEAL 210 (932)
T ss_pred HHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHH
Confidence 44444432 34455555555555443322 12333444444332 1111111222233445566777777
Q ss_pred HHHHH-HHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 012577 183 QVVEA-MKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNL 228 (460)
Q Consensus 183 ~~~~~-m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 228 (460)
+++.. ..+.-...+...-+.-+..+...+++.+..++-.++...|.
T Consensus 211 ~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 211 EFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 77733 33332233444445556666677777777777777776654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0013 Score=59.50 Aligned_cols=91 Identities=9% Similarity=-0.063 Sum_probs=55.8
Q ss_pred HHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChh
Q 012577 272 EAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVE 351 (460)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 351 (460)
..+...|++++|++.|+++++.... +...|..+..+|...|++++|...++.+++.. +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 3344556666666666666665443 45556666666666666666666666666643 335556666666666666666
Q ss_pred hHHHHHHHHHHhC
Q 012577 352 KADSILLKAQQQN 364 (460)
Q Consensus 352 ~a~~~~~~~~~~~ 364 (460)
+|...|+++.+..
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 6666666665543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00022 Score=47.09 Aligned_cols=64 Identities=16% Similarity=0.096 Sum_probs=48.2
Q ss_pred HhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHH
Q 012577 35 RTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLL 100 (460)
Q Consensus 35 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll 100 (460)
.+.|++++|+++|+.+.... |.+......++.+|.+.|++++|..+++.+....|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 46788888888888887765 55777777888888888888888888888887767655555443
|
... |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0035 Score=48.09 Aligned_cols=92 Identities=5% Similarity=-0.112 Sum_probs=64.4
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE 244 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (460)
.-.+...+...|++++|.++|+-+.... +-+..-|-.|..++-..|++++|+..|......++ -|+..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 3344555667788888888887777654 44566667777777777888888888887777664 355666677777777
Q ss_pred cCChhHHHHHHHHh
Q 012577 245 LGKADQVARIWKLC 258 (460)
Q Consensus 245 ~~~~~~a~~~~~~~ 258 (460)
.|+.+.|.+.|+..
T Consensus 116 lG~~~~A~~aF~~A 129 (157)
T PRK15363 116 CDNVCYAIKALKAV 129 (157)
T ss_pred cCCHHHHHHHHHHH
Confidence 77777777777654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.028 Score=47.84 Aligned_cols=59 Identities=19% Similarity=0.065 Sum_probs=36.0
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhCCCCCCH-HHH---HHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 012577 168 LIDIKGQSNDLTGMDQVVEAMKSEGIEPDS-STQ---AILAKHYVSGGRKEKAEAMLKEMEGDNL 228 (460)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 228 (460)
....+...|++++|.+.|+.+...- |+. ... -.++.++.+.+++++|...+++..+..+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 3444556777777777777776652 322 221 3445666777777777777777766543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.01 Score=50.50 Aligned_cols=190 Identities=11% Similarity=0.036 Sum_probs=95.8
Q ss_pred hHHHHHHHHHhhCHHHHHHHHHhcccCCCchhH----HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHH
Q 012577 63 YASCLDLIAKLRGLQKAESYIQKIPESFRGEVV----YRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILY 138 (460)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 138 (460)
.-.....+...|++++|.+.|+.+....|.... .-.++.++.+.+++++|...|++..+....-....+...+.+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 334455566788899999999888777664322 2345677888899999999999888764332223333333333
Q ss_pred HhcCchHHHHHHHHHHHcC-CCCCH-------HHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 012577 139 KRLDKKKVADVLLLMEKEN-VKLTQ-------FSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSG 210 (460)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 210 (460)
+.... ....+....... ...|. ..+..+++-|-.+.-..+|...+..+... . ...--.+...|.+.
T Consensus 115 ~~~~~--~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~---l-a~~e~~ia~~Y~~~ 188 (243)
T PRK10866 115 TNMAL--DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR---L-AKYELSVAEYYTKR 188 (243)
T ss_pred hhhhc--chhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHc
Confidence 21000 000000000000 00000 12233333333333344444433333321 0 00111344556777
Q ss_pred CChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 012577 211 GRKEKAEAMLKEMEGD--NLKEHRWTCRLLLPLYAELGKADQVARIWKLC 258 (460)
Q Consensus 211 ~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 258 (460)
|.+..|..-++.+.+. +.+........++.+|...|..++|......+
T Consensus 189 ~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 189 GAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred CchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 7777777777777654 22223344555666666666666666655443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0031 Score=57.16 Aligned_cols=105 Identities=11% Similarity=0.086 Sum_probs=85.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 012577 306 LKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGD 385 (460)
Q Consensus 306 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (460)
...+...|++++|...|+++++.. +.+...|..+..+|.+.|++++|+..+++++...+ .+...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP--SLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHhCC
Confidence 456677899999999999999874 55788899999999999999999999999987653 355678888999999999
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 012577 386 IHSTEKIFHRMRQVGYVARFKQFQTLVQAY 415 (460)
Q Consensus 386 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 415 (460)
+++|+..|++..+.+ |+......++..|
T Consensus 86 ~~eA~~~~~~al~l~--P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLA--PGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 999999999999864 4444444444333
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0036 Score=54.69 Aligned_cols=128 Identities=14% Similarity=0.099 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHhcc--CCCHHHHHHHHHHHH
Q 012577 199 TQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPL-YAELGKADQVARIWKLCES--NPWLDVCMAAIEAWG 275 (460)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~ 275 (460)
+|..+++..-+.+..+.|..+|.+..+.+. .+...|...... +...++.+.|..+|+...+ ..+...|...++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 344444444444444455555544443221 112222222222 1123334444444444332 223344444455555
Q ss_pred ccCCHHHHHHHHHHHHhcccCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 276 KLNKVEEAEAVFKRMSKTWKKLS---TKHYTALLKVYADHKMLSKGKDLVKQMAES 328 (460)
Q Consensus 276 ~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 328 (460)
+.|+.+.|..+|++.... +.++ ...|...+..-.+.|+.+.+.++.+.+.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555555555555555543 1111 135555555555566666666666555553
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00082 Score=54.04 Aligned_cols=107 Identities=12% Similarity=0.186 Sum_probs=81.1
Q ss_pred cCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHH
Q 012577 297 LSTKHYTALLKVYAD-----HKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFS 371 (460)
Q Consensus 297 p~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 371 (460)
.+-.+|..+++.|.+ .|..+-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+.-.
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h-------- 114 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH-------- 114 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc--------
Confidence 388899999998875 46777788888999999999999999999988765 3332 22333332211
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCchh
Q 012577 372 SYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAY 423 (460)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 423 (460)
| -.+.+-|++++++|...|+.||..++..|++.+.+.+....
T Consensus 115 --------y--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~ 156 (228)
T PF06239_consen 115 --------Y--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMK 156 (228)
T ss_pred --------C--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHH
Confidence 1 12456789999999999999999999999999999887433
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0026 Score=50.91 Aligned_cols=61 Identities=15% Similarity=-0.059 Sum_probs=26.5
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEP--DSSTQAILAKHYVSGGRKEKAEAMLKEMEG 225 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (460)
|..+...+...|++++|...|++.......+ ...++..+...+...|++++|+..++....
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444455555555554444331111 122444444444444555555554444443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0062 Score=48.94 Aligned_cols=90 Identities=17% Similarity=0.091 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD--SSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLL 239 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 239 (460)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.... +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 34566677777778888888888887775432221 356777777777888888888887777765322 344455555
Q ss_pred HHHHhcCChhHHH
Q 012577 240 PLYAELGKADQVA 252 (460)
Q Consensus 240 ~~~~~~~~~~~a~ 252 (460)
.++...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 5666555544433
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.067 Score=47.40 Aligned_cols=111 Identities=15% Similarity=0.211 Sum_probs=79.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHV 345 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (460)
+.+..+.-+...|+...|.++-.+.. + |+..-|-..+.+++..++|++..++-.. . -++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 34555666677788888777765543 2 6888888889999999999887776432 1 23577888899999
Q ss_pred cCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012577 346 EGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMR 397 (460)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 397 (460)
+.|+..+|..++.++ .+..-+..|.+.|++.+|.+...+..
T Consensus 249 ~~~~~~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HCCCHHHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 999988888887652 12455677888899888887655443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.069 Score=47.48 Aligned_cols=213 Identities=10% Similarity=-0.033 Sum_probs=134.9
Q ss_pred CCHHHHHHH-HHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHH--HHccCCHHHHHHHHHHHHhcccCcCHHHH----
Q 012577 230 EHRWTCRLL-LPLYAELGKADQVARIWKLCESNPWLDVCMAAIEA--WGKLNKVEEAEAVFKRMSKTWKKLSTKHY---- 302 (460)
Q Consensus 230 ~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---- 302 (460)
|.-.++..+ ..++...|+.++|.+.-..+..-.....+...+++ +--.++.+.|...|++.+..++ +...-
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp--dh~~sk~~~ 243 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDP--DHQKSKSAS 243 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccCh--hhhhHHhHh
Confidence 333455444 45667788888888776655543333333444433 3346778889999988877543 32221
Q ss_pred ---------HHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC-
Q 012577 303 ---------TALLKVYADHKMLSKGKDLVKQMAES---GCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM- 369 (460)
Q Consensus 303 ---------~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 369 (460)
..=..-..+.|++..|.+.+.+.+.. +..|+...|.....+..+.|+.++|+.-.+...+.+ |.
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~sy 320 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---SSY 320 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---HHH
Confidence 11122345789999999999998863 345566777777888889999999999888776532 21
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCC-chhhhHHHHHhCCCCcCHHHHHHHHHH
Q 012577 370 FSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYV-ARFKQFQTLVQAYINAKT-PAYGIRDRMRADNVFPNKALAAQVAQV 447 (460)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~g~-~~~~~~~~m~~~~~~p~~~~~~~l~~~ 447 (460)
...|..-..++.-.++|++|.+-+++..+..-. ....++.....++-++++ .-..++..-+.....|....|..+..+
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~ 400 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALV 400 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHH
Confidence 112222334555678899999999988775422 234566666666766666 455555555555556666666655444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.014 Score=55.59 Aligned_cols=141 Identities=11% Similarity=0.072 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHHc--c---CCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHc
Q 012577 262 PWLDVCMAAIEAWGK--L---NKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHK--------MLSKGKDLVKQMAES 328 (460)
Q Consensus 262 ~~~~~~~~li~~~~~--~---~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~ 328 (460)
.+...|...+.+... . +....|..+|++..+..+. ....|..+..++.... +...+.+........
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 355666666655433 2 2366788888888876443 3445555444433221 122333333333332
Q ss_pred -CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH
Q 012577 329 -GCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQ 407 (460)
Q Consensus 329 -~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 407 (460)
..+.++..|..+.......|++++|...++++...+ |+...|..+...+...|+.++|.+.+++....+ |...+
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~---ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P~~pt 488 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE---MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--PGENT 488 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCch
Confidence 133455677777666667788888888888887654 677788888888888888888888888887753 44444
Q ss_pred H
Q 012577 408 F 408 (460)
Q Consensus 408 ~ 408 (460)
|
T Consensus 489 ~ 489 (517)
T PRK10153 489 L 489 (517)
T ss_pred H
Confidence 4
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.014 Score=43.17 Aligned_cols=93 Identities=11% Similarity=-0.045 Sum_probs=47.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCc-CHHHHHHHHHHHH
Q 012577 305 LLKVYADHKMLSKGKDLVKQMAESGCHIG--PLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKP-MFSSYMLIMDQYA 381 (460)
Q Consensus 305 li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 381 (460)
+..++-..|+.++|..+|+.....|.... ...+-.+...+...|++++|..++++.....+-.+ +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455556666666666666666554432 23344455556666666666666666554432100 1111122233455
Q ss_pred hcCCHHHHHHHHHHHH
Q 012577 382 KRGDIHSTEKIFHRMR 397 (460)
Q Consensus 382 ~~g~~~~a~~~~~~m~ 397 (460)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5666666666655444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0023 Score=54.03 Aligned_cols=99 Identities=15% Similarity=0.038 Sum_probs=68.5
Q ss_pred HHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChh
Q 012577 272 EAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVE 351 (460)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 351 (460)
.-+.+.+++.+|+..|.+.++..+. |.+-|..=..+|++.|.++.|++-.+..+... +--..+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 3456677788888888887776443 56666667778888888888877777776642 223467777778888888888
Q ss_pred hHHHHHHHHHHhCCCCcCHHHHHH
Q 012577 352 KADSILLKAQQQNKFKPMFSSYML 375 (460)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~ 375 (460)
+|.+.|.+.++ +.|+-.+|-.
T Consensus 167 ~A~~aykKaLe---ldP~Ne~~K~ 187 (304)
T KOG0553|consen 167 EAIEAYKKALE---LDPDNESYKS 187 (304)
T ss_pred HHHHHHHhhhc---cCCCcHHHHH
Confidence 88888777764 4465555543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.006 Score=48.84 Aligned_cols=62 Identities=8% Similarity=-0.124 Sum_probs=32.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcccCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 267 CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKL--STKHYTALLKVYADHKMLSKGKDLVKQMAES 328 (460)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 328 (460)
+..+...+...|++++|...|+........| ...++..+...+...|++++|...++.....
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4444455555566666666665554432211 1234555555566666666666666555543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.017 Score=55.02 Aligned_cols=141 Identities=9% Similarity=-0.033 Sum_probs=93.2
Q ss_pred CCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHhcc-CCCH-HHHHHHHHHHHcc--------CCHHHHHHHHHHHH
Q 012577 227 NLKEHRWTCRLLLPLYAELG-----KADQVARIWKLCES-NPWL-DVCMAAIEAWGKL--------NKVEEAEAVFKRMS 291 (460)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~-~~~~-~~~~~li~~~~~~--------~~~~~a~~~~~~m~ 291 (460)
..+.+...|...+++..... +.+.|..+|++... +|+- ..+..+..++... .+...+.+......
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34456677777777654322 25577777776655 5543 3343333222211 12233444444433
Q ss_pred hc-ccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC
Q 012577 292 KT-WKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM 369 (460)
Q Consensus 292 ~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 369 (460)
.. ....+...|..+.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|.+.++++...++..|+
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 32 123355778888777777899999999999999965 68889999999999999999999999999877665554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.013 Score=49.77 Aligned_cols=126 Identities=12% Similarity=0.041 Sum_probs=92.5
Q ss_pred HHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---CChhhHHHHHHHH
Q 012577 284 EAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG---GEVEKADSILLKA 360 (460)
Q Consensus 284 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~ 360 (460)
..-++.-...++. |...|-.|...|...|+++.|..-|....+.. ++|+..+..+..++... ....++..+|+++
T Consensus 142 ~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 142 IARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred HHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 3334444444444 88899999999999999999999999998863 56777777777766543 3467889999999
Q ss_pred HHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 012577 361 QQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAY 415 (460)
Q Consensus 361 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 415 (460)
...++ -|+.....|...+...|++.+|...|+.|.+.. +|+ ..+..+|..-
T Consensus 220 l~~D~--~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l-p~~-~~rr~~ie~~ 270 (287)
T COG4235 220 LALDP--ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL-PAD-DPRRSLIERS 270 (287)
T ss_pred HhcCC--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCC-CchHHHHHHH
Confidence 87664 345566667778889999999999999999875 544 3455555443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.02 Score=42.29 Aligned_cols=106 Identities=17% Similarity=0.082 Sum_probs=71.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcccCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHH
Q 012577 270 AIEAWGKLNKVEEAEAVFKRMSKTWKKLS--TKHYTALLKVYADHKMLSKGKDLVKQMAESGCHI---GPLAWDALVKLH 344 (460)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~ 344 (460)
+..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++...... +. +......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 34556678889999999998888776543 3456667788888999999999999887752 21 223333344567
Q ss_pred HcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012577 345 VEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYA 381 (460)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (460)
...|+.++|.+.+-.... ++...|..-|..|.
T Consensus 86 ~~~gr~~eAl~~~l~~la-----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA-----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 788999999888866543 23335555555443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.1 Score=46.26 Aligned_cols=110 Identities=16% Similarity=0.168 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhc
Q 012577 233 WTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADH 312 (460)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 312 (460)
.+.+..+.-+...|+...|.++-+..+ -|+..-|...+.+++..+++++-.++-.. + . ++..|..++.+|.+.
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k--K--sPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK-VPDKRFWWLKIKALAENKDWDELEKFAKS--K--K--SPIGYEPFVEACLKY 250 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C--C--CCCChHHHHHHHHHC
Confidence 345556677778888888888877763 47777888889999999999877776432 1 1 457889999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHH
Q 012577 313 KMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLK 359 (460)
Q Consensus 313 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 359 (460)
|+..+|..+...+ + +..-+..|.++|++.+|.+.--+
T Consensus 251 ~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 251 GNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999988887762 1 24567778889999988876443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.12 Score=46.61 Aligned_cols=417 Identities=12% Similarity=0.068 Sum_probs=217.3
Q ss_pred CCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHH
Q 012577 19 GNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRT 98 (460)
Q Consensus 19 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (460)
..|.+...+..+++.+..++..++..+.++++... +|.-+.++..-+.+=....++...+.+|.+-....-+...|..
T Consensus 37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p--fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~l 114 (660)
T COG5107 37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP--FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWML 114 (660)
T ss_pred cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC--CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHH
Confidence 45667788899999999999999999999888654 4666667777777666678888888888876655456777777
Q ss_pred HHHHHHcCC-----C-HHHHHHHHHHHH-hCCCCCCh-hhhHHHHHHHHh---cCc-------hHHHHHHHHHHHcCCCC
Q 012577 99 LLANCVAGN-----N-VKKAEEVFNRMK-DKGFPVTS-FACNQLLILYKR---LDK-------KKVADVLLLMEKENVKL 160 (460)
Q Consensus 99 ll~~~~~~~-----~-~~~a~~~~~~m~-~~g~~~~~-~~~~~ll~~~~~---~~~-------~~a~~~~~~~~~~~~~~ 160 (460)
.+..-.+.. + -....+.|+-.. ..++.|-. ..|+..+..+.. .+. +.....+.++..-.+.-
T Consensus 115 Yl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~n 194 (660)
T COG5107 115 YLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGN 194 (660)
T ss_pred HHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCcccc
Confidence 665443322 1 112223333322 23444433 334443332211 111 34445555555432111
Q ss_pred CHHHHHH------HHHH-----Hh--hcCChhHHHHHHHHHHh--CCCC----CCHHHHHH-----------HHHHHHhC
Q 012577 161 TQFSYKI------LIDI-----KG--QSNDLTGMDQVVEAMKS--EGIE----PDSSTQAI-----------LAKHYVSG 210 (460)
Q Consensus 161 ~~~~~~~------li~~-----~~--~~~~~~~a~~~~~~m~~--~g~~----~~~~~~~~-----------l~~~~~~~ 210 (460)
=...|+- =++- +. ...-+-.|.+.+++... .|.. .+..+++- .|..-...
T Consensus 195 leklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en 274 (660)
T COG5107 195 LEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMEN 274 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcC
Confidence 1111111 0000 00 01113344555554432 1211 11122221 22111111
Q ss_pred -----CC-hH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCCHH-----------------
Q 012577 211 -----GR-KE-KAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NPWLD----------------- 265 (460)
Q Consensus 211 -----~~-~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~----------------- 265 (460)
|+ .. ..--++++.... +......|-.--.-+...++-+.|+....+-.. .|...
T Consensus 275 ~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~nd~e~v~ 353 (660)
T COG5107 275 GLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELVNDEEAVY 353 (660)
T ss_pred CcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhcccHHHHh
Confidence 11 01 111112222111 111223333333334445555555554443221 22210
Q ss_pred -HHHHHHHHHHc---cCCHHHHHHH------HHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH
Q 012577 266 -VCMAAIEAWGK---LNKVEEAEAV------FKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESG-CHIGP 334 (460)
Q Consensus 266 -~~~~li~~~~~---~~~~~~a~~~------~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~ 334 (460)
+|..++..+.+ .++.+.+... ..+..-....--...|...+..-.+...++.|..+|-+..+.| +.+++
T Consensus 354 ~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~v 433 (660)
T COG5107 354 GCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHV 433 (660)
T ss_pred hhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcce
Confidence 01111111110 1111111111 1111100011134567788888888888999999999999888 67788
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc--HHHHHHHH
Q 012577 335 LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVAR--FKQFQTLV 412 (460)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~l~ 412 (460)
..+++++..++ .|+...|..+|+.-....+ .+...-...+..+.+.++-+.|..+|+..... +..+ ...|..+|
T Consensus 434 yi~~A~~E~~~-~~d~~ta~~ifelGl~~f~--d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi 509 (660)
T COG5107 434 YIYCAFIEYYA-TGDRATAYNIFELGLLKFP--DSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMI 509 (660)
T ss_pred eeeHHHHHHHh-cCCcchHHHHHHHHHHhCC--CchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHH
Confidence 88898888765 4788889999987666542 22233456677788889999999999965543 1222 46888899
Q ss_pred HHHHhcCC--chhhhHHHHHhCCCCcCHHHHHHH
Q 012577 413 QAYINAKT--PAYGIRDRMRADNVFPNKALAAQV 444 (460)
Q Consensus 413 ~~~~~~g~--~~~~~~~~m~~~~~~p~~~~~~~l 444 (460)
.--..-|+ .+.++-++|.. +.|...+...+
T Consensus 510 ~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF 541 (660)
T COG5107 510 EYESMVGSLNNVYSLEERFRE--LVPQENLIEVF 541 (660)
T ss_pred HHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHH
Confidence 88888888 56677777766 46776666666
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0017 Score=42.84 Aligned_cols=59 Identities=17% Similarity=0.104 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-ChhhHHHHHHHH
Q 012577 301 HYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGG-EVEKADSILLKA 360 (460)
Q Consensus 301 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~ 360 (460)
+|..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.| ++++|++.+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 33444444444444444444444444432 223334444444444444 344444444443
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.001 Score=44.00 Aligned_cols=64 Identities=16% Similarity=0.019 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHh
Q 012577 161 TQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGG-RKEKAEAMLKEMEG 225 (460)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 225 (460)
+..+|..+...+...|++++|+..|++..+.. +.+...|..+..++...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566677777777777777777777777664 445667777777777777 57777777776654
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.047 Score=45.42 Aligned_cols=129 Identities=11% Similarity=0.020 Sum_probs=62.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHH-----HHH
Q 012577 97 RTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKI-----LID 170 (460)
Q Consensus 97 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~-----li~ 170 (460)
+++++++.-.|.+.-...++++.++...+.++.....|++.-.+.|+ +.|...|++..+..-..|..+.+. ...
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 44444455555555566666666655545555555555555555565 444444444433221222222222 223
Q ss_pred HHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 012577 171 IKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD 226 (460)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (460)
.|.-.+++.+|...|.++.... .-|+...|.-.-+..-.|+..+|++.++.|.+.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444555555555555555443 233333333333333445555566666555554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0012 Score=42.93 Aligned_cols=58 Identities=16% Similarity=0.075 Sum_probs=40.9
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 012577 168 LIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD 226 (460)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (460)
+...+.+.|++++|.+.|+++.+.. +-+...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456677777788888887777664 345677777777777778888877777777654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0014 Score=42.66 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012577 372 SYMLIMDQYAKRGDIHSTEKIFHRMR 397 (460)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 397 (460)
.+..+..++...|++++|..+|+++.
T Consensus 33 a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 33 AWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333344444444444444444443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0063 Score=45.43 Aligned_cols=80 Identities=10% Similarity=-0.022 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH---------------HcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhC
Q 012577 300 KHYTALLKVYADHKMLSKGKDLVKQMA---------------ESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 300 ~~~~~li~~~~~~g~~~~a~~~~~~~~---------------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
.++..++.++++.|+.+....+++..- .....|+..+..+++.+|+..|++..|.++.+...+..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344445555555555554444443332 12234556666666666666666666666666666666
Q ss_pred CCCcCHHHHHHHHHH
Q 012577 365 KFKPMFSSYMLIMDQ 379 (460)
Q Consensus 365 ~~~~~~~~~~~l~~~ 379 (460)
+++.+..+|..|++-
T Consensus 83 ~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHH
Confidence 655555566655553
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0017 Score=42.69 Aligned_cols=50 Identities=26% Similarity=0.387 Sum_probs=21.0
Q ss_pred CCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 347 GGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
.|++++|.++|+++....+- +...+..+..+|.+.|++++|.++++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444443321 223333444444444444444444444444
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.019 Score=47.64 Aligned_cols=140 Identities=9% Similarity=-0.037 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCC---CH-----HHHHHH
Q 012577 199 TQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNP---WL-----DVCMAA 270 (460)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-----~~~~~l 270 (460)
..+.+++.+.-.|.+.-....+.+.++...+.++.....+++.-.+.||.+.|...|+.+.+.. +. ....+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4456666677777888888888888887767777778888888888888888888888665411 11 122233
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012577 271 IEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALV 341 (460)
Q Consensus 271 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 341 (460)
...|.-.+++..|...+.++...+.. |+...|.-.-+..-.|+...|.+.++.|.+. .|...+-++++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 34455567777777777777766544 5555555444555567788888888888774 35554444433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0056 Score=51.75 Aligned_cols=93 Identities=14% Similarity=0.012 Sum_probs=52.0
Q ss_pred HhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 012577 172 KGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQV 251 (460)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 251 (460)
..+.+++++|+..|.+.++.. +-|.+.|..-..+|++.|.++.|++-.+..+..+.. ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 345566666666666666553 345555666666666666666666666555554322 234555555556556666655
Q ss_pred HHHHHHhcc-CCCHHH
Q 012577 252 ARIWKLCES-NPWLDV 266 (460)
Q Consensus 252 ~~~~~~~~~-~~~~~~ 266 (460)
.+.|++... .|+-.+
T Consensus 169 ~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 169 IEAYKKALELDPDNES 184 (304)
T ss_pred HHHHHhhhccCCCcHH
Confidence 555554433 444333
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0097 Score=52.55 Aligned_cols=131 Identities=9% Similarity=-0.075 Sum_probs=63.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH----hcccC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCC-CCCHHH
Q 012577 267 CMAAIEAWGKLNKVEEAEAVFKRMS----KTWKK-LSTKHYTALLKVYADHKMLSKGKDLVKQMAE----SGC-HIGPLA 336 (460)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~~ 336 (460)
|-.|.+.|.-.|+++.|+..-+.-+ +.|-+ .....+..+..++.-.|+++.|.+.|+.... .|- .....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 3444444555566666655443221 11111 1223455556666666666666665554322 111 112344
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHH----hCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012577 337 WDALVKLHVEGGEVEKADSILLKAQQ----QNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMR 397 (460)
Q Consensus 337 ~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 397 (460)
.-+|...|.-..++++|+.++.+-.. .....-....+.+|..+|...|..+.|+.+.+.-.
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45566666666666666666544221 11111223455566666666666666665555443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.13 Score=42.65 Aligned_cols=59 Identities=19% Similarity=0.042 Sum_probs=33.6
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 012577 168 LIDIKGQSNDLTGMDQVVEAMKSEG--IEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD 226 (460)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (460)
....+...|++++|.+.|+.+...- -+--....-.++.++.+.|+++.|...++...+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444556677777777777766541 0112344455666667777777777777766654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0097 Score=44.43 Aligned_cols=88 Identities=11% Similarity=0.113 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHH--------------HhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 333 GPLAWDALVKLHVEGGEVEKADSILLKAQ--------------QQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
|..++..++.++++.|+++....+++..- ...+..|+..+..+++.+|+..|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 46788999999999999999998887642 1235678999999999999999999999999998876
Q ss_pred -cCCCccHHHHHHHHHHHHhcCC
Q 012577 399 -VGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 399 -~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
.+++.+..+|..|++=+...-+
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhcC
Confidence 5678789999999976555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.019 Score=50.75 Aligned_cols=86 Identities=10% Similarity=-0.020 Sum_probs=56.7
Q ss_pred HHHHHhcccchhHHHHHHHHHhcccCC--CChhhhHHHHHHHHHhhCHHHHHHHHHh-------cccCCCchhHHHHHHH
Q 012577 31 MANLRTRRMYGKALQLSEWLETNKKLD--FIERDYASCLDLIAKLRGLQKAESYIQK-------IPESFRGEVVYRTLLA 101 (460)
Q Consensus 31 l~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~~~ll~ 101 (460)
-..+++.|+...-+.+|+...+-+--. .-..+|+.+.++|.-.+++++|.++... +-...-...+...|.+
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 345899999999999999988776211 1234577778888888999999986543 1111112334445556
Q ss_pred HHHcCCCHHHHHHHH
Q 012577 102 NCVAGNNVKKAEEVF 116 (460)
Q Consensus 102 ~~~~~~~~~~a~~~~ 116 (460)
.+--.|.+++|+-..
T Consensus 104 tlKv~G~fdeA~~cc 118 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCC 118 (639)
T ss_pred hhhhhcccchHHHHH
Confidence 666677777776553
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.11 Score=40.93 Aligned_cols=65 Identities=12% Similarity=-0.050 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012577 160 LTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEME 224 (460)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (460)
|++..--.|..+..+.|+..+|...|++...--...|....-.+.++....+++..|...++++-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 33333333444444444444444444444332222333334444444444444444444444433
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.046 Score=51.34 Aligned_cols=56 Identities=11% Similarity=0.102 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHhcCc---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHH
Q 012577 129 FACNQLLILYKRLDK---KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEA 187 (460)
Q Consensus 129 ~~~~~ll~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 187 (460)
-.++..-.+|.+-++ -+...-++++++.|-.|+... +...++-.|.+.+|-++|.+
T Consensus 599 L~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 599 LDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 344555556666555 233344566777776677654 34556667788888777754
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.025 Score=48.58 Aligned_cols=88 Identities=11% Similarity=0.109 Sum_probs=45.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHhcC
Q 012577 310 ADHKMLSKGKDLVKQMAESGCHIG----PLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM-FSSYMLIMDQYAKRG 384 (460)
Q Consensus 310 ~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 384 (460)
.+.|++++|...|+.+.+.- |+ ...+-.+...|...|++++|...|+.+.+.++..|. ...+-.+...+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 44455566655555555531 22 234455555566666666666666665554432221 122333444455556
Q ss_pred CHHHHHHHHHHHHHc
Q 012577 385 DIHSTEKIFHRMRQV 399 (460)
Q Consensus 385 ~~~~a~~~~~~m~~~ 399 (460)
+.++|.++|+++.+.
T Consensus 232 ~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 232 DTAKAKAVYQQVIKK 246 (263)
T ss_pred CHHHHHHHHHHHHHH
Confidence 666666666655553
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.037 Score=47.22 Aligned_cols=98 Identities=8% Similarity=-0.107 Sum_probs=45.8
Q ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhc-Cc---hHHHHHHHHHHHcCCCCCHHHHHH
Q 012577 92 GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRL-DK---KKVADVLLLMEKENVKLTQFSYKI 167 (460)
Q Consensus 92 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-~~---~~a~~~~~~~~~~~~~~~~~~~~~ 167 (460)
|...|-.|...|...|+++.|...|.+..+.. ++++..+..+-.++... |. .++..+|+++.... +-|+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 44555566666666666666666665555431 22333333333322221 11 44445555554442 223333444
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhC
Q 012577 168 LIDIKGQSNDLTGMDQVVEAMKSE 191 (460)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~m~~~ 191 (460)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 444455555555555555555544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.37 Score=46.13 Aligned_cols=221 Identities=13% Similarity=0.101 Sum_probs=118.0
Q ss_pred CCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhH------------HHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 012577 57 DFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVV------------YRTLLANCVAGNNVKKAEEVFNRMKDKGF 124 (460)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 124 (460)
.|.++.|..+.......-.++.|+..|-+...- +.+.. -.+=+.+ --|++++|.++|-+|-++.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh
Confidence 467888888888887778888888888765432 22211 1111222 24889999999888765532
Q ss_pred C----CChhhhHHHHHHHHhcCc----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHh------
Q 012577 125 P----VTSFACNQLLILYKRLDK----KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKS------ 190 (460)
Q Consensus 125 ~----~~~~~~~~ll~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~------ 190 (460)
. ....-|..+...+...|. +.....|+.+-.. -.+...|......|.+.|+.+.-.+.+-.+..
T Consensus 766 Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~--fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~ 843 (1189)
T KOG2041|consen 766 AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGET--FAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEV 843 (1189)
T ss_pred hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHH
Confidence 1 122234444444433222 2222333333221 12333455555556666655544333322211
Q ss_pred --CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHH-
Q 012577 191 --EGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVC- 267 (460)
Q Consensus 191 --~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 267 (460)
..++-+....-.+..++.+.|.-++|.+.|-+- +. | ...+..|...+++.+|.++-++..- |.+.+.
T Consensus 844 la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQW~~avelaq~~~l-~qv~tli 913 (1189)
T KOG2041|consen 844 LARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQWGEAVELAQRFQL-PQVQTLI 913 (1189)
T ss_pred HHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHH
Confidence 123455666667777888888888777665332 21 1 1455667777778777777665432 211111
Q ss_pred -------------HHHHHHHHccCCHHHHHHHHHHHHh
Q 012577 268 -------------MAAIEAWGKLNKVEEAEAVFKRMSK 292 (460)
Q Consensus 268 -------------~~li~~~~~~~~~~~a~~~~~~m~~ 292 (460)
.--|..+.+.|+.-+|-+++.+|.+
T Consensus 914 ak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 914 AKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 1124445566666666666666654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0047 Score=41.26 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=20.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 012577 309 YADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQ 361 (460)
Q Consensus 309 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 361 (460)
|.+.+++++|.+.++.+...+ +.+...+......+.+.|++++|.+.|+...
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 333444444444444444331 2233333334444444444444444444443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.032 Score=47.90 Aligned_cols=99 Identities=11% Similarity=0.059 Sum_probs=70.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLS--TKHYTALLKVYADHKMLSKGKDLVKQMAESG--CHIGPLAWDALV 341 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li 341 (460)
.|...+..+.+.|++++|...|+.+.+..+... ...+..+...|...|++++|...|+.+.+.- .+.....+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 355555555666888888888888887543311 2466778888888899999999988887641 112345555566
Q ss_pred HHHHcCCChhhHHHHHHHHHHhC
Q 012577 342 KLHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
..+...|+.++|..+|+.+.+.+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 77778899999999999888765
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.011 Score=45.99 Aligned_cols=59 Identities=24% Similarity=0.340 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012577 336 AWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRM 396 (460)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 396 (460)
+...++..+...|++++|.++.+.+...++ .+...|..+|.+|...|+..+|.++|+++
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP--~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP--YDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST--T-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444444455555555555555554432 23445555555555555555555555544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.22 Score=41.22 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=26.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 012577 203 LAKHYVSGGRKEKAEAMLKEMEGDNLKE--HRWTCRLLLPLYAELGKADQVARIWKLC 258 (460)
Q Consensus 203 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 258 (460)
....+...|++++|...|+.+....+.. -....-.++.++.+.|+++.|...++..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~f 68 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERF 68 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344555666666666666665532211 1122334444555555555555555543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0082 Score=46.72 Aligned_cols=116 Identities=11% Similarity=0.061 Sum_probs=72.8
Q ss_pred HHcCCCHHHHHHHHHHHHhC--C-CCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChh
Q 012577 103 CVAGNNVKKAEEVFNRMKDK--G-FPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLT 179 (460)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~--g-~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 179 (460)
....++.+.+...+.++... | +-|+...+.-+ ......+..+. ..+...++..+...|+++
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~---------~~~r~~l~~~~-------~~~~~~l~~~~~~~~~~~ 79 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWV---------EPERERLRELY-------LDALERLAEALLEAGDYE 79 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTH---------HHHHHHHHHHH-------HHHHHHHHHHHHHTT-HH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHH---------HHHHHHHHHHH-------HHHHHHHHHHHHhccCHH
Confidence 35567888888888887753 2 22221110100 11112222221 235566788888999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh-----CCCCCCHHHH
Q 012577 180 GMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEG-----DNLKEHRWTC 235 (460)
Q Consensus 180 ~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 235 (460)
.|.++.+.+.... +.|...|..+|.+|...|+...|.+.|+.+.+ .|+.|+..+-
T Consensus 80 ~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 80 EALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 9999999998876 66888999999999999999999999988753 4888877553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0065 Score=40.57 Aligned_cols=58 Identities=21% Similarity=0.042 Sum_probs=45.1
Q ss_pred HHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 012577 170 DIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNL 228 (460)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 228 (460)
..|.+.+++++|.++++.+...+ +.+...|.....++.+.|++++|...|+...+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 46777888888888888888775 45677777788888888888888888888876543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.22 Score=39.29 Aligned_cols=128 Identities=13% Similarity=0.108 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHH
Q 012577 261 NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGC-HIGPLAWDA 339 (460)
Q Consensus 261 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ 339 (460)
.|++..--.|..+....|+..+|...|++...--.-.|......+.++....+++..|...++.+.+... .-++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4555555556666666666666666666665544444555666666666666666666666666655320 002233344
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 012577 340 LVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEK 391 (460)
Q Consensus 340 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 391 (460)
+.+.+...|....|..-|+...... |+...-......+.+.|+..++..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~y---pg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYY---PGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhC---CCHHHHHHHHHHHHHhcchhHHHH
Confidence 5566666666666666666665432 333333333334555555555443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.46 Score=42.75 Aligned_cols=162 Identities=14% Similarity=0.099 Sum_probs=86.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCHH------HHHHHHHHHHc---cCCHHHHHHHHHHHHhcccCcCHHHHHHHHH
Q 012577 237 LLLPLYAELGKADQVARIWKLCESNPWLD------VCMAAIEAWGK---LNKVEEAEAVFKRMSKTWKKLSTKHYTALLK 307 (460)
Q Consensus 237 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 307 (460)
.++-+|....+++...++.+.+...|+.. .-....-++.+ .|+.++|++++..+......+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445666666666666666655543221 11123344445 6777778877777655555667777777766
Q ss_pred HHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-hh---hHHHHH---HHHHHhCCC---Cc
Q 012577 308 VYAD---------HKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGE-VE---KADSIL---LKAQQQNKF---KP 368 (460)
Q Consensus 308 ~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~---~a~~~~---~~~~~~~~~---~~ 368 (460)
.|-. ....++|...|.+.-+. .||...--.++..+...|. .+ +..++- ..+..+.|. ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 6532 12356666666665543 2443322222222222332 22 222222 111111222 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 369 MFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
+--.+.+++.+..-.|+.++|.+..++|.+..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 33445678888888899999999999988764
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.45 Score=42.25 Aligned_cols=277 Identities=15% Similarity=0.117 Sum_probs=169.2
Q ss_pred HhhCHHHHHHHHHhcccC-CCchhHHHHHHHH--HHcCCCHHHHHHHHHHHHhCCCCCChhhhHH----HHHHHHhcCc-
Q 012577 72 KLRGLQKAESYIQKIPES-FRGEVVYRTLLAN--CVAGNNVKKAEEVFNRMKDKGFPVTSFACNQ----LLILYKRLDK- 143 (460)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~----ll~~~~~~~~- 143 (460)
-.|+-..|.+.-.+..+. .-|....-.++.+ -.-.|+++.|.+-|+.|... +.+--. |.-...+.|.
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHHhcccH
Confidence 457778888877665432 2344444444433 34579999999999999874 333222 2222334555
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhC-CCCCCHH--HHHHHHHHHH---hCCChHHHH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSE-GIEPDSS--TQAILAKHYV---SGGRKEKAE 217 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~--~~~~l~~~~~---~~~~~~~a~ 217 (460)
+.|.++-+..-..- +--...+...+...+..|||+.|+++++.-... -+.++.. .-..|+.+-. -.-+...|.
T Consensus 171 eaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 55555555444331 333467888999999999999999999887654 3345432 2223333222 123455666
Q ss_pred HHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHhcc-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-c
Q 012577 218 AMLKEMEGDNLKEHRW-TCRLLLPLYAELGKADQVARIWKLCES-NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT-W 294 (460)
Q Consensus 218 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~ 294 (460)
..-.+..+ +.||-. .-..-..++.+.|+..++-.+++.+-+ .|....+... .+.+.|+. ++.-++...+. .
T Consensus 250 ~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY--~~ar~gdt--a~dRlkRa~~L~s 323 (531)
T COG3898 250 DDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLY--VRARSGDT--ALDRLKRAKKLES 323 (531)
T ss_pred HHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHH--HHhcCCCc--HHHHHHHHHHHHh
Confidence 55555443 344432 222345778899999999999987655 5555543322 23444543 33333322211 1
Q ss_pred cCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-cCCChhhHHHHHHHHHH
Q 012577 295 KKL-STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHV-EGGEVEKADSILLKAQQ 362 (460)
Q Consensus 295 ~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~ 362 (460)
.+| +..+...+..+-...|++..|..--+...+. .|....|..|.+.-. ..|+-.++...+.+..+
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 222 5566777788888899998888777766653 577888877777654 45999999999888765
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.78 Score=44.40 Aligned_cols=338 Identities=13% Similarity=0.121 Sum_probs=184.3
Q ss_pred CCCCCHHHHH-----HHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhC---HHHHHHHHHhcccCC
Q 012577 19 GNDLSRAEIA-----LAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRG---LQKAESYIQKIPESF 90 (460)
Q Consensus 19 ~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~ 90 (460)
|.+++.+.|. .++..+...+.+..|+++-.++.... ......|.....-+.+..+ -+-+..+-+++....
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 7788777665 45777888899999999998876432 1125677777777766633 222333333343322
Q ss_pred CchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC----CChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHH
Q 012577 91 RGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFP----VTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSY 165 (460)
Q Consensus 91 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~----~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~ 165 (460)
..-.+|..+.+..-..|+++-|..+++.=...+.. .+..-+...+.-+...|+ +-...++-.+... .+...+
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l 581 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSL 581 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHH
Confidence 34456777777777889999998887642221100 011122222333333333 2222222222221 001111
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHH--HHH----HhCCCCCCHHHHHHHH
Q 012577 166 KILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAML--KEM----EGDNLKEHRWTCRLLL 239 (460)
Q Consensus 166 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~--~~~----~~~~~~~~~~~~~~l~ 239 (460)
+....+...|..+|.+..++ .|..+ +-..|-...+. ++..-| +.. ...+..|+ .....
T Consensus 582 ------~~~l~~~p~a~~lY~~~~r~---~~~~~---l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~---lk~~a 645 (829)
T KOG2280|consen 582 ------FMTLRNQPLALSLYRQFMRH---QDRAT---LYDFYNQDDNH-QALASFHLQASYAAETIEGRIPA---LKTAA 645 (829)
T ss_pred ------HHHHHhchhhhHHHHHHHHh---hchhh---hhhhhhcccch-hhhhhhhhhhhhhhhhhcccchh---HHHHH
Confidence 11122344455666554432 11111 11122222222 222221 110 01222232 23344
Q ss_pred HHHHhcCChhHH----------HHHHHHhccC----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHH
Q 012577 240 PLYAELGKADQV----------ARIWKLCESN----PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTAL 305 (460)
Q Consensus 240 ~~~~~~~~~~~a----------~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 305 (460)
..+.+.....-. +.+.+.+... -...+.+--+.-+...|+..+|.++-.+.+- ||-..|-.-
T Consensus 646 ~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk 721 (829)
T KOG2280|consen 646 NAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLK 721 (829)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHH
Confidence 444444331111 1222222221 1122445556667778999999888776553 688888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 012577 306 LKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGD 385 (460)
Q Consensus 306 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (460)
+.+++..+++++-+++-+... .+.-|.-++.+|.+.|+.++|.+++.+.. |. + -...+|.+.|+
T Consensus 722 ~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~l-~------ekv~ay~~~~~ 785 (829)
T KOG2280|consen 722 LTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG---GL-Q------EKVKAYLRVGD 785 (829)
T ss_pred HHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC---Ch-H------HHHHHHHHhcc
Confidence 999999999988777655432 25567789999999999999999987652 21 1 56778999999
Q ss_pred HHHHHHHHHHHH
Q 012577 386 IHSTEKIFHRMR 397 (460)
Q Consensus 386 ~~~a~~~~~~m~ 397 (460)
+.+|.+.--+-+
T Consensus 786 ~~eAad~A~~~r 797 (829)
T KOG2280|consen 786 VKEAADLAAEHR 797 (829)
T ss_pred HHHHHHHHHHhc
Confidence 999988765443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.54 Score=42.60 Aligned_cols=145 Identities=12% Similarity=0.113 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHH-hccCCCHHHH-HHHHHH
Q 012577 197 SSTQAILAKHYVSGGRKEKAEAMLKEMEGDN-LKEHRWTCRLLLPLYAELGKADQVARIWKL-CESNPWLDVC-MAAIEA 273 (460)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~-~~li~~ 273 (460)
..+|..+++...+..-.+.|..+|-++.+.+ +.++.+.+++++..++ .|+..-|..+|+. +...||...| +-.+.-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3455555555555555666666666665555 3455555555555443 4455555555552 3334444433 233444
Q ss_pred HHccCCHHHHHHHHHHHHhcccCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012577 274 WGKLNKVEEAEAVFKRMSKTWKKLS--TKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHV 345 (460)
Q Consensus 274 ~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (460)
+...++-..|..+|+....+ +..+ ...|..+|..-..-|++..+..+=+.|.+. -|...+...+...|.
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 45556666666666644332 1112 345666666666666666666665555553 344444444444443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.014 Score=39.50 Aligned_cols=64 Identities=17% Similarity=0.183 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhC---C-CCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 335 LAWDALVKLHVEGGEVEKADSILLKAQQQN---K-FKPM-FSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
.+++.+...|...|++++|+..|++..+.. | -.|+ ..++..+..++...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345556666666666666666666654321 1 1121 34556666667777777777777666543
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.051 Score=42.09 Aligned_cols=93 Identities=9% Similarity=-0.143 Sum_probs=67.5
Q ss_pred HHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 012577 169 IDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKA 248 (460)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 248 (460)
.--+...|++++|..+|.-+...+ .-+..-|..|..++-..+++++|+..|......+. -|+..+-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 334567889999999998887665 45566677777778888889999888887665443 2333444677888888888
Q ss_pred hHHHHHHHHhccCCC
Q 012577 249 DQVARIWKLCESNPW 263 (460)
Q Consensus 249 ~~a~~~~~~~~~~~~ 263 (460)
+.|...|+.....|.
T Consensus 122 ~~A~~~f~~a~~~~~ 136 (165)
T PRK15331 122 AKARQCFELVNERTE 136 (165)
T ss_pred HHHHHHHHHHHhCcc
Confidence 888888887766543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.027 Score=47.25 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=77.9
Q ss_pred HHHHHHhcccCCCchhHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHH
Q 012577 79 AESYIQKIPESFRGEVVYRTLLANCVA-----GNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLM 153 (460)
Q Consensus 79 a~~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~ 153 (460)
.+..|.......++..+|-+.+..+.. .+.++-....++.|.+-|+..|..+|+.|+..+-+..-
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf---------- 122 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF---------- 122 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------
Confidence 345566666545677777777776653 35677777788889999999999999998887654431
Q ss_pred HHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh
Q 012577 154 EKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRK 213 (460)
Q Consensus 154 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~ 213 (460)
.|... +....-.|-+ +-+-+++++++|...|+.||..+-..|++++.+.+-.
T Consensus 123 -----iP~nv-fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 123 -----IPQNV-FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred -----ccHHH-HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 22211 1111111221 2234678888888888888888888888888777654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.81 Score=43.53 Aligned_cols=53 Identities=13% Similarity=0.086 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 012577 234 TCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSK 292 (460)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 292 (460)
+...+..-+.+...+..|-++|..+... ..+++.....+++.+|..+-+...+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH------HHHhhheeecccchHhHhhhhhCcc
Confidence 3333444444455556666666655321 2345556666677777666655444
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.59 Score=44.31 Aligned_cols=160 Identities=14% Similarity=0.109 Sum_probs=94.4
Q ss_pred hhHHHHHHHHHhhCHHHHHHHHHhcccC--CCc------hhHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCChh
Q 012577 62 DYASCLDLIAKLRGLQKAESYIQKIPES--FRG------EVVYRTLLANCVA----GNNVKKAEEVFNRMKDKGFPVTSF 129 (460)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~------~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~ 129 (460)
....++...+-.|+-+.+++.+....+. ... ...|+..+..++. ....+.|.++++.+.+. -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 3555666667777777777777665442 111 1234444444433 34567777778777765 35555
Q ss_pred hhHHHHH-HHHhcCc-hHHHHHHHHHHHc--CC-CCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012577 130 ACNQLLI-LYKRLDK-KKVADVLLLMEKE--NV-KLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILA 204 (460)
Q Consensus 130 ~~~~ll~-~~~~~~~-~~a~~~~~~~~~~--~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~ 204 (460)
.|...-. .+...|+ ++|.+.|+..... .. +.....+--+...+.-..+|++|.+.|..+.+.. .-+..+|.-+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 5544433 4444555 7777777754421 10 1122344456777888999999999999998764 22344444333
Q ss_pred H-HHHhCCCh-------HHHHHHHHHHH
Q 012577 205 K-HYVSGGRK-------EKAEAMLKEME 224 (460)
Q Consensus 205 ~-~~~~~~~~-------~~a~~~~~~~~ 224 (460)
. ++...++. ++|..+|.+..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3 34466777 78888887764
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.16 Score=48.10 Aligned_cols=162 Identities=15% Similarity=0.162 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhccCCCHH---------HHHHHHHHHHc----cCCHHHHHHHHHHHHhcccCcCHH
Q 012577 234 TCRLLLPLYAELGKADQVARIWKLCESNPWLD---------VCMAAIEAWGK----LNKVEEAEAVFKRMSKTWKKLSTK 300 (460)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~ 300 (460)
.+..+++..+-.||-+.+++++....+.++.. .|..++..++. ....+.|.+++..+.++ -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 44566777777788888877777665543322 34444444443 34677888888888874 35666
Q ss_pred HHHHH-HHHHHhcCCHHHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHH
Q 012577 301 HYTAL-LKVYADHKMLSKGKDLVKQMAESG--C-HIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLI 376 (460)
Q Consensus 301 ~~~~l-i~~~~~~g~~~~a~~~~~~~~~~~--~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 376 (460)
.|... ...+...|++++|.+.|+...... . +.....+--+...+.-.+++++|.+.|..+.+.+...+...+|..
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~- 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA- 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH-
Confidence 66554 355666888999988888765311 1 112233444666677788899999999888877665443333322
Q ss_pred HHHHHhcCCH-------HHHHHHHHHHHH
Q 012577 377 MDQYAKRGDI-------HSTEKIFHRMRQ 398 (460)
Q Consensus 377 ~~~~~~~g~~-------~~a~~~~~~m~~ 398 (460)
..++...|+. ++|.++|.+...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 2344556666 778888877653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.82 Score=43.12 Aligned_cols=183 Identities=14% Similarity=0.100 Sum_probs=119.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhccCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHH
Q 012577 231 HRWTCRLLLPLYAELGKADQVARIWKLCESNP--WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKV 308 (460)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 308 (460)
+..+|..-+..-...|+.+.+.-+|+++...- -...|-..+......|+.+-|..++....+--.+ +......+-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHHH
Confidence 45678888888889999999999999886532 2234555555555568988888888776665333 32222222222
Q ss_pred -HHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCChhhHH---HHHHHHHHhCCCCcCHHHHHHHHHH----
Q 012577 309 -YADHKMLSKGKDLVKQMAESGCHIGP-LAWDALVKLHVEGGEVEKAD---SILLKAQQQNKFKPMFSSYMLIMDQ---- 379 (460)
Q Consensus 309 -~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~~l~~~---- 379 (460)
.-..|++..|..+++.+.+. . |+. ..-..-+....+.|..+.+. +++..... . .-+..+...+.--
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~--~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-G--KENNGILEKLYVKFARL 449 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-c--ccCcchhHHHHHHHHHH
Confidence 33478999999999999886 3 443 33333344556778888777 44333321 1 1122222222222
Q ss_pred -HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 012577 380 -YAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 380 -~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
+.-.++.+.|..++.++.+. ++++...|..+++-+...+.
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCc
Confidence 23468899999999999987 48888999999988887764
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.29 Score=37.68 Aligned_cols=126 Identities=10% Similarity=0.019 Sum_probs=73.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 012577 96 YRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQS 175 (460)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 175 (460)
-..++..+...+........++.+...+ +.+...++.++..|++.+..+..+.+.. ..+......+++.|.+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDPQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCHHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3456666666777888888888877776 3567778888888887766555555542 12223344466667777
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012577 176 NDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSG-GRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYA 243 (460)
Q Consensus 176 ~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 243 (460)
+-++++.-++.++.. +...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 777777666665531 11122222333 6666666666541 13445555555443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0082 Score=40.74 Aligned_cols=62 Identities=19% Similarity=0.148 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012577 163 FSYKILIDIKGQSNDLTGMDQVVEAMKSE----GI-EPD-SSTQAILAKHYVSGGRKEKAEAMLKEME 224 (460)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (460)
.+|+.+...|...|++++|+..|++..+. |- .|+ ..+++.+..++...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677777777777777777777776532 11 111 4556667777777777777777776654
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.73 Score=41.53 Aligned_cols=82 Identities=7% Similarity=-0.049 Sum_probs=54.2
Q ss_pred CChhhhHHHHHHHHHhhCHHHHHHHHHhcccCC----Cc-hhHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCChh
Q 012577 58 FIERDYASCLDLIAKLRGLQKAESYIQKIPESF----RG-EVVYRTLLANCVA---GNNVKKAEEVFNRMKDKGFPVTSF 129 (460)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~g~~~~~~ 129 (460)
.+..+...++-+|....+++...++.+.+...+ ++ ...-....-++-+ .|+.++|++++..+......+++.
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 344455566667888888888888888887641 11 1111122334445 788889998888866666677888
Q ss_pred hhHHHHHHHH
Q 012577 130 ACNQLLILYK 139 (460)
Q Consensus 130 ~~~~ll~~~~ 139 (460)
+|..+.+.|.
T Consensus 219 ~~gL~GRIyK 228 (374)
T PF13281_consen 219 TLGLLGRIYK 228 (374)
T ss_pred HHHHHHHHHH
Confidence 8887777654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.086 Score=44.44 Aligned_cols=98 Identities=13% Similarity=0.165 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCH-HHHHHHH
Q 012577 301 HYTALLKVYADHKMLSKGKDLVKQMAESG--CHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMF-SSYMLIM 377 (460)
Q Consensus 301 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~ 377 (460)
.|+.-+..+ +.|++..|...|...++.. -.-....+-+|..++...|++++|..+|..+.+..+-.|.. ...-.+.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 355444433 4456777777777776642 01123455567777777777777777777777766554433 4556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 012577 378 DQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
....+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6777777777777777777765
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.068 Score=48.69 Aligned_cols=98 Identities=14% Similarity=0.064 Sum_probs=71.2
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHH
Q 012577 297 LSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGP----LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSS 372 (460)
Q Consensus 297 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 372 (460)
.+...++.+..+|...|++++|...|+..++. .|+. .+|..+..+|...|+.++|++.++++++.. .+ .
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels--n~---~ 145 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY--NL---K 145 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--ch---h
Confidence 35678999999999999999999999998885 3553 358899999999999999999999988742 11 2
Q ss_pred HHHHHH--HHHhcCCHHHHHHHHHHHHHcCC
Q 012577 373 YMLIMD--QYAKRGDIHSTEKIFHRMRQVGY 401 (460)
Q Consensus 373 ~~~l~~--~~~~~g~~~~a~~~~~~m~~~~~ 401 (460)
|..+.. .+....+.++..++++.+.+.|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 321111 11122344577778887877764
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.65 Score=39.80 Aligned_cols=143 Identities=11% Similarity=0.156 Sum_probs=86.5
Q ss_pred HHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 012577 169 IDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKA 248 (460)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 248 (460)
.......|++.+|...|+...... +-+...--.++.+|...|+.+.|..++..+....-.........-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 344566788888888888777654 3345566677778888888888888887765443222222333345556666666
Q ss_pred hHHHHHHHHhccCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc--ccCcCHHHHHHHHHHHHhcC
Q 012577 249 DQVARIWKLCESNP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT--WKKLSTKHYTALLKVYADHK 313 (460)
Q Consensus 249 ~~a~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g 313 (460)
.+...+-..+..+| |...-..+...+...|+.+.|.+.+-.+..+ |.. |...-..|+..+.-.|
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 66666666666666 4455566666677777777777666555543 222 3344445555554444
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.088 Score=40.84 Aligned_cols=93 Identities=9% Similarity=-0.085 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccC-CCchhHHHHHHHHHHc
Q 012577 27 IALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPES-FRGEVVYRTLLANCVA 105 (460)
Q Consensus 27 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~ 105 (460)
+......+...|++++|..+|+.+...+ +.+..-+..|..++-..++++.|...|...-.. ..|+..+--...++..
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence 3444445667788888888888777655 234444556666777778888888877764322 1234444455667777
Q ss_pred CCCHHHHHHHHHHHHh
Q 012577 106 GNNVKKAEEVFNRMKD 121 (460)
Q Consensus 106 ~~~~~~a~~~~~~m~~ 121 (460)
.|+.+.|...|....+
T Consensus 118 l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 118 MRKAAKARQCFELVNE 133 (165)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 7888888888877766
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.68 Score=38.86 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHhcccCC-CChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC
Q 012577 24 RAEIALAMANLRTRRMYGKALQLSEWLETNKKLD-FIERDYASCLDLIAKLRGLQKAESYIQKIPESFR 91 (460)
Q Consensus 24 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 91 (460)
+..+..-.....+.|++++|.+.|+.+..+.+.. ....+.-.++.++.+.++++.|...+++.....|
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP 102 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP 102 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Confidence 3444444455556677777777777777665332 2344555566666677777777776666544433
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.49 Score=36.35 Aligned_cols=126 Identities=15% Similarity=0.159 Sum_probs=80.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 012577 268 MAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG 347 (460)
Q Consensus 268 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 347 (460)
..++..+...+.......+++.+...+. .+...++.++..|++.+ ..+..+.++. ..+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 4556666667778888888888777764 46777888888888653 3344444442 12334455577778888
Q ss_pred CChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 012577 348 GEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKR-GDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYIN 417 (460)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 417 (460)
+-++++..++.++. .|...+..+... ++.+.|.+++++ ..+...|..++..+..
T Consensus 83 ~l~~~~~~l~~k~~----------~~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 83 KLYEEAVELYKKDG----------NFKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALLD 137 (140)
T ss_pred CcHHHHHHHHHhhc----------CHHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHHc
Confidence 88888888776651 122233334444 778888887774 1255678888777664
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.93 E-value=1.2 Score=40.04 Aligned_cols=57 Identities=12% Similarity=0.062 Sum_probs=37.7
Q ss_pred HHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhccc
Q 012577 30 AMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPE 88 (460)
Q Consensus 30 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (460)
.-..+.+..++..|+..+....+.. |.+..-|..-+..+...|++++|.--.++-.+
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r 111 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVR 111 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhhee
Confidence 3344566677888888887777664 44455666667777777888877766655433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.19 Score=46.78 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=24.8
Q ss_pred HHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHH
Q 012577 71 AKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRM 119 (460)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 119 (460)
.++|+++.|.+..+++ .+...|..|.....++|+++-|.+.|.+.
T Consensus 329 l~lg~L~~A~~~a~~~----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL----DDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHCT-HHHHHHHCCCC----STHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HhcCCHHHHHHHHHhc----CcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 3455555555554444 24446666666666666666666666553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.46 Score=44.39 Aligned_cols=75 Identities=20% Similarity=0.154 Sum_probs=30.7
Q ss_pred HHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 012577 242 YAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDL 321 (460)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 321 (460)
..+.|+++.|.++.+. .++...|..|.....+.|+++-|.+.|.+... |..|+-.|...|+.+...++
T Consensus 328 Al~lg~L~~A~~~a~~---~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKE---LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp HHHCT-HHHHHHHCCC---CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHH
T ss_pred HHhcCCHHHHHHHHHh---cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHH
Confidence 3344444444443322 12333444444444444444444444443322 33344444444444444444
Q ss_pred HHHHHHc
Q 012577 322 VKQMAES 328 (460)
Q Consensus 322 ~~~~~~~ 328 (460)
.+.....
T Consensus 396 ~~~a~~~ 402 (443)
T PF04053_consen 396 AKIAEER 402 (443)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 4444333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=1 Score=41.44 Aligned_cols=115 Identities=11% Similarity=0.023 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHH
Q 012577 279 KVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILL 358 (460)
Q Consensus 279 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 358 (460)
...+|.++-+...+.+.. |......+..+....++++.|...|++....+ +....+|......+.-+|+.++|.+.++
T Consensus 319 ~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455677777777776654 77777777777777788888888888888753 3344556666666677788888888888
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012577 359 KAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRM 396 (460)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 396 (460)
+..+.++.+.-.......++.|+.. ..++|++++-+-
T Consensus 397 ~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 433 (458)
T PRK11906 397 KSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYKE 433 (458)
T ss_pred HHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhhc
Confidence 8777665544444444445555554 467777766543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.59 E-value=1.8 Score=39.55 Aligned_cols=124 Identities=12% Similarity=0.031 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhcccCcCHHHHHHH----HHHHHh---cCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHH--HHc
Q 012577 280 VEEAEAVFKRMSKTWKKLSTKHYTAL----LKVYAD---HKMLSKGKDLVKQMAESGCHIG----PLAWDALVKL--HVE 346 (460)
Q Consensus 280 ~~~a~~~~~~m~~~~~~p~~~~~~~l----i~~~~~---~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~--~~~ 346 (460)
-++|+.+++.+.+-.. -|...-|.+ =..|.+ ...+.+-.++-+-+.+.|++|- ...-|.|..+ +..
T Consensus 396 dekalnLLk~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 6777777777766321 133322222 223332 2345555555556666777663 2333444333 445
Q ss_pred CCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 012577 347 GGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLV 412 (460)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 412 (460)
.|++.++.-+-.-+.+ +.|++.+|..+.-++....++++|..++.. +||+..++++-+
T Consensus 475 qgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~dskv 532 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDSKV 532 (549)
T ss_pred cccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHHHH
Confidence 6788777765544433 567788888887778888888888888774 355666665543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.24 Score=37.54 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCC-CChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC
Q 012577 21 DLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLD-FIERDYASCLDLIAKLRGLQKAESYIQKIPESFR 91 (460)
Q Consensus 21 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 91 (460)
..++..+..-.....+.|++.+|++.|+.+..+.+.+ ....+.-.++.++.+.+++++|...++...+..|
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 4566777777777888888888888888888775443 2345566678888888888888888887666544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.57 E-value=2.7 Score=41.49 Aligned_cols=100 Identities=8% Similarity=-0.008 Sum_probs=55.0
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 012577 340 LVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAK 419 (460)
Q Consensus 340 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 419 (460)
++..+.+..+.+.+..+.+..-+. ++..|..++..+++.+.++.-.++..+..+.=..-+...-..+++.+++.+
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~ 785 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-----DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNG 785 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCC
Confidence 555666677777777776654221 456888888888888866655555444433111111111344567777777
Q ss_pred Cchh-----hhHHHHHhC--CCCcCHHHHHHH
Q 012577 420 TPAY-----GIRDRMRAD--NVFPNKALAAQV 444 (460)
Q Consensus 420 ~~~~-----~~~~~m~~~--~~~p~~~~~~~l 444 (460)
.... -+.+.|... .+.-|.......
T Consensus 786 ~ltls~IkD~ii~~l~~~~~~I~qd~~~Ie~y 817 (933)
T KOG2114|consen 786 TLTLSVIKDYIIKWLNKYSTIIEQDEDAIEVY 817 (933)
T ss_pred ceEEehhHHHHHHHHHhhhHHHHhhHHHHHHH
Confidence 6222 233444433 455555555544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.17 Score=42.77 Aligned_cols=109 Identities=15% Similarity=0.215 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHH
Q 012577 298 STKHYTALLKVYAD-----HKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSS 372 (460)
Q Consensus 298 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 372 (460)
|-.+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+..- .|. ..
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf-----------------iP~-nv 127 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF-----------------IPQ-NV 127 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc-----------------ccH-HH
Confidence 67778887777754 35677777888899999999999999998887655322 221 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCchhhhH
Q 012577 373 YMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGIR 426 (460)
Q Consensus 373 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 426 (460)
+....-.|-+ +-+-+++++++|...|+.||..+-..|+.++.+.+-....+.
T Consensus 128 fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~ 179 (406)
T KOG3941|consen 128 FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVK 179 (406)
T ss_pred HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHH
Confidence 2222222222 234578899999999999999999999999999887544443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.44 E-value=1.6 Score=38.14 Aligned_cols=222 Identities=17% Similarity=0.117 Sum_probs=113.7
Q ss_pred hhcCChhHHHHHHHHHHhCC--CCCCH------HHHHHHHHHHHhCC-ChHHHHHHHHHHHhC--------CCCCCH---
Q 012577 173 GQSNDLTGMDQVVEAMKSEG--IEPDS------STQAILAKHYVSGG-RKEKAEAMLKEMEGD--------NLKEHR--- 232 (460)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g--~~~~~------~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~--- 232 (460)
.+.|+++.|..++.+..... ..|+. ..|+.-.. ..+.+ +++.|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46788888888887776532 23332 22333333 33445 777776666654332 122222
Q ss_pred --HHHHHHHHHHHhcCChhHHH---HHHHHhcc-CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHH
Q 012577 233 --WTCRLLLPLYAELGKADQVA---RIWKLCES-NPW-LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTAL 305 (460)
Q Consensus 233 --~~~~~l~~~~~~~~~~~~a~---~~~~~~~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 305 (460)
.++..++.+|...+..+... .+++.+.. .|+ ...+..-+..+.+.++.+.+.+.+..|...-.. ....+...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~ 161 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHH
Confidence 45667777777777655444 44444433 233 334444456666678888888888888875221 23444444
Q ss_pred HHHH---HhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHH----HHHHHcCCC------hhhHHHHHHHHHHhCCCCcCHH
Q 012577 306 LKVY---ADHKMLSKGKDLVKQMAESGCHIGPL-AWDAL----VKLHVEGGE------VEKADSILLKAQQQNKFKPMFS 371 (460)
Q Consensus 306 i~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l----i~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~ 371 (460)
+..+ ... ....|...+..+....+.|... ....+ +....+.++ ++...++++.+.+..+.+.+..
T Consensus 162 l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 162 LHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 4444 332 3345666666655544555543 11111 111222222 4444444553332222222322
Q ss_pred HHH---HH----HHHHHhcCCHHHHHHHHHHHH
Q 012577 372 SYM---LI----MDQYAKRGDIHSTEKIFHRMR 397 (460)
Q Consensus 372 ~~~---~l----~~~~~~~g~~~~a~~~~~~m~ 397 (460)
+-. ++ ...+.+.+++++|.++|+-..
T Consensus 241 ~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 241 AASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 222 22 233556788889988887543
|
It is also involved in sporulation []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.77 Score=40.45 Aligned_cols=196 Identities=11% Similarity=0.003 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHH----HHhCCCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHhC-CCCC---C
Q 012577 163 FSYKILIDIKGQSNDLTGMDQVVEA----MKSEGIEPD---SSTQAILAKHYVSGGRKEKAEAMLKEMEGD-NLKE---H 231 (460)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~----m~~~g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~ 231 (460)
.+|..+..+.++.|.+++++..--. ..+. .-. -..|-.+.+++-+..++.+++.+-..-... |..| .
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~ 121 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLG 121 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccc
Confidence 3555666666666666665543221 1111 111 123444444444444555555544433321 2212 0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhcc------CC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc----ccCcCH
Q 012577 232 RWTCRLLLPLYAELGKADQVARIWKLCES------NP--WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT----WKKLST 299 (460)
Q Consensus 232 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~ 299 (460)
-...-++..++...+.++++++.|+.... +| ...+|-.|...|.+..++++|.-+.....+. ++. |.
T Consensus 122 gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~ 200 (518)
T KOG1941|consen 122 GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DW 200 (518)
T ss_pred chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-ch
Confidence 12233455555556666666666654322 11 1225566666666666666666555444321 221 11
Q ss_pred H------HHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 012577 300 K------HYTALLKVYADHKMLSKGKDLVKQMAE----SGCHIG-PLAWDALVKLHVEGGEVEKADSILLKAQ 361 (460)
Q Consensus 300 ~------~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~ 361 (460)
. ....|.-++...|.+..|.+..++..+ .|-++. ......+.+.|-..|+.+.|+.-|+.+.
T Consensus 201 ~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 201 SLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred hHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 1 112233345555666666555555432 332211 1223344455555666666666655543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.91 Score=41.94 Aligned_cols=57 Identities=11% Similarity=0.020 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCChhhHHHHHHHH
Q 012577 304 ALLKVYADHKMLSKGKDLVKQMAESG-CHIGPLAWDALVKLHVEGGEVEKADSILLKA 360 (460)
Q Consensus 304 ~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 360 (460)
.+..++.+.|+.++|.+.+++|.+.. ...+......|+.++...+.+.++..++.+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 34445555666666666666665431 1112334555666666666666666666554
|
The molecular function of this protein is uncertain. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.41 E-value=1.9 Score=38.59 Aligned_cols=291 Identities=13% Similarity=0.054 Sum_probs=174.9
Q ss_pred HHHHHHHHHH--cCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHH--HhcCc-hHHHHHHHHHHHcCCCCCHH--HHHH
Q 012577 95 VYRTLLANCV--AGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILY--KRLDK-KKVADVLLLMEKENVKLTQF--SYKI 167 (460)
Q Consensus 95 ~~~~ll~~~~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~--~~~~~-~~a~~~~~~~~~~~~~~~~~--~~~~ 167 (460)
-|..|-.++. -.|+-..|.++-.+-.+. +..|......++.+- .-.|+ +.|.+-|+.|... |... -...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 3555555543 467888888777665432 334555555555532 23355 8888899988753 3222 2233
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC-CCCCHH--HHHHHHHHHH-
Q 012577 168 LIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDN-LKEHRW--TCRLLLPLYA- 243 (460)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~- 243 (460)
|.-..-+.|+.+.|.++-+..-..- +.-...+...+...|..|+++.|+++++.-.... +.++.. .-..|+.+-.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 3334456888888888888776553 2335677888888999999999999988766532 233321 1112222211
Q ss_pred --hcCChhHHHHHHHHhcc-CCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHH
Q 012577 244 --ELGKADQVARIWKLCES-NPWLD-VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGK 319 (460)
Q Consensus 244 --~~~~~~~a~~~~~~~~~-~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 319 (460)
-..+...|...-.+..+ .|+.. .--.-...+.+.|+..++-.+++.+-+..+.|+.. .+..+.+.|+ .+.
T Consensus 239 s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~ 312 (531)
T COG3898 239 SLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TAL 312 (531)
T ss_pred HHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHH
Confidence 12234444444333322 45443 33344567888999999999999888876666532 1222334443 333
Q ss_pred HHHHHHHH-cCCCC-CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 012577 320 DLVKQMAE-SGCHI-GPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYA-KRGDIHSTEKIFHRM 396 (460)
Q Consensus 320 ~~~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m 396 (460)
.-++.... ...+| +......+..+-...|++..|..--+.... ..|....|..|.+.-. ..|+-.++...+-+.
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 33333322 11233 456666677777888898888877665543 4577777777776554 448888999888888
Q ss_pred HHc
Q 012577 397 RQV 399 (460)
Q Consensus 397 ~~~ 399 (460)
.+.
T Consensus 390 v~A 392 (531)
T COG3898 390 VKA 392 (531)
T ss_pred hcC
Confidence 764
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.12 Score=47.05 Aligned_cols=66 Identities=14% Similarity=-0.109 Sum_probs=49.8
Q ss_pred CCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 012577 159 KLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDS----STQAILAKHYVSGGRKEKAEAMLKEMEGD 226 (460)
Q Consensus 159 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (460)
+.+...++.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345667778888888888888888888887766 3442 35778888888888888888888887764
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.075 Score=31.13 Aligned_cols=39 Identities=13% Similarity=0.359 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 012577 372 SYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTL 411 (460)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 411 (460)
++..+..+|.+.|++++|+++|+++.+.. +-|...|..|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 45566666677777777777777776654 4455555444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.37 Score=40.78 Aligned_cols=96 Identities=10% Similarity=0.026 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHhcccC-CCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCc----hhHHHHHHH
Q 012577 27 IALAMANLRTRRMYGKALQLSEWLETNKKL-DFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRG----EVVYRTLLA 101 (460)
Q Consensus 27 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~ll~ 101 (460)
.....-.+.+.|++..|...|....+..+- +..+..+-=|..++...|+++.|..+|..+.+..|+ +..+-.|..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 333344455556666666666666555311 112223333556666666666666666665544332 345555556
Q ss_pred HHHcCCCHHHHHHHHHHHHhC
Q 012577 102 NCVAGNNVKKAEEVFNRMKDK 122 (460)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~~~ 122 (460)
+..+.|+.++|...|++..+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 666666666666666666654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.95 Score=33.52 Aligned_cols=92 Identities=17% Similarity=0.070 Sum_probs=58.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHhcCC
Q 012577 308 VYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM--FSSYMLIMDQYAKRGD 385 (460)
Q Consensus 308 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 385 (460)
++...|+.+.|++.|.+.+.. .+-....||.-.+++.-.|+.++|.+=+++..+..|-+-. ...|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 455667777777777777665 3556677777777777777777777777777665543211 1122222334556677
Q ss_pred HHHHHHHHHHHHHcC
Q 012577 386 IHSTEKIFHRMRQVG 400 (460)
Q Consensus 386 ~~~a~~~~~~m~~~~ 400 (460)
.+.|..=|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777777666
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.99 Score=33.51 Aligned_cols=61 Identities=21% Similarity=0.309 Sum_probs=26.0
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 012577 167 ILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNL 228 (460)
Q Consensus 167 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 228 (460)
..++...+.|.-++-.+++.++...+ .+++...-.+..+|.+.|+..++..++.+.-+.|+
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444444555555555554444322 44444445555555555555555555555554443
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.64 Score=41.63 Aligned_cols=95 Identities=15% Similarity=0.067 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHH-HHHHHHH
Q 012577 300 KHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFS-SYMLIMD 378 (460)
Q Consensus 300 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~ 378 (460)
.++..+..+|.+.+++.+|+......++.+ ++|....-.=..+|...|+++.|+..|+++.+.. |+-. .-+-++.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~---P~Nka~~~el~~ 333 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE---PSNKAARAELIK 333 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC---CCcHHHHHHHHH
Confidence 345666677777777777777777777764 5566666666777777777777777777776643 3322 3333333
Q ss_pred HHHhcCCHH-HHHHHHHHHHH
Q 012577 379 QYAKRGDIH-STEKIFHRMRQ 398 (460)
Q Consensus 379 ~~~~~g~~~-~a~~~~~~m~~ 398 (460)
+-.+..... ...++|..|-.
T Consensus 334 l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 333333332 33556666653
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.8 Score=34.79 Aligned_cols=83 Identities=6% Similarity=0.005 Sum_probs=62.4
Q ss_pred hhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC----chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHH
Q 012577 60 ERDYASCLDLIAKLRGLQKAESYIQKIPESFR----GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLL 135 (460)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 135 (460)
+..+-.-.....+.|++++|.+.|+.+....| ...+--.|+.+|.+.+++++|...+++.++......-.-|...+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 33444455566788999999999999988755 34556678899999999999999999999986544445666666
Q ss_pred HHHHhcC
Q 012577 136 ILYKRLD 142 (460)
Q Consensus 136 ~~~~~~~ 142 (460)
.+++...
T Consensus 90 ~gL~~~~ 96 (142)
T PF13512_consen 90 RGLSYYE 96 (142)
T ss_pred HHHHHHH
Confidence 6554433
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.88 E-value=2.1 Score=37.69 Aligned_cols=129 Identities=12% Similarity=0.275 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhCCCCCChhhhHHHHHHHHh--cCc-----hHHHHHHHHHHHcCC---CCCHHHHHHHHHHHhhcCC-
Q 012577 109 VKKAEEVFNRMKDKGFPVTSFACNQLLILYKR--LDK-----KKVADVLLLMEKENV---KLTQFSYKILIDIKGQSND- 177 (460)
Q Consensus 109 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~--~~~-----~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~- 177 (460)
+++...+++.|.+.|+.-+..+|-+....... ..+ ..+..+|+.|++... .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44556677778888877777666664444433 111 567788888887631 2344556655544 3333
Q ss_pred ---hhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhCCC--hHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012577 178 ---LTGMDQVVEAMKSEGIEPDSS--TQAILAKHYVSGGR--KEKAEAMLKEMEGDNLKEHRWTCRLLL 239 (460)
Q Consensus 178 ---~~~a~~~~~~m~~~g~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 239 (460)
.+.+..+|+.+.+.|+..+.. ....++..+-.... ..++..+++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 356777888888877665433 23333322222211 346777888888888887776665443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.79 E-value=1.5 Score=34.31 Aligned_cols=135 Identities=10% Similarity=0.064 Sum_probs=78.3
Q ss_pred ChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHH-----HHHHHHcCCCHHHHHHHHHHHHhCCCCCChh-hhH
Q 012577 59 IERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRT-----LLANCVAGNNVKKAEEVFNRMKDKGFPVTSF-ACN 132 (460)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~ 132 (460)
+...|...++ ++..+..++|+.-|..+.+. .--.|-. ......+.|+...|...|+++-.....|-.. -..
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lekt--g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A 134 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKT--GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA 134 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH
Confidence 3334444433 34556677777777776653 1112221 2233566778888888888776654444333 112
Q ss_pred HHHHHH--HhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC
Q 012577 133 QLLILY--KRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD 196 (460)
Q Consensus 133 ~ll~~~--~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 196 (460)
-|=.+| ...|. +.+....+.+...+-+.....-..|.-+-.+.|++..|.+.|..+......|.
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 222233 33344 56666666665555444555667777788899999999999998876543444
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.8 Score=41.05 Aligned_cols=98 Identities=14% Similarity=0.064 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012577 264 LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKL 343 (460)
Q Consensus 264 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 343 (460)
...++.+..+|.+.+++..|++.-+..+..+.. |....--=..+|...|+++.|...|+.+++.. +-|..+-+.++..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 345778888999999999999999999887654 88888888899999999999999999999863 3344444445544
Q ss_pred HHcCCCh-hhHHHHHHHHHHh
Q 012577 344 HVEGGEV-EKADSILLKAQQQ 363 (460)
Q Consensus 344 ~~~~~~~-~~a~~~~~~~~~~ 363 (460)
-.+.... +...++|..|...
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 4444333 3346777777654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.72 E-value=1.1 Score=38.98 Aligned_cols=153 Identities=8% Similarity=0.003 Sum_probs=100.9
Q ss_pred hhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChh
Q 012577 173 GQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD---NLKEHRWTCRLLLPLYAELGKAD 249 (460)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~ 249 (460)
...|++.+|-..++++.+.- +.|..+++-.-.+|.-.|+.+.-...++++... +++...+.-....-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45788888888888888653 667888888888899999988888888888754 22222222233334456788888
Q ss_pred HHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcC---HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012577 250 QVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLS---TKHYTALLKVYADHKMLSKGKDLVKQ 324 (460)
Q Consensus 250 ~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~ 324 (460)
+|++.-++..+ ++ |.-.-.++...+--.|++.++.++...-.......+ ..-|-...-.+...+.++.|+++|+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 88888877655 22 444556777777778888888888765443321111 11233333445556888889988876
Q ss_pred HH
Q 012577 325 MA 326 (460)
Q Consensus 325 ~~ 326 (460)
-+
T Consensus 273 ei 274 (491)
T KOG2610|consen 273 EI 274 (491)
T ss_pred HH
Confidence 43
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.67 E-value=1.3 Score=32.86 Aligned_cols=87 Identities=17% Similarity=0.071 Sum_probs=60.8
Q ss_pred HHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCC
Q 012577 171 IKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHR---WTCRLLLPLYAELGK 247 (460)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~ 247 (460)
+....|+++.|++.|.+....- +.....||.-..++.-.|+.++|++-+++..+..-.-.. ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4677889999999998877653 557788999999998899999998888887764222122 223333445666777
Q ss_pred hhHHHHHHHHh
Q 012577 248 ADQVARIWKLC 258 (460)
Q Consensus 248 ~~~a~~~~~~~ 258 (460)
.+.|..=|+..
T Consensus 131 dd~AR~DFe~A 141 (175)
T KOG4555|consen 131 DDAARADFEAA 141 (175)
T ss_pred hHHHHHhHHHH
Confidence 77777666554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.53 Score=40.48 Aligned_cols=78 Identities=12% Similarity=0.065 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 012577 163 FSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEG-----DNLKEHRWTCRL 237 (460)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 237 (460)
.++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 467778899999999999999999999876 67899999999999999999999999998865 578887766555
Q ss_pred HHHH
Q 012577 238 LLPL 241 (460)
Q Consensus 238 l~~~ 241 (460)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.56 E-value=4 Score=38.01 Aligned_cols=148 Identities=12% Similarity=0.137 Sum_probs=77.7
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 012577 168 LIDIKGQSNDLTGMDQVVEAMKSEGIEPDS-STQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELG 246 (460)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 246 (460)
+|.-.-+..+.+.-++.-.+..+. .||- ..|..|. --......+++++|++..+.|-. .+..- ......|
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~----~lg~s-~~~~~~g 244 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--NPDCADAYILLA--EEEASTIVEAEELLRQAVKAGEA----SLGKS-QFLQHHG 244 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHHH----hhchh-hhhhccc
Confidence 344444555555555555555543 3443 3333222 22344567888888877664321 01000 0000111
Q ss_pred ChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012577 247 KADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKK-LSTKHYTALLKVYADHKMLSKGKDLVKQM 325 (460)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 325 (460)
.. .+.+..-..++-..+-..+..++-+.|+.++|.+.+++|.+.... .+......|+.++...+.+.++..++.+-
T Consensus 245 ~~---~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 245 HF---WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred ch---hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 10 011110001122223345666666788899999998888764322 23446777888888888898888888876
Q ss_pred HH
Q 012577 326 AE 327 (460)
Q Consensus 326 ~~ 327 (460)
.+
T Consensus 322 dD 323 (539)
T PF04184_consen 322 DD 323 (539)
T ss_pred cc
Confidence 44
|
The molecular function of this protein is uncertain. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.45 E-value=5.1 Score=38.86 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHhhCHHHHHHHHHhc
Q 012577 62 DYASCLDLIAKLRGLQKAESYIQKI 86 (460)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~ 86 (460)
.++.+..-++....|++|.+++..-
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555555566666666655554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.61 Score=40.13 Aligned_cols=80 Identities=11% Similarity=0.147 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCccHHHH
Q 012577 334 PLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ-----VGYVARFKQF 408 (460)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~ 408 (460)
..++..++..+...|+.+.+.+.++++....+ -+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp--~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP--YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 34566677777788888888888888876553 3566788888888888888888888887764 5788888887
Q ss_pred HHHHHHH
Q 012577 409 QTLVQAY 415 (460)
Q Consensus 409 ~~l~~~~ 415 (460)
.......
T Consensus 231 ~~y~~~~ 237 (280)
T COG3629 231 ALYEEIL 237 (280)
T ss_pred HHHHHHh
Confidence 7777773
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.37 E-value=3 Score=35.90 Aligned_cols=78 Identities=12% Similarity=0.081 Sum_probs=56.5
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccC
Q 012577 10 STLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPES 89 (460)
Q Consensus 10 ~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (460)
+.+.+|+.+-.+...+....-...+...+++..|..+|....... +-+......++.+|...|+.+.|..++..++..
T Consensus 120 sqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 120 SQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred HHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 445555555444344445555566778899999999998887764 445667777888899999999999999998865
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.19 Score=29.34 Aligned_cols=27 Identities=4% Similarity=0.005 Sum_probs=14.4
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSE 191 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~ 191 (460)
+..+...|...|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444455555555555555555555544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.03 E-value=1.9 Score=32.15 Aligned_cols=139 Identities=9% Similarity=0.056 Sum_probs=73.5
Q ss_pred HHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHH
Q 012577 34 LRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAE 113 (460)
Q Consensus 34 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 113 (460)
+.-.|..++-.++........ +..-++=+|--....-+-+...++++.+-+. -|. ..+|+.....
T Consensus 12 ~ildG~V~qGveii~k~v~Ss----ni~E~NWvICNiiDaa~C~yvv~~LdsIGki-FDi----------s~C~NlKrVi 76 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS----NIKEYNWVICNIIDAADCDYVVETLDSIGKI-FDI----------SKCGNLKRVI 76 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS-----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG-S-G----------GG-S-THHHH
T ss_pred HHHhchHHHHHHHHHHHcCcC----CccccceeeeecchhhchhHHHHHHHHHhhh-cCc----------hhhcchHHHH
Confidence 445677777777777666543 2223333343333444445555555555432 111 2233344433
Q ss_pred HHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012577 114 EVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEG 192 (460)
Q Consensus 114 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 192 (460)
..+-.+- .+...+...+......|. +...+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+..+.|
T Consensus 77 ~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3332221 134445556666666666 66667777776644 6777777888899999999999999999888887
Q ss_pred C
Q 012577 193 I 193 (460)
Q Consensus 193 ~ 193 (460)
+
T Consensus 151 ~ 151 (161)
T PF09205_consen 151 L 151 (161)
T ss_dssp -
T ss_pred h
Confidence 5
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.88 E-value=6.9 Score=38.20 Aligned_cols=118 Identities=14% Similarity=-0.004 Sum_probs=51.9
Q ss_pred cCCCHHHHHHHHHHHHh-------CCCCCChhhhHHHHHHHHhcC-----c-hHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012577 105 AGNNVKKAEEVFNRMKD-------KGFPVTSFACNQLLILYKRLD-----K-KKVADVLLLMEKENVKLTQFSYKILIDI 171 (460)
Q Consensus 105 ~~~~~~~a~~~~~~m~~-------~g~~~~~~~~~~ll~~~~~~~-----~-~~a~~~~~~~~~~~~~~~~~~~~~li~~ 171 (460)
..++++.|+..|..+.+ .| .+.....+-.+|.+.. + ..|..++......| .|+....-..+..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 34455555555555444 33 2334444444444432 1 44555555555555 3444333222222
Q ss_pred Hhh-cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hCCChHHHHHHHHHHHhCC
Q 012577 172 KGQ-SNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYV--SGGRKEKAEAMLKEMEGDN 227 (460)
Q Consensus 172 ~~~-~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~ 227 (460)
... ..|...|.++|......|. +....+..++.... ...+...|..++.+..+.|
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 222 2345566666666665552 22222222111111 2234556666666666655
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.81 E-value=3.6 Score=34.71 Aligned_cols=81 Identities=16% Similarity=0.001 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEG--IEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLL 239 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 239 (460)
...|+. +..-.+.|++++|.+.|+.+...- -+-...+.-.++-++.+.+++++|+..+++.....+.-...-|..-|
T Consensus 35 ~~LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNE-GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 334444 344567899999999999988652 12235566667778888999999999988887754443334455555
Q ss_pred HHHH
Q 012577 240 PLYA 243 (460)
Q Consensus 240 ~~~~ 243 (460)
.+++
T Consensus 114 kgLs 117 (254)
T COG4105 114 KGLS 117 (254)
T ss_pred HHHH
Confidence 5544
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.74 E-value=4.5 Score=35.63 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHH
Q 012577 180 GMDQVVEAMKSEGIEPDSSTQAILA 204 (460)
Q Consensus 180 ~a~~~~~~m~~~g~~~~~~~~~~l~ 204 (460)
.+.++++.+.+.|+++....|..+.
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHcCCccccccccHHH
Confidence 4555555555555555555444443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.66 E-value=5.7 Score=36.50 Aligned_cols=333 Identities=11% Similarity=0.070 Sum_probs=171.1
Q ss_pred HHHHHHhcccchhHHHHHHHHHhcccCC----CChhhhHHHHHHHHHhhCHH--------HHHHHH-------HhcccC-
Q 012577 30 AMANLRTRRMYGKALQLSEWLETNKKLD----FIERDYASCLDLIAKLRGLQ--------KAESYI-------QKIPES- 89 (460)
Q Consensus 30 ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~--------~a~~~~-------~~~~~~- 89 (460)
.++.+...|++.++..+++.+...- ++ .+..+|+.++-.+++.=-++ -+-.++ .++...
T Consensus 134 ~a~sLIe~g~f~EgR~iLn~i~~~l-lkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d 212 (549)
T PF07079_consen 134 EAHSLIETGRFSEGRAILNRIIERL-LKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFD 212 (549)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHH-hhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHh
Confidence 3455678899999988888776543 33 67778887666665531111 111111 112110
Q ss_pred -------CCchhHHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCCCChhh-hHHHHHHHHhcCchHHHHHHHHHHHcCCC
Q 012577 90 -------FRGEVVYRTLLANCVAG--NNVKKAEEVFNRMKDKGFPVTSFA-CNQLLILYKRLDKKKVADVLLLMEKENVK 159 (460)
Q Consensus 90 -------~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~m~~~g~~~~~~~-~~~ll~~~~~~~~~~a~~~~~~~~~~~~~ 159 (460)
.|.......++....-. .+..--.++++.....-+.|+-.. ...+...+.+ +.+++..+-+.+....+.
T Consensus 213 ~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~-~~e~~~~~ce~ia~~~i~ 291 (549)
T PF07079_consen 213 QRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS-DPEQVGHFCEAIASSKIE 291 (549)
T ss_pred hchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc-ChHHHHHHHHHHHHHhHH
Confidence 12222222222222211 111122222222222223343222 2223333333 324444443333332211
Q ss_pred C----CHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHH-------HHHHHHHh----CCChHHHHHHHHHHH
Q 012577 160 L----TQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQA-------ILAKHYVS----GGRKEKAEAMLKEME 224 (460)
Q Consensus 160 ~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-------~l~~~~~~----~~~~~~a~~~~~~~~ 224 (460)
+ =..++..++....+.++-..|.+.+.-+... .|+...-. .+-+..+. .-+..+-+.+++...
T Consensus 292 ~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~q 369 (549)
T PF07079_consen 292 KLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQ 369 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 1 1346777777888888888888887776654 33332111 12222221 112334455556665
Q ss_pred hCCCCCCHHHHHHHHH---HHHhcCC-hhHHHHHHHHhcc--CCCHHHHHHHH----HHHHc---cCCHHHHHHHHHHHH
Q 012577 225 GDNLKEHRWTCRLLLP---LYAELGK-ADQVARIWKLCES--NPWLDVCMAAI----EAWGK---LNKVEEAEAVFKRMS 291 (460)
Q Consensus 225 ~~~~~~~~~~~~~l~~---~~~~~~~-~~~a~~~~~~~~~--~~~~~~~~~li----~~~~~---~~~~~~a~~~~~~m~ 291 (460)
..++... .....|+. -+-+.|. -++|..+++.+.. +-|...-|.+. ..|.. ...+..-..+-+-+.
T Consensus 370 s~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~ 448 (549)
T PF07079_consen 370 SYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFIT 448 (549)
T ss_pred hhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5554321 11222322 2344555 7778888887766 23433222221 22221 234445555555566
Q ss_pred hcccCcCHH----HHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCC
Q 012577 292 KTWKKLSTK----HYTALLK--VYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNK 365 (460)
Q Consensus 292 ~~~~~p~~~----~~~~li~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 365 (460)
+.|+.|-.+ .-|.|.+ .+...|++.++.-.-..+.+ +.|++.+|.-+.-+.....++++|+.++..+
T Consensus 449 e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L----- 521 (549)
T PF07079_consen 449 EVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL----- 521 (549)
T ss_pred hcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----
Confidence 777765433 3444443 34568999998877666665 6799999999999999999999999998754
Q ss_pred CCcCHHHHHH
Q 012577 366 FKPMFSSYML 375 (460)
Q Consensus 366 ~~~~~~~~~~ 375 (460)
+|+..+++.
T Consensus 522 -P~n~~~~ds 530 (549)
T PF07079_consen 522 -PPNERMRDS 530 (549)
T ss_pred -CCchhhHHH
Confidence 466666654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=5 Score=35.13 Aligned_cols=139 Identities=12% Similarity=0.025 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 012577 261 NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHK-MLSKGKDLVKQMAESGCHIGPLAWDA 339 (460)
Q Consensus 261 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (460)
+++..+-...+.++++.++ ..+...+-.+.+. +|...-...+.++.+.+ ....+...+..+.. .++..+-..
T Consensus 139 D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~ 211 (280)
T PRK09687 139 DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIE 211 (280)
T ss_pred CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHH
Confidence 3344444444555555554 3344444444432 23333333344444332 12344444444442 245555556
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 012577 340 LVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYI 416 (460)
Q Consensus 340 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 416 (460)
.+.++.+.|+ ..+...+-...+.. + .....+.++...|.. +|...+.++.+. .||..+-...+.+|.
T Consensus 212 A~~aLg~~~~-~~av~~Li~~L~~~----~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 212 AIIGLALRKD-KRVLSVLIKELKKG----T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHccCC-hhHHHHHHHHHcCC----c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 6666666665 33444444443321 1 123455666666663 566666666653 235555555555543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.36 E-value=6.1 Score=35.94 Aligned_cols=65 Identities=14% Similarity=0.068 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHI---GPLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
...+|..++..+.+.|+++.|...+..+...+... ++...-.-.......|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666666666777777766666665532111 223333344445555666666666655544
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.33 E-value=1.2 Score=35.72 Aligned_cols=63 Identities=13% Similarity=0.064 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 012577 163 FSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD--SSTQAILAKHYVSGGRKEKAEAMLKEMEG 225 (460)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (460)
..+..+.+.|.+.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3577788888899999999999988887654443 34566777778888888888888777654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.29 E-value=3.3 Score=32.66 Aligned_cols=33 Identities=9% Similarity=0.242 Sum_probs=17.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH
Q 012577 183 QVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEK 215 (460)
Q Consensus 183 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~ 215 (460)
++++.+.+.+++|+...+..++..+.+.|++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 334444445555555566666666665555443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.13 E-value=9.5 Score=37.46 Aligned_cols=104 Identities=11% Similarity=0.117 Sum_probs=78.4
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHH
Q 012577 297 LSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLI 376 (460)
Q Consensus 297 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 376 (460)
..-.+.+--+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..+++++-.++-... + . +.-|.-+
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk--k---s--PIGy~PF 750 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK--K---S--PIGYLPF 750 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc--C---C--CCCchhH
Confidence 344556666777788899999999877654 478888988999999999998877765432 1 1 2477888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 012577 377 MDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 377 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
+.+|.+.|+.++|.+++-+.... + -.+.+|.+.|+
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l--~-------ekv~ay~~~~~ 785 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGL--Q-------EKVKAYLRVGD 785 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCCh--H-------HHHHHHHHhcc
Confidence 99999999999999999876532 1 35666777776
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=92.95 E-value=1.8 Score=35.03 Aligned_cols=79 Identities=15% Similarity=-0.001 Sum_probs=44.3
Q ss_pred HHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhCCCh
Q 012577 137 LYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSE---GIEPDSSTQAILAKHYVSGGRK 213 (460)
Q Consensus 137 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~l~~~~~~~~~~ 213 (460)
.+.+.|++.|...|-.+...+.--++.....|...|. ..|.+++.+++....+. +-.+|+..+..|+..+.+.|++
T Consensus 116 ~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 116 HWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 3445566666666666666654444444444444443 55666666666555532 2245566666666666666666
Q ss_pred HHH
Q 012577 214 EKA 216 (460)
Q Consensus 214 ~~a 216 (460)
+.|
T Consensus 195 e~A 197 (203)
T PF11207_consen 195 EQA 197 (203)
T ss_pred hhh
Confidence 555
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.27 Score=27.17 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=14.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHH
Q 012577 200 QAILAKHYVSGGRKEKAEAMLKEM 223 (460)
Q Consensus 200 ~~~l~~~~~~~~~~~~a~~~~~~~ 223 (460)
|+.|...|.+.|++++|+.+|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666666666666666666663
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.77 E-value=4 Score=32.21 Aligned_cols=134 Identities=10% Similarity=0.101 Sum_probs=89.2
Q ss_pred HHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 283 AEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 283 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
-.++++.+.+.++.|+...+..+++.+.+.|++... ..+...++-+|.......+-.+.. ....+.++--.|.+
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHH
Confidence 346667777888999999999999999999987654 444556677777666655544433 34555555555555
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHHh
Q 012577 363 QNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMRA 431 (460)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~ 431 (460)
+-+ ..+..+++.+...|++-+|.++.+.....+ .+ .-..++.+-.+.++ .-.+++.-.+.
T Consensus 87 RL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~---~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 87 RLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVD-SV---PARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred Hhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cC---CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 432 256678888999999999999998764432 11 23456777777777 23444444443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.74 E-value=5.1 Score=33.38 Aligned_cols=200 Identities=16% Similarity=0.031 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC-HHHHHHHHH-
Q 012577 197 SSTQAILAKHYVSGGRKEKAEAMLKEMEGD-NLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NPW-LDVCMAAIE- 272 (460)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~li~- 272 (460)
...+......+...+++..+...+...... ........+......+...+++..+...+..... .+. .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344455555555555555555555554431 1222334444444555555555555555554443 111 111222222
Q ss_pred HHHccCCHHHHHHHHHHHHhccc--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCC
Q 012577 273 AWGKLNKVEEAEAVFKRMSKTWK--KLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHI-GPLAWDALVKLHVEGGE 349 (460)
Q Consensus 273 ~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~ 349 (460)
.+...|+++.|...+........ ......+......+...++.+.+...+....... +. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 56666777777777776644211 1122333333444556677777777777776652 23 35666667777777777
Q ss_pred hhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 350 VEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
++.|...+.......+. ....+..+...+...+..+++...+.+....
T Consensus 218 ~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELDPD--NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhCcc--cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777776554321 1233344444444566677777777777664
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.72 E-value=6.4 Score=34.47 Aligned_cols=18 Identities=6% Similarity=-0.090 Sum_probs=11.5
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 012577 309 YADHKMLSKGKDLVKQMA 326 (460)
Q Consensus 309 ~~~~g~~~~a~~~~~~~~ 326 (460)
+.+.++++.|.+.|+-..
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 345677777777776543
|
It is also involved in sporulation []. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.32 Score=26.87 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012577 372 SYMLIMDQYAKRGDIHSTEKIFHRMR 397 (460)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 397 (460)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677888888888888888888854
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.61 E-value=5.4 Score=33.37 Aligned_cols=24 Identities=8% Similarity=0.124 Sum_probs=11.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Q 012577 97 RTLLANCVAGNNVKKAEEVFNRMK 120 (460)
Q Consensus 97 ~~ll~~~~~~~~~~~a~~~~~~m~ 120 (460)
..-..+|....++++|...+.+..
T Consensus 35 ekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 35 EKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHH
Confidence 333344555555555555554443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.54 E-value=4.1 Score=31.75 Aligned_cols=51 Identities=8% Similarity=0.002 Sum_probs=25.8
Q ss_pred HhhCHHHHHHHHHhcccCCCchhHHHH-HHHHHHcCCCHHHHHHHHHHHHhC
Q 012577 72 KLRGLQKAESYIQKIPESFRGEVVYRT-LLANCVAGNNVKKAEEVFNRMKDK 122 (460)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~m~~~ 122 (460)
+.++.+++..++.-+.-..|....... -...+.+.|+|.+|..+|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 445566666666555443333222211 122345566666776666666554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.24 E-value=13 Score=37.01 Aligned_cols=183 Identities=12% Similarity=0.125 Sum_probs=103.7
Q ss_pred CChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCc-hhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHH
Q 012577 58 FIERDYASCLDLIAKLRGLQKAESYIQKIPESFRG-EVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLI 136 (460)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 136 (460)
..+.....-+..+.+...++-|..+.+.-...... ..........+.+.|++++|...|-+-+.. +.|. .+|.
T Consensus 332 L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~ 405 (933)
T KOG2114|consen 332 LIEKDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIK 405 (933)
T ss_pred eeeccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHH
Confidence 44556677788888888888888888775532111 123344455566789999999888776543 2222 1233
Q ss_pred HHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH
Q 012577 137 LYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEK 215 (460)
Q Consensus 137 ~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~ 215 (460)
-|..... .....+++.+.+.|+ .+...-..|+.+|.+.++.++-.++.+... .|... .-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~--fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWF--FDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Cccee--eeHHHHHHHHHHhChHHH
Confidence 3322222 444556667777764 444555667788888888777766665544 23211 112334455555555566
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 012577 216 AEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLC 258 (460)
Q Consensus 216 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 258 (460)
|..+-..... +.... --.+...+++++|++.++.+
T Consensus 482 a~~LA~k~~~-----he~vl---~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVL---DILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcc-----CHHHH---HHHHHHhcCHHHHHHHHhcC
Confidence 5544333222 22222 22344566777777777665
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.13 E-value=17 Score=37.93 Aligned_cols=78 Identities=13% Similarity=0.008 Sum_probs=36.5
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHH--HHHHHHHHHHccCCHHH
Q 012577 205 KHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLD--VCMAAIEAWGKLNKVEE 282 (460)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~ 282 (460)
..+.....+++|--.|+..-+. .--+.+|...|+|.+|..+..++....+.. +-..|+.-+...++.-+
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~e 1017 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYE 1017 (1265)
T ss_pred HHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchh
Confidence 3334445555555555433211 123455555666666665555543322222 12344455555555555
Q ss_pred HHHHHHHHH
Q 012577 283 AEAVFKRMS 291 (460)
Q Consensus 283 a~~~~~~m~ 291 (460)
|-++..+..
T Consensus 1018 Aa~il~e~~ 1026 (1265)
T KOG1920|consen 1018 AAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHh
Confidence 555554443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.87 E-value=6.2 Score=32.39 Aligned_cols=85 Identities=18% Similarity=0.043 Sum_probs=50.6
Q ss_pred HHhhCHHHHHHHHHhcccCCCc-hhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHH
Q 012577 71 AKLRGLQKAESYIQKIPESFRG-EVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADV 149 (460)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~ 149 (460)
-..|-+..|+--|.+.....|+ +.+||-|.-.+...|+++.|.+.|+...+....-+-...|--|..|.-.+..-|.+-
T Consensus 76 DSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 76 DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHH
Confidence 3445555555556655444454 567888888888899999999999998887543333333333433333333555544
Q ss_pred HHHHHH
Q 012577 150 LLLMEK 155 (460)
Q Consensus 150 ~~~~~~ 155 (460)
+...-+
T Consensus 156 ~~~fYQ 161 (297)
T COG4785 156 LLAFYQ 161 (297)
T ss_pred HHHHHh
Confidence 444433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.62 E-value=19 Score=37.54 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=13.9
Q ss_pred HHHHHHHHhhcC--ChhHHHHHHHHHH
Q 012577 165 YKILIDIKGQSN--DLTGMDQVVEAMK 189 (460)
Q Consensus 165 ~~~li~~~~~~~--~~~~a~~~~~~m~ 189 (460)
...+|..|.+.+ .++.|++...+..
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344556666655 5555555555554
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.39 E-value=1.3 Score=38.25 Aligned_cols=99 Identities=13% Similarity=0.190 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHHHhCC---CCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012577 93 EVVYRTLLANCVAGNNVKKAEEVFNRMKDKG---FPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILI 169 (460)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g---~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 169 (460)
+.+-..++..-....+++.+...+-+++..- ..| ..+-...++.+.+.+.+++..++..=.+.|+-||.++++.+|
T Consensus 64 ~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~-~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~~c~l~ 142 (418)
T KOG4570|consen 64 SLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLR-NWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLM 142 (418)
T ss_pred eeehhhhhhccccccchhHHHHHHHHHhcCcchhhhc-cccHHHHHHHHHccChHHHHHHHhCcchhccccchhhHHHHH
Confidence 3444455555555667888888777766431 111 123345566666666678888888888889999999999999
Q ss_pred HHHhhcCChhHHHHHHHHHHhCC
Q 012577 170 DIKGQSNDLTGMDQVVEAMKSEG 192 (460)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~m~~~g 192 (460)
+.+.+.+++..|.++.-.|....
T Consensus 143 D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 143 DSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999888887777553
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.35 E-value=7.8 Score=32.50 Aligned_cols=87 Identities=17% Similarity=0.198 Sum_probs=41.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhc----ccCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHH
Q 012577 270 AIEAWGKLNKVEEAEAVFKRMSKT----WKKLST-KHYTALLKVYADHKMLSKGKDLVKQMAESG---CHIGPLAWDALV 341 (460)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li 341 (460)
.-..+.+...+.+|-..+.+-... .-.++. ..|...|-.+....++..|...++.--+.+ -+-+..+...|+
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 344555555665555444332211 011111 234444555555566666766666633221 122455666666
Q ss_pred HHHHcCCChhhHHHHH
Q 012577 342 KLHVEGGEVEKADSIL 357 (460)
Q Consensus 342 ~~~~~~~~~~~a~~~~ 357 (460)
.+| ..|+.+++..++
T Consensus 236 ~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 236 TAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHh-ccCCHHHHHHHH
Confidence 665 446666655543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.20 E-value=0.31 Score=26.55 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=12.3
Q ss_pred CCHHHHHHHHHHHHhCCChHHHH
Q 012577 195 PDSSTQAILAKHYVSGGRKEKAE 217 (460)
Q Consensus 195 ~~~~~~~~l~~~~~~~~~~~~a~ 217 (460)
-+..+|+.+...|...|++++|+
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 34555555555555555555553
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.16 E-value=9.8 Score=33.31 Aligned_cols=232 Identities=9% Similarity=-0.042 Sum_probs=112.5
Q ss_pred ChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCH----HHHHHHHHHHHhCCCCCChhhhHHH
Q 012577 59 IERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNV----KKAEEVFNRMKDKGFPVTSFACNQL 134 (460)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~a~~~~~~m~~~g~~~~~~~~~~l 134 (460)
+.......+..+...|..+-...+..-+.. ++...-...+.++.+.|+. .++...+..+... .|+...-...
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~--~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVFRLAIELCSS--KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHHHHHHHHHhC--CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 444555555555555543332222222222 4444545555555555542 3455555555332 2344444444
Q ss_pred HHHHHhcCc------hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012577 135 LILYKRLDK------KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYV 208 (460)
Q Consensus 135 l~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~ 208 (460)
+.++...+. ..+...+..... .++..+-...+.++.+.++ +.+...+-.+.+ .+|...-...+.++.
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg 184 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALN 184 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHh
Confidence 444444432 122222222222 3355555556666666665 345555555443 244444444444555
Q ss_pred hCC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 012577 209 SGG-RKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVF 287 (460)
Q Consensus 209 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 287 (460)
+.+ ....+...+..+.. .++..+-...+.++.+.|+......+.+.+. .+++ ....+.++...|.. +|...+
T Consensus 185 ~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~~--~~~a~~ALg~ig~~-~a~p~L 257 (280)
T PRK09687 185 SNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDKRVLSVLIKELK-KGTV--GDLIIEAAGELGDK-TLLPVL 257 (280)
T ss_pred cCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCChhHHHHHHHHHc-CCch--HHHHHHHHHhcCCH-hHHHHH
Confidence 442 23345555555553 2344555566667777776543334444433 3332 33566667777764 567777
Q ss_pred HHHHhcccCcCHHHHHHHHHHHH
Q 012577 288 KRMSKTWKKLSTKHYTALLKVYA 310 (460)
Q Consensus 288 ~~m~~~~~~p~~~~~~~li~~~~ 310 (460)
..+.+.. ||..+-...+.++.
T Consensus 258 ~~l~~~~--~d~~v~~~a~~a~~ 278 (280)
T PRK09687 258 DTLLYKF--DDNEIITKAIDKLK 278 (280)
T ss_pred HHHHhhC--CChhHHHHHHHHHh
Confidence 6666532 35555555555443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.10 E-value=8 Score=32.19 Aligned_cols=30 Identities=7% Similarity=0.135 Sum_probs=19.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 012577 379 QYAKRGDIHSTEKIFHRMRQVGYVARFKQF 408 (460)
Q Consensus 379 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 408 (460)
.-+..+++.+|+++|++.....+..+..-|
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 335567788888888887765544443333
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.03 E-value=4.6 Score=32.49 Aligned_cols=95 Identities=11% Similarity=0.073 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCH------HH
Q 012577 301 HYTALLKVYADHKMLSKGKDLVKQMAESGCHIGP--LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMF------SS 372 (460)
Q Consensus 301 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~ 372 (460)
.+..+...|++.|+.+.|.+.+.++.+....+.. ..+-.+|+.....+++..+...+.++........|. ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555566666666666666666666554333322 344555566666666666666655553321111111 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 012577 373 YMLIMDQYAKRGDIHSTEKIFHRMR 397 (460)
Q Consensus 373 ~~~l~~~~~~~g~~~~a~~~~~~m~ 397 (460)
|..+ .+...+++.+|-+.|-+..
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 2334567777777766554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.83 E-value=6.8 Score=30.90 Aligned_cols=135 Identities=14% Similarity=0.110 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHH
Q 012577 196 DSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRW-TCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAW 274 (460)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~ 274 (460)
+...|..-+. .++.+..++|+.-|.++.+.|...-+. .-..........|+-..|...|+++
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdei---------------- 120 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEI---------------- 120 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHH----------------
Confidence 3445554443 456677788888888877776542211 1111222333444444444444444
Q ss_pred HccCCHHHHHHHHHHHHhcccCcCHH-HHHHH--HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChh
Q 012577 275 GKLNKVEEAEAVFKRMSKTWKKLSTK-HYTAL--LKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVE 351 (460)
Q Consensus 275 ~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l--i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 351 (460)
-.....|-.. -..-| ...+..+|.++......+-+-..+-+.-...-..|.-+-.+.|++.
T Consensus 121 ----------------a~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a 184 (221)
T COG4649 121 ----------------AADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFA 184 (221)
T ss_pred ----------------hccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchH
Confidence 3322222211 01111 1123345555555555555444433333344445555556667777
Q ss_pred hHHHHHHHHHHh
Q 012577 352 KADSILLKAQQQ 363 (460)
Q Consensus 352 ~a~~~~~~~~~~ 363 (460)
+|.+.|..+...
T Consensus 185 ~A~~~F~qia~D 196 (221)
T COG4649 185 KAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHHHHcc
Confidence 777777666543
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.68 E-value=9.7 Score=32.40 Aligned_cols=281 Identities=12% Similarity=0.141 Sum_probs=160.5
Q ss_pred cCCCCCHHHHHHHHHH-HhhcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhCCChHHHHHHHHHHHhC---CC
Q 012577 156 ENVKLTQFSYKILIDI-KGQSNDLTGMDQVVEAMKSEGIEPDS---STQAILAKHYVSGGRKEKAEAMLKEMEGD---NL 228 (460)
Q Consensus 156 ~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 228 (460)
.+-.||+..=|..-.. -.+..+.++|+.-|++..+..-+... .+...++..+.+.+++++....|.++... .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 3446776543332211 13455789999999998876323333 34456788889999999999999888641 11
Q ss_pred --CCCHHHHHHHHHHHHhcCChhHHHHHHHHh----ccCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCc-
Q 012577 229 --KEHRWTCRLLLPLYAELGKADQVARIWKLC----ESNP----WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKL- 297 (460)
Q Consensus 229 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p- 297 (460)
.-+..+.+++++..+...+.+....+++.- .... .-.+-+-+...|...+.+....++++++....-..
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 123456777777777666666655555432 1111 12234567777888888888888888776542211
Q ss_pred ---C-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH-----cCCChhhHHHHHHHHH
Q 012577 298 ---S-------TKHYTALLKVYADHKMLSKGKDLVKQMAESG-CHIGPLAWDALVKLHV-----EGGEVEKADSILLKAQ 361 (460)
Q Consensus 298 ---~-------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~-----~~~~~~~a~~~~~~~~ 361 (460)
| ...|..=|+.|....+-.+...++++...-. --|.+... .+|+-|. +.|++++|..-|-++.
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHH
Confidence 1 2456667778888887777778888765422 23444333 3444443 4577877765555554
Q ss_pred HhCCC--CcCHH---HHHHHHHHHHhcCCHHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHhcCCchhhhHHHHHh--C
Q 012577 362 QQNKF--KPMFS---SYMLIMDQYAKRGDIHSTEKIFH--RMRQVGYVARFKQFQTLVQAYINAKTPAYGIRDRMRA--D 432 (460)
Q Consensus 362 ~~~~~--~~~~~---~~~~l~~~~~~~g~~~~a~~~~~--~m~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~--~ 432 (460)
+...- .|... -|-.+.+.+.+.|= .-|+ +..-..-.|.....+.|+.+|-+..- .+.-..|++ .
T Consensus 259 KNYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~NdI--~eFE~Il~~~~~ 331 (440)
T KOG1464|consen 259 KNYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQNNDI--IEFERILKSNRS 331 (440)
T ss_pred hcccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhcccH--HHHHHHHHhhhc
Confidence 43211 23222 24444555555441 1111 11111224566778888888876443 222333333 3
Q ss_pred CCCcCHHHHHHH
Q 012577 433 NVFPNKALAAQV 444 (460)
Q Consensus 433 ~~~p~~~~~~~l 444 (460)
.+..|+.+.+.+
T Consensus 332 ~IM~DpFIReh~ 343 (440)
T KOG1464|consen 332 NIMDDPFIREHI 343 (440)
T ss_pred cccccHHHHHHH
Confidence 667777666655
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.67 E-value=2.5 Score=34.26 Aligned_cols=79 Identities=15% Similarity=0.054 Sum_probs=63.6
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhhcCChh
Q 012577 103 CVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKE---NVKLTQFSYKILIDIKGQSNDLT 179 (460)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~ 179 (460)
+.+.|+ +.|.+.|-.+...+.--++.....|...|.+.+..++..++....+. +-.+|+..+.+|+..+.+.|+++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 445454 57888888898887777888888888888888779999888877654 33688999999999999999998
Q ss_pred HHH
Q 012577 180 GMD 182 (460)
Q Consensus 180 ~a~ 182 (460)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.30 E-value=7.7 Score=33.82 Aligned_cols=101 Identities=9% Similarity=-0.025 Sum_probs=69.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHH-----HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHH
Q 012577 227 NLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLD-----VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKH 301 (460)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 301 (460)
|......+...++..-....+++.+...+-.++..|+.. +-.+.+..+. .-++++++.++..=.+.|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence 444444555556655566677777777776666544321 1122333333 3356788888888888899999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 302 YTALLKVYADHKMLSKGKDLVKQMAES 328 (460)
Q Consensus 302 ~~~li~~~~~~g~~~~a~~~~~~~~~~ 328 (460)
++.+++.+.+.+++.+|..+...|...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999998887777654
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.00 E-value=2.9 Score=29.17 Aligned_cols=44 Identities=11% Similarity=-0.008 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 012577 318 GKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQ 361 (460)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 361 (460)
+.+-++.+....+.|++....+.+++|-+.+++..|.++|+.+.
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444444555555555555566555556666666555443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.45 Score=25.91 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhcCCHHHH
Q 012577 299 TKHYTALLKVYADHKMLSKG 318 (460)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~a 318 (460)
...|+.+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33444444444444444433
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.90 E-value=3.2 Score=29.27 Aligned_cols=41 Identities=7% Similarity=0.009 Sum_probs=16.7
Q ss_pred HHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 287 FKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 287 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 327 (460)
++.+...+..|++.+..+.+.+|.+.+++..|.++++.++.
T Consensus 33 lN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 33 LNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444433
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.83 E-value=12 Score=32.27 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 012577 199 TQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLC 258 (460)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 258 (460)
+++.....|..+|.+.+|.++.+..+..+. .+...+..++..+...||--.+..-++++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344555667777888888877777776543 46667777777777777755555544443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.82 E-value=4.1 Score=28.45 Aligned_cols=63 Identities=8% Similarity=0.027 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012577 279 KVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVK 342 (460)
Q Consensus 279 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 342 (460)
+.-++.+-++.+...+..|++....+.+.+|.+.+++..|..+++..+.+ +..+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 44566677777777788899999999999999999999999999987754 2334455665554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=89.77 E-value=17 Score=33.84 Aligned_cols=79 Identities=15% Similarity=0.021 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012577 145 KVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEME 224 (460)
Q Consensus 145 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (460)
++.+.-+...+.+ +-|......+..+..-.++++.|...|++....+ +....+|......+.-.|+.++|.+.+++..
T Consensus 322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3444444444444 4455555555555555666666666666666553 2234444444444555666666666666654
Q ss_pred h
Q 012577 225 G 225 (460)
Q Consensus 225 ~ 225 (460)
+
T Consensus 400 r 400 (458)
T PRK11906 400 Q 400 (458)
T ss_pred c
Confidence 4
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=89.75 E-value=18 Score=34.04 Aligned_cols=178 Identities=10% Similarity=0.042 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcc-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHh
Q 012577 233 WTCRLLLPLYAELGKADQVARIWKLCES-NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYAD 311 (460)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 311 (460)
....+++..++.+..+.-+..+-.++.. ..+-..|..++.+|... ..++-..+++++.+..+. |.+.-..|..-|.+
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk 144 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK 144 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH
Confidence 3444555555555555555555544443 33444555566666555 445555666666655443 33333444444444
Q ss_pred cCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 012577 312 HKMLSKGKDLVKQMAESGCHI------GPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGD 385 (460)
Q Consensus 312 ~g~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (460)
++.+.+..+|..+...= -| -...|..+...- ..+.+...++...+.+..|...-...+.-+-.-|....+
T Consensus 145 -ik~sk~a~~f~Ka~yrf-I~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 145 -IKKSKAAEFFGKALYRF-IPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred -hchhhHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 66666666666665441 22 112444444321 346667777777776666665555666666677888888
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 012577 386 IHSTEKIFHRMRQVGYVARFKQFQTLVQAYIN 417 (460)
Q Consensus 386 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 417 (460)
+.+|+++++.+.+.+ .-|...-..++.-+..
T Consensus 221 ~~eai~Ilk~il~~d-~k~~~ar~~~i~~lRd 251 (711)
T COG1747 221 WTEAIRILKHILEHD-EKDVWARKEIIENLRD 251 (711)
T ss_pred HHHHHHHHHHHhhhc-chhhhHHHHHHHHHHH
Confidence 888888888888766 4455555556655443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.65 E-value=16 Score=33.25 Aligned_cols=61 Identities=15% Similarity=0.006 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012577 197 SSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKE---HRWTCRLLLPLYAELGKADQVARIWKL 257 (460)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (460)
..+|..++..+.+.|+++.|...+..+...+... .+.....-+..+-..|+..+|...++.
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~ 209 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRE 209 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455555666666666666666666555432111 122222334444455555555555443
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=89.60 E-value=13 Score=32.21 Aligned_cols=124 Identities=16% Similarity=0.162 Sum_probs=77.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh-CCCCCChhhhHHHHHHHHhcCc---hHHHHHHHHHHHc-CCCCCHHHHHHHHH
Q 012577 96 YRTLLANCVAGNNVKKAEEVFNRMKD-KGFPVTSFACNQLLILYKRLDK---KKVADVLLLMEKE-NVKLTQFSYKILID 170 (460)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~ll~~~~~~~~---~~a~~~~~~~~~~-~~~~~~~~~~~li~ 170 (460)
|..|+. +...+.+|+++|+..-- ..+--|......+++......+ ..-.++.+.+... |-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 554442 23346677777763322 2344567777777776665322 2222334444332 34677777777888
Q ss_pred HHhhcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 012577 171 IKGQSNDLTGMDQVVEAMKSE-GIEPDSSTQAILAKHYVSGGRKEKAEAMLKE 222 (460)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (460)
.+++.++|.+-.++++..... +...|...|..+|......|+..-..++..+
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 888888888888888776654 4556777888888888888887766665543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.33 E-value=11 Score=31.18 Aligned_cols=201 Identities=16% Similarity=0.066 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSE-GIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLP 240 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 240 (460)
...+......+...+++..+...+...... ........+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 455566666677777777777777666542 2234455566666666666777777777777766443331 12222222
Q ss_pred -HHHhcCChhHHHHHHHHhcc-CC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCC
Q 012577 241 -LYAELGKADQVARIWKLCES-NP----WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKM 314 (460)
Q Consensus 241 -~~~~~~~~~~a~~~~~~~~~-~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 314 (460)
.+...|+++.+...+..... .| ....+......+...++.+.+...+..............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 66777777777777776533 22 1223333444466778888888888888775332135677778888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhC
Q 012577 315 LSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
++.+...+....... +.....+..+...+...+..+.+...+.......
T Consensus 218 ~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 218 YEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 889988888887753 2224445555555556677888888888876644
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.15 E-value=25 Score=34.92 Aligned_cols=77 Identities=13% Similarity=0.093 Sum_probs=38.2
Q ss_pred HHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCH
Q 012577 31 MANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNV 109 (460)
Q Consensus 31 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 109 (460)
++-+.+.+.+++|+..-+......+.-.........|..+...|++++|-+..-.|.. .+..-|..-+..++..++.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g--n~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG--NNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc--chHHHHHHHHHHhcccccc
Confidence 4445555666666666544332210001233445555556666666666666555554 3444454444444444443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.12 E-value=10 Score=36.22 Aligned_cols=44 Identities=27% Similarity=0.285 Sum_probs=22.5
Q ss_pred HhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHH
Q 012577 72 KLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRM 119 (460)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 119 (460)
+.|+++.|.++..+. .+..-|..|.++....+++..|.+.|.+.
T Consensus 649 ~lgrl~iA~~la~e~----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA----NSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhh----cchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 344555554444433 23444555555555555555555555543
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=89.05 E-value=6.2 Score=27.78 Aligned_cols=89 Identities=15% Similarity=0.028 Sum_probs=62.3
Q ss_pred cccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHH
Q 012577 37 RRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVF 116 (460)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 116 (460)
....++|-.+-+|+...+ ....-+--.-+.++...|++++|..+.+.++. ||...|-+|.. .+.|..+++..-+
T Consensus 18 ~HcHqEA~tIAdwL~~~~--~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~--pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 18 HHCHQEANTIADWLHLKG--ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCY--PDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred chHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHccchHHHHHHhcCCCCC--chHHHHHHHHH--HhhccHHHHHHHH
Confidence 445678888888887664 12233333445667888999999999999874 99999888765 4667777777777
Q ss_pred HHHHhCCCCCChhhhH
Q 012577 117 NRMKDKGFPVTSFACN 132 (460)
Q Consensus 117 ~~m~~~g~~~~~~~~~ 132 (460)
.+|...| .|....|.
T Consensus 92 ~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 92 NRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHhCC-CHHHHHHH
Confidence 7887776 33444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.02 E-value=8.7 Score=29.48 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=9.2
Q ss_pred HcCCCHHHHHHHHHHHHhC
Q 012577 104 VAGNNVKKAEEVFNRMKDK 122 (460)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~ 122 (460)
...|+|++|.++|++..+.
T Consensus 55 i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 55 IARGNYDEAARILRELLSS 73 (153)
T ss_pred HHcCCHHHHHHHHHhhhcc
Confidence 3445555555555554443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.72 E-value=6.3 Score=27.88 Aligned_cols=47 Identities=11% Similarity=0.034 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhC
Q 012577 145 KVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSE 191 (460)
Q Consensus 145 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 191 (460)
+..+-++.+....+.|++....+.+++|.+.+|+..|.++|+-++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44455555555666677777777777777777777777777766643
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.45 E-value=18 Score=32.45 Aligned_cols=120 Identities=9% Similarity=0.058 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---CCChhhHHHH
Q 012577 280 VEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVE---GGEVEKADSI 356 (460)
Q Consensus 280 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~ 356 (460)
.+.-+.++++.++.++ -+...+..++..+.+..+.++..+-++.+.... +-+...|...+..... .-.++....+
T Consensus 47 ~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 3456677888777744 366677778888888888888888888888863 4467778777776544 2346666666
Q ss_pred HHHHHHhC-----CC----CcCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 012577 357 LLKAQQQN-----KF----KPMF-------SSYMLIMDQYAKRGDIHSTEKIFHRMRQVGY 401 (460)
Q Consensus 357 ~~~~~~~~-----~~----~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 401 (460)
|.+.+..- +. .+.. ..+..+...+..+|..+.|..+++-+.+.++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 66554321 11 0111 1233334445678999999999999998765
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.37 E-value=0.37 Score=37.21 Aligned_cols=84 Identities=19% Similarity=0.234 Sum_probs=54.8
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 012577 168 LIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGK 247 (460)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 247 (460)
+++.+.+.+.++...++++.+...+...+....+.++..|++.++.++..++++... + +-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~-----yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--N-----YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--S-----S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--c-----cCHHHHHHHHHhcch
Confidence 466677778888888888888876655667778888888888877777777776211 1 222346666666676
Q ss_pred hhHHHHHHHHh
Q 012577 248 ADQVARIWKLC 258 (460)
Q Consensus 248 ~~~a~~~~~~~ 258 (460)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666655543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.27 E-value=12 Score=30.21 Aligned_cols=127 Identities=9% Similarity=0.059 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCCh-hhh--HHHHHHHHHhhCHHHHHHHHHhcccCCCch----hHHH
Q 012577 25 AEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIE-RDY--ASCLDLIAKLRGLQKAESYIQKIPESFRGE----VVYR 97 (460)
Q Consensus 25 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 97 (460)
..|..++..... +.+ +.....+.+...+ +.+. ..+ -.+...+..++++++|+..++.......|. ..--
T Consensus 55 ~~Y~~~i~~~~a-k~~-~~~~~~ekf~~~n--~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~l 130 (207)
T COG2976 55 AQYQNAIKAVQA-KKP-KSIAAAEKFVQAN--GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHHhc-CCc-hhHHHHHHHHhhc--cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHH
Confidence 345566665542 233 4444445554443 1121 111 123455677888888888888765432221 2223
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcC
Q 012577 98 TLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKEN 157 (460)
Q Consensus 98 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~ 157 (460)
.|.+.....|.+++|+.+++...+.+.. ......-.+.+...|+ .+|..-|......+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3456677788888888888876654321 1122223346777777 88888888777764
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.02 E-value=1.7 Score=23.30 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 373 YMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 373 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
|..+..+|...|++++|+..|++..+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33444444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.79 E-value=1.6 Score=24.76 Aligned_cols=27 Identities=37% Similarity=0.398 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012577 198 STQAILAKHYVSGGRKEKAEAMLKEME 224 (460)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (460)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456666666666677777666666654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.77 E-value=1.6 Score=23.44 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHh
Q 012577 199 TQAILAKHYVSGGRKEKAEAMLKEMEG 225 (460)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (460)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444445555555555555544443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.60 E-value=1.7 Score=24.60 Aligned_cols=28 Identities=11% Similarity=0.241 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 371 SSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677778888888888888888887764
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.43 E-value=20 Score=31.74 Aligned_cols=144 Identities=13% Similarity=0.051 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSE---GIEPDSSTQAILAKHYVSGGRKEKAEAML 220 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 220 (460)
.+|...++++.+. .+.|...++..=++|.-.|+.+.....++++... +++-....-..+.-++...|-+++|++.-
T Consensus 120 h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A 198 (491)
T KOG2610|consen 120 HEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQA 198 (491)
T ss_pred cHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHH
Confidence 6666677777665 3667777777778888888888888888887744 22222333344445566788899998888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCC---CHH---HHHHHHHHHHccCCHHHHHHHHHH
Q 012577 221 KEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNP---WLD---VCMAAIEAWGKLNKVEEAEAVFKR 289 (460)
Q Consensus 221 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~---~~~~li~~~~~~~~~~~a~~~~~~ 289 (460)
++..+.+. .|.....+....+...|+..++.++...-...- +.. .|--..-.+...+.++.|+++|+.
T Consensus 199 ~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 199 DRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 88777653 367777788888888899888888776544321 111 122233445566889999999974
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.13 E-value=2.1 Score=22.86 Aligned_cols=25 Identities=12% Similarity=0.277 Sum_probs=10.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 374 MLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 374 ~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
..+...+.+.|++++|++.|++..+
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion) | Back alignment and domain information |
|---|
Probab=86.31 E-value=10 Score=27.16 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=56.0
Q ss_pred HhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHH
Q 012577 35 RTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEE 114 (460)
Q Consensus 35 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 114 (460)
......++|-.+.+|+...+ .....+.-.-+..+...|++++| +..-.....||...|-+|.. .+.|--+++..
T Consensus 17 tG~HcH~EA~tIa~wL~~~~--~~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~ 90 (116)
T PF09477_consen 17 TGHHCHQEANTIADWLEQEG--EMEEVVALIRLSSLMNRGDYQEA--LLLPQCHCYPDLEPWAALCA--WKLGLASALES 90 (116)
T ss_dssp HTTT-HHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHTT-HHHH--HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHH--HHhcccCCCccHHHHHHHHH--HhhccHHHHHH
Confidence 44567789999999998876 22333344455677889999999 44444444688888877754 57888889888
Q ss_pred HHHHHHhCC
Q 012577 115 VFNRMKDKG 123 (460)
Q Consensus 115 ~~~~m~~~g 123 (460)
.+.++...|
T Consensus 91 ~l~rla~~g 99 (116)
T PF09477_consen 91 RLTRLASSG 99 (116)
T ss_dssp HHHHHCT-S
T ss_pred HHHHHHhCC
Confidence 888887776
|
The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.27 E-value=2.8 Score=22.33 Aligned_cols=30 Identities=27% Similarity=0.209 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhC
Q 012577 335 LAWDALVKLHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
..+..+...+...|++++|++.|++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 467788899999999999999999988754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.77 E-value=0.39 Score=37.09 Aligned_cols=54 Identities=24% Similarity=0.244 Sum_probs=27.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012577 270 AIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVK 323 (460)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 323 (460)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344445555555555555555544433345555555555555555455555444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.71 E-value=15 Score=28.69 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=27.7
Q ss_pred hhcCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhCCChHHHHHHHHHHHhC
Q 012577 173 GQSNDLTGMDQVVEAMKSEGIEPDSSTQA-ILAKHYVSGGRKEKAEAMLKEMEGD 226 (460)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (460)
.+.++.+.+..+++.+.-. .|...... .-...+...|++++|+++|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4555666666666666544 33322211 1122345666777777777766554
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=85.24 E-value=0.75 Score=24.45 Aligned_cols=10 Identities=20% Similarity=0.332 Sum_probs=3.6
Q ss_pred hCHHHHHHHH
Q 012577 74 RGLQKAESYI 83 (460)
Q Consensus 74 ~~~~~a~~~~ 83 (460)
|++++|.+.|
T Consensus 14 g~~~~A~~~~ 23 (33)
T PF13174_consen 14 GDYDEAIEYF 23 (33)
T ss_dssp CHHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 3333333333
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.09 E-value=77 Score=36.29 Aligned_cols=147 Identities=10% Similarity=-0.011 Sum_probs=84.1
Q ss_pred HHHHHHhhCHHHHHHHHHhcccC----CCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcC
Q 012577 67 LDLIAKLRGLQKAESYIQKIPES----FRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLD 142 (460)
Q Consensus 67 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 142 (460)
..+=.+++.+..|..++++-... ......|..+...|+..+++|...-+...-. .+...+..++. ....|
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~qil~-~e~~g 1463 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQQILE-HEASG 1463 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHHHHHH-HHhhc
Confidence 33445778888888888883211 1122334444457888888887776665311 13333343333 33344
Q ss_pred c-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhCCChHHHHHHH
Q 012577 143 K-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAIL-AKHYVSGGRKEKAEAML 220 (460)
Q Consensus 143 ~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-~~~~~~~~~~~~a~~~~ 220 (460)
+ ..|...|+.+.+.+ ++...+++-++......|.++.++-..+-..... .+....++.+ +.+-.+.+++|.....+
T Consensus 1464 ~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred cHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 4 77888888887764 4446677777777777777777776555554332 2333333332 23345667777666655
Q ss_pred H
Q 012577 221 K 221 (460)
Q Consensus 221 ~ 221 (460)
.
T Consensus 1542 ~ 1542 (2382)
T KOG0890|consen 1542 S 1542 (2382)
T ss_pred h
Confidence 4
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.94 E-value=24 Score=30.21 Aligned_cols=271 Identities=11% Similarity=0.073 Sum_probs=158.6
Q ss_pred CCCCCChhhhHHHHHHHHh--cCchHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhhcCChhHHHHHHHHHHhC---CC
Q 012577 122 KGFPVTSFACNQLLILYKR--LDKKKVADVLLLMEKENVKLTQF---SYKILIDIKGQSNDLTGMDQVVEAMKSE---GI 193 (460)
Q Consensus 122 ~g~~~~~~~~~~ll~~~~~--~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~ 193 (460)
.+-.||+..=|..-..-+- ...++|..-|+...+..-..... ....+|..+.+.+++++.+..|.++..- .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 4556777666654442222 22288888898887763233333 3455788899999999999999998632 11
Q ss_pred --CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-----C
Q 012577 194 --EPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD-----NLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-----N 261 (460)
Q Consensus 194 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~ 261 (460)
..+..+.|.++..-....+.+....+|+.-.+. +-...-.|-..+...|...+++.....+++++.. +
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 234567788887777777777777776654321 1122223445677888888888888888776543 1
Q ss_pred C---------CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-ccCcCHHHHHHHH----HHHHhcCCHHHHHH-HHHHHH
Q 012577 262 P---------WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT-WKKLSTKHYTALL----KVYADHKMLSKGKD-LVKQMA 326 (460)
Q Consensus 262 ~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li----~~~~~~g~~~~a~~-~~~~~~ 326 (460)
+ -...|..=|..|....+-.....++++...- ...|.+.....+- ....+.|++++|.. +|+...
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 1 1235777788888888888888888876542 2234444443322 23456788888764 444443
Q ss_pred H---cCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCC-------------CcCHHHHHHHHHHHHhcCCHHHHH
Q 012577 327 E---SGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKF-------------KPMFSSYMLIMDQYAKRGDIHSTE 390 (460)
Q Consensus 327 ~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~a~ 390 (460)
. .| .|...++-..+ ++..|.-+.++ .|.....+.++.+|.. +++.+-.
T Consensus 260 NYDEsG-spRRttCLKYL--------------VLANMLmkS~iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE 323 (440)
T KOG1464|consen 260 NYDESG-SPRRTTCLKYL--------------VLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFE 323 (440)
T ss_pred cccccC-CcchhHHHHHH--------------HHHHHHHHcCCCCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHH
Confidence 3 33 33333322211 12223332233 2444566777877754 5666666
Q ss_pred HHHHHHHHcCCCccHHHHH
Q 012577 391 KIFHRMRQVGYVARFKQFQ 409 (460)
Q Consensus 391 ~~~~~m~~~~~~~~~~~~~ 409 (460)
++++.-+. ++-.|+..-+
T Consensus 324 ~Il~~~~~-~IM~DpFIRe 341 (440)
T KOG1464|consen 324 RILKSNRS-NIMDDPFIRE 341 (440)
T ss_pred HHHHhhhc-cccccHHHHH
Confidence 66654433 3454554433
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.63 E-value=26 Score=30.42 Aligned_cols=72 Identities=8% Similarity=0.046 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCc--hhhhHHHH-----HhCCCCcCHHHHHHH
Q 012577 372 SYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTP--AYGIRDRM-----RADNVFPNKALAAQV 444 (460)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--~~~~~~~m-----~~~~~~p~~~~~~~l 444 (460)
+++.....|..+|.+.+|.++.++....+ +.+...|..|++.+...|+. +..-++.| ...|+..+...++..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsieewy 359 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEEWY 359 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHHHh
Confidence 44566678999999999999999999987 88899999999999999993 33333333 234887777666543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=84.60 E-value=46 Score=33.28 Aligned_cols=334 Identities=11% Similarity=0.073 Sum_probs=160.5
Q ss_pred CchHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhh-hHHHHHHHHHhhCHHHHHHHH
Q 012577 5 DISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERD-YASCLDLIAKLRGLQKAESYI 83 (460)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~ 83 (460)
+.....+++.|.+.| .++++..-.-+..+...|+...|..+...+ +++... ...++.. ..+...+...+
T Consensus 163 p~~cd~l~~~~~~~g-~lt~~d~w~R~~~al~~~~~~lA~~l~~~l------~~~~~~~a~a~~al---~~~p~~~~~~~ 232 (644)
T PRK11619 163 PNACDKLFSVWQQSG-KQDPLAYLERIRLAMKAGNTGLVTYLAKQL------PADYQTIASALIKL---QNDPNTVETFA 232 (644)
T ss_pred ChHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHhc------ChhHHHHHHHHHHH---HHCHHHHHHHh
Confidence 344556666665544 344544444455555666666665555433 111111 1122222 23344444444
Q ss_pred HhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCC--hhhhHHHHHHHHhcC-chHHHHHHHHHHHcCCC
Q 012577 84 QKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKG-FPVT--SFACNQLLILYKRLD-KKKVADVLLLMEKENVK 159 (460)
Q Consensus 84 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~~~--~~~~~~ll~~~~~~~-~~~a~~~~~~~~~~~~~ 159 (460)
...+....+.......+.-+ ...+.+.|..++....... ..+. ......+.......+ ..++...+...... .
T Consensus 233 ~~~~~~~~~~~~~~~~l~Rl-ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~ 309 (644)
T PRK11619 233 RTTGPTDFTRQMAAVAFASV-ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--S 309 (644)
T ss_pred hccCCChhhHHHHHHHHHHH-HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--c
Confidence 33321101111111112222 2456688888888875433 2222 122334433444443 46666666654433 2
Q ss_pred CCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012577 160 LTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLL 239 (460)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 239 (460)
.+......-+....+.++++.+...+..|.... .-...-.--+.+++...|+.++|...|+.+... . +|-.++
T Consensus 310 ~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~---~fYG~L 382 (644)
T PRK11619 310 QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---R---GFYPMV 382 (644)
T ss_pred CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---CcHHHH
Confidence 244445555666678999999999999886543 233444455677777789999999999987432 1 222222
Q ss_pred HHHHhcCChhHH-H----HHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCC
Q 012577 240 PLYAELGKADQV-A----RIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKM 314 (460)
Q Consensus 240 ~~~~~~~~~~~a-~----~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 314 (460)
.+ .+.|..-.. . ..-..+...| -..-+..+...|....|...+..+... .+......+...-.+.|.
T Consensus 383 Aa-~~Lg~~~~~~~~~~~~~~~~~~~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~ 454 (644)
T PRK11619 383 AA-QRLGEEYPLKIDKAPKPDSALTQGP----EMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQW 454 (644)
T ss_pred HH-HHcCCCCCCCCCCCCchhhhhccCh----HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCC
Confidence 11 112211000 0 0000000011 112244555667777777777766653 234444555555556666
Q ss_pred HHHHHHHHHHHHH-----cCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCH
Q 012577 315 LSKGKDLVKQMAE-----SGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMF 370 (460)
Q Consensus 315 ~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 370 (460)
++.+......... ..++ ..|...+..+.+.-.++.++- +..+.+..++.|+.
T Consensus 455 ~~~ai~~~~~~~~~~~~~~rfp---~~~~~~~~~~a~~~~v~~~lv-~ai~rqES~f~p~a 511 (644)
T PRK11619 455 WDLSVQATIAGKLWDHLEERFP---LAWNDEFRRYTSGKGIPQSYA-MAIARQESAWNPKA 511 (644)
T ss_pred HHHHHHHHhhchhHHHHHHhCC---cchHHHHHHHHHHcCCCHHHH-HHHHHHhcCCCCCC
Confidence 6666554433221 1111 125555555555555555442 22233334455544
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.19 E-value=7.2 Score=32.06 Aligned_cols=57 Identities=12% Similarity=0.003 Sum_probs=31.2
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhc
Q 012577 28 ALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKI 86 (460)
Q Consensus 28 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 86 (460)
...+..+.+.++..+++...+.-.+.. |.+...-..+++.|+-.|++++|..-++-.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 344455555666666666654444432 334444555666666666666666555543
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=83.82 E-value=28 Score=30.23 Aligned_cols=97 Identities=11% Similarity=0.051 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHH
Q 012577 298 STKHYTALLKVYAD-HK-MLSKGKDLVKQMAE-SGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYM 374 (460)
Q Consensus 298 ~~~~~~~li~~~~~-~g-~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 374 (460)
|..+...+++.... .+ ....-.++.+.+.. .|-.++..+...++..+++.+++.+-.++++......+..-|...|.
T Consensus 163 d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~ 242 (292)
T PF13929_consen 163 DEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWA 242 (292)
T ss_pred ChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHH
Confidence 45555555554443 11 22222333333332 23456667777777777777777777777776654433445666777
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 012577 375 LIMDQYAKRGDIHSTEKIFH 394 (460)
Q Consensus 375 ~l~~~~~~~g~~~~a~~~~~ 394 (460)
.+|+.....|+..-...+..
T Consensus 243 ~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 243 EFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHHcCCHHHHHHHhh
Confidence 77777777777665555544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=83.67 E-value=18 Score=27.85 Aligned_cols=51 Identities=10% Similarity=-0.069 Sum_probs=28.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCChhhHHHHHHHHHHh
Q 012577 311 DHKMLSKGKDLVKQMAESGCHIGP-LAWDALVKLHVEGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 311 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (460)
..++.+++..++..|.-. +|+. ..-..-...+...|++++|.++|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 366677777777776653 3332 11112223345667777777777776543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=83.46 E-value=51 Score=32.87 Aligned_cols=165 Identities=15% Similarity=0.093 Sum_probs=79.8
Q ss_pred hHHHHHHHHHH-cCCCHHHHHHHHHHHHhCCCCCChh-----hhHHHHHHHHhcCchHHHHHHHHHHHc----CCCCCHH
Q 012577 94 VVYRTLLANCV-AGNNVKKAEEVFNRMKDKGFPVTSF-----ACNQLLILYKRLDKKKVADVLLLMEKE----NVKLTQF 163 (460)
Q Consensus 94 ~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~-----~~~~ll~~~~~~~~~~a~~~~~~~~~~----~~~~~~~ 163 (460)
.++-.+...+. ...+++.|...+++.....-.++.. .-..++..+.+.+...|...++...+. +..+-..
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKAALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCchhHHH
Confidence 34444444444 4566777777776654332222211 122344455555553355555554332 1222223
Q ss_pred HHHHH-HHHHhhcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHH--hCCChHHHHHHHHHHHhCC---------C
Q 012577 164 SYKIL-IDIKGQSNDLTGMDQVVEAMKSEG---IEPDSSTQAILAKHYV--SGGRKEKAEAMLKEMEGDN---------L 228 (460)
Q Consensus 164 ~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g---~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~ 228 (460)
.+..+ +..+...+|...|.+.++.+...- ..|-..++-.++.+.. +.+..+++.+.++.+.... .
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~ 219 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVH 219 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCC
Confidence 33333 333333477887888777765431 1333344444444433 4455566666666553211 1
Q ss_pred CCCHHHHHHHHHHHH--hcCChhHHHHHHHHh
Q 012577 229 KEHRWTCRLLLPLYA--ELGKADQVARIWKLC 258 (460)
Q Consensus 229 ~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 258 (460)
.|...+|..+++.++ ..|+++.+...++.+
T Consensus 220 ~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 220 IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 233455555555443 456666666655544
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=83.13 E-value=52 Score=32.77 Aligned_cols=229 Identities=13% Similarity=0.102 Sum_probs=93.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHhccCCCHHHHHHHHHHHHc---cCC
Q 012577 204 AKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVA-RIWKLCESNPWLDVCMAAIEAWGK---LNK 279 (460)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~li~~~~~---~~~ 279 (460)
...+.-.|+++.|++++-. ..+...+.+.+...+.-|.-.+-.+... .++..-...|....+..||..|++ ..+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~td 342 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEITD 342 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTTTTT-
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhccC
Confidence 3445668999999988876 2233345555544444333222211111 111111112222456778888876 457
Q ss_pred HHHHHHHHHHHHhcccCcCHHHHHHHH-HHHHhcCCHHHHH-----------HHHHH-HHHcCCCC-CHH---HHHHHHH
Q 012577 280 VEEAEAVFKRMSKTWKKLSTKHYTALL-KVYADHKMLSKGK-----------DLVKQ-MAESGCHI-GPL---AWDALVK 342 (460)
Q Consensus 280 ~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~~~g~~~~a~-----------~~~~~-~~~~~~~~-~~~---~~~~li~ 342 (460)
..+|.++|--+....-+.....+...+ ......++++.-+ .++++ ..--++.. +.. .......
T Consensus 343 ~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A~ 422 (613)
T PF04097_consen 343 PREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAAR 422 (613)
T ss_dssp HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHHH
Confidence 788888887766542211112222222 2222223222111 11111 00001222 222 2223344
Q ss_pred HHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHH-HHHhcCC-----------HHHHHHHHHHHHHcC-----C-Ccc
Q 012577 343 LHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMD-QYAKRGD-----------IHSTEKIFHRMRQVG-----Y-VAR 404 (460)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~-----------~~~a~~~~~~m~~~~-----~-~~~ 404 (460)
-+...|++++|..+|+.+.+-+ .-....|..+. +...... ...|..+.+.....+ + ..+
T Consensus 423 ~~e~~g~~~dAi~Ly~La~~~d---~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~ 499 (613)
T PF04097_consen 423 EAEERGRFEDAILLYHLAEEYD---KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKN 499 (613)
T ss_dssp HHHHCT-HHHHHHHHHHTT-HH---HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHH
T ss_pred HHHHCCCHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHH
Confidence 5667899999999998653211 11223333332 2332223 344555555444321 1 223
Q ss_pred HHHHHHHHHH-----HHhcCCchhhhHHHHHhCCCCcCH
Q 012577 405 FKQFQTLVQA-----YINAKTPAYGIRDRMRADNVFPNK 438 (460)
Q Consensus 405 ~~~~~~l~~~-----~~~~g~~~~~~~~~m~~~~~~p~~ 438 (460)
..|+..|++. +...|+ ....++.+.+.++-|..
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~-~~~AL~~i~~L~liP~~ 537 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQ-YEQALDIIEKLDLIPLD 537 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHTT-S-S-
T ss_pred HHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHhCCCCCCC
Confidence 4556655543 233344 44556788888888853
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.80 E-value=11 Score=31.00 Aligned_cols=76 Identities=17% Similarity=0.023 Sum_probs=46.7
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDN--LKEHRWTCRLLLPL 241 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 241 (460)
.+..++.+.+.+.+++|+...++-++.. +-|...-..++..+|-.|++++|..-++-.-+.. ..+...+|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445566677777777777776666553 4455666677777777888888777666554432 22333455555543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=82.39 E-value=20 Score=28.66 Aligned_cols=30 Identities=7% Similarity=-0.042 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHhcccCCCChhhhHHHHHHHHH
Q 012577 41 GKALQLSEWLETNKKLDFIERDYASCLDLIAK 72 (460)
Q Consensus 41 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 72 (460)
+.|.+.++..-..+ |.+...++....++..
T Consensus 8 E~ark~aea~y~~n--P~DadnL~~WG~ALLE 37 (186)
T PF06552_consen 8 EHARKKAEAAYAKN--PLDADNLTNWGGALLE 37 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--cHhHHHHHHHHHHHHH
Confidence 34444444433333 4455555555544443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=82.09 E-value=4.8 Score=21.43 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 372 SYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
+|..+...|...|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5666777788888888888888877764
|
... |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=81.59 E-value=5 Score=21.37 Aligned_cols=27 Identities=22% Similarity=0.121 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHh
Q 012577 199 TQAILAKHYVSGGRKEKAEAMLKEMEG 225 (460)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (460)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555666666666666655543
|
... |
| >cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat | Back alignment and domain information |
|---|
Probab=81.34 E-value=10 Score=25.93 Aligned_cols=62 Identities=16% Similarity=0.117 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHH
Q 012577 9 HSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQ 77 (460)
Q Consensus 9 ~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 77 (460)
..+++.+.++| -++.+....+-.+-...|+.+.|.+++..+. ++ +..++.++.++...|.-.
T Consensus 22 ~~v~d~ll~~~-ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg-----~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 22 RDVCDKCLEQG-LLTEEDRNRIEAATENHGNESGARELLKRIV-QK-----EGWFSKFLQALRETEHHE 83 (88)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC-----CcHHHHHHHHHHHcCchh
Confidence 34455555544 2344444433333334455555555555544 22 124445555555444433
|
Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.28 E-value=70 Score=32.99 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 012577 95 VYRTLLANCVAGNNVKKAEEVFNRMKDK 122 (460)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 122 (460)
-|..|+..|...|+.++|+++|.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4889999999999999999999998764
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=81.19 E-value=2.5 Score=22.31 Aligned_cols=19 Identities=11% Similarity=0.093 Sum_probs=8.0
Q ss_pred HHcCCChhhHHHHHHHHHH
Q 012577 344 HVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~ 362 (460)
+.+.|++++|.+.|+++++
T Consensus 10 ~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 10 YYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 3334444444444444433
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=80.88 E-value=5.2 Score=23.35 Aligned_cols=22 Identities=14% Similarity=0.439 Sum_probs=10.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 012577 377 MDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 377 ~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444444555555555554443
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.73 E-value=3.3 Score=20.73 Aligned_cols=18 Identities=11% Similarity=0.056 Sum_probs=7.5
Q ss_pred HHHHHHHhhCHHHHHHHH
Q 012577 66 CLDLIAKLRGLQKAESYI 83 (460)
Q Consensus 66 l~~~~~~~~~~~~a~~~~ 83 (460)
+...+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 333444444444444433
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.58 E-value=25 Score=28.63 Aligned_cols=88 Identities=10% Similarity=-0.086 Sum_probs=51.1
Q ss_pred HHhhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 012577 171 IKGQSNDLTGMDQVVEAMKSEGIEPD----SSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELG 246 (460)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 246 (460)
-+.+.|++++|..-|....+.-.+.. ...|..-..++.+.+.++.|+.-..+.++.+.. .......-..+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 45678888888888888776531111 234555556677778888887777777665432 1122222334555555
Q ss_pred ChhHHHHHHHHhc
Q 012577 247 KADQVARIWKLCE 259 (460)
Q Consensus 247 ~~~~a~~~~~~~~ 259 (460)
.++.|+.=|+.+.
T Consensus 183 k~eealeDyKki~ 195 (271)
T KOG4234|consen 183 KYEEALEDYKKIL 195 (271)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555555443
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=80.51 E-value=18 Score=25.62 Aligned_cols=78 Identities=12% Similarity=0.009 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEM 223 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 223 (460)
++|..+-+.+...+- ....+--+-+..+...|++++|..+.+.+. .||...|-.|- -.+.|..+++..-+..|
T Consensus 22 qEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALc--e~rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 22 QEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALC--EWRLGLGSALESRLNRL 94 (115)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHH--HHhhccHHHHHHHHHHH
Confidence 677777777665542 133333334556778889999888887763 78888887764 35677777777777777
Q ss_pred HhCCC
Q 012577 224 EGDNL 228 (460)
Q Consensus 224 ~~~~~ 228 (460)
...|-
T Consensus 95 a~sg~ 99 (115)
T TIGR02508 95 AASGD 99 (115)
T ss_pred HhCCC
Confidence 76653
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 62.5 bits (150), Expect = 1e-10
Identities = 36/361 (9%), Positives = 105/361 (29%), Gaps = 21/361 (5%)
Query: 45 QLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGE-----VVYRTL 99
Q + +L ++ + L A + + +Y +
Sbjct: 112 QAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAV 171
Query: 100 LANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK--KKVADVLLLMEKEN 157
+ K+ V +KD G + L R D+ + L M +E
Sbjct: 172 MLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231
Query: 158 VKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAE 217
+KL +L+ + ++ L + +V P + L + + +
Sbjct: 232 LKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYP 291
Query: 218 AMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKL 277
+ ++ + L+ EL V + K + + ++
Sbjct: 292 KLHLPLKTLQCLFEKQ-------LHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQ 344
Query: 278 NKVEEAEAVFKRMSKTWKKLSTKH--YTALLKVYADHKMLSKGKDLVKQMAESGCHIGPL 335
+ A+ + ++ +++ L + + +++ +++ + G L
Sbjct: 345 WEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQALPAQGESFTTL 404
Query: 336 AWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHR 395
A + + + + Q + + Y+ ++ A+ + + +
Sbjct: 405 ARELSARTFSRHVVQRQ-----RVSGQVQALQNHYRKYLCLLASDAEVPEPCLPRQYWEA 459
Query: 396 M 396
+
Sbjct: 460 L 460
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 43.7 bits (101), Expect = 1e-04
Identities = 19/147 (12%), Positives = 43/147 (29%), Gaps = 2/147 (1%)
Query: 283 AEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVK 342
A + + + + LL+ L + Q +++ A K
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 343 LHVEGGEVEKADSIL--LKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400
+ ++ A +L Q+Q + Y +M +A++G + ++ G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 401 YVARFKQFQTLVQAYINAKTPAYGIRD 427
+ +Q A I
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIER 222
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 1e-07
Identities = 53/421 (12%), Positives = 117/421 (27%), Gaps = 110/421 (26%)
Query: 45 QLSEWLETNKKL------DFIERDYASCLDLIAKLRG-LQKAE-SYIQKIPESFRGEVVY 96
+ E K + F+ ++ C D+ + L K E +I +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFV-DNF-DCKDVQDMPKSILSKEEIDHIIMSKD--AVSGTL 65
Query: 97 RTLLANCVAGNNVKKA--EEVFNRMKDKGFPVTSFA--CNQLLILYKRLDKKKVADVLL- 151
R + + EEV + F ++ Q ++ + +++ D L
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLR--INYKFLMSPIKTEQRQPSMMTRMYIEQR--DRLYN 121
Query: 152 ---LMEKENV----KLTQFSYKILIDIKGQSNDLTGMD----QV--VEAMKSEGIEPDSS 198
+ K NV + +L ++ + G+ ++ S ++
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 199 TQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLC 258
+ +++ E +L+ ++ L + P + +D + I
Sbjct: 182 FKI----FWLNLKNCNSPETVLEMLQ--KL------LYQIDPNWTSR--SDHSSNIKLRI 227
Query: 259 ES-NPWL-----------------DVCMA-AIEAWG---KL----------NKVEEAEAV 286
S L +V A A A+ K+ + + A
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 287 FKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLA---------- 336
+ L+ +LL Y D + +DL +++ P
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRP----QDLPREV----LTTNPRRLSIIAESIRD 339
Query: 337 ----WDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKI 392
WD HV ++ L + +++ MF + H +
Sbjct: 340 GLATWDNW--KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP------SAHIPTIL 391
Query: 393 F 393
Sbjct: 392 L 392
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 3e-06
Identities = 74/473 (15%), Positives = 149/473 (31%), Gaps = 169/473 (35%)
Query: 19 GNDLSRAEIALAMANLRTRRM--------YGKALQLS-EWLETNKKLDFIERDYASCLDL 69
N S + + L + + ++L ++ + + Y +CL L
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-L 248
Query: 70 IAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAE--EVFNRMKDKGFPVT 127
+ L NV+ A+ FN
Sbjct: 249 V--LL---------------------------------NVQNAKAWNAFN---------- 263
Query: 128 SFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEA 187
+C ++L+ + K+V D L ++ L
Sbjct: 264 -LSC-KILLTTR---FKQVTDFLSAATTTHISLDHH------------------------ 294
Query: 188 MKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGK 247
S + PD +++L K Y+ + + + +E+ N L + AE +
Sbjct: 295 --SMTLTPDEV-KSLLLK-YLD----CRPQDLPREVLTTNP--------RRLSIIAESIR 338
Query: 248 ADQVARIWKLCESNPWLDV-CMA---AIEAWGKLNKVEEAE--------AVF-------- 287
D +A W + W V C IE+ LN +E AE +VF
Sbjct: 339 -DGLAT-W-----DNWKHVNCDKLTTIIES--SLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 288 KRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG 347
+S W + ++ +K+ + KQ ES I + + +K+ +E
Sbjct: 390 ILLSLIWFDVIKSDVMVVV-----NKLHKYS-LVEKQPKESTISIPSIYLE--LKVKLE- 440
Query: 348 GEVEKADSIL-----LKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYV 402
E SI+ K + P +DQY +S I H ++ + +
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIP------PYLDQY-----FYS--HIGHHLKNIEHP 487
Query: 403 ARFKQFQTLVQAYINAKTPAYG-IRDRMRADNVFPNK--ALAAQVAQVDAFRK 452
R F+ + +++ + + ++R D+ N ++ + Q+ ++
Sbjct: 488 ERMTLFRMV---FLD-----FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 4e-04
Identities = 50/340 (14%), Positives = 109/340 (32%), Gaps = 100/340 (29%)
Query: 12 LTKYAE-EGNDLSRAEIA---LAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCL 67
L KY + DL R + ++ + ++++ + L T + D
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLS------IIAESIR--DGLATWDNWKHVNCD----- 353
Query: 68 DLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVT 127
KL + ++ S P +R ++ L VF +
Sbjct: 354 ----KLTTIIES-SLNVLEPAEYRK--MFDRL--------------SVFP----PSAHIP 388
Query: 128 SFACNQLL-ILYKRLDKKKVADVL------LLMEKENVKLTQFSYKILIDIKGQSNDLTG 180
+ LL +++ + K V V+ L+EK+ + T I +++K + +
Sbjct: 389 T----ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 181 M-DQVVE------AMKSEGIEPDSSTQAI---LAKHYVSGGRKEKAEAMLKEMEGDNLKE 230
+ +V+ S+ + P Q + H LK +E
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH-------------LKNIE----HP 487
Query: 231 HRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNK----VEEAEAV 286
R T L ++ + +Q K+ + + + + +L + + +
Sbjct: 488 ERMT--LFRMVFLDFRFLEQ-----KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 287 FKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMA 326
++R+ K L+ SK DL+ ++A
Sbjct: 541 YERLVNAILDFLPKIEENLIC--------SKYTDLL-RIA 571
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 4e-04
Identities = 29/251 (11%), Positives = 80/251 (31%), Gaps = 31/251 (12%)
Query: 12 LTKYAEEGNDLSRAEIALAMANL-RTRRMYGKALQ-LSEWLETNKKLDFIERDYASCLDL 69
+ +D+ +AE +A + ++ + + L+ + L +
Sbjct: 128 EKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187
Query: 70 IA----KLRGLQKAESYIQK---IPESFRGEVVYRTLLAN----CVAGNNVKKAEEVFNR 118
IA + KA +++ + + + L N + + A E F +
Sbjct: 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247
Query: 119 ----MKDKGFPVTSFACNQLLILYKRLDKKKVADVLL-----LMEKENVKLTQFSYKILI 169
++K + L + + + A + + + K + + L
Sbjct: 248 AAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQ 307
Query: 170 DIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQA-ILAKHYVSGGRKEKAEAMLKEM----- 223
+ ++ D + ++ + + + A A + S E+A A +++
Sbjct: 308 AVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQE 367
Query: 224 ---EGDNLKEH 231
+G+ L +
Sbjct: 368 DILKGECLYAY 378
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 460 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.76 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.73 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.73 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.72 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.7 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.7 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.7 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.69 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.65 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.64 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.64 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.64 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.63 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.63 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.63 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.63 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.61 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.61 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.6 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.59 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.58 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.56 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.56 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.55 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.54 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.54 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.53 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.52 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.52 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.51 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.5 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.5 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.5 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.5 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.48 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.47 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.45 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.43 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.4 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.37 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.34 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.32 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.31 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.29 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.28 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.27 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.24 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.22 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.21 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.21 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.17 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.15 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.13 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.08 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.07 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.07 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.07 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.07 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.05 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.05 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.05 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.02 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.02 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.02 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.02 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.01 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.01 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.01 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.99 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.99 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.97 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.96 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.95 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.95 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.95 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.94 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.93 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.86 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.85 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.85 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.84 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.83 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.78 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.77 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.76 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.75 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.75 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.74 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.72 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.72 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.7 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.7 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.69 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.68 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.66 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.65 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.65 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.64 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.63 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.63 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.63 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.62 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.62 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.62 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.59 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.58 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.57 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.56 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.55 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.54 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.54 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.54 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.54 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.53 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.51 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.48 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.45 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.44 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.44 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.44 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.43 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.41 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.4 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.4 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.4 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.4 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.4 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.39 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.38 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.37 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.37 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.37 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.34 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.32 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.31 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.26 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.25 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.21 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.21 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.2 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.19 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.17 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.15 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.12 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.08 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.07 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.04 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.0 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.98 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.96 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.94 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.93 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.92 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.92 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.92 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.91 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.91 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.86 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.84 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.81 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.78 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.76 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.72 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.72 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.68 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.64 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.6 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.49 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.42 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.42 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.23 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.85 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.82 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.79 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.79 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.75 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.68 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.67 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.65 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.64 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.54 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.53 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.45 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.43 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.11 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.01 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.8 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.75 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.66 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.66 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.65 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.23 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.14 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.13 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.95 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.96 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.87 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.86 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.71 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.33 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 93.1 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 92.8 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.08 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.78 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.69 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.68 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.18 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 89.78 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.73 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 89.67 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.65 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.46 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 89.16 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 88.96 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.9 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 88.8 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 88.38 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 88.25 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.91 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 87.65 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 87.44 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 86.74 | |
| 3eiq_C | 358 | Programmed cell death protein 4; PDCD4, anti-oncog | 86.41 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 86.24 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 86.15 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 85.09 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 84.67 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 84.38 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 83.28 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.06 | |
| 2nsz_A | 129 | Programmed cell death protein 4; PDCD4, tumor supp | 82.73 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 81.69 | |
| 3eiq_C | 358 | Programmed cell death protein 4; PDCD4, anti-oncog | 81.31 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 81.0 | |
| 2ion_A | 152 | PDCD4, programmed cell death 4, PDCD4; alpha-helic | 80.38 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=300.47 Aligned_cols=411 Identities=11% Similarity=0.000 Sum_probs=257.2
Q ss_pred CCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHH
Q 012577 22 LSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLA 101 (460)
Q Consensus 22 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~ 101 (460)
.+...+..++..+.+.|++++|+.+|+.+... .|+..++..++.+|.+.|++++|..+|+++....++..+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH
Confidence 34566777888888888888888888887754 346677777888888888888888888887555567778888888
Q ss_pred HHHcCCCHHHHHHHHHHHHhC---------------CCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHH
Q 012577 102 NCVAGNNVKKAEEVFNRMKDK---------------GFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSY 165 (460)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~~~---------------g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~ 165 (460)
+|.+.|++++|.++|+++... |.+++..+|+.++.+|.+.|+ ++|.+.|+++.+.+ +.+...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHH
Confidence 888888888888888743221 233457788888888888888 78888888777653 2222222
Q ss_pred HH--------------------------------------HHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012577 166 KI--------------------------------------LIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHY 207 (460)
Q Consensus 166 ~~--------------------------------------li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~ 207 (460)
.. ++..|.+.|++++|.++|+++.+. +++..+|+.++.+|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 22 234445566666666666666544 45666666666666
Q ss_pred HhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-C-CCHHHHHHHHHHHHccCCHHHHHH
Q 012577 208 VSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-N-PWLDVCMAAIEAWGKLNKVEEAEA 285 (460)
Q Consensus 208 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~li~~~~~~~~~~~a~~ 285 (460)
.+.|++++|..+|+++.+.+.. +..++..++.+|.+.|++++|..+++.+.. . .+..+++.++..|.+.|++++|.+
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHH
Confidence 6666666666666666654432 445556666666666666666666665543 2 244556666666666666666666
Q ss_pred HHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCC
Q 012577 286 VFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNK 365 (460)
Q Consensus 286 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 365 (460)
+|+++.+..+. +..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+..+
T Consensus 395 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 472 (597)
T 2xpi_A 395 YFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472 (597)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 66666554322 45566666666666666666666666665542 34556666666666666666666666666655432
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCcc--HHHHHHHHHHHHhcCC--chhhhHHHHHhCCCCcC
Q 012577 366 FKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQV----GYVAR--FKQFQTLVQAYINAKT--PAYGIRDRMRADNVFPN 437 (460)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~--~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~ 437 (460)
.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|+ .+..+++.+.+.+ +.+
T Consensus 473 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 549 (597)
T 2xpi_A 473 --YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TND 549 (597)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCC
T ss_pred --CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCC
Confidence 24455666666666666666666666666554 44454 4566666666666666 4555555554433 224
Q ss_pred HHHHHHH
Q 012577 438 KALAAQV 444 (460)
Q Consensus 438 ~~~~~~l 444 (460)
..++..+
T Consensus 550 ~~~~~~l 556 (597)
T 2xpi_A 550 ANVHTAI 556 (597)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 4455444
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=294.95 Aligned_cols=420 Identities=10% Similarity=0.011 Sum_probs=356.8
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccC
Q 012577 10 STLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPES 89 (460)
Q Consensus 10 ~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (460)
..++++.. ..|+...+..++..+.+.|++++|+.+|+.+... +++..+++.++.+|.+.|++++|.++|+++...
T Consensus 105 ~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 179 (597)
T 2xpi_A 105 FVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPF 179 (597)
T ss_dssp HHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTT
T ss_pred HHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCc
Confidence 34444443 3457788889999999999999999999987543 567889999999999999999999999964332
Q ss_pred -----------------CCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHH------------------
Q 012577 90 -----------------FRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQL------------------ 134 (460)
Q Consensus 90 -----------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l------------------ 134 (460)
..+..+|+.++.+|.+.|++++|.++|++|.+.+.. +...+..+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l 258 (597)
T 2xpi_A 180 RKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKL 258 (597)
T ss_dssp C----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHS
T ss_pred cccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhc
Confidence 125789999999999999999999999999987522 33333332
Q ss_pred --------------------HHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCC
Q 012577 135 --------------------LILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGI 193 (460)
Q Consensus 135 --------------------l~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 193 (460)
+..|.+.|+ ++|.++|+.+.+. +++..+|+.++.+|.+.|++++|.++|+++.+.+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 335 (597)
T 2xpi_A 259 NYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID- 335 (597)
T ss_dssp CTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred CCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-
Confidence 334445566 8889999888765 5899999999999999999999999999999776
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHH
Q 012577 194 EPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAI 271 (460)
Q Consensus 194 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li 271 (460)
+.+..+++.++.++.+.|++++|..+++++.+.. +.+..++..++.+|.+.|++++|.++|+.+.. .| +..+|+.++
T Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 414 (597)
T 2xpi_A 336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFA 414 (597)
T ss_dssp TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5578899999999999999999999999998654 34788999999999999999999999998865 44 677999999
Q ss_pred HHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChh
Q 012577 272 EAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVE 351 (460)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 351 (460)
.+|.+.|++++|.++|+++.+.++ .+..+|..++.+|.+.|++++|.++|+.+.+.. +.+..+|..++..|.+.|+++
T Consensus 415 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 492 (597)
T 2xpi_A 415 HSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQ 492 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHH
Confidence 999999999999999999998754 378999999999999999999999999999874 568999999999999999999
Q ss_pred hHHHHHHHHHHhC---CCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhh
Q 012577 352 KADSILLKAQQQN---KFKPM--FSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYG 424 (460)
Q Consensus 352 ~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~ 424 (460)
+|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+.|+ .+..
T Consensus 493 ~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAIT 571 (597)
T ss_dssp HHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999997753 45677 7899999999999999999999999999987 6789999999999999999 5777
Q ss_pred hHHHHHhCCCCcCH-HHHHHH
Q 012577 425 IRDRMRADNVFPNK-ALAAQV 444 (460)
Q Consensus 425 ~~~~m~~~~~~p~~-~~~~~l 444 (460)
.++++.+ +.|+. ..+..|
T Consensus 572 ~~~~~l~--~~p~~~~~~~~l 590 (597)
T 2xpi_A 572 HLHESLA--ISPNEIMASDLL 590 (597)
T ss_dssp HHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHh--cCCCChHHHHHH
Confidence 7777766 45654 344444
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-29 Score=230.54 Aligned_cols=380 Identities=9% Similarity=-0.022 Sum_probs=327.5
Q ss_pred HHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHHHHcCCC
Q 012577 30 AMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLANCVAGNN 108 (460)
Q Consensus 30 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~ 108 (460)
+...+.+.|++++|++.++.+.... |.+...+..+...+...|++++|...++......| +..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 3456778999999999999888765 55566777888889999999999999998766544 67889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHH
Q 012577 109 VKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEA 187 (460)
Q Consensus 109 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 187 (460)
+++|...|+++.+.. +.+..++..+..++...|+ ++|...|+.+.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998864 3356678999999999999 99999999998874 44556788888999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHH
Q 012577 188 MKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLD 265 (460)
Q Consensus 188 m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~ 265 (460)
+.+.. +.+..+|..+...+...|++++|...|+++.+.++. +...+..+...+...|++++|...+++... .| +..
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 238 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHH
Confidence 98764 456889999999999999999999999999986543 567888999999999999999999987655 55 567
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHV 345 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (460)
++..+...+.+.|++++|.+.|+++.+.++. +..+|..+...+.+.|++++|...++.+.+.. +.+..++..+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 8899999999999999999999999986543 67889999999999999999999999999873 678899999999999
Q ss_pred cCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 012577 346 EGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
+.|++++|.+.++++.+.. +.+..++..+..++.+.|++++|.+.|+++.+.. +.+...|..+...+...|+
T Consensus 317 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 9999999999999997643 3456789999999999999999999999999865 5567788888887776653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-33 Score=259.01 Aligned_cols=214 Identities=12% Similarity=0.112 Sum_probs=172.1
Q ss_pred HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhc
Q 012577 181 MDQVVEAMKSEGIEPDS-STQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCE 259 (460)
Q Consensus 181 a~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 259 (460)
+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+....+
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------- 80 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------- 80 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence 44455556655554443 346777777777777777777777777777777777777777777766553321
Q ss_pred cCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 012577 260 SNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDA 339 (460)
Q Consensus 260 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (460)
.+.+.++.|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|++
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 22345788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 012577 340 LVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINA 418 (460)
Q Consensus 340 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 418 (460)
+|.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|++.|+.++|.+++++|++.|..|+..||+.++..|...
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~-~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVE-SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999965 4799999999999999999999999999999999999999999999999998864
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-32 Score=252.11 Aligned_cols=199 Identities=14% Similarity=0.106 Sum_probs=138.3
Q ss_pred HHHHHHHHcCCCCCH-HHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC---------hHHHH
Q 012577 148 DVLLLMEKENVKLTQ-FSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR---------KEKAE 217 (460)
Q Consensus 148 ~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~---------~~~a~ 217 (460)
.+.+.+.+.+..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..|||+||.+|++.+. .++|.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~ 90 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF 90 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence 344444444443332 24556666666666666666666666666666666666666666665443 45666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc
Q 012577 218 AMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES---NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTW 294 (460)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 294 (460)
++|++|...|+.||..||+++|.+|++.|++++|.++|++|.. .|+..+|+++|.+|++.|++++|.++|++|.+.|
T Consensus 91 ~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 6666666666666666666666666666666666666666654 4677777777888888888888888888888889
Q ss_pred cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 012577 295 KKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVE 346 (460)
Q Consensus 295 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 346 (460)
+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 171 ~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 171 VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999998899999999988888875
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-27 Score=214.74 Aligned_cols=368 Identities=13% Similarity=0.048 Sum_probs=316.8
Q ss_pred HHHHHHHhhCHHHHHHHHHhcccCCCc-hhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-
Q 012577 66 CLDLIAKLRGLQKAESYIQKIPESFRG-EVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK- 143 (460)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~- 143 (460)
+...+.+.|++++|.+.++.+....|+ ...+..+...+.+.|++++|...++...+.. +.+..+|..+..++.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 456778899999999999998766564 5667777888999999999999999988764 5678899999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEM 223 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 223 (460)
++|...|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999998864 4456789999999999999999999999998774 445677888999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHH
Q 012577 224 EGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKH 301 (460)
Q Consensus 224 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 301 (460)
.+..+ .+..+|..+...+...|++++|...|+++.. .| +...+..+...+...|++++|...|++..+..+. +..+
T Consensus 162 l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 239 (388)
T 1w3b_A 162 IETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVV 239 (388)
T ss_dssp HHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHH
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHH
Confidence 88643 3578899999999999999999999998766 45 5668899999999999999999999999886543 6788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012577 302 YTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYA 381 (460)
Q Consensus 302 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (460)
+..+...|...|++++|...++.+.+.+ +.+..++..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+.
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHH
Confidence 9999999999999999999999999864 4568899999999999999999999999998865 356788999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHHhCCCCcCH-HHHHHH
Q 012577 382 KRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMRADNVFPNK-ALAAQV 444 (460)
Q Consensus 382 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~-~~~~~l 444 (460)
+.|++++|.+.++++.+.. +.+..++..+...|.+.|+ .+...++.+.+ +.|+. ..+..+
T Consensus 317 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~l 379 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 379 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhH
Confidence 9999999999999999874 6678899999999999999 56677777665 55653 334333
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-24 Score=204.65 Aligned_cols=406 Identities=8% Similarity=-0.054 Sum_probs=315.4
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHH
Q 012577 24 RAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLAN 102 (460)
Q Consensus 24 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~ 102 (460)
...+......+.+.|++++|+..|+.+.... |+...+..+..++.+.|++++|...|+++....| +..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 3456777788899999999999999998875 5788999999999999999999999999876655 56789999999
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHH-----------------------------
Q 012577 103 CVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLL----------------------------- 152 (460)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~----------------------------- 152 (460)
+.+.|++++|...|+++.+.+ +++......++..+..... ..+.+.+..
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999999886 3444454444443333221 111111111
Q ss_pred ------HHHcCCC--------C-CHHHHHHHHHHHhh---cCChhHHHHHHHHHHh-----CCC--------CCCHHHHH
Q 012577 153 ------MEKENVK--------L-TQFSYKILIDIKGQ---SNDLTGMDQVVEAMKS-----EGI--------EPDSSTQA 201 (460)
Q Consensus 153 ------~~~~~~~--------~-~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~g~--------~~~~~~~~ 201 (460)
+...... | +...+......+.. .|++++|..+|+++.+ ..- +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1110000 1 13344444444443 8999999999999887 311 22356788
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCC
Q 012577 202 ILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNK 279 (460)
Q Consensus 202 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~ 279 (460)
.+...+...|++++|...|+++.+.... ..++..+..++...|++++|...++.... .| +...+..+...+...|+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence 8889999999999999999999886544 78888999999999999999999998765 33 66688899999999999
Q ss_pred HHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHH
Q 012577 280 VEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLK 359 (460)
Q Consensus 280 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 359 (460)
+++|...++.+.+..+. +...+..+...+...|++++|...++.+.+.. +.+..++..+...+.+.|++++|...+++
T Consensus 320 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999886554 67788899999999999999999999998863 55678899999999999999999999999
Q ss_pred HHHhCCCCcC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHH
Q 012577 360 AQQQNKFKPM----FSSYMLIMDQYAK---RGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMR 430 (460)
Q Consensus 360 ~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~ 430 (460)
+.+..+-.++ ...+..+..++.. .|++++|...++++.+.. +.+..++..+...|...|+ .+...++...
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8776543333 3478888999999 999999999999999875 6678889999999999999 5666665555
Q ss_pred hCCCCcCHHH
Q 012577 431 ADNVFPNKAL 440 (460)
Q Consensus 431 ~~~~~p~~~~ 440 (460)
+ +.|+...
T Consensus 477 ~--~~~~~~~ 484 (514)
T 2gw1_A 477 D--LARTMEE 484 (514)
T ss_dssp H--HCSSHHH
T ss_pred H--hccccHH
Confidence 5 4565443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-23 Score=195.94 Aligned_cols=370 Identities=12% Similarity=0.016 Sum_probs=230.0
Q ss_pred CCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHH
Q 012577 21 DLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTL 99 (460)
Q Consensus 21 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~l 99 (460)
+.+...+..+...+.+.|++++|+.+|+.+.... |.+...+..+..++...|++++|...|+++....| +..+|..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 3456677777888888899999999998887764 45677888888888889999999999888766544 46778888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCh---hhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 012577 100 LANCVAGNNVKKAEEVFNRMKDKGFPVTS---FACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSN 176 (460)
Q Consensus 100 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 176 (460)
..+|.+.|++++|.+.|+++.+.+ +.+. ..+..+...+.. ..+..+...+...|
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~----------------------~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM----------------------QRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH----------------------HHHHHHHHHHHHcC
Confidence 888888999999999998888764 2233 444444333110 01112233344455
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 012577 177 DLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWK 256 (460)
Q Consensus 177 ~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 256 (460)
++++|.+.|+++.+.. +.+..++..+..+|.+.|++++|+..|+++.+... .+..++..+..+|...|++++|...|+
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555554432 33444555555555555555555555555544321 234455555555555555555555555
Q ss_pred Hhcc-CCC-HHHHHH------------HHHHHHccCCHHHHHHHHHHHHhcccCcC----HHHHHHHHHHHHhcCCHHHH
Q 012577 257 LCES-NPW-LDVCMA------------AIEAWGKLNKVEEAEAVFKRMSKTWKKLS----TKHYTALLKVYADHKMLSKG 318 (460)
Q Consensus 257 ~~~~-~~~-~~~~~~------------li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a 318 (460)
.+.. .|+ ...+.. +...+.+.|++++|...|+.+.+..+. + ...+..+...+.+.|++++|
T Consensus 236 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 236 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHH
Confidence 4433 222 222222 266777777788888887777764322 2 34667777777788888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHH------------HHHHhcC--
Q 012577 319 KDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIM------------DQYAKRG-- 384 (460)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~------------~~~~~~g-- 384 (460)
...++.+.+.. +.+..+|..+..+|...|++++|.+.++++.+..+- +...+..+. ..|...|
T Consensus 315 ~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~ 391 (450)
T 2y4t_A 315 IRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN--DQQIREGLEKAQRLLKQSQKRDYYKILGVK 391 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS--CHHHHHHHHHHHHHHHHHHSCCSGGGSCSS
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc--hHHHHHHHHHHHHHhhcccchhHHHHhCCC
Confidence 88887777653 446777777788888888888888888777654322 233444444 2233444
Q ss_pred ---CHHHHHHHHHHH-HHcC--CCcc-------HHHHHHHHHHHHhcCCc
Q 012577 385 ---DIHSTEKIFHRM-RQVG--YVAR-------FKQFQTLVQAYINAKTP 421 (460)
Q Consensus 385 ---~~~~a~~~~~~m-~~~~--~~~~-------~~~~~~l~~~~~~~g~~ 421 (460)
+.+++.+.++++ .+.. ..|+ ...+..+..+|...++.
T Consensus 392 ~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~ 441 (450)
T 2y4t_A 392 RNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441 (450)
T ss_dssp TTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGG
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCH
Confidence 667788888763 3321 0111 23788888888888873
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-23 Score=193.22 Aligned_cols=311 Identities=9% Similarity=-0.001 Sum_probs=242.2
Q ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012577 92 GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILID 170 (460)
Q Consensus 92 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~ 170 (460)
+...|..+...+.+.|++++|..+|+++.+.. +.+..++..+..++...|+ ++|...|+.+.+.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 44556666666666666666666666666542 3345566666666666666 66666666666553 445677788888
Q ss_pred HHhhcCChhHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHhCCChHHHHHHHHHHHhCCCCCCHHHH
Q 012577 171 IKGQSNDLTGMDQVVEAMKSEGIEPDS---STQAIL------------AKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTC 235 (460)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 235 (460)
+|.+.|++++|.+.|+++.+.. +.+. .++..+ ...+...|++++|+..|+++.+... .+..++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 180 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELR 180 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHH
Confidence 8888888888888888888763 2233 455554 4458899999999999999987643 477889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcc--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHH--------
Q 012577 236 RLLLPLYAELGKADQVARIWKLCES--NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTAL-------- 305 (460)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-------- 305 (460)
..+..+|...|++++|...|+.+.. ..+..++..+...|...|++++|...|+++.+..+. +...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHH
Confidence 9999999999999999999998765 456789999999999999999999999999875433 44455544
Q ss_pred ----HHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHH
Q 012577 306 ----LKVYADHKMLSKGKDLVKQMAESGCHIG-----PLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLI 376 (460)
Q Consensus 306 ----i~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 376 (460)
...+...|++++|...++.+.+.. |+ ...+..+...+.+.|++++|...++++.+.. +.+...|..+
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l 335 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME--PDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHH
Confidence 889999999999999999999853 44 4578889999999999999999999998764 2356899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 012577 377 MDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLV 412 (460)
Q Consensus 377 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 412 (460)
..+|...|++++|...++++.+.. +.+...+..+.
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 999999999999999999999864 55667777777
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-22 Score=193.15 Aligned_cols=396 Identities=10% Similarity=0.019 Sum_probs=293.2
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHH
Q 012577 24 RAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLAN 102 (460)
Q Consensus 24 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~ 102 (460)
...+......+.+.|++++|++.|+.+.... |.+...+..+..++.+.|++++|.+.|+++....| +...+..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 4566777888899999999999999998875 56788899999999999999999999999876645 57789999999
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHc------CCCCCHH------------
Q 012577 103 CVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKE------NVKLTQF------------ 163 (460)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~------~~~~~~~------------ 163 (460)
+...|++++|...|+.+ ... |+.. ...+..+...+. ..+...++.+... ...|+..
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~--~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLN--GDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hcC--CCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 99999999999999743 332 2211 111222222222 5566666655432 1112221
Q ss_pred ------------------HHHHHHHHHhh--------cCChhHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhC
Q 012577 164 ------------------SYKILIDIKGQ--------SNDLTGMDQVVEAMKSEGIEPD-------SSTQAILAKHYVSG 210 (460)
Q Consensus 164 ------------------~~~~li~~~~~--------~~~~~~a~~~~~~m~~~g~~~~-------~~~~~~l~~~~~~~ 210 (460)
....+...+.. .|++++|..+|+++.+.. +.+ ..++..+...+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhc
Confidence 22222222222 247889999999988763 223 23566777888889
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHH
Q 012577 211 GRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFK 288 (460)
Q Consensus 211 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~ 288 (460)
|++++|...|+++.+.. |+..++..+...+...|++++|...++.... .| +..++..+...+...|++++|...|+
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999998764 4477888888999999999999999987765 34 56688889999999999999999999
Q ss_pred HHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCc
Q 012577 289 RMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKP 368 (460)
Q Consensus 289 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 368 (460)
++.+..+. +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+..+-.+
T Consensus 335 ~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 335 KAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 98886543 56788889999999999999999999998874 55678888899999999999999999998876542222
Q ss_pred C----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHHhC
Q 012577 369 M----FSSYMLIMDQYAKR----------GDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMRAD 432 (460)
Q Consensus 369 ~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~ 432 (460)
+ ...+.....++.+. |++++|...|+++.+.. +.+...|..+...|...|+ .+...++...+.
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 2 12234445667777 99999999999999875 6678889999999999998 566666665553
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-21 Score=187.79 Aligned_cols=393 Identities=10% Similarity=-0.015 Sum_probs=299.4
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcc
Q 012577 8 IHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIP 87 (460)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 87 (460)
....+.+..+.. |++..+..+...+.+.|++++|++.|+.+.... |.+...+..+..++...|++++|...|+++.
T Consensus 25 A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 100 (514)
T 2gw1_A 25 AIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLS 100 (514)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334555555554 588999999999999999999999999998875 5567889999999999999999999999986
Q ss_pred cCCC-chhHHHHHHHHHHcCCCHHHHHHHHHHHH-----------------------------------hCCC-------
Q 012577 88 ESFR-GEVVYRTLLANCVAGNNVKKAEEVFNRMK-----------------------------------DKGF------- 124 (460)
Q Consensus 88 ~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-----------------------------------~~g~------- 124 (460)
...| +......++..+........+.+.+..+. ....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (514)
T 2gw1_A 101 LNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANY 180 (514)
T ss_dssp HSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSC
T ss_pred hcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHh
Confidence 6544 33333333333332222222222221110 0000
Q ss_pred --CCChhhhHHHHHHHHh---cCc-hHHHHHHHHHHH-----cCC--------CCCHHHHHHHHHHHhhcCChhHHHHHH
Q 012577 125 --PVTSFACNQLLILYKR---LDK-KKVADVLLLMEK-----ENV--------KLTQFSYKILIDIKGQSNDLTGMDQVV 185 (460)
Q Consensus 125 --~~~~~~~~~ll~~~~~---~~~-~~a~~~~~~~~~-----~~~--------~~~~~~~~~li~~~~~~~~~~~a~~~~ 185 (460)
+.+...+......+.. .|+ ++|...++++.. ..- +.+..++..+...+...|++++|.+.|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 260 (514)
T 2gw1_A 181 DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDI 260 (514)
T ss_dssp CSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 1112333333333333 566 999999998887 311 223457888899999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-C
Q 012577 186 EAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-W 263 (460)
Q Consensus 186 ~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~ 263 (460)
+++.+.. |+..++..+..++...|++++|...++++.+.... +..++..+...+...|++++|...++.... .| +
T Consensus 261 ~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 337 (514)
T 2gw1_A 261 KKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN 337 (514)
T ss_dssp HHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC
T ss_pred HHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh
Confidence 9998875 44888999999999999999999999999887543 567888999999999999999999998765 33 5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHH
Q 012577 264 LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCH-IG----PLAWD 338 (460)
Q Consensus 264 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~ 338 (460)
...+..+...+...|++++|...++.+.+.... +..++..+...+...|++++|...++.+.+.... ++ ...+.
T Consensus 338 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 416 (514)
T 2gw1_A 338 IFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLV 416 (514)
T ss_dssp SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence 668899999999999999999999999886443 6788999999999999999999999998774211 11 34888
Q ss_pred HHHHHHHc---CCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 012577 339 ALVKLHVE---GGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTL 411 (460)
Q Consensus 339 ~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 411 (460)
.+...+.. .|++++|.+.++++.+..+ .+...+..+..++.+.|++++|.+.|+++.+.. +-+...+..+
T Consensus 417 ~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~ 489 (514)
T 2gw1_A 417 GKATLLTRNPTVENFIEATNLLEKASKLDP--RSEQAKIGLAQMKLQQEDIDEAITLFEESADLA-RTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHTSCCTTHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSHHHHHHHH
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc-cccHHHHHHH
Confidence 99999999 9999999999999987653 356788899999999999999999999999875 4444444443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-19 Score=164.51 Aligned_cols=314 Identities=8% Similarity=-0.039 Sum_probs=183.3
Q ss_pred hhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHh
Q 012577 62 DYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKR 140 (460)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 140 (460)
.+..+...+...|++++|...|+++....| +...|..+..++...|++++|...|+++.+..
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------- 67 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK----------------- 67 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------------
Confidence 344445555555555555555555443322 34445555555555555555555555554432
Q ss_pred cCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCC---CCHHHHHHH------------HH
Q 012577 141 LDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIE---PDSSTQAIL------------AK 205 (460)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~---~~~~~~~~l------------~~ 205 (460)
+.+...+..+...+...|++++|.+.|+++.+.. + .+...+..+ ..
T Consensus 68 ------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~ 128 (359)
T 3ieg_A 68 ------------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQAL 128 (359)
T ss_dssp ------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHH
Confidence 2233445555555555555555555555555432 1 122223222 35
Q ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-C-CCHHHHHHHHHHHHccCCHHHH
Q 012577 206 HYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-N-PWLDVCMAAIEAWGKLNKVEEA 283 (460)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~li~~~~~~~~~~~a 283 (460)
.+...|++++|...++++.+... .+...+..+..++...|++++|...++.... . .+...+..+...+...|++++|
T Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 129 DAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 55566666666666666655432 2445555666666666666666666665543 2 2444566666666666666666
Q ss_pred HHHHHHHHhcccCcCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcC
Q 012577 284 EAVFKRMSKTWKKLSTKHYT------------ALLKVYADHKMLSKGKDLVKQMAESGCHIGP----LAWDALVKLHVEG 347 (460)
Q Consensus 284 ~~~~~~m~~~~~~p~~~~~~------------~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~ 347 (460)
...|+...+..+. +...+. .+...+.+.|++++|...++.+.+.. +.+. ..+..+...+.+.
T Consensus 208 ~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 208 LSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHc
Confidence 6666666654322 222222 23556777888888888888887753 2233 2344566778888
Q ss_pred CChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 012577 348 GEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYIN 417 (460)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 417 (460)
|++++|.+.++++.+..+ .+...+..+..++.+.|++++|.+.|+++.+.. +.+...+..+..+...
T Consensus 286 ~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQMEP--DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp TCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 888888888888876542 355677888888888888888888888888764 4456666666665543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-19 Score=174.63 Aligned_cols=378 Identities=13% Similarity=0.033 Sum_probs=287.1
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccC
Q 012577 10 STLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPES 89 (460)
Q Consensus 10 ~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (460)
..+.+..+. .|.++..+..+...+.+.|++++|++.|+.+.... |.+...+..+..++...|++++|...|+.+...
T Consensus 46 ~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 122 (537)
T 3fp2_A 46 KYYQYAIEL-DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDLSVLSLN 122 (537)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC--
T ss_pred HHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 344554443 34578889999999999999999999999998875 557788999999999999999999999755332
Q ss_pred CCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCC------CCCChhh------------------------------hHH
Q 012577 90 FRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKG------FPVTSFA------------------------------CNQ 133 (460)
Q Consensus 90 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g------~~~~~~~------------------------------~~~ 133 (460)
|+ ..+..+..+...+...+|...++++.... ..|+... ...
T Consensus 123 -~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (537)
T 3fp2_A 123 -GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDA 199 (537)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHH
T ss_pred -CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHH
Confidence 32 22222334445556678888888876531 1122111 112
Q ss_pred HHHHHHhc--------Cc-hHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCH
Q 012577 134 LLILYKRL--------DK-KKVADVLLLMEKENVKLT-------QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDS 197 (460)
Q Consensus 134 ll~~~~~~--------~~-~~a~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 197 (460)
+...+... ++ ++|..+++.+.+.. +.+ ..++..+...+...|++++|.+.|+++.+. .|+.
T Consensus 200 l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~ 276 (537)
T 3fp2_A 200 LQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTP 276 (537)
T ss_dssp HHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCc
Confidence 22222211 23 67788888887653 223 235677778889999999999999999987 4668
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHH
Q 012577 198 STQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWG 275 (460)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~ 275 (460)
.++..+...+...|++++|...++++.+... .+..++..+...+...|++++|...++.... .| +...+..+...+.
T Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 355 (537)
T 3fp2_A 277 NSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999988654 3678899999999999999999999998765 44 5678899999999
Q ss_pred ccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHcC---
Q 012577 276 KLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESG-----CHIGPLAWDALVKLHVEG--- 347 (460)
Q Consensus 276 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~--- 347 (460)
..|++++|...++++.+..+. +...+..+...+...|++++|...++.+.+.. .......+......+...
T Consensus 356 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 434 (537)
T 3fp2_A 356 KQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ 434 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999987543 67789999999999999999999999987642 111223344556677777
Q ss_pred -------CChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 348 -------GEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 348 -------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
|++++|...|+++.+..+ .+...+..+..+|.+.|++++|.+.|++..+..
T Consensus 435 ~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 435 DPTQLDEEKFNAAIKLLTKACELDP--RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cchhhhHhHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999999999988653 355788999999999999999999999999875
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-19 Score=161.54 Aligned_cols=330 Identities=11% Similarity=-0.024 Sum_probs=249.9
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHH
Q 012577 24 RAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLAN 102 (460)
Q Consensus 24 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~ 102 (460)
+..+..+...+...|++++|+..|+.+.... |.+...+..+..++...|++++|...|+++....| +...|..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 4567778888999999999999999998875 55678899999999999999999999999876645 56889999999
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCC--CChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhH
Q 012577 103 CVAGNNVKKAEEVFNRMKDKGFP--VTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTG 180 (460)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 180 (460)
+...|++++|...|++..+.... .+...+..+..... ...+..+...+...|++++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE----------------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH----------------------HHHHHHHHHHHHHccCHHH
Confidence 99999999999999999886420 12333322221100 1123345667777888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc
Q 012577 181 MDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES 260 (460)
Q Consensus 181 a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (460)
|.++++++.+.. +.+...+..+...+...|++++|...++++.+... .+..++..+...+...|++++|...++....
T Consensus 139 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 139 AITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888888877654 45677777888888888888888888888877643 3567777888888888888888888876654
Q ss_pred -CCC-HHHHH------------HHHHHHHccCCHHHHHHHHHHHHhcccCcCH----HHHHHHHHHHHhcCCHHHHHHHH
Q 012577 261 -NPW-LDVCM------------AAIEAWGKLNKVEEAEAVFKRMSKTWKKLST----KHYTALLKVYADHKMLSKGKDLV 322 (460)
Q Consensus 261 -~~~-~~~~~------------~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~ 322 (460)
.|+ ...+. .+...+.+.|++++|...++.+.+..+. +. ..+..+...+...|++++|...+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 217 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 332 22222 3366788999999999999998886443 33 23556788999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 012577 323 KQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKR 383 (460)
Q Consensus 323 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (460)
+...+.. +.+..++..+...+...|++++|.+.|+++.+..+ -+...+..+..+....
T Consensus 296 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 296 SEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE--NDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHH
Confidence 9998873 55788999999999999999999999999987543 2345566666655443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-19 Score=159.95 Aligned_cols=288 Identities=11% Similarity=-0.039 Sum_probs=179.5
Q ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012577 92 GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDI 171 (460)
Q Consensus 92 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 171 (460)
+...+..+...+...|++++|.++|+++.+.. +.+...+..++..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----------------------------------p~~~~~~~~~~~~ 65 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-----------------------------------PFHASCLPVHIGT 65 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------TTCTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------------------------CCChhhHHHHHHH
Confidence 44455556666666666666666666665542 2223334444455
Q ss_pred HhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 012577 172 KGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGG-RKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQ 250 (460)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 250 (460)
+...|++++|..+++++.+.. +.+...|..+...+...| ++++|...|+++.+.... +...+..+..++...|++++
T Consensus 66 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~ 143 (330)
T 3hym_B 66 LVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQ 143 (330)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHH
Confidence 555555555555555555442 334455555555555555 555566665555544322 33455555556666666666
Q ss_pred HHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 251 VARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAES 328 (460)
Q Consensus 251 a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 328 (460)
|...++.... .| +...+..+...|...|++++|...++++.+..+. +...+..+...+...|++++|...++.+.+.
T Consensus 144 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 144 AMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp HHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 6666555443 22 3345555666677777777777777777665433 5667777777777777887777777777653
Q ss_pred C--------CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 329 G--------CHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 329 ~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
. .+.+..++..+...|.+.|++++|...++++.+..+ .+...+..+..++.+.|++++|.+.++++.+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP--QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc--cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 1 133456777888888888888888888888776543 244677778888888888888888888887764
Q ss_pred CCccHHHHHHHHHHH-HhcCC
Q 012577 401 YVARFKQFQTLVQAY-INAKT 420 (460)
Q Consensus 401 ~~~~~~~~~~l~~~~-~~~g~ 420 (460)
+.+...+..+..++ ...|+
T Consensus 301 -p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 301 -RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp -SCCHHHHHHHHHHHHTTTTC
T ss_pred -CCchHHHHHHHHHHHHHhCc
Confidence 55667777777776 34444
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-17 Score=156.88 Aligned_cols=353 Identities=10% Similarity=-0.015 Sum_probs=287.8
Q ss_pred CCHHHHHHHHHHHHh----cccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHH----hhCHHHHHHHHHhcccCCCch
Q 012577 22 LSRAEIALAMANLRT----RRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAK----LRGLQKAESYIQKIPESFRGE 93 (460)
Q Consensus 22 ~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 93 (460)
-++.....+...+.. .+++++|+..|+...+.+ +...+..+...|.. .+++++|.++|++.... .+.
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~ 111 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-GLP 111 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCH
Confidence 356777777777777 789999999999887764 55677788888888 88999999999997664 466
Q ss_pred hHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHh----cCc-hHHHHHHHHHHHcCCCCCHHH
Q 012577 94 VVYRTLLANCVA----GNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKR----LDK-KKVADVLLLMEKENVKLTQFS 164 (460)
Q Consensus 94 ~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~-~~a~~~~~~~~~~~~~~~~~~ 164 (460)
..+..|...|.. .+++++|...|++..+.| ++..+..+...|.. .++ ++|.+.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 777778888887 789999999999998876 56677777777775 445 88999999888765 5677
Q ss_pred HHHHHHHHhh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHhCCCCCCHHHHH
Q 012577 165 YKILIDIKGQ----SNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVS----GGRKEKAEAMLKEMEGDNLKEHRWTCR 236 (460)
Q Consensus 165 ~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 236 (460)
+..+...|.. .+++++|.+.|++..+.| +..++..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 8888888887 899999999999988764 56778888888876 789999999999988765 446677
Q ss_pred HHHHHHHh----cCChhHHHHHHHHhccCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHhcccCcCHHHHHHHHH
Q 012577 237 LLLPLYAE----LGKADQVARIWKLCESNPWLDVCMAAIEAWGKL-----NKVEEAEAVFKRMSKTWKKLSTKHYTALLK 307 (460)
Q Consensus 237 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 307 (460)
.+...|.. .+++++|..+|+......+...+..+...|... +++++|...|+...+.+ +...+..+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 336 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGA 336 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHH
Confidence 77778877 889999999999887777778888888888877 89999999999988865 4567777888
Q ss_pred HHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 012577 308 VYADHK---MLSKGKDLVKQMAESGCHIGPLAWDALVKLHVE----GGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQY 380 (460)
Q Consensus 308 ~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (460)
.|...| ++++|...|+...+.| ++..+..+...|.. .+++++|.++|++..+.. +...+..+...|
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~----~~~a~~~Lg~~y 409 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG----LSAAQVQLGEIY 409 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHH
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHHHH
Confidence 887766 7889999999998874 67788888888888 789999999999987642 356777888888
Q ss_pred Hh----cCCHHHHHHHHHHHHHcCC
Q 012577 381 AK----RGDIHSTEKIFHRMRQVGY 401 (460)
Q Consensus 381 ~~----~g~~~~a~~~~~~m~~~~~ 401 (460)
.+ .++.++|...|++..+.+.
T Consensus 410 ~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 410 YYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 87 8999999999999998763
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.5e-19 Score=156.95 Aligned_cols=196 Identities=8% Similarity=-0.095 Sum_probs=102.9
Q ss_pred CChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHH
Q 012577 58 FIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLI 136 (460)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 136 (460)
.+...+..++..+...|++++|.++|+++....| +...+..++.++...|++++|...++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 3444555566666666666666666666544433 33445555556666666666666666665542 223344444444
Q ss_pred HHHhcC-c-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChH
Q 012577 137 LYKRLD-K-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKE 214 (460)
Q Consensus 137 ~~~~~~-~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~ 214 (460)
.+...| + ++|...++...+.. +.+...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 444444 3 44444444444332 2234455555666666666666666666655443 233445555555666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012577 215 KAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKL 257 (460)
Q Consensus 215 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (460)
+|...++++.+... .+..++..+...+...|++++|...++.
T Consensus 177 ~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 218 (330)
T 3hym_B 177 LAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLD 218 (330)
T ss_dssp HHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 66666666555432 2334444455555555555555444443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-19 Score=162.95 Aligned_cols=284 Identities=9% Similarity=-0.055 Sum_probs=131.9
Q ss_pred HhhCHHHHHH-HHHhcccCCC-----chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchH
Q 012577 72 KLRGLQKAES-YIQKIPESFR-----GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKK 145 (460)
Q Consensus 72 ~~~~~~~a~~-~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 145 (460)
-.|++++|.. .|++.....| +...+..+...+.+.|++++|...|+++.+..
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---------------------- 94 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD---------------------- 94 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC----------------------
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------
Confidence 3455555555 5554333211 23345555555556666666666666555542
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 012577 146 VADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEG 225 (460)
Q Consensus 146 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (460)
+.+..++..+..++...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 95 -------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 95 -------------PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp -------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344455556666666666666666666666543 34566666666666666666666666666665
Q ss_pred CCCCCCHHHHHH---------------HHHHHHhcCChhHHHHHHHHhcc-CC---CHHHHHHHHHHHHccCCHHHHHHH
Q 012577 226 DNLKEHRWTCRL---------------LLPLYAELGKADQVARIWKLCES-NP---WLDVCMAAIEAWGKLNKVEEAEAV 286 (460)
Q Consensus 226 ~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~-~~---~~~~~~~li~~~~~~~~~~~a~~~ 286 (460)
..... ...+.. .+..+...|++++|...++.+.. .| +..++..+...+.+.|++++|...
T Consensus 161 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 239 (368)
T 1fch_A 161 YTPAY-AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 239 (368)
T ss_dssp TSTTT-GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCcCc-HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 43221 111110 11111244444444444444332 22 233444444444444555555555
Q ss_pred HHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCC
Q 012577 287 FKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKF 366 (460)
Q Consensus 287 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 366 (460)
|+++.+..+. +..++..+...+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...|+++.+..+-
T Consensus 240 ~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 240 FTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 5444443221 33444444455555555555555555544432 233444444555555555555555555444432211
Q ss_pred C---------cCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012577 367 K---------PMFSSYMLIMDQYAKRGDIHSTEKIFH 394 (460)
Q Consensus 367 ~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~ 394 (460)
. ....+|..+..++.+.|++++|..+++
T Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 318 SRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp C------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 0 002344444555555555555544443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-16 Score=147.49 Aligned_cols=363 Identities=11% Similarity=0.041 Sum_probs=301.0
Q ss_pred hHHHHHHHHHhcccCCCChhhhHHHHHHHHH----hhCHHHHHHHHHhcccCCCchhHHHHHHHHHHc----CCCHHHHH
Q 012577 42 KALQLSEWLETNKKLDFIERDYASCLDLIAK----LRGLQKAESYIQKIPESFRGEVVYRTLLANCVA----GNNVKKAE 113 (460)
Q Consensus 42 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~ 113 (460)
.+++.+......+ +...+..+...|.. .+++++|...|++..+. .+...+..|...|.. .+++++|.
T Consensus 25 ~~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 25 VNLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CCHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 3455666555544 66778888888887 89999999999997764 567788888888988 89999999
Q ss_pred HHHHHHHhCCCCCChhhhHHHHHHHHh----cCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCChhHHHHH
Q 012577 114 EVFNRMKDKGFPVTSFACNQLLILYKR----LDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQ----SNDLTGMDQV 184 (460)
Q Consensus 114 ~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~ 184 (460)
+.|++..+.| ++..+..+-..|.. .++ ++|...|+.....| +...+..|...|.. .+++++|.+.
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999999876 66777777777776 455 99999999998876 56677778888877 8899999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHH
Q 012577 185 VEAMKSEGIEPDSSTQAILAKHYVS----GGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE----LGKADQVARIWK 256 (460)
Q Consensus 185 ~~~m~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 256 (460)
|++..+.| +..++..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|..+|+
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99999864 67888899999988 899999999999998875 45678888888886 889999999999
Q ss_pred HhccCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHH
Q 012577 257 LCESNPWLDVCMAAIEAWGK----LNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADH-----KMLSKGKDLVKQMAE 327 (460)
Q Consensus 257 ~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~ 327 (460)
......+...+..+...|.. .++.++|...|+...+.| +...+..+...|... +++++|...++...+
T Consensus 248 ~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 248 QSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 98887888888888888887 899999999999998764 566778888888887 899999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHcCC---ChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 012577 328 SGCHIGPLAWDALVKLHVEGG---EVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAK----RGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 328 ~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 400 (460)
.| +...+..+...|...| ++++|.++|++..+. .+...+..+...|.. .+++++|.+.|++..+.|
T Consensus 325 ~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 325 QG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp TT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 75 5677888888888766 789999999998765 245688888888988 899999999999999976
Q ss_pred CCccHHHHHHHHHHHHh----cCC--chhhhHHHHHhCCC
Q 012577 401 YVARFKQFQTLVQAYIN----AKT--PAYGIRDRMRADNV 434 (460)
Q Consensus 401 ~~~~~~~~~~l~~~~~~----~g~--~~~~~~~~m~~~~~ 434 (460)
+...+..|...|.. .++ .+...++.-.+.+.
T Consensus 398 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 398 ---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 46788888888887 566 56666766666553
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-16 Score=152.29 Aligned_cols=404 Identities=11% Similarity=0.059 Sum_probs=294.1
Q ss_pred CCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHH
Q 012577 20 NDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTL 99 (460)
Q Consensus 20 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l 99 (460)
.|-+...+..++. +.+.|++++|..+|+.+.... |.+...+...+..+.+.|+++.|..+|++.....|+...|..+
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~ 85 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCY 85 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHH
Confidence 3457778888887 477899999999999998874 6678889999999999999999999999998888888888887
Q ss_pred HHHH-HcCCCHHHHHH----HHHHHHh-CCCCC-ChhhhHHHHHHHHh---------cCc-hHHHHHHHHHHHcCCCCCH
Q 012577 100 LANC-VAGNNVKKAEE----VFNRMKD-KGFPV-TSFACNQLLILYKR---------LDK-KKVADVLLLMEKENVKLTQ 162 (460)
Q Consensus 100 l~~~-~~~~~~~~a~~----~~~~m~~-~g~~~-~~~~~~~ll~~~~~---------~~~-~~a~~~~~~~~~~~~~~~~ 162 (460)
+... ...|+.++|.+ +|++... .|..| +...|...+....+ .|+ +.|..+|++..+....+..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 7533 45677776655 7777654 35443 45667777765544 455 8899999998873211112
Q ss_pred HHHHHHHHHH-------------hhcCChhHHHHHHHHHH------hCC---CCCC--------HHHHHHHHHHHHhC--
Q 012577 163 FSYKILIDIK-------------GQSNDLTGMDQVVEAMK------SEG---IEPD--------SSTQAILAKHYVSG-- 210 (460)
Q Consensus 163 ~~~~~li~~~-------------~~~~~~~~a~~~~~~m~------~~g---~~~~--------~~~~~~l~~~~~~~-- 210 (460)
..|....... .+.++++.|..++.++. +.. ++|+ ...|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 3443322211 13456777887777632 221 3444 24566555433322
Q ss_pred --CCh----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCChh-------HHHHHHHHhcc--CC-CHHHH
Q 012577 211 --GRK----EKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE-------LGKAD-------QVARIWKLCES--NP-WLDVC 267 (460)
Q Consensus 211 --~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~--~~-~~~~~ 267 (460)
++. ..+..+|+++....+ -+...|...+..+.. .|+++ +|..++++... .| +...|
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 232 477889998887633 367788888888775 79987 89999998764 45 56789
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcccCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 012577 268 MAAIEAWGKLNKVEEAEAVFKRMSKTWKKLST-KHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKL-HV 345 (460)
Q Consensus 268 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~ 345 (460)
..++..+.+.|++++|..+|+.+.+..+. +. ..|..++..+.+.|++++|..+|+...+.. +.+...|...... +.
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHH
Confidence 99999999999999999999999985322 33 589999999999999999999999998863 3334444433333 34
Q ss_pred cCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCcc--HHHHHHHHHHHHhcCC--
Q 012577 346 EGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG-YVAR--FKQFQTLVQAYINAKT-- 420 (460)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~~--~~~~~~l~~~~~~~g~-- 420 (460)
..|+.++|..+|+...+..+ .+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+
T Consensus 403 ~~~~~~~A~~~~e~al~~~p--~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~ 480 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 480 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred HcCChhHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 68999999999999988754 346788999999999999999999999999864 2332 4488888988888998
Q ss_pred chhhhHHHHHh
Q 012577 421 PAYGIRDRMRA 431 (460)
Q Consensus 421 ~~~~~~~~m~~ 431 (460)
.+..+..++.+
T Consensus 481 ~~~~~~~r~~~ 491 (530)
T 2ooe_A 481 SILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45556655544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-18 Score=157.49 Aligned_cols=304 Identities=10% Similarity=-0.065 Sum_probs=192.1
Q ss_pred HHhcccchhHHH-HHHHHHhcccCCC--ChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHHHHcCCCH
Q 012577 34 LRTRRMYGKALQ-LSEWLETNKKLDF--IERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLANCVAGNNV 109 (460)
Q Consensus 34 ~~~~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~ 109 (460)
+.-.|++++|++ .|+......+..| +...+..+...+...|++++|...|+++....| +..+|..+..++.+.|++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 345578889988 8876554432222 345678899999999999999999999877644 577899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 012577 110 KKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAM 188 (460)
Q Consensus 110 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 188 (460)
++|...|+++.+.+ +.+..++..+...+...|+ ++|...++.+.... +.+...+..+... .
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~--------- 176 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------A--------- 176 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------h---------
Confidence 99999999998764 3355556666666666666 66666666665543 2222222111000 0
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHH
Q 012577 189 KSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKE-HRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLD 265 (460)
Q Consensus 189 ~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~ 265 (460)
.. ..+ ...+..+ ..+...|++++|...|+++.+..... +..++..+...|...|++++|...++.... .| +..
T Consensus 177 -~~-~~~-~~~~~~~-~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 252 (368)
T 1fch_A 177 -GG-AGL-GPSKRIL-GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL 252 (368)
T ss_dssp ------------CTT-HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred -hh-hcc-cHHHHHH-HHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH
Confidence 00 000 0011112 22236666777777777666543321 356666667777777777777777766544 33 455
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------CCHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCH----------IGPL 335 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~~ 335 (460)
.+..+...+...|++++|...|+++.+..+ .+..++..+...|.+.|++++|...++.+.+.... ....
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 331 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence 677777777888888888888887776543 25677888888888888888888888887764211 1267
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHH
Q 012577 336 AWDALVKLHVEGGEVEKADSILLKA 360 (460)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~ 360 (460)
+|..+..+|...|++++|..++.+.
T Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 332 IWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHHhCChHhHHHhHHHH
Confidence 8888888888999999888877643
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.7e-18 Score=154.34 Aligned_cols=211 Identities=10% Similarity=0.036 Sum_probs=96.2
Q ss_pred CHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012577 161 TQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLP 240 (460)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 240 (460)
+..+|..+...+...|++++|.+.|+++.+.. +.+..+|..+..+|...|++++|+..|+++.+.... +...+..+
T Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~-- 173 (365)
T 4eqf_A 98 DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK-YKYLVKNK-- 173 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHCC------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCcc-chHHHhhh--
Confidence 44455555555666666666666666555443 334555556666666666666666666555542210 00000000
Q ss_pred HHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccC-cCHHHHHHHHHHHHhcCCHHHHH
Q 012577 241 LYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKK-LSTKHYTALLKVYADHKMLSKGK 319 (460)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~ 319 (460)
......+..+...+...|++++|...|+++.+..+. ++..++..+...|...|++++|.
T Consensus 174 --------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 233 (365)
T 4eqf_A 174 --------------------KGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAI 233 (365)
T ss_dssp -----------------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred --------------------ccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHH
Confidence 000112223344444555555555555555443221 13444555555555555555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 320 DLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
..++.+.+.. +.+..++..+..+|.+.|++++|...|+++.+..+ .+...+..+..+|.+.|++++|...|+++.+
T Consensus 234 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 234 DAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP--GFIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555554442 33445555555555555555555555555544321 1234445555555555555555555555543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-18 Score=157.87 Aligned_cols=266 Identities=9% Similarity=-0.091 Sum_probs=153.4
Q ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012577 92 GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILID 170 (460)
Q Consensus 92 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~ 170 (460)
+...|..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|+ ++|...|++..+.. +.+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34456777777777777777777777777653 3456677777777777777 77777777777664 456778888899
Q ss_pred HHhhcCChhHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-CCHHHHHHH
Q 012577 171 IKGQSNDLTGMDQVVEAMKSEGIEPD-----------SSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLK-EHRWTCRLL 238 (460)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l 238 (460)
.|...|++++|.+.|+++.+.. |+ ...+..+...+...|++++|+..|+++.+.... ++..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999887642 22 122333456666777777777777776654322 134444445
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHH
Q 012577 239 LPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKG 318 (460)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 318 (460)
...|...|++++|...+ +++.+..+. +..+|..+...|...|++++|
T Consensus 220 ~~~~~~~g~~~~A~~~~--------------------------------~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 266 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAF--------------------------------NAALTVRPE-DYSLWNRLGATLANGDRSEEA 266 (365)
T ss_dssp HHHHHHHTCHHHHHHHH--------------------------------HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHH--------------------------------HHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 55555555544444444 444443221 344555555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCC----------cCHHHHHHHHHHHHhcCCHHH
Q 012577 319 KDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFK----------PMFSSYMLIMDQYAKRGDIHS 388 (460)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~ 388 (460)
...++.+.+.. +.+..++..+...|.+.|++++|...|+++.+..+-. .+...|..+..++...|+.+.
T Consensus 267 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 345 (365)
T 4eqf_A 267 VEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPEL 345 (365)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHH
Confidence 55555555442 2334555555555555555555555555554432110 013456666666666666666
Q ss_pred HHHHHHH
Q 012577 389 TEKIFHR 395 (460)
Q Consensus 389 a~~~~~~ 395 (460)
+.++.++
T Consensus 346 a~~~~~~ 352 (365)
T 4eqf_A 346 FQAANLG 352 (365)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 6555543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=8.1e-19 Score=157.06 Aligned_cols=290 Identities=10% Similarity=0.028 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHH
Q 012577 25 AEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCV 104 (460)
Q Consensus 25 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~ 104 (460)
+.+..++. +.|++++|.++++.+. .+.+|+.++.++.+.|++++|++.|.+. ++...|..++.++.
T Consensus 7 ~a~~~ll~---~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae 72 (449)
T 1b89_A 7 SAVQVLIE---HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAAN 72 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH---HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHH
Confidence 33444443 4567889999998772 2348899999999999999999999764 56678899999999
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHH
Q 012577 105 AGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQ 183 (460)
Q Consensus 105 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 183 (460)
..|++++|...++..++. .+++.+.+.++.+|.+.|+ .++.++++ .|+..+|+.+...|...|++++|..
T Consensus 73 ~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~ 143 (449)
T 1b89_A 73 TSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKL 143 (449)
T ss_dssp --------------------------------------CHHHHTTTTT-------CC----------------CTTTHHH
T ss_pred hCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999977766664 4567888899999999988 66666553 4777899999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCC
Q 012577 184 VVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPW 263 (460)
Q Consensus 184 ~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 263 (460)
+|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+...|+
T Consensus 144 ~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad 208 (449)
T 1b89_A 144 LYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD 208 (449)
T ss_dssp HHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHH
T ss_pred HHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHh
Confidence 99976 37889999999999999999999988 2678999999999999999999766655543443
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCC------CHHH
Q 012577 264 LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAE-SGCHI------GPLA 336 (460)
Q Consensus 264 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~------~~~~ 336 (460)
. ...++..|.+.|++++|..+++...... +-....|+-|.-.|++- ++++.++-++.... -+++| +...
T Consensus 209 ~--l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 209 E--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL 284 (449)
T ss_dssp H--HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTC
T ss_pred h--HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3 4468888999999999999999888765 34667788887777764 34444433333222 22333 4567
Q ss_pred HHHHHHHHHcCCChhhHHHH
Q 012577 337 WDALVKLHVEGGEVEKADSI 356 (460)
Q Consensus 337 ~~~li~~~~~~~~~~~a~~~ 356 (460)
|.-++-.|...++++.|..+
T Consensus 285 w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHH
Confidence 88888888888888888775
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=155.93 Aligned_cols=263 Identities=11% Similarity=0.021 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHH
Q 012577 23 SRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLAN 102 (460)
Q Consensus 23 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~ 102 (460)
.+..+..+..++.+.|++++|++.|... ++...|..++..+...|++++|.++++...+..+++.+.+.++.+
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~ 103 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHH
Confidence 4457777788888888888888887432 355577777888888888888888777766655566777788888
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHH
Q 012577 103 CVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGM 181 (460)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 181 (460)
|.+.|+++++.++++ .|+..+|+.+...|...|. ++|..+|..+ ..|..++.++.+.|++++|
T Consensus 104 Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~A 167 (449)
T 1b89_A 104 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 167 (449)
T ss_dssp -----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHH
T ss_pred HHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHH
Confidence 888888888777764 2566688888888887777 7788877765 3677788888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-
Q 012577 182 DQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES- 260 (460)
Q Consensus 182 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 260 (460)
.+.+.++ .++.+|..++.+|...|+++.|...... +...+.-...++..|.+.|++++|..+++....
T Consensus 168 Vea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 168 VDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp HHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 8888777 2677888888888888888888554433 222333344677778888888888888876554
Q ss_pred -CCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHhcccCc------CHHHHHHHHHHHHhcCCHHHHHHH
Q 012577 261 -NPWLDVCMAAIEAWGKL--NKVEEAEAVFKRMSKTWKKL------STKHYTALLKVYADHKMLSKGKDL 321 (460)
Q Consensus 261 -~~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~p------~~~~~~~li~~~~~~g~~~~a~~~ 321 (460)
+-....|+-+.-.|++- ++..+.++.|..-. +++| +...|.-+...|...++++.|...
T Consensus 237 e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 237 ERAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 22444666666666654 33444444443211 2222 345677777777777888777663
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=8.6e-17 Score=143.96 Aligned_cols=263 Identities=10% Similarity=-0.035 Sum_probs=135.8
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 012577 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKG 173 (460)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 173 (460)
..+..+...+...|++++|..+|+++.+.. +.+...+..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------------------------------~~~~~~~~~l~~~~~ 66 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-----------------------------------PEREEAWRSLGLTQA 66 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----------------------------------CCCHHHHHHHHHHHH
Confidence 344555555666666666666666655432 223444555555555
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHH--------------H
Q 012577 174 QSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLL--------------L 239 (460)
Q Consensus 174 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~ 239 (460)
..|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+.... +...+..+ .
T Consensus 67 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 144 (327)
T 3cv0_A 67 ENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSE 144 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC-------------------
T ss_pred HcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHH
Confidence 5666666666666555443 334555555666666666666666666665544322 11111111 1
Q ss_pred H-HHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHH
Q 012577 240 P-LYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLS 316 (460)
Q Consensus 240 ~-~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 316 (460)
. .+...|++++|...++.... .| +...+..+...+...|++++|...++++.+..+. +..++..+...+...|+++
T Consensus 145 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 145 DFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp -CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHH
Confidence 1 24444555555555554433 22 3444555555555555555555555555544322 4455555556666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCC----------cCHHHHHHHHHHHHhcCCH
Q 012577 317 KGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFK----------PMFSSYMLIMDQYAKRGDI 386 (460)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~ 386 (460)
+|...++.+.+.. +.+..++..+...|.+.|++++|.+.++++.+..+-. .+...|..+..++.+.|++
T Consensus 224 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 224 EALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 6666666655542 3345555555666666666666666665554433110 0234555555566666666
Q ss_pred HHHHHHHHH
Q 012577 387 HSTEKIFHR 395 (460)
Q Consensus 387 ~~a~~~~~~ 395 (460)
++|..++++
T Consensus 303 ~~A~~~~~~ 311 (327)
T 3cv0_A 303 DLVELTYAQ 311 (327)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHH
Confidence 666655543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.9e-17 Score=140.76 Aligned_cols=251 Identities=10% Similarity=0.051 Sum_probs=139.0
Q ss_pred HHHHHhhCHHHHHHHHHhcccCCCch--hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchH
Q 012577 68 DLIAKLRGLQKAESYIQKIPESFRGE--VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKK 145 (460)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 145 (460)
+-....|+++.|+..++.+....|+. .....+.++|...|+++.|+..++. . -
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~--------------------- 61 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-S--------------------- 61 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-S---------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-C---------------------
Confidence 34455677777777776665543432 2344556677777777777764432 1 1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012577 146 VADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEP-DSSTQAILAKHYVSGGRKEKAEAMLKEME 224 (460)
Q Consensus 146 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (460)
+|+..++..+...+...++.++|++.++++...+..| +...+..+...+...|++++|++.+++
T Consensus 62 -------------~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-- 126 (291)
T 3mkr_A 62 -------------APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-- 126 (291)
T ss_dssp -------------CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--
T ss_pred -------------ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--
Confidence 2333444444444555555555555555544443222 233344444445555555555555443
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCCHHH---HHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHH
Q 012577 225 GDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NPWLDV---CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTK 300 (460)
Q Consensus 225 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 300 (460)
+.+...+..++..+.+.|++++|...++.+.. .|+... ....+..+...|++++|..+|+++.+..+ .+..
T Consensus 127 ----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~ 201 (291)
T 3mkr_A 127 ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLL 201 (291)
T ss_dssp ----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHH
T ss_pred ----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHH
Confidence 22334444444455555555555554444433 222211 11222333445677777777777776633 3667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhh-HHHHHHHHHHhC
Q 012577 301 HYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEK-ADSILLKAQQQN 364 (460)
Q Consensus 301 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~ 364 (460)
.++.+..++.+.|++++|...++++.+.. +-+..++..++..+...|+.++ +.++++++.+..
T Consensus 202 ~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 202 LLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 77777777777777777777777777653 4466777777777777777755 456777776654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-19 Score=173.08 Aligned_cols=149 Identities=16% Similarity=0.229 Sum_probs=125.3
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHHHh---CCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHH
Q 012577 93 EVVYRTLLANCVAGNNVKKAEEVFNRMKD---KGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKIL 168 (460)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l 168 (460)
..+||+||++|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|. ++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 46899999999999999999999988764 5899999999999999999999 9999999999999999999999999
Q ss_pred HHHHhhcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC------HHHHHHHHHH
Q 012577 169 IDIKGQSNDL-TGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEH------RWTCRLLLPL 241 (460)
Q Consensus 169 i~~~~~~~~~-~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~ 241 (460)
|+++++.|+. +.|.++|++|.+.|+.||..+|+.++.++.+. .+++..+++ ..+..|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 9999999985 78999999999999999999999998765543 444444444 3344443 4455566777
Q ss_pred HHhcC
Q 012577 242 YAELG 246 (460)
Q Consensus 242 ~~~~~ 246 (460)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 77655
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-14 Score=139.30 Aligned_cols=385 Identities=11% Similarity=0.003 Sum_probs=275.4
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHH-HHhhCHHHHHH----H
Q 012577 8 IHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLI-AKLRGLQKAES----Y 82 (460)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~----~ 82 (460)
...++++..+ ..|.+...+...+....+.|++++|..+|+.+.... |+...+...+... ...|+.+.|.+ +
T Consensus 31 a~~~~e~al~-~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~ 106 (530)
T 2ooe_A 31 ARKTYERLVA-QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWKCYLSYVRETKGKLPSYKEKMAQA 106 (530)
T ss_dssp HHHHHHHHHT-TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHHTTTSTTHHHHHHHH
T ss_pred HHHHHHHHHH-HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHccchhhHHHHHHHH
Confidence 3445555544 456688888999999999999999999999998764 4666666666533 34577766654 6
Q ss_pred HHhccc----CCCchhHHHHHHHHHHc---------CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHH----------
Q 012577 83 IQKIPE----SFRGEVVYRTLLANCVA---------GNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYK---------- 139 (460)
Q Consensus 83 ~~~~~~----~~~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~---------- 139 (460)
|+.... ..++...|...+....+ .|+++.|..+|++.++....+....|........
T Consensus 107 ~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~ 186 (530)
T 2ooe_A 107 YDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKM 186 (530)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHH
Confidence 666432 23456778887776554 6889999999999988311111233333222111
Q ss_pred ---hcCc-hHHHHHHHHHH------HcC---CCCC--------HHHHHHHHHHHhhc----CCh----hHHHHHHHHHHh
Q 012577 140 ---RLDK-KKVADVLLLME------KEN---VKLT--------QFSYKILIDIKGQS----NDL----TGMDQVVEAMKS 190 (460)
Q Consensus 140 ---~~~~-~~a~~~~~~~~------~~~---~~~~--------~~~~~~li~~~~~~----~~~----~~a~~~~~~m~~ 190 (460)
+.+. ..|..++..+. +.. ++|+ ...|...+...... ++. +.+..+|++...
T Consensus 187 l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~ 266 (530)
T 2ooe_A 187 IEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL 266 (530)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHH
Confidence 1112 44555555422 111 3444 24555555433322 233 377889999887
Q ss_pred CCCCCCHHHHHHHHHHHHh-------CCChH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 012577 191 EGIEPDSSTQAILAKHYVS-------GGRKE-------KAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWK 256 (460)
Q Consensus 191 ~g~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 256 (460)
.. +.+...|..++..+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+.|++++|..+|+
T Consensus 267 ~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~ 345 (530)
T 2ooe_A 267 VL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYN 345 (530)
T ss_dssp HH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 63 5578889888888875 79987 999999999863233467889999999999999999999999
Q ss_pred Hhcc-CCC-H-HHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCC
Q 012577 257 LCES-NPW-L-DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKV-YADHKMLSKGKDLVKQMAESGCHI 332 (460)
Q Consensus 257 ~~~~-~~~-~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~ 332 (460)
.... .|+ . ..|...+..+.+.|++++|.++|++..+.... +...|...+.. +...|+.++|..+|+...+.. +.
T Consensus 346 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~ 423 (530)
T 2ooe_A 346 RLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GD 423 (530)
T ss_dssp HHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TT
T ss_pred HHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CC
Confidence 8776 443 2 47888899899999999999999999886332 33334333222 346899999999999998863 55
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 333 GPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM--FSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
+...|..++..+.+.|+.++|..+|+++....+..|+ ...|...+......|+.+.+..+++++.+.
T Consensus 424 ~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 424 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999886555553 457888888889999999999999999875
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.9e-17 Score=144.18 Aligned_cols=153 Identities=12% Similarity=0.035 Sum_probs=82.8
Q ss_pred HhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 012577 172 KGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQV 251 (460)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 251 (460)
+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+... .+..++..+.
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~------------ 213 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLG------------ 213 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH------------
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHH------------
Confidence 555666666666666666543 33556666666666666666666666666655422 1333444444
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 012577 252 ARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCH 331 (460)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 331 (460)
..+...|++++|...++++.+..+. +..++..+...|...|++++|...++.+.+....
T Consensus 214 --------------------~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 214 --------------------ATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp --------------------HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred --------------------HHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 4444444555555555544443221 3445555555555555555555555555543211
Q ss_pred C-----------CHHHHHHHHHHHHcCCChhhHHHHHHH
Q 012577 332 I-----------GPLAWDALVKLHVEGGEVEKADSILLK 359 (460)
Q Consensus 332 ~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~ 359 (460)
. +..++..+..++.+.|++++|..++++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 273 GTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp SCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred cccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 0 245555566666666666666665543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-15 Score=144.43 Aligned_cols=354 Identities=9% Similarity=-0.076 Sum_probs=189.1
Q ss_pred hhhhHHHHHHHHHhhCHHHHHHHHHhcccC---------CC-chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCC------
Q 012577 60 ERDYASCLDLIAKLRGLQKAESYIQKIPES---------FR-GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKG------ 123 (460)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g------ 123 (460)
...|+.+...+...|++++|++.|++..+. .| ...+|+.+..+|...|++++|...+++..+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445666666677777777777766653211 12 24566667777777777777777766654320
Q ss_pred CC-CChhhhHHHHHHHHhcC--c-hHHHHHHHHHHHcCCCCCHHHHHHHHHH---HhhcCChhHHHHHHHHHHhCCCCCC
Q 012577 124 FP-VTSFACNQLLILYKRLD--K-KKVADVLLLMEKENVKLTQFSYKILIDI---KGQSNDLTGMDQVVEAMKSEGIEPD 196 (460)
Q Consensus 124 ~~-~~~~~~~~ll~~~~~~~--~-~~a~~~~~~~~~~~~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g~~~~ 196 (460)
.. ....+++....++...+ + ++|...|++..+.. +-+...+..+..+ +...++.++|++.+++..+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 01 12234444433444333 2 66777777666553 2234444443333 334556666777776666543 334
Q ss_pred HHHHHHHHHHHHh----CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHH
Q 012577 197 SSTQAILAKHYVS----GGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAA 270 (460)
Q Consensus 197 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l 270 (460)
..++..+...+.. .+++++|.+.+++...... .+..++..+...|...|++++|...++.... .| +..++..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 5555555444433 3455667777766665433 2455666677777777777777777766544 34 33344444
Q ss_pred HHHHHc-------------------cCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 012577 271 IEAWGK-------------------LNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCH 331 (460)
Q Consensus 271 i~~~~~-------------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 331 (460)
...|.. .+..+.|...++...+..+. +..++..+...|...|++++|...|++..+....
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 444322 12345666667666655432 4566777778888888888888888887765322
Q ss_pred CCH--HHHHHHHH-HHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 012577 332 IGP--LAWDALVK-LHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQF 408 (460)
Q Consensus 332 ~~~--~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 408 (460)
+.. ..+..+.. .....|+.++|+..|.+..+.. |+...... ....+.+++++..+.+ +.+..+|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~---~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~ 433 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN---QKSREKEK---------MKDKLQKIAKMRLSKN-GADSEAL 433 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC---CCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---cccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHH
Confidence 211 11222222 2345677888888887776533 43222211 1233445555555554 5566677
Q ss_pred HHHHHHHHhcCC--chhhhHHHHH
Q 012577 409 QTLVQAYINAKT--PAYGIRDRMR 430 (460)
Q Consensus 409 ~~l~~~~~~~g~--~~~~~~~~m~ 430 (460)
..|...|...|+ .|...+++-.
T Consensus 434 ~~LG~~~~~~g~~~~A~~~y~kAL 457 (472)
T 4g1t_A 434 HVLAFLQELNEKMQQADEDSERGL 457 (472)
T ss_dssp HHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777776 4555554433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=9.1e-15 Score=146.10 Aligned_cols=377 Identities=11% Similarity=0.061 Sum_probs=195.5
Q ss_pred HHHHHHHHHHh---CCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhccc-CCCChhhhHHHHHHHHHhhCHHHHHHHH
Q 012577 8 IHSTLTKYAEE---GNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKK-LDFIERDYASCLDLIAKLRGLQKAESYI 83 (460)
Q Consensus 8 ~~~~l~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 83 (460)
...-|-+|... ....+|+.+...++.+...|.+.+|+++++.+...+. +.-+....+.++....+. +.....++.
T Consensus 966 ~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI 1044 (1630)
T 1xi4_A 966 YRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYI 1044 (1630)
T ss_pred HHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHH
Confidence 34444555333 3457889999999999999999999999999884431 122334444455444444 444444444
Q ss_pred HhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCH
Q 012577 84 QKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQ 162 (460)
Q Consensus 84 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~ 162 (460)
+++.. .+ ...+...+...|.+++|..+|++... .....+.++. ..++ ++|.++.++. -+.
T Consensus 1045 ~kLd~--~d---~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p 1105 (1630)
T 1xi4_A 1045 NRLDN--YD---APDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEP 1105 (1630)
T ss_pred HHhhh--cc---HHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCH
Confidence 44432 11 22244555556666666666665310 1111122211 2222 4444444422 123
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-------------
Q 012577 163 FSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLK------------- 229 (460)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------- 229 (460)
.+|..+..++...|++++|++.|.+. .|...|..++.++.+.|++++|.++|....+....
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAK 1179 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHh
Confidence 44555555555555555555555332 34445555555555555555555555544443211
Q ss_pred -------------CCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccC
Q 012577 230 -------------EHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKK 296 (460)
Q Consensus 230 -------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 296 (460)
++...|..+...|...|++++|..+|... ..|..+...|++.|++++|.+.+++..
T Consensus 1180 l~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------~ny~rLA~tLvkLge~q~AIEaarKA~----- 1248 (1630)
T 1xi4_A 1180 TNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVHLGEYQAAVDGARKAN----- 1248 (1630)
T ss_pred hcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh------hHHHHHHHHHHHhCCHHHHHHHHHHhC-----
Confidence 12223333444444444444444444432 234444444444444444444444331
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHH
Q 012577 297 LSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLI 376 (460)
Q Consensus 297 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 376 (460)
+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++...... +.....|+-+
T Consensus 1249 -n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le--raH~gmftEL 1320 (1630)
T 1xi4_A 1249 -STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTEL 1320 (1630)
T ss_pred -CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--hhHhHHHHHH
Confidence 334444444444444444444443322 22345566677778888888888888887765443 2233455555
Q ss_pred HHHHHhc--CCHHHHHHHHHHHHHcCCCc------cHHHHHHHHHHHHhcCCchhhhHHHHHh
Q 012577 377 MDQYAKR--GDIHSTEKIFHRMRQVGYVA------RFKQFQTLVQAYINAKTPAYGIRDRMRA 431 (460)
Q Consensus 377 ~~~~~~~--g~~~~a~~~~~~m~~~~~~~------~~~~~~~l~~~~~~~g~~~~~~~~~m~~ 431 (460)
..+|++- ++..++.+.|..- .+++| +...|..++-.|.+.|+...++...|..
T Consensus 1321 aiLyaKy~peklmEhlk~f~~r--ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 5555553 3444444444422 22332 4667888888888888865555544443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-16 Score=138.11 Aligned_cols=225 Identities=14% Similarity=0.139 Sum_probs=164.5
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 012577 164 SYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKE-HRWTCRLLLPLY 242 (460)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 242 (460)
....+.++|...|+++.|+..++.. -+|+..++..+...+...++.++|++.++++...+..| +...+..+..++
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~ 111 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIY 111 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 3445677888888888888766541 25677778888888888888888888888887766444 445566667888
Q ss_pred HhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHH---HHHHHHHHhcCCHHHHH
Q 012577 243 AELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHY---TALLKVYADHKMLSKGK 319 (460)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~li~~~~~~g~~~~a~ 319 (460)
...|++++|...++. ..+...+..++..+.+.|++++|.+.|+.+.+.. |+.... ..++..+...|++++|.
T Consensus 112 ~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~ 186 (291)
T 3mkr_A 112 FYDQNPDAALRTLHQ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAY 186 (291)
T ss_dssp HHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred HHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHH
Confidence 888888888888876 4566677888888888888888888888887754 343211 12233444557888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 012577 320 DLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHS-TEKIFHRMRQ 398 (460)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~ 398 (460)
.+|+++.+. .+.+...++.+..++.+.|++++|.+.|+++.+..+- +..++..++..+...|+.++ +.++++++.+
T Consensus 187 ~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~--~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 187 YIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG--HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 888888876 4667788888888888888888888888888776543 44567777778888888765 5678888877
Q ss_pred cC
Q 012577 399 VG 400 (460)
Q Consensus 399 ~~ 400 (460)
..
T Consensus 264 ~~ 265 (291)
T 3mkr_A 264 AH 265 (291)
T ss_dssp HC
T ss_pred hC
Confidence 64
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-18 Score=168.56 Aligned_cols=152 Identities=11% Similarity=0.096 Sum_probs=127.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHH---hcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 012577 263 WLDVCMAAIEAWGKLNKVEEAEAVFKRMS---KTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDA 339 (460)
Q Consensus 263 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (460)
-..+|+++|++||+.|++++|.++|++|. ..|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34589999999999999999999998876 458999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCh-hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc------HHHHHHHH
Q 012577 340 LVKLHVEGGEV-EKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVAR------FKQFQTLV 412 (460)
Q Consensus 340 li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~------~~~~~~l~ 412 (460)
+|.++++.|+. ++|.++|++|.+. |+.||..+|++++.+..+. .+++..+++ .-++.|+ ..+...|.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 99999999985 7899999999765 7999999999998766554 333444444 3345554 55666677
Q ss_pred HHHHhcCC
Q 012577 413 QAYINAKT 420 (460)
Q Consensus 413 ~~~~~~g~ 420 (460)
+.|.+.+.
T Consensus 280 dl~s~d~~ 287 (1134)
T 3spa_A 280 DVYAKDGR 287 (1134)
T ss_dssp HHHCCCSC
T ss_pred HHHccCCC
Confidence 77777775
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-15 Score=143.31 Aligned_cols=369 Identities=13% Similarity=0.024 Sum_probs=242.9
Q ss_pred CHHHHHHHHHHHHhcccchhHHHHHHHHHhc----cc---CCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccC------
Q 012577 23 SRAEIALAMANLRTRRMYGKALQLSEWLETN----KK---LDFIERDYASCLDLIAKLRGLQKAESYIQKIPES------ 89 (460)
Q Consensus 23 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 89 (460)
....++.+...+...|++++|++.|+...+. .. .+....+|+.+...|...|++++|...+++....
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4456778888888999999999999876542 10 1223456888999999999999999998875332
Q ss_pred --C-CchhHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHH---hcCc-hHHHHHHHHHHHcCCCC
Q 012577 90 --F-RGEVVYRTLLANCVA--GNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYK---RLDK-KKVADVLLLMEKENVKL 160 (460)
Q Consensus 90 --~-~~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~---~~~~-~~a~~~~~~~~~~~~~~ 160 (460)
. ....++..+..++.. .+++++|...|++..+.. |-++..+..+..++. ..+. ++|.+.+++..+.. +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 1 124566666555544 457999999999998864 224555555544433 3344 77888888887764 45
Q ss_pred CHHHHHHHHHHHhh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHH
Q 012577 161 TQFSYKILIDIKGQ----SNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCR 236 (460)
Q Consensus 161 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 236 (460)
+...+..+...+.. .+++++|.+++++..... +.+..++..+...|...|++++|+..+++..+..+. +..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence 56666666555443 567899999999988765 567888999999999999999999999999886543 556676
Q ss_pred HHHHHHHhc-------------------CChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhccc
Q 012577 237 LLLPLYAEL-------------------GKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWK 295 (460)
Q Consensus 237 ~l~~~~~~~-------------------~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 295 (460)
.+..+|... +..+.|...++.... .| ....+..+...|...|++++|...|++..+...
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 666665432 234556666665544 34 455788899999999999999999999987654
Q ss_pred CcCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHH
Q 012577 296 KLSTK--HYTALLK-VYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSS 372 (460)
Q Consensus 296 ~p~~~--~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 372 (460)
.|... .+..+.. .+...|++++|...+++..+. .|+....... ...+.++++...+.++ .+..+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~l~~~~~~~l~~~p--~~~~~ 432 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDKLQKIAKMRLSKNG--ADSEA 432 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHHHHHHHHHHHHHCC---CTTH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHHHHHHHHHHHHhCC--CCHHH
Confidence 43221 2233332 345689999999999999884 4554332222 2344566666666553 44568
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCccHHHH
Q 012577 373 YMLIMDQYAKRGDIHSTEKIFHRMRQVG-YVARFKQF 408 (460)
Q Consensus 373 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~ 408 (460)
|..+..+|...|++++|++.|++..+.+ ..|+..+|
T Consensus 433 ~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 433 LHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 9999999999999999999999999865 23454444
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-15 Score=131.03 Aligned_cols=225 Identities=10% Similarity=-0.027 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC--CC----HHHH
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLK--EH----RWTC 235 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 235 (460)
...|..+...+...|++++|.++|++..+.. .+..++..+..++...|++++|+..+++..+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3467778888888999999999999888776 77888888888999999999999999888764321 12 4678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcc-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCC
Q 012577 236 RLLLPLYAELGKADQVARIWKLCES-NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKM 314 (460)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 314 (460)
..+..++...|++++|...++.... .|+. ..+.+.|++++|...++.+....+. +...+..+...+...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcC
Confidence 8888888899999999988887665 4543 3456677889999999988876433 56778888899999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012577 315 LSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFH 394 (460)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 394 (460)
+++|...++.+.+.. +.+..++..+...|.+.|++++|...++++.+..+ .+...|..+..++.+.|++++|.+.++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--NFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999998864 55788899999999999999999999999887653 346778888899999999999999999
Q ss_pred HHHHc
Q 012577 395 RMRQV 399 (460)
Q Consensus 395 ~m~~~ 399 (460)
+..+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.5e-15 Score=128.49 Aligned_cols=251 Identities=9% Similarity=-0.020 Sum_probs=195.8
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC--HHHHHHHHH
Q 012577 163 FSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEH--RWTCRLLLP 240 (460)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 240 (460)
..+......+...|++++|++.|++..+.. +.+...+..+..++...|++++|+..++++.+....++ ..+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345556778889999999999999998774 34566888888899999999999999999988432222 345788899
Q ss_pred HHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHH
Q 012577 241 LYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKG 318 (460)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 318 (460)
.+...|++++|...++.... .| +...+..+...|...|++++|...|++..+..+. +...+..+...+...+++++|
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988765 34 5668899999999999999999999999886433 667777777344445699999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC---hhhHHHHHHHHHHhCCCCcC------HHHHHHHHHHHHhcCCHHHH
Q 012577 319 KDLVKQMAESGCHIGPLAWDALVKLHVEGGE---VEKADSILLKAQQQNKFKPM------FSSYMLIMDQYAKRGDIHST 389 (460)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a 389 (460)
...++.+.+.. +.+...+..+...+...|+ +++|...++++.+...-.|+ ...|..+...|.+.|++++|
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999873 4557888888888888888 88899999998775433344 25777888999999999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 012577 390 EKIFHRMRQVGYVARFKQFQTLVQAYIN 417 (460)
Q Consensus 390 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 417 (460)
.+.|+++.+.. |.+...+..+......
T Consensus 241 ~~~~~~al~~~-p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 241 DAAWKNILALD-PTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHC-----
T ss_pred HHHHHHHHhcC-ccHHHHHHHhhhhhcc
Confidence 99999999876 5566666665544433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.8e-15 Score=137.82 Aligned_cols=346 Identities=11% Similarity=0.007 Sum_probs=240.5
Q ss_pred HHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCH---HHHHHHHHhcccCCCchhHHHHHHHHHHc
Q 012577 29 LAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGL---QKAESYIQKIPESFRGEVVYRTLLANCVA 105 (460)
Q Consensus 29 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~ll~~~~~ 105 (460)
.+...+.+.|++++|+++|+...+.+ +...+..+...|...|+. ++|...|++.... +...+..|...+..
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHh
Confidence 35666778899999999999988765 445666677777778888 8999999998864 66677777775555
Q ss_pred CC-----CHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 012577 106 GN-----NVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK----KKVADVLLLMEKENVKLTQFSYKILIDIKGQSN 176 (460)
Q Consensus 106 ~~-----~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 176 (460)
.+ ++++|...|++..+.|. ...+..|...|...+. .++.+.+......|. ...+..|...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCC
Confidence 54 78999999999999773 3367777777766554 455566666665552 445666777888888
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CChh
Q 012577 177 DLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGG---RKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAEL----GKAD 249 (460)
Q Consensus 177 ~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~ 249 (460)
.++++......+.+.-...+...+..|...|...| +.++|+..|++..+.|.. +...+..+...|... ++++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHH
Confidence 66655555333332211233348888999999999 999999999999998754 555556777777655 7999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHH-H--HccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcC-----CHHHHHHH
Q 012577 250 QVARIWKLCESNPWLDVCMAAIEA-W--GKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHK-----MLSKGKDL 321 (460)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~a~~~ 321 (460)
+|..+|+... ..+...+..+... + ...+++++|.+.|++..+.| +...+..|...|. .| ++++|...
T Consensus 235 ~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 235 TAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 9999999988 6677788888877 4 56899999999999998876 6677888888887 55 99999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHc----CCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 012577 322 VKQMAESGCHIGPLAWDALVKLHVE----GGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAK----RGDIHSTEKIF 393 (460)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~ 393 (460)
|+... . -++..+..+...|.. ..++++|..+|++..+.. .| .....|...|.. ..+.++|..+|
T Consensus 310 ~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~--~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 381 (452)
T 3e4b_A 310 FEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QN--SADFAIAQLFSQGKGTKPDPLNAYVFS 381 (452)
T ss_dssp HHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CT--THHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred HHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hH--HHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 99887 4 367788888888876 348999999999987643 23 355566666664 45899999999
Q ss_pred HHHHHcC
Q 012577 394 HRMRQVG 400 (460)
Q Consensus 394 ~~m~~~~ 400 (460)
+...+.|
T Consensus 382 ~~A~~~g 388 (452)
T 3e4b_A 382 QLAKAQD 388 (452)
T ss_dssp HHHHTTC
T ss_pred HHHHHCC
Confidence 9999988
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-12 Score=130.88 Aligned_cols=339 Identities=10% Similarity=0.098 Sum_probs=254.2
Q ss_pred HHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCH
Q 012577 30 AMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNV 109 (460)
Q Consensus 30 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 109 (460)
+...+...|.+++|..+|+... ......+.++ -..+++++|.++.+++ .+..+|..+..++.+.|++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLi---e~i~nldrAiE~Aerv----n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD------VNTSAVQVLI---EHIGNLDRAYEFAERC----NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHH---HHHhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCH
Confidence 4555667888888888887752 1112222232 2778899999988876 3477899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 012577 110 KKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAM 188 (460)
Q Consensus 110 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 188 (460)
++|++.|.+. -|...|..++..+.+.|+ +++.+.+....+.. ++....+.++.+|++.+++++...+.
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 9999999663 378888899999999999 99999998777654 33333445889999999988544332
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHH
Q 012577 189 KSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCM 268 (460)
Q Consensus 189 ~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 268 (460)
. .++...|..+...|...|++++|..+|... ..|..+..+|.+.|+++.|.+.+++. .+..+|.
T Consensus 1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA---~n~~aWk 1254 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA---NSTRTWK 1254 (1630)
T ss_pred -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh---CCHHHHH
Confidence 2 466777888999999999999999999985 47889999999999999999999875 5668899
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-
Q 012577 269 AAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG- 347 (460)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 347 (460)
.+..+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++...... +-....|+-+...|++.
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCC
Confidence 99999999999999988776432 366778899999999999999999998887654 44556776677777654
Q ss_pred -CChhhHHHHHHHHHHhCCCCc------CHHHHHHHHHHHHhcCCHHHHHHH-------------HHHHHHcCCCccHHH
Q 012577 348 -GEVEKADSILLKAQQQNKFKP------MFSSYMLIMDQYAKRGDIHSTEKI-------------FHRMRQVGYVARFKQ 407 (460)
Q Consensus 348 -~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~-------------~~~m~~~~~~~~~~~ 407 (460)
++..++.++|..- -.+.| +...|..++-.|.+.|+++.|... |++... -..|+..
T Consensus 1329 peklmEhlk~f~~r---ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~el 1403 (1630)
T 1xi4_A 1329 PQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVEL 1403 (1630)
T ss_pred HHHHHHHHHHHHHh---cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHH
Confidence 4555555555532 22322 356788999999999999988832 222221 2456777
Q ss_pred HHHHHHHHHhcC
Q 012577 408 FQTLVQAYINAK 419 (460)
Q Consensus 408 ~~~l~~~~~~~g 419 (460)
|...+.-|...+
T Consensus 1404 yykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1404 YYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHhhC
Confidence 777777777555
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-13 Score=120.42 Aligned_cols=224 Identities=13% Similarity=0.045 Sum_probs=185.8
Q ss_pred CHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHhCCCCCCHHHHH
Q 012577 161 TQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVS----GGRKEKAEAMLKEMEGDNLKEHRWTCR 236 (460)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 236 (460)
+..++..+...+...|++++|.+.|++..+. .+..++..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5567777888888889999999999888873 456778888888888 899999999999888876 567788
Q ss_pred HHHHHHHh----cCChhHHHHHHHHhccCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcccCcCHHHHHHHHHH
Q 012577 237 LLLPLYAE----LGKADQVARIWKLCESNPWLDVCMAAIEAWGK----LNKVEEAEAVFKRMSKTWKKLSTKHYTALLKV 308 (460)
Q Consensus 237 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 308 (460)
.+...|.. .+++++|...|+......+...+..+...|.. .+++++|...|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 88888888 89999999998887776677888888888888 899999999999888865 56677788888
Q ss_pred HHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 012577 309 YAD----HKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVE----GGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQY 380 (460)
Q Consensus 309 ~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (460)
|.. .+++++|...++...+.+ +...+..+...|.. .+++++|.+.|++..+.. | ...+..+...|
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~-~~a~~~l~~~~ 228 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---N-GGGCFNLGAMQ 228 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---C-HHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---C-HHHHHHHHHHH
Confidence 887 889999999999988864 56778888888888 899999999999887653 2 55777788888
Q ss_pred Hh----cCCHHHHHHHHHHHHHcC
Q 012577 381 AK----RGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 381 ~~----~g~~~~a~~~~~~m~~~~ 400 (460)
.+ .+++++|.+.|++..+.|
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HcCCCcccCHHHHHHHHHHHHHcC
Confidence 88 899999999999998876
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.5e-15 Score=124.16 Aligned_cols=210 Identities=15% Similarity=-0.002 Sum_probs=105.3
Q ss_pred CCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 012577 159 KLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLL 238 (460)
Q Consensus 159 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 238 (460)
+++...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..+..+. +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 4555566666667777777777777777766554 445666666777777777777777777776665432 44555555
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHH
Q 012577 239 LPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKG 318 (460)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 318 (460)
..++...+.. .+. .+...|++++|...|++..+..+. +...+..+...+...|++++|
T Consensus 80 g~~~~~~~~~------------~~~---------~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 80 SEAYVALYRQ------------AED---------RERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp HHHHHHHHHT------------CSS---------HHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhhhh------------hhh---------hcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHH
Confidence 5555555000 000 000115555555555555543322 344455555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012577 319 KDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRM 396 (460)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 396 (460)
...|++..+.. .+...+..+..+|...|++++|+..|+++.+..+ .+...+..+..++.+.|++++|++.+++.
T Consensus 138 ~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 138 EASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP--KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55555555544 4455555555555555555555555555554432 22344455555555555555555555543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.6e-15 Score=123.16 Aligned_cols=188 Identities=14% Similarity=0.024 Sum_probs=130.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHh
Q 012577 234 TCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYAD 311 (460)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 311 (460)
.+..+...+...|++++|...|+.... .| +...+..+...+.+.|++++|...|++..+..+. +...+..+...+..
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~ 85 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSEAYVA 85 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 333444444444444444444443322 22 3334555555555566666666666665554332 45556666666666
Q ss_pred c-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 012577 312 H-----------KMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQY 380 (460)
Q Consensus 312 ~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (460)
. |++++|...++...+.. +-+...+..+...+...|++++|+..|+++.+.. .+...+..+..++
T Consensus 86 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~la~~~ 161 (217)
T 2pl2_A 86 LYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE---DTPEIRSALAELY 161 (217)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHH
T ss_pred hhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cchHHHHHHHHHH
Confidence 6 99999999999999874 4568899999999999999999999999998875 5677899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHH
Q 012577 381 AKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRD 427 (460)
Q Consensus 381 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~ 427 (460)
...|++++|+..|++..+.. |.+...+..+...+...|+ .+...++
T Consensus 162 ~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999999999999986 6788899999999999998 4444443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=5.2e-14 Score=127.39 Aligned_cols=248 Identities=8% Similarity=-0.005 Sum_probs=201.6
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR-KEKAEAMLKEMEGDNLKEHRWTCRLLLP 240 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 240 (460)
...|..+...+.+.|++++|++.++++.+.. +-+..+|+.+..++...|+ +++|+..|+++++.... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 3467778888889999999999999998775 5568889999999999996 99999999999887654 6788899999
Q ss_pred HHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHh-cCCHHH
Q 012577 241 LYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYAD-HKMLSK 317 (460)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~ 317 (460)
++...|++++|+..|+++.. .| +...|..+..++.+.|++++|+..|+++++..+. +...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999998766 44 6678999999999999999999999999987665 78889999999998 666577
Q ss_pred H-----HHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--ChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC------
Q 012577 318 G-----KDLVKQMAESGCHIGPLAWDALVKLHVEGG--EVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRG------ 384 (460)
Q Consensus 318 a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 384 (460)
| +..++..++.. +-+...|..+...+...| ++++|.+.+.++ +. ...+...+..+..+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~--~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP--SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT--TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc--CCCCHHHHHHHHHHHHHHhcccccc
Confidence 7 48888888864 457788988888888888 689999988887 32 2345677888888888864
Q ss_pred ---CHHHHHHHHHHH-HHcCCCccHHHHHHHHHHHHh
Q 012577 385 ---DIHSTEKIFHRM-RQVGYVARFKQFQTLVQAYIN 417 (460)
Q Consensus 385 ---~~~~a~~~~~~m-~~~~~~~~~~~~~~l~~~~~~ 417 (460)
..++|+++|+++ .+.+ +.....|..+...+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHH
Confidence 358999999998 6654 5556677777766654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-14 Score=122.84 Aligned_cols=119 Identities=13% Similarity=0.022 Sum_probs=73.6
Q ss_pred HhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHH
Q 012577 243 AELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKD 320 (460)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 320 (460)
...|++++|...++.... .| +...+..+...+...|++++|...++++.+..+. +..++..+...|...|++++|..
T Consensus 116 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 194 (258)
T 3uq3_A 116 TKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIA 194 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHH
Confidence 334444555555444433 22 2334555666666666667777766666665432 55667777777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Q 012577 321 LVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (460)
.++.+.+.. +.+...+..+...+.+.|++++|.+.++++.+.
T Consensus 195 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 195 DCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 777776653 445666777777777777777777777776554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-13 Score=118.71 Aligned_cols=201 Identities=10% Similarity=-0.033 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPL 241 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (460)
...|..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 3456667777777777777777777776653 44566777777777777777777777777665432 234455555555
Q ss_pred HHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCc-CHHHHHHHHHHHHhcCCHHHHHH
Q 012577 242 YAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKL-STKHYTALLKVYADHKMLSKGKD 320 (460)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~ 320 (460)
|...|++++|...++.+ .+.+..| +...+..+...+...|++++|..
T Consensus 115 ~~~~g~~~~A~~~~~~~--------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEA--------------------------------SQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp HHHTTCHHHHHHHHHHH--------------------------------TTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhHHHHHHHHHHHH--------------------------------HhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555444 3311111 23344444455555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 321 LVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
.++.+.+.. +.+...+..+...+...|++++|..+++++.+.. ..+...+..+...+.+.|++++|.++++++.+.
T Consensus 163 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 163 YFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG--GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555554432 2334455555555555555555555555554432 123344455555555555555555555555554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-13 Score=116.78 Aligned_cols=205 Identities=9% Similarity=0.027 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcc-C-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHH
Q 012577 233 WTCRLLLPLYAELGKADQVARIWKLCES-N-PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYA 310 (460)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 310 (460)
..+..+...+...|++++|...++.+.. . .+...+..+...+...|++++|.+.++++.+.... +...+..+...|.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHH
Confidence 3444555555555666666655555433 2 24556677777788888888888888888776443 6788899999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 012577 311 DHKMLSKGKDLVKQMAESGCHI-GPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHST 389 (460)
Q Consensus 311 ~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 389 (460)
..|++++|..+++.+.+.+..| +...+..+...+...|++++|.+.++++.+..+ .+...+..+...+.+.|++++|
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR--NQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998733334 567888899999999999999999999987653 3567888999999999999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHHhCCCCcCHHHHHH
Q 012577 390 EKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMRADNVFPNKALAAQ 443 (460)
Q Consensus 390 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~~~~~~ 443 (460)
...++++.+.. +.+...+..+...+...|+ .+...++.+.+. .|+...+..
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~ 247 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHH
Confidence 99999999875 6678889999999999999 566777777653 455544433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=9.1e-13 Score=114.51 Aligned_cols=177 Identities=11% Similarity=0.022 Sum_probs=92.0
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 012577 175 SNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVS----GGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE----LG 246 (460)
Q Consensus 175 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 246 (460)
.+++++|.+.|++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+
T Consensus 55 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCccc
Confidence 444444444444444332 33444444444444 444444444444444432 33344444444444 44
Q ss_pred ChhHHHHHHHHhccCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHh----cCCHHHH
Q 012577 247 KADQVARIWKLCESNPWLDVCMAAIEAWGK----LNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYAD----HKMLSKG 318 (460)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a 318 (460)
++++|...|++.....+...+..+...|.. .+++++|...|+...+.+ +...+..+...|.. .+++++|
T Consensus 129 ~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A 205 (273)
T 1ouv_A 129 DFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEA 205 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 444444444444333334444444444544 556666666666555542 34555566666666 6666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChhhHHHHHHHHHHh
Q 012577 319 KDLVKQMAESGCHIGPLAWDALVKLHVE----GGEVEKADSILLKAQQQ 363 (460)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~ 363 (460)
...++...+.+ +...+..+...|.+ .+++++|.+.|++..+.
T Consensus 206 ~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 206 LARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 66666666653 25555666666666 66777777777666554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.1e-14 Score=120.62 Aligned_cols=202 Identities=10% Similarity=0.019 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012577 161 TQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLP 240 (460)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 240 (460)
....|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|+..++++.+... .+..++..+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l-- 97 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGA-- 97 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHH--
Confidence 33455556666666666666666666666543 34456666666666666666666666666654432 133444444
Q ss_pred HHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHH
Q 012577 241 LYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKD 320 (460)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 320 (460)
...+...|++++|.+.++++.+.... +...+..+...+...|++++|..
T Consensus 98 ------------------------------a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~ 146 (243)
T 2q7f_A 98 ------------------------------GNVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALP 146 (243)
T ss_dssp ------------------------------HHHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHH
T ss_pred ------------------------------HHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHH
Confidence 44444455555555555554443322 44455555555555666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 321 LVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
.++.+.+.. +.+...+..+...+.+.|++++|.+.++++.+..+ .+...+..+..++.+.|++++|.+.++++.+..
T Consensus 147 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 147 YLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP--GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 666555542 33455555566666666666666666666554432 234455556666666666666666666666543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-13 Score=115.00 Aligned_cols=202 Identities=11% Similarity=-0.013 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPL 241 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (460)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------------- 73 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP------------- 73 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-------------
Confidence 3345555555555566666666665555442 33445555555555555555555555555544321
Q ss_pred HHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhcccCc-CHHHHHHHHHHHHhcCCHHHHH
Q 012577 242 YAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKL-NKVEEAEAVFKRMSKTWKKL-STKHYTALLKVYADHKMLSKGK 319 (460)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~ 319 (460)
.+...+..+...+... |++++|...++.+.+.+..| +...+..+...+...|++++|.
T Consensus 74 --------------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 133 (225)
T 2vq2_A 74 --------------------DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAE 133 (225)
T ss_dssp --------------------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 1233444445555555 55555555555555421112 2345555556666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 320 DLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
..++.+.+.. +.+...+..+...+.+.|++++|.++++++.+..+ ..+...+..+...+...|+.++|..+++.+.+.
T Consensus 134 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 134 AYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE-VLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 6666665542 33455566666666666666666666666655432 023344555555566666666666666666544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.5e-13 Score=112.56 Aligned_cols=206 Identities=10% Similarity=0.015 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHH
Q 012577 233 WTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYA 310 (460)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 310 (460)
..+..+...+...|++++|...++.... .| +...+..+...+...|++++|.+.++++.+.... +..++..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 3444555555555555555555554433 22 3456677777788888888888888888876443 6788999999999
Q ss_pred hc-CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 012577 311 DH-KMLSKGKDLVKQMAESGCHI-GPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHS 388 (460)
Q Consensus 311 ~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 388 (460)
.. |++++|...++.+.+.+..| +...+..+...+...|++++|...++++.+..+ .+...+..+...+.+.|++++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP--QFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTCHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHH
Confidence 99 99999999999998833233 367888999999999999999999999987653 346788899999999999999
Q ss_pred HHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCC--chhhhHHHHHhCCCCcCHHHHHHH
Q 012577 389 TEKIFHRMRQVGYV-ARFKQFQTLVQAYINAKT--PAYGIRDRMRADNVFPNKALAAQV 444 (460)
Q Consensus 389 a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~~~~~~l 444 (460)
|.+.++++.+.. + .+...+..+...+...|+ .+..+++.+.. ..|+......+
T Consensus 166 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~ 221 (225)
T 2vq2_A 166 ADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSEELQTV 221 (225)
T ss_dssp HHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 999999999875 5 677888888888888888 45555666554 34665544433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=6.4e-14 Score=119.42 Aligned_cols=201 Identities=14% Similarity=0.049 Sum_probs=124.3
Q ss_pred CChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012577 126 VTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILA 204 (460)
Q Consensus 126 ~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~ 204 (460)
.....+..+...+...|+ ++|...|++..+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 345667777778888888 89999999998764 5578889999999999999999999999998765 55788999999
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHH
Q 012577 205 KHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAE 284 (460)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 284 (460)
..+...|++++|...++++.+... .+...+..+...+...|++++|...++..
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-------------------------- 151 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRA-------------------------- 151 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHH--------------------------
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHH--------------------------
Confidence 999999999999999999887643 24455555555555555555555555543
Q ss_pred HHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Q 012577 285 AVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 285 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (460)
.+... .+...+..+...+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|.+.++++.+.
T Consensus 152 ------~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 152 ------VELNE-NDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp ------HHHCT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred ------HHhCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 33221 134445555555555555555555555555442 334555555555666666666666666655544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-13 Score=119.85 Aligned_cols=175 Identities=9% Similarity=-0.045 Sum_probs=77.6
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE 244 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (460)
|..+...+...|++++|++.|++..+.. +.+..++..+...|...|++++|+..|++..+... .+...+..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHH
Confidence 3344444444444444444444444332 22334444444444444444444444444443311 123333333312222
Q ss_pred cCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCC---HHHHHHHHHHHHhcc-cCcC------HHHHHHHHHHHHhc
Q 012577 245 LGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNK---VEEAEAVFKRMSKTW-KKLS------TKHYTALLKVYADH 312 (460)
Q Consensus 245 ~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~-~~p~------~~~~~~li~~~~~~ 312 (460)
.+++++|...|+.... .| +...+..+...+...|+ +++|...+++..+.. ..|+ ..+|..+...|...
T Consensus 155 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 2344444444444332 22 23334444444444444 444555555444321 1111 14556666666667
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012577 313 KMLSKGKDLVKQMAESGCHIGPLAWDALVK 342 (460)
Q Consensus 313 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 342 (460)
|++++|...++.+.+.. +.+......+..
T Consensus 235 ~~~~~A~~~~~~al~~~-p~~~~a~~~l~~ 263 (272)
T 3u4t_A 235 RDKVKADAAWKNILALD-PTNKKAIDGLKM 263 (272)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHhcC-ccHHHHHHHhhh
Confidence 77777777777766653 334444444433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-13 Score=123.14 Aligned_cols=246 Identities=9% Similarity=-0.023 Sum_probs=147.3
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012577 93 EVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIK 172 (460)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 172 (460)
...|..+...+.+.|++++|++.|++.++.. +-+...|+.+..++
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-----------------------------------P~~~~a~~~~g~~l 141 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-----------------------------------AANYTVWHFRRVLL 141 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-----------------------------------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-----------------------------------ccCHHHHHHHHHHH
Confidence 4556666667777777777777777766653 22344555555555
Q ss_pred hhcCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 012577 173 GQSND-LTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQV 251 (460)
Q Consensus 173 ~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 251 (460)
...|+ +++|++.|+++.+.. +.+...|..+..++...|++++|+..|+++++.+.. +...|..+..++...|++++|
T Consensus 142 ~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eA 219 (382)
T 2h6f_A 142 KSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNE 219 (382)
T ss_dssp HHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTH
T ss_pred HHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHH
Confidence 55554 666666666655543 334555666666666666666666666666554432 445555666666666666666
Q ss_pred HHHHHHhcc-CC-CHHHHHHHHHHHHc-cCCHHHH-----HHHHHHHHhcccCcCHHHHHHHHHHHHhcC--CHHHHHHH
Q 012577 252 ARIWKLCES-NP-WLDVCMAAIEAWGK-LNKVEEA-----EAVFKRMSKTWKKLSTKHYTALLKVYADHK--MLSKGKDL 321 (460)
Q Consensus 252 ~~~~~~~~~-~~-~~~~~~~li~~~~~-~~~~~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~ 321 (460)
+..++++.. .| +...|+.+...+.+ .|..++| +..|++.++..+. +...|..+...+...| ++++|.+.
T Consensus 220 l~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~ 298 (382)
T 2h6f_A 220 LQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQ 298 (382)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHH
Confidence 666655444 33 44456666666666 4443555 4667776665443 5667777777777776 57777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCC---------ChhhHHHHHHHH-HHhCCCCcCHHHHHHHHHHH
Q 012577 322 VKQMAESGCHIGPLAWDALVKLHVEGG---------EVEKADSILLKA-QQQNKFKPMFSSYMLIMDQY 380 (460)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~li~~~~~~~---------~~~~a~~~~~~~-~~~~~~~~~~~~~~~l~~~~ 380 (460)
+..+ +. .+.+...+..+...|.+.| .+++|.++++++ .+.++..+ ..|..+...+
T Consensus 299 ~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~--~~w~~~~~~l 363 (382)
T 2h6f_A 299 LLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRK--EYWRYIGRSL 363 (382)
T ss_dssp HHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGH--HHHHHHHHHH
T ss_pred HHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhH--HHHHHHHHHH
Confidence 7776 32 3445677777777777653 247788888887 55443222 3444444443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=8e-14 Score=121.24 Aligned_cols=63 Identities=11% Similarity=0.024 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEG 225 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (460)
..+|..+...+...|++++|.+.|+++.+.. +.+..++..+..++...|++++|...|+++.+
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4444444445555555555555555544432 22344444445555555555555555554444
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.9e-13 Score=116.84 Aligned_cols=223 Identities=11% Similarity=0.034 Sum_probs=142.0
Q ss_pred hhcCChhHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 012577 173 GQSNDLTGMDQVVEAMKSEGI---EPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKAD 249 (460)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 249 (460)
...|++++|++.|+++.+... +.+..++..+...+...|++++|...|+++.+... .+..++..+..+|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHH
Confidence 344667777777777765421 11345666667777777777777777777766543 24566677777777777777
Q ss_pred HHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 250 QVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 250 ~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 327 (460)
+|...++.... .| +...+..+...|...|++++|...|+.+.+.. |+.......+..+...|++++|...++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 77777776554 33 45567777777777777777777777777643 3333344444455566777888887777666
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCC-C-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 328 SGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKF-K-PMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 328 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
.. +++...+. ++..+...++.++|.+.+.++....+- . .+...+..+...+.+.|++++|...|+++.+..
T Consensus 173 ~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 173 KS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 52 34444433 555666667777777777766432210 0 013566777777888888888888888877654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-13 Score=126.67 Aligned_cols=298 Identities=10% Similarity=-0.042 Sum_probs=182.0
Q ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012577 92 GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDI 171 (460)
Q Consensus 92 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 171 (460)
....+......+...|++++|...|++..+.+.. +.... ..++..+...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~------------------------------~~~~~~l~~~ 56 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTL------------------------------SAIYSQLGNA 56 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHH------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHH------------------------------HHHHHHHHHH
Confidence 4455666677777888888888888877765311 11000 1234444445
Q ss_pred HhhcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHH
Q 012577 172 KGQSNDLTGMDQVVEAMKSE----GIEP-DSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLK-EH----RWTCRLLLPL 241 (460)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~ 241 (460)
+...|++++|...+++.... +-.| ...++..+...+...|++++|...+++..+.... ++ ..++..+...
T Consensus 57 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 57 YFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV 136 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 55555555555555443321 1011 1334444555555555555555555544432100 01 2345555555
Q ss_pred HHhcCC--------------------hhHHHHHHHHhcc----CC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 012577 242 YAELGK--------------------ADQVARIWKLCES----NP----WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT 293 (460)
Q Consensus 242 ~~~~~~--------------------~~~a~~~~~~~~~----~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 293 (460)
|...|+ +++|...++.... .+ ...++..+...|...|++++|...+++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555565 5555555544322 11 1235677777888888888888888877653
Q ss_pred ccC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Q 012577 294 WKK-LS----TKHYTALLKVYADHKMLSKGKDLVKQMAESGC-HIG----PLAWDALVKLHVEGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 294 ~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (460)
... ++ ..++..+...|...|++++|...+++..+... ..+ ..++..+...|...|++++|.+.++++.+.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 211 11 23678888889999999999999888765310 011 467788888999999999999999888664
Q ss_pred CCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CccHHHHHHHHHHHHhcCC
Q 012577 364 NKFKPM----FSSYMLIMDQYAKRGDIHSTEKIFHRMRQV----GY-VARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 364 ~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~~~l~~~~~~~g~ 420 (460)
..-.++ ..++..+...|.+.|++++|.+.+++..+. +. +....++..+...+...|+
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhH
Confidence 322222 456778888999999999999999987653 21 2235577778888888886
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-10 Score=112.35 Aligned_cols=432 Identities=9% Similarity=0.032 Sum_probs=294.8
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhC---HHHHHHHHHhc
Q 012577 10 STLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRG---LQKAESYIQKI 86 (460)
Q Consensus 10 ~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~ 86 (460)
..+++-+.. .+.+......++..+.+.+.++.+..+|+.+... +|.....|...+..-.+.++ ++.+..+|+..
T Consensus 53 ~~lE~~l~~-np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 53 GKLNDMIEE-QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHH-CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 344544443 4579999999999999999999999999999887 47778888888888888888 99999999998
Q ss_pred ccCC---CchhHHHHHHHHHHcCCCH--------HHHHHHHHHHHh-CCC-CCC-hhhhHHHHHHHHhc---------Cc
Q 012577 87 PESF---RGEVVYRTLLANCVAGNNV--------KKAEEVFNRMKD-KGF-PVT-SFACNQLLILYKRL---------DK 143 (460)
Q Consensus 87 ~~~~---~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~m~~-~g~-~~~-~~~~~~ll~~~~~~---------~~ 143 (460)
.... |++..|...+....+.++. +.+.++|+..+. .|. .|+ ...|...+...... +.
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 8876 8888998888766554443 345578887654 465 443 46777777654321 22
Q ss_pred -hHHHHHHHHHHHcCCCCCHHHHHH---HHHHHh----------hcCChhHHHHHHHHHHh--CCC----C---------
Q 012577 144 -KKVADVLLLMEKENVKLTQFSYKI---LIDIKG----------QSNDLTGMDQVVEAMKS--EGI----E--------- 194 (460)
Q Consensus 144 -~~a~~~~~~~~~~~~~~~~~~~~~---li~~~~----------~~~~~~~a~~~~~~m~~--~g~----~--------- 194 (460)
+.+..+|+.........-..+|.. ...... ...+++.|...+.++.. .++ +
T Consensus 210 ~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~ 289 (679)
T 4e6h_A 210 VQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATES 289 (679)
T ss_dssp HHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTT
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhc
Confidence 567788888875322212233322 222110 11233445555554321 111 1
Q ss_pred --C-----C---HHHHHHHHHHHHhCC-------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH-HHHH
Q 012577 195 --P-----D---SSTQAILAKHYVSGG-------RKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVA-RIWK 256 (460)
Q Consensus 195 --~-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~ 256 (460)
| + ...|...+..--..+ ..+.+..+|++++..- +-....|...+..+...|+.++|. .+++
T Consensus 290 ~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~ 368 (679)
T 4e6h_A 290 NLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLK 368 (679)
T ss_dssp TSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHH
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 1 1 134555554333322 1234567788887653 336778888888888899999996 9998
Q ss_pred Hhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhccc---------CcC------------HHHHHHHHHHHHhcC
Q 012577 257 LCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWK---------KLS------------TKHYTALLKVYADHK 313 (460)
Q Consensus 257 ~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---------~p~------------~~~~~~li~~~~~~g 313 (460)
+... .| +...|...+...-+.|+++.|.++|+.+.+... .|+ ...|...+....+.|
T Consensus 369 rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~ 448 (679)
T 4e6h_A 369 LGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ 448 (679)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC
Confidence 7655 45 455677788888899999999999999886421 132 346888888888899
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 012577 314 MLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG-GEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKI 392 (460)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 392 (460)
..+.|..+|..+.+.-.......|...+..-.+. ++.+.|..+|+..++..+ -+...|...+......|+.+.|..+
T Consensus 449 ~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~l 526 (679)
T 4e6h_A 449 GLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSL 526 (679)
T ss_dssp CHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999998761122344454444444444 459999999999998754 3445677888888889999999999
Q ss_pred HHHHHHcCCC--ccHHHHHHHHHHHHhcCC--chhhhHHHHHhCCCCcCHHHHHHHHHHHHHh
Q 012577 393 FHRMRQVGYV--ARFKQFQTLVQAYINAKT--PAYGIRDRMRADNVFPNKALAAQVAQVDAFR 451 (460)
Q Consensus 393 ~~~m~~~~~~--~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 451 (460)
|++....... -....|..+++--.+.|+ .+..+.+++... .|+......+ ++.|+
T Consensus 527 feral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f--~~ry~ 585 (679)
T 4e6h_A 527 FESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEF--TNKYK 585 (679)
T ss_dssp HHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHH--HHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHH--HHHhc
Confidence 9999986522 245689999988889998 577778777774 4666666666 55553
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-13 Score=126.84 Aligned_cols=271 Identities=10% Similarity=-0.055 Sum_probs=158.7
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh----hhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012577 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTS----FACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILI 169 (460)
Q Consensus 94 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 169 (460)
..+..+...+...|++++|...|++..+.+.. +. ..+..+...|..
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~----------------------------- 98 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFY----------------------------- 98 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHH-----------------------------
Confidence 34555667778888888888888888775321 21 233444444444
Q ss_pred HHHhhcCChhHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC----C-CCCCHHHHHHHH
Q 012577 170 DIKGQSNDLTGMDQVVEAMKSE----GI-EPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD----N-LKEHRWTCRLLL 239 (460)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~ 239 (460)
.|++++|.+.+++..+. +- +....++..+...|...|++++|...+++..+. + ......++..+.
T Consensus 99 -----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 173 (411)
T 4a1s_A 99 -----LGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLG 173 (411)
T ss_dssp -----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 44444444444443321 00 111233444444455555555555554444322 0 011123444455
Q ss_pred HHHHhcCC-----------------hhHHHHHHHHhcc-------CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc
Q 012577 240 PLYAELGK-----------------ADQVARIWKLCES-------NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTW 294 (460)
Q Consensus 240 ~~~~~~~~-----------------~~~a~~~~~~~~~-------~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 294 (460)
..|...|+ +++|...+++... .+ ....+..+...|...|++++|...+++..+..
T Consensus 174 ~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (411)
T 4a1s_A 174 NVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA 253 (411)
T ss_dssp HHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 55555555 5555555443221 01 12356667777777888888888777766532
Q ss_pred cC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhC
Q 012577 295 KK-LS----TKHYTALLKVYADHKMLSKGKDLVKQMAESGCH-----IGPLAWDALVKLHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 295 ~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
.. ++ ..++..+...|...|++++|...+++..+.... ....++..+...|...|++++|.+.++++.+..
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 254 REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11 11 236777888888888888888888877653110 114667778888888899999988888876542
Q ss_pred CCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 365 KFKPM----FSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 365 ~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
.-..+ ..++..+..+|.+.|++++|.+.+++..+.
T Consensus 334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 334 QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11111 346777888888999999999999988865
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.56 E-value=8.4e-12 Score=110.40 Aligned_cols=219 Identities=11% Similarity=-0.008 Sum_probs=160.7
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------hCCCh-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012577 179 TGMDQVVEAMKSEGIEPDSSTQAILAKHYV-------SGGRK-------EKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE 244 (460)
Q Consensus 179 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (460)
++|..+|++..... +.+...|..++..+. +.|++ ++|..+|++..+.-.+-+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777653 456667777766665 34665 7888888888773112245577778888888
Q ss_pred cCChhHHHHHHHHhcc-CCC-HH-HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHH-hcCCHHHHHH
Q 012577 245 LGKADQVARIWKLCES-NPW-LD-VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYA-DHKMLSKGKD 320 (460)
Q Consensus 245 ~~~~~~a~~~~~~~~~-~~~-~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~ 320 (460)
.|++++|..+|++... .|+ .. .|..++..+.+.|++++|..+|++..+..+ ++...|........ ..|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887665 342 33 688888888888889999999988887643 24455544433322 3689999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 321 LVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKP--MFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
+|+...+. .+.+...|..++..+.+.|++++|..+|+++.....+.| ....|..++..+.+.|+.++|..+++++.+
T Consensus 191 ~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99998876 345788888889999999999999999999887543444 356788888888889999999999999887
Q ss_pred cC
Q 012577 399 VG 400 (460)
Q Consensus 399 ~~ 400 (460)
..
T Consensus 270 ~~ 271 (308)
T 2ond_A 270 AF 271 (308)
T ss_dssp HT
T ss_pred Hc
Confidence 63
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-12 Score=122.38 Aligned_cols=322 Identities=13% Similarity=0.059 Sum_probs=213.4
Q ss_pred HHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCH---HHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcC
Q 012577 66 CLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNV---KKAEEVFNRMKDKGFPVTSFACNQLLILYKRLD 142 (460)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 142 (460)
+...+.+.|++++|.++|++..+. .+...+..|...|...|+. ++|...|++..+. ++..+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~-g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL-GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TCCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 567778899999999999997654 3455566666777778888 9999999998864 5566666666454444
Q ss_pred -----c-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChh---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh
Q 012577 143 -----K-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLT---GMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRK 213 (460)
Q Consensus 143 -----~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~ 213 (460)
+ ++|...|++..+.|. ++ .+..|...|...+..+ ++.+.+......| +...+..|...|...+.+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 3 789999999988773 33 5666777777665543 4555555555544 345666777788887755
Q ss_pred HHHH----HHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHhccC--CCHHHHHHHHHHHHcc----CCH
Q 012577 214 EKAE----AMLKEMEGDNLKEHRWTCRLLLPLYAELG---KADQVARIWKLCESN--PWLDVCMAAIEAWGKL----NKV 280 (460)
Q Consensus 214 ~~a~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~--~~~~~~~~li~~~~~~----~~~ 280 (460)
+++. .+++..... ++..+..+...|...| +.++|...|+..... +....+..+...|... +++
T Consensus 158 ~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 158 DQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp GGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred ccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCH
Confidence 5444 444444332 2337888999999999 899999999887663 3444447778888665 799
Q ss_pred HHHHHHHHHHHhcccCcCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----CChhhH
Q 012577 281 EEAEAVFKRMSKTWKKLSTKHYTALLKV-Y--ADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG----GEVEKA 353 (460)
Q Consensus 281 ~~a~~~~~~m~~~~~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a 353 (460)
++|...|+... .| +...+..|... + ...+++++|...|+...+.| +...+..+...|... .++++|
T Consensus 234 ~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A 306 (452)
T 3e4b_A 234 KTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYYEGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred HHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 99999999988 33 56677777776 4 46899999999999999887 677888888888732 299999
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 012577 354 DSILLKAQQQNKFKPMFSSYMLIMDQYAK----RGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYIN 417 (460)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 417 (460)
.++|++.. . -+...+..+...|.. ..++++|..+|++..+.|. ......|...|..
T Consensus 307 ~~~~~~Aa--~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 307 EAHFEKAV--G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQ 366 (452)
T ss_dssp HHHHHTTT--T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHS
T ss_pred HHHHHHHh--C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHh
Confidence 99999876 2 245567777777766 3499999999999998873 3345556666654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.6e-13 Score=120.62 Aligned_cols=274 Identities=11% Similarity=-0.037 Sum_probs=161.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 012577 95 VYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQ 174 (460)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 174 (460)
.+......+...|++++|...|++..+.... +... -...+..+...+..
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~------------------------------~~~~~~~l~~~~~~ 55 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKT------------------------------LSAIYSQLGNAYFY 55 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHH------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHH------------------------------HHHHHHHHHHHHHH
Confidence 3445556677778888888888777765311 1100 01234444445555
Q ss_pred cCChhHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHh
Q 012577 175 SNDLTGMDQVVEAMKSE----GIE-PDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLK-EH----RWTCRLLLPLYAE 244 (460)
Q Consensus 175 ~~~~~~a~~~~~~m~~~----g~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~ 244 (460)
.|++++|.+.+++..+. +-. ....++..+...+...|++++|...+++..+.... ++ ..++..+...+..
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 56 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 55555555555443321 101 11334445555555555555555555554331100 11 2244555555555
Q ss_pred cCC--------------------hhHHHHHHHHhcc----CC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccC
Q 012577 245 LGK--------------------ADQVARIWKLCES----NP----WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKK 296 (460)
Q Consensus 245 ~~~--------------------~~~a~~~~~~~~~----~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 296 (460)
.|+ +++|...++.... .+ ....+..+...+...|++++|...+++..+....
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 555 5555555544321 11 1235666777778888888888888776643111
Q ss_pred -----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCC
Q 012577 297 -----LSTKHYTALLKVYADHKMLSKGKDLVKQMAESGC-HIG----PLAWDALVKLHVEGGEVEKADSILLKAQQQNKF 366 (460)
Q Consensus 297 -----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 366 (460)
....++..+...+...|++++|...+++..+... ..+ ..++..+...|...|++++|...++++.+...-
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 1123677788888888999999888888765310 011 456777888888999999999998887654321
Q ss_pred CcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 367 KPM----FSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 367 ~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
..+ ..++..+...|.+.|++++|.+.+++..+.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 111 346777888889999999999999988864
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.54 E-value=9.7e-13 Score=120.43 Aligned_cols=228 Identities=10% Similarity=0.024 Sum_probs=172.2
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-C-----CHHHHH
Q 012577 168 LIDIKGQSNDLTGMDQVVEAMKSEG-IEP----DSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLK-E-----HRWTCR 236 (460)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~m~~~g-~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 236 (460)
....+...|++++|.+.|++..+.- -.+ ...++..+...|...|++++|...+++..+.... + ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 5567788999999999999987641 012 2467888999999999999999999988753111 1 235778
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcc----CCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHh-----cccCcCHHHHH
Q 012577 237 LLLPLYAELGKADQVARIWKLCES----NPWL----DVCMAAIEAWGKLNKVEEAEAVFKRMSK-----TWKKLSTKHYT 303 (460)
Q Consensus 237 ~l~~~~~~~~~~~~a~~~~~~~~~----~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~ 303 (460)
.+..+|...|++++|...++.... .++. .++..+...|...|++++|.+.+++..+ ...+....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888999999999999999886543 2222 3678889999999999999999998876 22133466788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHcCCC---hhhHHHHHHHHHHhCCCCcCHHHHHHH
Q 012577 304 ALLKVYADHKMLSKGKDLVKQMAES----GCHIGPLAWDALVKLHVEGGE---VEKADSILLKAQQQNKFKPMFSSYMLI 376 (460)
Q Consensus 304 ~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l 376 (460)
.+...|...|++++|...+++..+. +-+.....+..+...|...|+ +++|..++++.. ........+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHHHHHHH
Confidence 8999999999999999999988653 111122345667788888888 777777776641 112233567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 012577 377 MDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 377 ~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
...|.+.|++++|.+.+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999998875
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-12 Score=120.40 Aligned_cols=269 Identities=12% Similarity=-0.037 Sum_probs=205.2
Q ss_pred CCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHhC----CCCC
Q 012577 159 KLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD----SSTQAILAKHYVSGGRKEKAEAMLKEMEGD----NLKE 230 (460)
Q Consensus 159 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 230 (460)
.+....+......+...|++++|...|++..+.+ +.+ ..++..+...+...|++++|...+++.... +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4456667778889999999999999999998764 333 357888999999999999999999987542 2122
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHhcc----CCC----HHHHHHHHHHHHccCC--------------------HH
Q 012577 231 -HRWTCRLLLPLYAELGKADQVARIWKLCES----NPW----LDVCMAAIEAWGKLNK--------------------VE 281 (460)
Q Consensus 231 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~~li~~~~~~~~--------------------~~ 281 (460)
...++..+...|...|++++|...++.... .++ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 245678888999999999999999886544 122 3367888899999999 99
Q ss_pred HHHHHHHHHHhc----c-cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCChh
Q 012577 282 EAEAVFKRMSKT----W-KKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGC-HIG----PLAWDALVKLHVEGGEVE 351 (460)
Q Consensus 282 ~a~~~~~~m~~~----~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~ 351 (460)
+|...+++..+. + ......++..+...|...|++++|...+++..+... .++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999877643 1 111235688889999999999999999999875310 122 247888899999999999
Q ss_pred hHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCc-cHHHHHHHHHHHHhcCC--
Q 012577 352 KADSILLKAQQQNKFKPM----FSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG----YVA-RFKQFQTLVQAYINAKT-- 420 (460)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~----~~~-~~~~~~~l~~~~~~~g~-- 420 (460)
+|...+++..+..+-.++ ..++..+...+...|++++|.+.+++..+.. -.+ ...++..+...|...|+
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999988754321122 4577888999999999999999999887631 111 15678889999999999
Q ss_pred chhhhHHH
Q 012577 421 PAYGIRDR 428 (460)
Q Consensus 421 ~~~~~~~~ 428 (460)
.+...++.
T Consensus 325 ~A~~~~~~ 332 (406)
T 3sf4_A 325 QAMHFAEK 332 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.2e-13 Score=124.11 Aligned_cols=275 Identities=13% Similarity=-0.019 Sum_probs=181.7
Q ss_pred hhhHHHHHHHHHhhCHHHHHHHHHhcccCCCc-h----hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHH
Q 012577 61 RDYASCLDLIAKLRGLQKAESYIQKIPESFRG-E----VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLL 135 (460)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 135 (460)
..+..+...+...|++++|...|++.....|+ . ..|..+...|...|++++|...|++..+..
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------ 116 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA------------ 116 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------------
Confidence 34556777889999999999999997765443 2 468888999999999999999999876531
Q ss_pred HHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhC
Q 012577 136 ILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSE----G-IEPDSSTQAILAKHYVSG 210 (460)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g-~~~~~~~~~~l~~~~~~~ 210 (460)
...++ .+....++..+...|...|++++|.+.+++..+. + .+....++..+...|...
T Consensus 117 ---~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 117 ---KSMND--------------RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp ---HHTTC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ---HHccC--------------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence 00000 0111234555556666666666666666655432 1 011234556666666666
Q ss_pred CC-----------------hHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc----CCC-
Q 012577 211 GR-----------------KEKAEAMLKEMEGD----NL-KEHRWTCRLLLPLYAELGKADQVARIWKLCES----NPW- 263 (460)
Q Consensus 211 ~~-----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~- 263 (460)
|+ +++|+..+++..+. +. .....++..+...|...|++++|...+++... .++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 66 66666666655431 11 11123566666777777777777777765433 112
Q ss_pred ---HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccC-----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C-
Q 012577 264 ---LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKK-----LSTKHYTALLKVYADHKMLSKGKDLVKQMAESG----C- 330 (460)
Q Consensus 264 ---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~- 330 (460)
...+..+...|...|++++|...+++..+.... ....++..+...|...|++++|...+++..+.. .
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 225677788888888888888888877653221 124667788888999999999999988876531 0
Q ss_pred CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhC
Q 012577 331 HIGPLAWDALVKLHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 331 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
.....++..+...|...|++++|.+.++++.+..
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 1123577788889999999999999999887643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-12 Score=118.80 Aligned_cols=303 Identities=12% Similarity=-0.017 Sum_probs=143.4
Q ss_pred CHHHHHHHHHH---HHhcccchhHHHHHHHHHhcccC-CCChh--hhHHHHHH--HHHhhCHHHHH-----------HHH
Q 012577 23 SRAEIALAMAN---LRTRRMYGKALQLSEWLETNKKL-DFIER--DYASCLDL--IAKLRGLQKAE-----------SYI 83 (460)
Q Consensus 23 ~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~-~~~~~--~~~~l~~~--~~~~~~~~~a~-----------~~~ 83 (460)
+++.+...+.. ..+.+++++|..+++.+...-.. ..+.. .|-.++.. ..-.+.++.+. +.+
T Consensus 8 ~~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~ 87 (383)
T 3ulq_A 8 SSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLL 87 (383)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHH
Confidence 33444444443 34678999999999888664311 12222 22223222 11223344444 555
Q ss_pred HhcccCCCchhH------HHHHHHHHHcCCCHHHHHHHHHHHHhCC----CCC-ChhhhHHHHHHHHhcCchHHHHHHHH
Q 012577 84 QKIPESFRGEVV------YRTLLANCVAGNNVKKAEEVFNRMKDKG----FPV-TSFACNQLLILYKRLDKKKVADVLLL 152 (460)
Q Consensus 84 ~~~~~~~~~~~~------~~~ll~~~~~~~~~~~a~~~~~~m~~~g----~~~-~~~~~~~ll~~~~~~~~~~a~~~~~~ 152 (460)
+.+.....+... +......+...|++++|...|++..+.- -++ ...++..+...|...|
T Consensus 88 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~---------- 157 (383)
T 3ulq_A 88 LEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK---------- 157 (383)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC----------
Confidence 555432122111 2224556778889999999888887641 011 1233444444444444
Q ss_pred HHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhC--CC----CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 012577 153 MEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSE--GI----EPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD 226 (460)
Q Consensus 153 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (460)
++++|...+++..+. .. +....+++.+...|...|++++|+..|++..+.
T Consensus 158 ------------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 213 (383)
T 3ulq_A 158 ------------------------QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM 213 (383)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------------------CHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 444444444443321 00 001233444444444444444444444444321
Q ss_pred CCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHhcc------C-C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 012577 227 NLK-EH----RWTCRLLLPLYAELGKADQVARIWKLCES------N-P-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT 293 (460)
Q Consensus 227 ~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 293 (460)
... ++ ..++..+..+|...|++++|...+++... . | ...++..+...|.+.|++++|...+++..+.
T Consensus 214 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 293 (383)
T 3ulq_A 214 AEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 000 00 12344444445555555555444443322 1 1 1224455555555555555555555554432
Q ss_pred c----cCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 294 W----KKLSTKHYTALLKVYADHKM---LSKGKDLVKQMAESGCHI-GPLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 294 ~----~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
. .+.....+..+...+...|+ +++|..+++.. +..| ....+..+...|...|++++|.+.+++..+
T Consensus 294 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 294 SQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 11111224455556666666 45555555444 2112 234555666667777777777777766654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-11 Score=107.88 Aligned_cols=186 Identities=10% Similarity=-0.009 Sum_probs=132.8
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHH
Q 012577 179 TGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRW-TCRLLLPLYAELGKADQVARIWKL 257 (460)
Q Consensus 179 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~ 257 (460)
++|..+|++..+.-.+.+...|..++..+.+.|++++|..+|+++.+.... +.. +|..++..+.+.|++++|..+|++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 777788877776311335567777777777778888888888877764322 222 677777777777888888888877
Q ss_pred hcc-CC-CHHHHHHHHHHH-HccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC-
Q 012577 258 CES-NP-WLDVCMAAIEAW-GKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESG-CHI- 332 (460)
Q Consensus 258 ~~~-~~-~~~~~~~li~~~-~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~- 332 (460)
... .| +...|....... ...|++++|..+|+...+..+. +...|..++..+.+.|++++|..+|+...... ++|
T Consensus 160 a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 160 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence 655 23 333444333332 2368888999999888876443 67788888888888899999999999988863 344
Q ss_pred -CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCC
Q 012577 333 -GPLAWDALVKLHVEGGEVEKADSILLKAQQQNKF 366 (460)
Q Consensus 333 -~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 366 (460)
....|..++..+.+.|+.+.|..+++++.+..+-
T Consensus 239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 239 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 4667888888888889999999999888776543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-12 Score=115.87 Aligned_cols=268 Identities=12% Similarity=-0.030 Sum_probs=201.6
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHhC----CCC-CCHH
Q 012577 163 FSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD----SSTQAILAKHYVSGGRKEKAEAMLKEMEGD----NLK-EHRW 233 (460)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~ 233 (460)
..+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++..+. +.. ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 345556778889999999999999998764 233 467888999999999999999999887543 111 1245
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcc----CCC----HHHHHHHHHHHHccCC--------------------HHHHHH
Q 012577 234 TCRLLLPLYAELGKADQVARIWKLCES----NPW----LDVCMAAIEAWGKLNK--------------------VEEAEA 285 (460)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~~li~~~~~~~~--------------------~~~a~~ 285 (460)
++..+...+...|++++|...++.... .++ ..++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 778889999999999999999887543 233 3367888889999999 999999
Q ss_pred HHHHHHhc----c-cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCChhhHHH
Q 012577 286 VFKRMSKT----W-KKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGC-HIG----PLAWDALVKLHVEGGEVEKADS 355 (460)
Q Consensus 286 ~~~~m~~~----~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~~a~~ 355 (460)
.+++.... + ......++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99876542 1 111235678888999999999999999998865310 111 3478888899999999999999
Q ss_pred HHHHHHHhCCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CccHHHHHHHHHHHHhcCC--chhh
Q 012577 356 ILLKAQQQNKFKPM----FSSYMLIMDQYAKRGDIHSTEKIFHRMRQV----GY-VARFKQFQTLVQAYINAKT--PAYG 424 (460)
Q Consensus 356 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~~~l~~~~~~~g~--~~~~ 424 (460)
.+++..+...-.++ ..++..+...+...|++++|...+++..+. +- .....++..+...|...|+ .+..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99988754321122 456788889999999999999999988753 11 1124578889999999999 4665
Q ss_pred hHHHHHh
Q 012577 425 IRDRMRA 431 (460)
Q Consensus 425 ~~~~m~~ 431 (460)
.+++...
T Consensus 325 ~~~~a~~ 331 (338)
T 3ro2_A 325 FAEKHLE 331 (338)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-12 Score=121.81 Aligned_cols=195 Identities=10% Similarity=-0.056 Sum_probs=110.0
Q ss_pred CHHHHHHHHHHHHhCCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCCHHHHHHHHHH
Q 012577 196 DSSTQAILAKHYVSGGRK-EKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NPWLDVCMAAIEA 273 (460)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~ 273 (460)
+...+..+..++...|++ ++|+..|++..+.... +...|..+..+|...|++++|...|+.... .|+...+..+...
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~ 179 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMV 179 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 344444444444444444 4444444444433211 233444444444444444444444443332 3333444444555
Q ss_pred HHcc---------CCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCC---CC
Q 012577 274 WGKL---------NKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADH--------KMLSKGKDLVKQMAESGCH---IG 333 (460)
Q Consensus 274 ~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~~a~~~~~~~~~~~~~---~~ 333 (460)
+... |++++|...|++..+..+. +...|..+..+|... |++++|...|+...+.. + .+
T Consensus 180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 257 (474)
T 4abn_A 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSN 257 (474)
T ss_dssp HTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGC
T ss_pred HHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccC
Confidence 5555 6666666666666665433 556666677777666 77777777777777653 2 36
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012577 334 PLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHR 395 (460)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 395 (460)
...|..+..+|...|++++|.+.|+++.+..+ .+...+..+..++...|++++|.+.+.+
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALDP--AWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 67777777777777777777777777766543 2334566666777777777777665443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.50 E-value=6.9e-12 Score=101.78 Aligned_cols=129 Identities=15% Similarity=0.061 Sum_probs=56.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHV 345 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (460)
.+..+...|.+.|++++|...+......... +...+..+...+...++++.+...+....+.. +.+...+..+...|.
T Consensus 41 ~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~ 118 (184)
T 3vtx_A 41 TLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYD 118 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 3333344444444444444444444333222 33334444444444444444444444444431 233444444444444
Q ss_pred cCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 346 EGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
+.|++++|++.|+++.+..+ .+...|..+..+|.+.|++++|++.|++..+
T Consensus 119 ~~g~~~~A~~~~~~~l~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 119 SMGEHDKAIEAYEKTISIKP--GFIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCCchhHHHHHHHHHHhcc--hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 45555555555544444332 1233444444455555555555555554444
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.50 E-value=7.4e-12 Score=101.59 Aligned_cols=166 Identities=17% Similarity=0.050 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012577 161 TQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLP 240 (460)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 240 (460)
+...|..+...|.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...+......... +...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~- 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG- 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH-
Confidence 34455555666666666666666666655443 334555555555556666666666555555443322 233333444
Q ss_pred HHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHH
Q 012577 241 LYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKD 320 (460)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 320 (460)
..+...++++.|...+....+..+. +...+..+...|.+.|++++|.+
T Consensus 81 -------------------------------~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~ 128 (184)
T 3vtx_A 81 -------------------------------SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIE 128 (184)
T ss_dssp -------------------------------HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------------------------------HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHH
Confidence 4444445555555555544443222 44455555555555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 321 LVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
.|++..+.. +.+..++..+..+|.+.|++++|.+.|+++.+
T Consensus 129 ~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 129 AYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 555555542 33455555555555555555555555555544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=4e-13 Score=119.00 Aligned_cols=237 Identities=12% Similarity=0.072 Sum_probs=161.2
Q ss_pred CHHHHHHHHHHHhhcCChhHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC------C
Q 012577 161 TQFSYKILIDIKGQSNDLTGMDQVVEAMKSE-------GIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD------N 227 (460)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 227 (460)
+..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...++++.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456777888888888998888888887762 22334567788888888889999888888887653 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccC---------C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc---
Q 012577 228 -LKEHRWTCRLLLPLYAELGKADQVARIWKLCESN---------P-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT--- 293 (460)
Q Consensus 228 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 293 (460)
.+....++..+...|...|++++|...++..... | ....+..+...+...|++++|.+.++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223456778888888889988888888765431 2 2335778888899999999999999988764
Q ss_pred ---ccCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------CCC-------CHHHHHHHHHHHHcCCChhhHHH
Q 012577 294 ---WKKL-STKHYTALLKVYADHKMLSKGKDLVKQMAESG-------CHI-------GPLAWDALVKLHVEGGEVEKADS 355 (460)
Q Consensus 294 ---~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------~~~-------~~~~~~~li~~~~~~~~~~~a~~ 355 (460)
+..| ...++..+...|...|++++|...++++.+.. ..+ ....+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1122 34567888899999999999999999887631 111 11223334444555677777778
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 356 ILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
.+....... ..+..++..+..+|.+.|++++|.++|++..+.
T Consensus 266 ~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 266 WYKACKVDS--PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --------C--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhcCCCC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 877765432 234567888999999999999999999988764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.5e-12 Score=119.81 Aligned_cols=211 Identities=10% Similarity=-0.046 Sum_probs=175.4
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDL-TGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKE 222 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (460)
+++...++...... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|...|++
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555544432 45778888899999999999 99999999998774 45688999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHcc--------CCHHHH
Q 012577 223 MEGDNLKEHRWTCRLLLPLYAEL---------GKADQVARIWKLCES-NP-WLDVCMAAIEAWGKL--------NKVEEA 283 (460)
Q Consensus 223 ~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~--------~~~~~a 283 (460)
..+.. |+...+..+..+|... |++++|...+++... .| +...|..+..+|... |++++|
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 98865 5578888999999999 999999999998765 44 567888999999888 999999
Q ss_pred HHHHHHHHhcccC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHH
Q 012577 284 EAVFKRMSKTWKK--LSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLK 359 (460)
Q Consensus 284 ~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 359 (460)
...|++..+..+. -+...|..+...|...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+.+
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999986431 378899999999999999999999999998874 45677888888999888988888876543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-09 Score=103.44 Aligned_cols=404 Identities=8% Similarity=-0.006 Sum_probs=270.2
Q ss_pred hHHHHHHHHHHhCCCCCHHHHHHHHHHHHhccc---chhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCH-------
Q 012577 7 SIHSTLTKYAEEGNDLSRAEIALAMANLRTRRM---YGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGL------- 76 (460)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------- 76 (460)
.+..+++++... .|.+.......+..-.+.++ ++.+..+|+........+|+...+...+....+.++.
T Consensus 84 ~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~ 162 (679)
T 4e6h_A 84 QVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEA 162 (679)
T ss_dssp HHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHH
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchh
Confidence 345566666653 67788888888888888888 9999999999887643347877888877776665553
Q ss_pred -HHHHHHHHhccc-----CCCchhHHHHHHHHHH---------cCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhc
Q 012577 77 -QKAESYIQKIPE-----SFRGEVVYRTLLANCV---------AGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRL 141 (460)
Q Consensus 77 -~~a~~~~~~~~~-----~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 141 (460)
+...++|+.... ...+...|...+.... .+++++.+..+|++.+......-..+|......-...
T Consensus 163 r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~ 242 (679)
T 4e6h_A 163 RNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDV 242 (679)
T ss_dssp HHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc
Confidence 344577776332 2234567888776543 2345788999999988631111123332222111111
Q ss_pred Cc--------------hHHHHHHHHHHHc--CC----C-----------C--C------HHHHHHHHHHHhhcC------
Q 012577 142 DK--------------KKVADVLLLMEKE--NV----K-----------L--T------QFSYKILIDIKGQSN------ 176 (460)
Q Consensus 142 ~~--------------~~a~~~~~~~~~~--~~----~-----------~--~------~~~~~~li~~~~~~~------ 176 (460)
+. ..|...+.++... ++ + | + ...|...+..--..+
T Consensus 243 ~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~ 322 (679)
T 4e6h_A 243 NQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDD 322 (679)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHH
T ss_pred CcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccch
Confidence 11 2233334333211 11 1 1 0 134555554433322
Q ss_pred -ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 012577 177 -DLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAE-AMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARI 254 (460)
Q Consensus 177 -~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 254 (460)
..+.+..+|++....- +-+...|-..+..+...|+.++|. ++|+..... ++.+...|...+......|+++.|..+
T Consensus 323 ~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~i 400 (679)
T 4e6h_A 323 LHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETT 400 (679)
T ss_dssp HHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 1234567788877653 557888988888888899999997 999999864 344666677788888999999999999
Q ss_pred HHHhccC------------CC------------HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHH
Q 012577 255 WKLCESN------------PW------------LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYA 310 (460)
Q Consensus 255 ~~~~~~~------------~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 310 (460)
|+.+... |. ...|...+....+.|..+.|..+|....+....+....|...+..-.
T Consensus 401 yek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~ 480 (679)
T 4e6h_A 401 ILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY 480 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 9876542 32 23577778887888999999999999987622223444544444334
Q ss_pred hc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCC-CcCHHHHHHHHHHHHhcCCHHH
Q 012577 311 DH-KMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKF-KPMFSSYMLIMDQYAKRGDIHS 388 (460)
Q Consensus 311 ~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 388 (460)
+. ++.+.|..+|+...+. ++-+...+...+......|+.+.|..+|+.+....+- .-....|...+..-.+.|+.+.
T Consensus 481 ~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 481 HISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp TTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred HhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 44 4589999999999887 5667888888888888899999999999998765421 1134678888888899999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 012577 389 TEKIFHRMRQVGYVARFKQFQTLVQAYI 416 (460)
Q Consensus 389 a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 416 (460)
+.++.+++.+.- |+......+++-|.
T Consensus 560 ~~~v~~R~~~~~--P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 560 VRTLEKRFFEKF--PEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHHHHHHHHS--TTCCHHHHHHHHTC
T ss_pred HHHHHHHHHHhC--CCCcHHHHHHHHhc
Confidence 999999999863 44445555555544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-10 Score=105.53 Aligned_cols=228 Identities=8% Similarity=-0.044 Sum_probs=170.8
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHhC----CC-CC-CHHHH
Q 012577 167 ILIDIKGQSNDLTGMDQVVEAMKSEGI-EPD----SSTQAILAKHYVSGGRKEKAEAMLKEMEGD----NL-KE-HRWTC 235 (460)
Q Consensus 167 ~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~~ 235 (460)
.....+...|++++|...|++..+... .++ ..++..+...|...|++++|...+++..+. +- .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345567789999999999999875411 122 467888889999999999999999887652 11 11 24567
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcc----CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHh-----cccCcCHHHH
Q 012577 236 RLLLPLYAELGKADQVARIWKLCES----NPW----LDVCMAAIEAWGKLNKVEEAEAVFKRMSK-----TWKKLSTKHY 302 (460)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~ 302 (460)
..+..+|...|++++|...++.... .++ ..++..+...|...|++++|.+.+++..+ ..+. ...++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHH
Confidence 7888999999999999998876543 222 23678889999999999999999998887 4333 36788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHcCCC---hhhHHHHHHHHHHhCCCCcCHHHHHH
Q 012577 303 TALLKVYADHKMLSKGKDLVKQMAESGC----HIGPLAWDALVKLHVEGGE---VEKADSILLKAQQQNKFKPMFSSYML 375 (460)
Q Consensus 303 ~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~ 375 (460)
..+...|.+.|++++|...+++..+..- +.....+..+...|...++ +.+|..++++. .........+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 8899999999999999999999887421 2223456666667777788 77777777652 112222346677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 012577 376 IMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 376 l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
+...|.+.|++++|...|++..+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88999999999999999998875
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-12 Score=113.39 Aligned_cols=96 Identities=16% Similarity=0.072 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhC------CCC
Q 012577 163 FSYKILIDIKGQSNDLTGMDQVVEAMKSE------GIEP-DSSTQAILAKHYVSGGRKEKAEAMLKEMEGD------NLK 229 (460)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~ 229 (460)
.++..+...+...|++++|.+.++++.+. +-.| ...++..+...+...|++++|+..++++.+. +..
T Consensus 112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 191 (311)
T 3nf1_A 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD 191 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34555666666666666666666665532 1111 2344555666666666666666666655442 111
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 012577 230 E-HRWTCRLLLPLYAELGKADQVARIWKLC 258 (460)
Q Consensus 230 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 258 (460)
| ...++..+..+|...|++++|...++..
T Consensus 192 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 192 PNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 1233444555555555555555555443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-10 Score=103.78 Aligned_cols=307 Identities=9% Similarity=-0.040 Sum_probs=144.4
Q ss_pred HHHHHHHHHHH---HhcccchhHHHHHHHHHhccc-CCCChh--hhHHHHHH--HHHhhCHHHHH---------HHHHhc
Q 012577 24 RAEIALAMANL---RTRRMYGKALQLSEWLETNKK-LDFIER--DYASCLDL--IAKLRGLQKAE---------SYIQKI 86 (460)
Q Consensus 24 ~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~-~~~~~~--~~~~l~~~--~~~~~~~~~a~---------~~~~~~ 86 (460)
.+.+..++... ...+++++|.++++.+..... ...+.. .|-.++.. ..-.+.+..+. ..++.+
T Consensus 9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i 88 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETI 88 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHH
Confidence 33444444432 577899999999988765421 112222 22222222 11112222222 444444
Q ss_pred ccCC-C--chh---HHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCC
Q 012577 87 PESF-R--GEV---VYRTLLANCVAGNNVKKAEEVFNRMKDKGF-PVTSFACNQLLILYKRLDKKKVADVLLLMEKENVK 159 (460)
Q Consensus 87 ~~~~-~--~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~ 159 (460)
.... + +.. .|......+...|++++|...|++..+... .++..
T Consensus 89 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------------ 138 (378)
T 3q15_A 89 ETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDI------------------------------ 138 (378)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHH------------------------------
T ss_pred hccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChH------------------------------
Confidence 3210 1 111 123344556778888888888888765411 01100
Q ss_pred CCHHHHHHHHHHHhhcCChhHHHHHHHHHHhC----CC-CC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhC----CCC
Q 012577 160 LTQFSYKILIDIKGQSNDLTGMDQVVEAMKSE----GI-EP-DSSTQAILAKHYVSGGRKEKAEAMLKEMEGD----NLK 229 (460)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~ 229 (460)
....++..+...|...|+++.|...+++..+. +- .+ ...+++.+..+|...|++++|...|++..+. +-.
T Consensus 139 ~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 218 (378)
T 3q15_A 139 EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND 218 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH
Confidence 01123444444555555555555555444321 00 00 1234445555555555555555555544331 110
Q ss_pred -CCHHHHHHHHHHHHhcCChhHHHHHHHHhcc------CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhccc----Cc
Q 012577 230 -EHRWTCRLLLPLYAELGKADQVARIWKLCES------NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWK----KL 297 (460)
Q Consensus 230 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~p 297 (460)
....++..+..+|...|++++|...+++... .| ...++..+...+.+.|++++|...+++..+... +.
T Consensus 219 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 298 (378)
T 3q15_A 219 RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF 298 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 1123444555555555555555555544332 11 223455556666666666666666665554311 11
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 298 STKHYTALLKVYADHKM---LSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
....+..+...+...++ +.+|..+++... ..+.....+..+...|...|++++|.+.|+++.+
T Consensus 299 ~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 299 YKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12234444455555555 555555554411 1111234455666667777777777777766654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-10 Score=92.09 Aligned_cols=161 Identities=16% Similarity=0.025 Sum_probs=98.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcc-C-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhc
Q 012577 235 CRLLLPLYAELGKADQVARIWKLCES-N-PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADH 312 (460)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 312 (460)
+..+...+...|++++|...++.+.. . .+...+..+...+...|++++|...++.+.+... .+...+..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHh
Confidence 33444445555555555555554433 1 2344555556666666666666666666655432 2455666666667777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 012577 313 KMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKI 392 (460)
Q Consensus 313 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 392 (460)
|++++|...++.+.+.. +.+...+..+...+...|++++|.++++++.+..+ .+...+..+...+...|++++|.+.
T Consensus 90 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP--NEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777766652 44566666677777777777777777777665542 3345666677777777777777777
Q ss_pred HHHHHHc
Q 012577 393 FHRMRQV 399 (460)
Q Consensus 393 ~~~m~~~ 399 (460)
++++.+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 7776653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-10 Score=93.97 Aligned_cols=163 Identities=13% Similarity=0.048 Sum_probs=94.6
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE 244 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (460)
|..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------- 72 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA----------------- 72 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------
Confidence 4444455555555555555555544332 2344445555555555555555555555544432
Q ss_pred cCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012577 245 LGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQ 324 (460)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 324 (460)
..+...+..+...+...|++++|.+.++.+.+... .+...+..+...+...|++++|...++.
T Consensus 73 ----------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 73 ----------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 12333445555556666666666666666655432 2556666667777777777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Q 012577 325 MAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 325 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (460)
+.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 136 ~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 136 ALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 76653 445667777777777777777777777776554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-09 Score=98.49 Aligned_cols=198 Identities=14% Similarity=0.034 Sum_probs=100.8
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC----CHH
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSE----GIE--P-DSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKE----HRW 233 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~ 233 (460)
+..+...+...|++++|.+.+++..+. +.. | ...++..+...+...|++++|...+++........ ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 445566667777777777777665432 211 2 23345556666677777777777777665432111 123
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcc---CC-CHHHHH-----HHHHHHHccCCHHHHHHHHHHHHhcccCc---CHHH
Q 012577 234 TCRLLLPLYAELGKADQVARIWKLCES---NP-WLDVCM-----AAIEAWGKLNKVEEAEAVFKRMSKTWKKL---STKH 301 (460)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~-~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~ 301 (460)
++..+...+...|++++|...++.... .+ ....+. ..+..+...|++++|...++........+ ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 455555666666666666666654332 11 111111 12233455666666666666555432211 1123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 302 YTALLKVYADHKMLSKGKDLVKQMAES----GCHIGP-LAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 302 ~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
+..+...+...|++++|...++..... |.+++. ..+..+..++...|+.++|...+++...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444555566666666666666555432 111111 2344444555555666666666555543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-10 Score=113.20 Aligned_cols=164 Identities=13% Similarity=0.020 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012577 163 FSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLY 242 (460)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 242 (460)
..|+.|...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|+..|++..+...
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-------------- 74 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-------------- 74 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------
Confidence 345555555555555555555555554432 22344555555555555555555555555444321
Q ss_pred HhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012577 243 AELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLV 322 (460)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 322 (460)
.+...|..+...|...|++++|++.|++..+.... +...|+.+...|...|++++|.+.|
T Consensus 75 -------------------~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~ 134 (723)
T 4gyw_A 75 -------------------TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASY 134 (723)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 12334555555555555666666666555554332 4555666666666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 323 KQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 323 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
++..+.. +-+...+..+...+...|++++|.+.++++.+
T Consensus 135 ~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 135 RTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHhC-CCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 6666542 33455666666666666666666666665543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-10 Score=114.21 Aligned_cols=163 Identities=7% Similarity=-0.033 Sum_probs=133.1
Q ss_pred ChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012577 127 TSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAK 205 (460)
Q Consensus 127 ~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~ 205 (460)
+..+++.+..++.+.|+ ++|...|++..+.. +-+..+|..+..+|.+.|++++|++.|++..+.. +-+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 56789999999999999 99999999998874 4567899999999999999999999999998875 456889999999
Q ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHH
Q 012577 206 HYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEA 283 (460)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a 283 (460)
++...|++++|++.|++..+.... +...|..+..+|...|++++|...|++... .| +...+..+...+...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 999999999999999999876533 566777777788888888887777776554 44 445667777777777777777
Q ss_pred HHHHHHHHh
Q 012577 284 EAVFKRMSK 292 (460)
Q Consensus 284 ~~~~~~m~~ 292 (460)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.29 E-value=3e-09 Score=96.71 Aligned_cols=290 Identities=9% Similarity=0.057 Sum_probs=183.8
Q ss_pred HHHhcCc-hHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhhcCChhHHHHHHHHHHhCCC-CCCH----HHHHHHHHH
Q 012577 137 LYKRLDK-KKVADVLLLMEKENVKLTQF----SYKILIDIKGQSNDLTGMDQVVEAMKSEGI-EPDS----STQAILAKH 206 (460)
Q Consensus 137 ~~~~~~~-~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~----~~~~~l~~~ 206 (460)
.+...|+ ++|...+++.....-..+.. +++.+...+...|++++|.+.+++.....- .++. .++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 4555666 88888888876653122222 456667778888899999888888764310 1222 335667777
Q ss_pred HHhCCChHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC------CHHHHHHHHH
Q 012577 207 YVSGGRKEKAEAMLKEMEGD----NLK--E-HRWTCRLLLPLYAELGKADQVARIWKLCES-NP------WLDVCMAAIE 272 (460)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~------~~~~~~~li~ 272 (460)
+...|++++|...+++..+. +.. | ....+..+...+...|++++|...++.... .+ ....+..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 88889999988888877642 221 2 234556677788888898888888876543 11 1235677778
Q ss_pred HHHccCCHHHHHHHHHHHHhcccCcCH-HHHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHH
Q 012577 273 AWGKLNKVEEAEAVFKRMSKTWKKLST-KHYT-----ALLKVYADHKMLSKGKDLVKQMAESGCHI---GPLAWDALVKL 343 (460)
Q Consensus 273 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~ 343 (460)
.+...|++++|...+++.......++. ..+. ..+..+...|++++|...++........+ ....+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 888888888888888887654222211 1222 23344678888888888888776543111 12345667778
Q ss_pred HHcCCChhhHHHHHHHHHHhC---CCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 012577 344 HVEGGEVEKADSILLKAQQQN---KFKPMF-SSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAK 419 (460)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~---~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 419 (460)
+...|++++|...++++.... +..++. ..+..+..++...|+.++|...+++..... .+ ...+..+...|
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-~~-----~g~~~~~~~~g 336 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA-NR-----TGFISHFVIEG 336 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HH-----HCCCHHHHTTH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh-cc-----ccHHHHHHHcc
Confidence 888888888888888775432 111222 255566777888888888888888887642 11 11234455555
Q ss_pred CchhhhHHHHHhC
Q 012577 420 TPAYGIRDRMRAD 432 (460)
Q Consensus 420 ~~~~~~~~~m~~~ 432 (460)
.....+++.....
T Consensus 337 ~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 337 EAMAQQLRQLIQL 349 (373)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 5455555555444
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.1e-10 Score=94.73 Aligned_cols=98 Identities=7% Similarity=-0.161 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012577 161 TQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLP 240 (460)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 240 (460)
|+..+......+...|++++|.+.|++..+...+++...+..+..++...|++++|+..|++..+.... +..++..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 445556666666666666666666666665542255555555666666666666666666666654322 3344555555
Q ss_pred HHHhcCChhHHHHHHHHhc
Q 012577 241 LYAELGKADQVARIWKLCE 259 (460)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~ 259 (460)
+|...|++++|...++...
T Consensus 85 ~~~~~~~~~~A~~~~~~al 103 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGI 103 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHH
Confidence 5555555555555555443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=8.3e-10 Score=92.82 Aligned_cols=206 Identities=11% Similarity=0.001 Sum_probs=154.3
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHH
Q 012577 194 EPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAI 271 (460)
Q Consensus 194 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li 271 (460)
+.|+..+......+...|++++|+..|++..+....++...+..+..++...|++++|...++.... .| +...+..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 3567888899999999999999999999999876646777887899999999999999999988765 55 455788899
Q ss_pred HHHHccCCHHHHHHHHHHHHhcccCcCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 012577 272 EAWGKLNKVEEAEAVFKRMSKTWKKLST-------KHYTALLKVYADHKMLSKGKDLVKQMAESGCHI--GPLAWDALVK 342 (460)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~ 342 (460)
..|...|++++|...+++..+..+. +. ..|..+...+...|++++|...++...+.. +. +...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 9999999999999999999886443 44 457778888889999999999999998753 22 3567777777
Q ss_pred HHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 012577 343 LHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTL 411 (460)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 411 (460)
.|... +..+++++.... ..+...|.... ....+.+++|...+++..+.. |.+..+...+
T Consensus 162 ~~~~~-----~~~~~~~a~~~~--~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l 220 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLA--SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQ 220 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGT--TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHhcc--cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 77543 444555554432 22333444333 334567899999999999875 4444444444
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-10 Score=101.58 Aligned_cols=226 Identities=12% Similarity=0.061 Sum_probs=135.5
Q ss_pred hcCChhHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC------CC-CCCHHHHHHHH
Q 012577 174 QSNDLTGMDQVVEAMKSE-------GIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD------NL-KEHRWTCRLLL 239 (460)
Q Consensus 174 ~~~~~~~a~~~~~~m~~~-------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~ 239 (460)
..|++++|+..|++..+. ..+....++..+...|...|++++|+..++++.+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 455666666665554431 11223456666777777777777777777766543 11 12234566677
Q ss_pred HHHHhcCChhHHHHHHHHhccC---------C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc------ccCc-CHHHH
Q 012577 240 PLYAELGKADQVARIWKLCESN---------P-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT------WKKL-STKHY 302 (460)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~---------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~ 302 (460)
.+|...|++++|...+++.... | ....+..+...|...|++++|...++++.+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 7777777777777776654321 2 2335677788888888888888888877764 1122 34677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCC-CHHHHHHHHHHHHcCCChhhHHHHHHHHH--HhCC-C-CcCH
Q 012577 303 TALLKVYADHKMLSKGKDLVKQMAES-------GCHI-GPLAWDALVKLHVEGGEVEKADSILLKAQ--QQNK-F-KPMF 370 (460)
Q Consensus 303 ~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~-~-~~~~ 370 (460)
..+...|...|++++|...++++.+. ...+ ....+..+...+...+....+..+..... +..+ . ....
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 88888899999999999998888753 1112 22334444444444333333332211110 1111 1 2234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 371 SSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
.++..+...|.+.|++++|..++++..+.
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57788899999999999999999988753
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.22 E-value=2.3e-08 Score=85.97 Aligned_cols=252 Identities=8% Similarity=-0.022 Sum_probs=163.6
Q ss_pred HHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 012577 169 IDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKA 248 (460)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 248 (460)
++-..-.|++..++.-...+.. ......-.-+.++|...|+++.. ....|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 4445557888777763332221 22233334455777777776631 12234433444333333 222
Q ss_pred hHHHHHHHHhcc--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccc-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012577 249 DQVARIWKLCES--NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWK-KLSTKHYTALLKVYADHKMLSKGKDLVKQM 325 (460)
Q Consensus 249 ~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 325 (460)
+...+++... .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5666776554 24555566777888889999999999988876654 225677788889999999999999999999
Q ss_pred HHcCCCC-----CHHHHHHHHHHHH----cCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012577 326 AESGCHI-----GPLAWDALVKLHV----EGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRM 396 (460)
Q Consensus 326 ~~~~~~~-----~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 396 (460)
.+. .| +..+...+..++. ..+++.+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF---PTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---CCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 775 45 3555555655522 2348999999999986554 44333344555888999999999999876
Q ss_pred HHcC---------CCccHHHHHHHHHHHHhcCCchhhhHHHHHhCCCCcCHHHHHHH
Q 012577 397 RQVG---------YVARFKQFQTLVQAYINAKTPAYGIRDRMRADNVFPNKALAAQV 444 (460)
Q Consensus 397 ~~~~---------~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~l 444 (460)
.+.. -+.|+.++..+|......|+.+..++.++++. .|+.....-+
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk~a~~l~~qL~~~--~P~hp~i~d~ 292 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGLDTEDLTNQLVKL--DHEHAFIKHH 292 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTCTTHHHHHHHHHT--TCCCHHHHHH
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhChHHHHHHHHHHHh--CCCChHHHHH
Confidence 6531 14467777677767777788888888888874 4665544433
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.21 E-value=4.2e-10 Score=97.80 Aligned_cols=224 Identities=12% Similarity=0.066 Sum_probs=151.8
Q ss_pred HHhCCChHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccC---------C-CHHHHHH
Q 012577 207 YVSGGRKEKAEAMLKEMEG-------DNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESN---------P-WLDVCMA 269 (460)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~-~~~~~~~ 269 (460)
....|++++|+..+++..+ .+.+....++..+...|...|++++|...++..... | ...++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 3456777777777776654 222234567888999999999999999999875431 2 2346888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcc-------cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHH
Q 012577 270 AIEAWGKLNKVEEAEAVFKRMSKTW-------KKLSTKHYTALLKVYADHKMLSKGKDLVKQMAES------GCHI-GPL 335 (460)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~~-------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~ 335 (460)
+...|...|++++|...+++..+.. .+....++..+...|...|++++|...++++.+. +..| ...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999999999887641 1224567888999999999999999999998775 1122 356
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhC------CCCcC-HHHHHHHHHHHHhcCCHHHHHH------HHHHHHHcCCC
Q 012577 336 AWDALVKLHVEGGEVEKADSILLKAQQQN------KFKPM-FSSYMLIMDQYAKRGDIHSTEK------IFHRMRQVGYV 402 (460)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~-~~~~~~l~~~~~~~g~~~~a~~------~~~~m~~~~~~ 402 (460)
++..+...|...|++++|.++++++.+.. ...+. ...|..+...+...+....+.. .++.... ..+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCH
Confidence 78889999999999999999999987641 11122 2234444444444333333222 2221111 113
Q ss_pred ccHHHHHHHHHHHHhcCC--chhhhHHHHHh
Q 012577 403 ARFKQFQTLVQAYINAKT--PAYGIRDRMRA 431 (460)
Q Consensus 403 ~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~ 431 (460)
....++..+...|...|+ .+..+++...+
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678899999999999 56666655443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-09 Score=96.06 Aligned_cols=157 Identities=9% Similarity=-0.037 Sum_probs=73.6
Q ss_pred HHHhCCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhcc----CCC----HHHHHHHHH
Q 012577 206 HYVSGGRKEKAEAMLKEMEGD----NLKEH-RWTCRLLLPLYAELGKADQVARIWKLCES----NPW----LDVCMAAIE 272 (460)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~~li~ 272 (460)
.|...|++++|...|++..+. |-.++ ..+|+.+..+|...|++++|...++.... .++ ..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555544331 11111 23444444445555555555444443221 111 123445555
Q ss_pred HHHcc-CCHHHHHHHHHHHHhcccCc-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHH
Q 012577 273 AWGKL-NKVEEAEAVFKRMSKTWKKL-S----TKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGP------LAWDAL 340 (460)
Q Consensus 273 ~~~~~-~~~~~a~~~~~~m~~~~~~p-~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l 340 (460)
.|... |++++|+..|++..+..... + ..++..+...+.+.|++++|...|+...+....... ..+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 55553 66666666665555421110 0 234555556666666666666666665553211111 134445
Q ss_pred HHHHHcCCChhhHHHHHHHHHH
Q 012577 341 VKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 341 i~~~~~~~~~~~a~~~~~~~~~ 362 (460)
..++...|++++|...|++..+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5555556666666666655543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.17 E-value=3.7e-08 Score=84.64 Aligned_cols=179 Identities=10% Similarity=0.068 Sum_probs=96.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhc
Q 012577 181 MDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLK-EHRWTCRLLLPLYAELGKADQVARIWKLCE 259 (460)
Q Consensus 181 a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 259 (460)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..+.. -+...+..++..+.+.|+.+.|.+.++.+.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555555443 344444455555666666666666666665544431 133444555566666666666666666554
Q ss_pred c-CC-----CHHHHHHHHHHHH----ccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 012577 260 S-NP-----WLDVCMAAIEAWG----KLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAES- 328 (460)
Q Consensus 260 ~-~~-----~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~- 328 (460)
. .| +..+...++.++. ..+++.+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4 33 1233333333321 2236777777777765542 34333334444677777777777777755442
Q ss_pred ----C----CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhC
Q 012577 329 ----G----CHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 329 ----~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
. -+-|+.++..+|......|+ +|.+++.++.+..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 0 03355666455555555565 6677777776543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=4.3e-08 Score=85.65 Aligned_cols=215 Identities=11% Similarity=0.075 Sum_probs=152.7
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC--C-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 012577 179 TGMDQVVEAMKSEGIEPDSSTQAILAKHYVSG--G-RKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIW 255 (460)
Q Consensus 179 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~--~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 255 (460)
.+|.+++.+..+.- +++...| .+.+. + ++++|...|++. ...|...|++++|...|
T Consensus 2 ~~a~~~~~~a~k~~-~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 60 (292)
T 1qqe_A 2 SDPVELLKRAEKKG-VPSSGFM-----KLFSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSF 60 (292)
T ss_dssp CCHHHHHHHHHHHS-SCCCTHH-----HHHSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHH
T ss_pred CcHHHHHHHHHHHh-CcCCCcc-----hhcCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 35667776666542 2222222 22233 2 488888888776 34677899999999998
Q ss_pred HHhcc----CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCc-C----HHHHHHHHHHHHhc-CCHHHHHHH
Q 012577 256 KLCES----NPW----LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKL-S----TKHYTALLKVYADH-KMLSKGKDL 321 (460)
Q Consensus 256 ~~~~~----~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~----~~~~~~li~~~~~~-g~~~~a~~~ 321 (460)
.+... ..+ ..+|+.+...|.+.|++++|+..+++..+..... + ..+++.+...|... |++++|...
T Consensus 61 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 61 LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 86543 122 3478899999999999999999999887642111 1 35788899999996 999999999
Q ss_pred HHHHHHcCCC-CC----HHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCH-----HHHHHHHHHHHhcCCHHHHHH
Q 012577 322 VKQMAESGCH-IG----PLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMF-----SSYMLIMDQYAKRGDIHSTEK 391 (460)
Q Consensus 322 ~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~ 391 (460)
+++..+..-. .+ ..++..+...+.+.|++++|...|+++.+..+-.+.. ..|..+..++...|++++|..
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998764210 01 3568889999999999999999999998765333332 156778888999999999999
Q ss_pred HHHHHHHcCCCccH------HHHHHHHHHHH
Q 012577 392 IFHRMRQVGYVARF------KQFQTLVQAYI 416 (460)
Q Consensus 392 ~~~~m~~~~~~~~~------~~~~~l~~~~~ 416 (460)
.|++..+. .|+. ..+..++.+|.
T Consensus 221 ~~~~al~l--~p~~~~~~~~~~l~~l~~~~~ 249 (292)
T 1qqe_A 221 TLQEGQSE--DPNFADSRESNFLKSLIDAVN 249 (292)
T ss_dssp HHHGGGCC-----------HHHHHHHHHHHH
T ss_pred HHHHHHhh--CCCCCCcHHHHHHHHHHHHHH
Confidence 99998864 2321 23455666664
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.13 E-value=7.9e-09 Score=78.38 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=100.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHV 345 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (460)
.+..+...+...|++++|..+++++.+.... +...+..+...+...|++++|...++.+.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 4566677777788888888888887765433 56777778888888888888888888887764 456677778888888
Q ss_pred cCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 346 EGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
..|++++|.++++++.+..+ .+...+..+...+.+.|++++|...++++.+.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 88888888888888876542 345677778888888888888888888887653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.1e-07 Score=79.00 Aligned_cols=229 Identities=10% Similarity=0.008 Sum_probs=140.1
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc---CChh
Q 012577 179 TGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGG--RKEKAEAMLKEMEGDNLKEHRWTCRLLLPLY----AEL---GKAD 249 (460)
Q Consensus 179 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~ 249 (460)
++|+++++.+...+ +-+..+|+.--.++...+ +++++++.++.+....++ +..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45666666655543 334455555555555555 666666666666554433 223343333333 333 5566
Q ss_pred HHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHH--HHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCC------HHHHH
Q 012577 250 QVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVE--EAEAVFKRMSKTWKKLSTKHYTALLKVYADHKM------LSKGK 319 (460)
Q Consensus 250 ~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~------~~~a~ 319 (460)
+++.+++.+.. +| +-.+|+.-.-.+.+.|.++ ++++.++.+.+..+. |...|+.-...+...+. +++++
T Consensus 128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 66666665544 33 4445555555555566666 777777777776655 67777766666666665 77888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhh-HHHHHHHHHHhCC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012577 320 DLVKQMAESGCHIGPLAWDALVKLHVEGGEVEK-ADSILLKAQQQNK-FKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMR 397 (460)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 397 (460)
+.++.++... +-|...|+.+-..+.+.|+... +.++..++.+... -..+...+..+...|.+.|+.++|.++++.+.
T Consensus 207 ~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 207 NYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 8888887764 5577888888777777777444 4456555543221 12355677788888888888888888888887
Q ss_pred H-cCCCccHHHHHHHH
Q 012577 398 Q-VGYVARFKQFQTLV 412 (460)
Q Consensus 398 ~-~~~~~~~~~~~~l~ 412 (460)
+ .+ +.....|+...
T Consensus 286 ~~~D-pir~~yW~~~~ 300 (306)
T 3dra_A 286 SKYN-PIRSNFWDYQI 300 (306)
T ss_dssp HTTC-GGGHHHHHHHH
T ss_pred hccC-hHHHHHHHHHH
Confidence 6 34 44555555443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.4e-09 Score=87.55 Aligned_cols=172 Identities=12% Similarity=-0.045 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHH----------------HHHHHHHhhCHHHHHHHHHhcc
Q 012577 24 RAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYAS----------------CLDLIAKLRGLQKAESYIQKIP 87 (460)
Q Consensus 24 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~ 87 (460)
.+.+......+...|++++|+..|+...... |.+...+.. +..++.+.|++++|...|++..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455555666778899999999998887764 334445555 6677777777777777777765
Q ss_pred cCCC-chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc---hHHHHHHHHHHHcCCCCCHH
Q 012577 88 ESFR-GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK---KKVADVLLLMEKENVKLTQF 163 (460)
Q Consensus 88 ~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~---~~a~~~~~~~~~~~~~~~~~ 163 (460)
...| +...|..+..++...|++++|...|++.++.. |.+..++..+..+|...+. ..+...+..... ..|...
T Consensus 82 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (208)
T 3urz_A 82 QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY 158 (208)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence 5534 45667777777777777777777777777653 2345566666555544443 223333333321 112222
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 012577 164 SYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAI 202 (460)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 202 (460)
.+..+..++...|++++|...|++..+. .|+......
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~ 195 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 2333344455566666666666666654 455444333
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.8e-08 Score=81.47 Aligned_cols=137 Identities=12% Similarity=0.072 Sum_probs=61.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC----ChHHHHHHHH
Q 012577 146 VADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGG----RKEKAEAMLK 221 (460)
Q Consensus 146 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 221 (460)
|...|++..+.| +...+..|...|...+++++|.+.|++..+.| +...+..|...|.. + ++++|...|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 344444444432 34444445555555555555555555555433 34444444444444 3 4555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhccCCC----HHHHHHHHHHHHc----cCCHHHHHHHHHH
Q 012577 222 EMEGDNLKEHRWTCRLLLPLYAE----LGKADQVARIWKLCESNPW----LDVCMAAIEAWGK----LNKVEEAEAVFKR 289 (460)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~----~~~~~~li~~~~~----~~~~~~a~~~~~~ 289 (460)
+..+.| +...+..|...|.. .+++++|..+|+......+ ...+..|...|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554433 22334444444433 4444444444444333222 3334444444433 3344444444444
Q ss_pred HHh
Q 012577 290 MSK 292 (460)
Q Consensus 290 m~~ 292 (460)
..+
T Consensus 155 A~~ 157 (212)
T 3rjv_A 155 SSS 157 (212)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-09 Score=84.60 Aligned_cols=144 Identities=13% Similarity=0.009 Sum_probs=90.7
Q ss_pred HHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChh
Q 012577 272 EAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVE 351 (460)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 351 (460)
..+...|++++|+..+.......+. +...+..+...|.+.|++++|.+.|+...+.. +-+..+|..+..+|.+.|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 3444556667777777666554322 34455566777777777777777777777653 446677777777777777777
Q ss_pred hHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 012577 352 KADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKI-FHRMRQVGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
+|...|+++.+..+- +...|..+...|.+.|++++|.+. +++..+.. |-++.+|....+.+...|+
T Consensus 83 ~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPT--QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 777777777665432 345666677777777777665544 46666654 4456666666666655554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.7e-08 Score=76.49 Aligned_cols=124 Identities=15% Similarity=0.126 Sum_probs=68.4
Q ss_pred HHHHHHhcCChhHHHHHHHHhcc-C-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCH
Q 012577 238 LLPLYAELGKADQVARIWKLCES-N-PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKML 315 (460)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 315 (460)
+...+...|++++|..+++.+.. . .+...+..+...+...|++++|...++++.+.+. .+...+..+...+...|++
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHhcCH
Confidence 33344444444444444443322 1 1333444455555555566666666665555432 2445566666666666667
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Q 012577 316 SKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (460)
++|...++.+.+.. +.+...+..+...+.+.|++++|...++++.+.
T Consensus 86 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 86 DEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 77766666666543 334566666666677777777777777666543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.4e-08 Score=85.70 Aligned_cols=188 Identities=11% Similarity=0.008 Sum_probs=118.1
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC---C-HHH
Q 012577 194 EPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEH--RWTCRLLLPLYAELGKADQVARIWKLCES-NP---W-LDV 266 (460)
Q Consensus 194 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~---~-~~~ 266 (460)
+.+...+..+...+.+.|++++|+..|+++.+...... ...+..+..+|...|++++|...|+.... .| . ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34566777777788888888888888888877543211 45666777778888888888888877654 33 2 234
Q ss_pred HHHHHHHHHc--------cCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 012577 267 CMAAIEAWGK--------LNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWD 338 (460)
Q Consensus 267 ~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 338 (460)
+..+..++.. .|++++|...|+++.+..+. +......+.. +..+... ....+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence 5666666766 77777777777777765332 2222211110 0010000 011235
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcC
Q 012577 339 ALVKLHVEGGEVEKADSILLKAQQQNKFKP-MFSSYMLIMDQYAKR----------GDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 339 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~ 400 (460)
.+...|.+.|++++|+..|+++.+..+-.+ ....+..+..+|... |++++|...|+++.+..
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 566777788888888888888877654322 234566666677655 77788888888887753
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.9e-08 Score=81.37 Aligned_cols=176 Identities=14% Similarity=0.029 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHH
Q 012577 180 GMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELG----KADQVARIW 255 (460)
Q Consensus 180 ~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 255 (460)
+|.+.|++..+.| +..++..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555432 44555555555555566666666666555543 23344444444444 3 444444444
Q ss_pred HHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC
Q 012577 256 KLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYAD----HKMLSKGKDLVKQMAESGCH 331 (460)
Q Consensus 256 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~ 331 (460)
+......+... +..|...|.. .+++++|...|+...+.|..
T Consensus 77 ~~A~~~g~~~a-----------------------------------~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 121 (212)
T 3rjv_A 77 EKAVEAGSKSG-----------------------------------EIVLARVLVNRQAGATDVAHAITLLQDAARDSES 121 (212)
T ss_dssp HHHHHTTCHHH-----------------------------------HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS
T ss_pred HHHHHCCCHHH-----------------------------------HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC
Confidence 44433334444 4444444443 44555555555555444310
Q ss_pred -CCHHHHHHHHHHHHc----CCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 012577 332 -IGPLAWDALVKLHVE----GGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKR-G-----DIHSTEKIFHRMRQVG 400 (460)
Q Consensus 332 -~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~ 400 (460)
.++..+..|...|.. .+++++|..+|++..+.. .+...+..|...|... | +.++|..+|++..+.|
T Consensus 122 ~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~---~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 122 DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS---RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS---CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 013444445555544 455555666555554431 1222344444444432 2 5666666666666555
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.2e-08 Score=84.99 Aligned_cols=188 Identities=9% Similarity=-0.053 Sum_probs=136.5
Q ss_pred CCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-C-CHH
Q 012577 159 KLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD---SSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLK-E-HRW 233 (460)
Q Consensus 159 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~ 233 (460)
+.+...+-.+...+.+.|++++|...|+++.+.. +.+ ...+..+..+|.+.|++++|+..|++..+..+. | ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456677778889999999999999999999864 223 678889999999999999999999999886432 2 245
Q ss_pred HHHHHHHHHHh--------cCChhHHHHHHHHhcc-CCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHH
Q 012577 234 TCRLLLPLYAE--------LGKADQVARIWKLCES-NPWL-DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYT 303 (460)
Q Consensus 234 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 303 (460)
.+..+..++.. .|++++|...|+.+.. .|+. .....+ ..+...... ....+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~--------------~~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDAT--------------QKIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHH--------------HHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHH--------------HHHHHHHHH----HHHHHH
Confidence 67778888888 9999999999998765 4432 222111 111111111 112356
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcC----------CChhhHHHHHHHHHHhCC
Q 012577 304 ALLKVYADHKMLSKGKDLVKQMAESGCHI--GPLAWDALVKLHVEG----------GEVEKADSILLKAQQQNK 365 (460)
Q Consensus 304 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------~~~~~a~~~~~~~~~~~~ 365 (460)
.+...|...|++++|...|+.+.+..... ....+..+..+|... |++++|...|+++.+..+
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 67788888899999999998888753111 245677777777765 888999999998887664
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.02 E-value=3.2e-07 Score=86.01 Aligned_cols=360 Identities=8% Similarity=-0.012 Sum_probs=221.8
Q ss_pred cc-cchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCC-HHHHHH
Q 012577 37 RR-MYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNN-VKKAEE 114 (460)
Q Consensus 37 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~ 114 (460)
.| +++.|..+|+.+...- | . |+++.+..+|+......|++..|...+....+.+. .+....
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P-~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--M-S--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp -----CCHHHHHHHHHHHH--H-T--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred cCcchHHHHHHHHHHHHHC--C-C--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 45 3777777777766543 2 2 89999999999988888999999998887766653 456778
Q ss_pred HHHHHHhC-CC-CCChhhhHHHHHHHHh----cCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh-------------
Q 012577 115 VFNRMKDK-GF-PVTSFACNQLLILYKR----LDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQ------------- 174 (460)
Q Consensus 115 ~~~~m~~~-g~-~~~~~~~~~ll~~~~~----~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~------------- 174 (460)
+|+..+.. |. +++...|...+..+.. .+. +.+..+|+.........-...|......-..
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 88887753 43 3356777777765543 233 6788999999874221112233333221111
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC--C-----hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 012577 175 SNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGG--R-----KEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGK 247 (460)
Q Consensus 175 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 247 (460)
.+.+..|..+++.+...--..+...|...+..-...+ - .+.+..+|+++.... +.+...|...+..+...|+
T Consensus 150 ~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~ 228 (493)
T 2uy1_A 150 LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQ 228 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 1223344555554442100123446666555433221 1 345678899888753 3457788888888899999
Q ss_pred hhHHHHHHHHhccCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhcc------------cCcCHHHHHHHHHHHHhcCC
Q 012577 248 ADQVARIWKLCESNPWLD-VCMAAIEAWGKLNKVEEAEAVFKRMSKTW------------KKLSTKHYTALLKVYADHKM 314 (460)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~------------~~p~~~~~~~li~~~~~~g~ 314 (460)
++.|..++++....|... .+. .|......++. ++.+.+.- .......|...+..+.+.+.
T Consensus 229 ~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~ 301 (493)
T 2uy1_A 229 KEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG 301 (493)
T ss_dssp HHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCC
Confidence 999999998654335433 222 22222111221 22222110 01123557777777778888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012577 315 LSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG-GEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIF 393 (460)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 393 (460)
.+.|..+|+.+ ... ..+...|......-... ++.+.|..+|+...+..+-.| ..|...++...+.|+.+.|..+|
T Consensus 302 ~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~--~~~~~yid~e~~~~~~~~aR~l~ 377 (493)
T 2uy1_A 302 LELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDST--LLKEEFFLFLLRIGDEENARALF 377 (493)
T ss_dssp HHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999 321 23445554333332223 369999999999988765434 45677788888899999999999
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHHH
Q 012577 394 HRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRMR 430 (460)
Q Consensus 394 ~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~ 430 (460)
+++. .....|...+.--...|+ .+..+++++.
T Consensus 378 er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 378 KRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9872 256788888887778888 4555564444
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.7e-08 Score=83.35 Aligned_cols=132 Identities=15% Similarity=-0.018 Sum_probs=68.1
Q ss_pred HHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCC-
Q 012577 238 LLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKM- 314 (460)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~- 314 (460)
+..+|...|++++|...|+.... .| +...+..+...+...|++++|...|++..+..+. +..++..+...|...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHH
Confidence 55555566666666666655443 33 4445666666666666666666666666665433 45566666665554433
Q ss_pred -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHH
Q 012577 315 -LSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYML 375 (460)
Q Consensus 315 -~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 375 (460)
...+...++.... ..|....+.....++...|++++|...|+++.+. .|+......
T Consensus 139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l---~P~~~~~~~ 195 (208)
T 3urz_A 139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR---FPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT---SCCHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCHHHHHH
Confidence 2233444443321 1122223333444455566777777777766543 355444333
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.8e-07 Score=79.98 Aligned_cols=215 Identities=8% Similarity=-0.030 Sum_probs=130.4
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhC---CChH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSN--DLTGMDQVVEAMKSEGIEPDSSTQAILAKHY----VSG---GRKE 214 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~----~~~---~~~~ 214 (460)
++|...+..+.... +-+...|+.--..+...| ++++++++++.+.... +.+..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 34444444444432 223334555555555555 6666666666666543 33444554433333 333 5566
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHhcc-CC-CHHHHHHHHHHHHccCC------HHHHH
Q 012577 215 KAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKAD--QVARIWKLCES-NP-WLDVCMAAIEAWGKLNK------VEEAE 284 (460)
Q Consensus 215 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~------~~~a~ 284 (460)
+++.+++.+.+...+ +..+|+.-.-++.+.|.++ ++++.++.+.. +| +-..|+.-...+.+.+. +++++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 666666666665433 5556655555556666665 66666665544 33 44455555555555554 77888
Q ss_pred HHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 012577 285 AVFKRMSKTWKKLSTKHYTALLKVYADHKMLSK-GKDLVKQMAESG--CHIGPLAWDALVKLHVEGGEVEKADSILLKAQ 361 (460)
Q Consensus 285 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 361 (460)
+.++.+....+. |...|+.+...+.+.|+... +..+...+.+.+ -+.++..+..+...|.+.|+.++|.++++.+.
T Consensus 207 ~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 207 NYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 888888877665 77888888888877777443 555666654432 13467788888888888888899999988886
Q ss_pred H
Q 012577 362 Q 362 (460)
Q Consensus 362 ~ 362 (460)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-06 Score=81.90 Aligned_cols=354 Identities=9% Similarity=-0.000 Sum_probs=219.6
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhC-HHHHHHHHHhccc----CCCchhHHHHH
Q 012577 25 AEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRG-LQKAESYIQKIPE----SFRGEVVYRTL 99 (460)
Q Consensus 25 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~----~~~~~~~~~~l 99 (460)
..+...+..+-. ++++.+..+|+.....- |+...|...+....+.+. .+....+|+.... ...+...|...
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 344444444433 78999999999988753 588888888888777763 3556667776443 23466788888
Q ss_pred HHHHHc----CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc--------------hHHHHHHHHHHHcCCCCC
Q 012577 100 LANCVA----GNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK--------------KKVADVLLLMEKENVKLT 161 (460)
Q Consensus 100 l~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~--------------~~a~~~~~~~~~~~~~~~ 161 (460)
+..+.. +++.+.+.++|++.+......-...|......-...+. ..|..+++.+...--..+
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s 171 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS 171 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 876542 46788999999999874211111122222111111111 122333433332100113
Q ss_pred HHHHHHHHHHHhhcC--C-----hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHH
Q 012577 162 QFSYKILIDIKGQSN--D-----LTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWT 234 (460)
Q Consensus 162 ~~~~~~li~~~~~~~--~-----~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 234 (460)
...|...+..-...+ - .+.+..+|+++.... +.+...|...+..+.+.|+.++|..+|++.... +.+...
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l 248 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFL 248 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHH
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHH
Confidence 345655555432221 1 345678899988754 566888988898899999999999999999987 223222
Q ss_pred HHHHHHHHHhcCChhHHH-HHHHHhccC--------C---CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHH
Q 012577 235 CRLLLPLYAELGKADQVA-RIWKLCESN--------P---WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHY 302 (460)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~-~~~~~~~~~--------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 302 (460)
+. .|....+.++.. .+.+..... + ....|...+....+.+..+.|..+|+.. .. ...+...|
T Consensus 249 ~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~ 322 (493)
T 2uy1_A 249 SL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVF 322 (493)
T ss_dssp HH----HHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHH
T ss_pred HH----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHH
Confidence 22 233222222221 222211100 1 1234666677776778899999999998 32 22344455
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012577 303 TALLKVYAD-HKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYA 381 (460)
Q Consensus 303 ~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (460)
......-.. .++.+.|..+|+...+. ++-++..+...+....+.|+.+.|..+|+.+. .....|...+..-.
T Consensus 323 i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~ 395 (493)
T 2uy1_A 323 IYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEF 395 (493)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 433332222 33699999999999886 34456667777887788999999999999862 24678888888888
Q ss_pred hcCCHHHHHHHHHHHHH
Q 012577 382 KRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 382 ~~g~~~~a~~~~~~m~~ 398 (460)
..|+.+.+.++++++..
T Consensus 396 ~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 396 MVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHSCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 89999999999998874
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-08 Score=81.90 Aligned_cols=161 Identities=8% Similarity=-0.050 Sum_probs=102.0
Q ss_pred hhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHH-H
Q 012577 61 RDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLIL-Y 138 (460)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~-~ 138 (460)
..+......+...|++++|...|++.....| +...+..+...+.+.|++++|...|++..+.. |+...+..+... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 3455667778888999999999988776534 56778888888889999999999998876653 233332222111 1
Q ss_pred Hh-cCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCChHHH
Q 012577 139 KR-LDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEP-DSSTQAILAKHYVSGGRKEKA 216 (460)
Q Consensus 139 ~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~a 216 (460)
.. .+...+...++...+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 11 11233555666655542 3345666666667777777777777777766553211 244666666666667777777
Q ss_pred HHHHHHHH
Q 012577 217 EAMLKEME 224 (460)
Q Consensus 217 ~~~~~~~~ 224 (460)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-08 Score=80.97 Aligned_cols=158 Identities=13% Similarity=0.019 Sum_probs=89.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcc-C-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHH-HHhcC
Q 012577 237 LLLPLYAELGKADQVARIWKLCES-N-PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKV-YADHK 313 (460)
Q Consensus 237 ~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g 313 (460)
.+...+...|++++|...++.... . .+...+..+...+...|++++|...++......+ +...+..+... +...+
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhc
Confidence 444555556666666666655443 2 2444566666666666666666666666554332 33222221111 11222
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012577 314 MLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIF 393 (460)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 393 (460)
...+|...++...+.. +.+...+..+...+...|++++|...|+++.+..+-..+...+..+...+...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2234566666666642 335666777777777777777777777776654432223446666777777777777777777
Q ss_pred HHHH
Q 012577 394 HRMR 397 (460)
Q Consensus 394 ~~m~ 397 (460)
++..
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-08 Score=88.03 Aligned_cols=164 Identities=10% Similarity=-0.065 Sum_probs=98.9
Q ss_pred CChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHH
Q 012577 58 FIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLI 136 (460)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 136 (460)
.+...+..+...+...|++++|...|++.....| +...+..+...+.+.|++++|...+++..... |+.........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 3445555666666777777777777777655434 45566677777777777777777777765542 33322221111
Q ss_pred -HHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCCh
Q 012577 137 -LYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIE-PDSSTQAILAKHYVSGGRK 213 (460)
Q Consensus 137 -~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~l~~~~~~~~~~ 213 (460)
.+...+. ..+...+++..... +.+...+..+...+...|++++|...|+++.+.... .+...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 1222222 44555555555543 445666777777777777777777777777665311 1155677777777777777
Q ss_pred HHHHHHHHHHH
Q 012577 214 EKAEAMLKEME 224 (460)
Q Consensus 214 ~~a~~~~~~~~ 224 (460)
++|...|++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77776666543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.6e-08 Score=99.27 Aligned_cols=172 Identities=9% Similarity=-0.043 Sum_probs=118.9
Q ss_pred hhcCChhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012577 173 GQSNDLTGMDQVVEAMK--------SEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE 244 (460)
Q Consensus 173 ~~~~~~~~a~~~~~~m~--------~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (460)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|+..|+++.+.+.. +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67788888888888877 332 445677777778888888888888888887765432 55677777777788
Q ss_pred cCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012577 245 LGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLV 322 (460)
Q Consensus 245 ~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 322 (460)
.|++++|...|++... .| +...+..+..++.+.|++++ .+.|++..+.++. +...|..+..++.+.|++++|...|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888887776654 44 45567777777777788877 7777777765443 5667777777777888888888777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 012577 323 KQMAESGCHIGPLAWDALVKLHVEGGE 349 (460)
Q Consensus 323 ~~~~~~~~~~~~~~~~~li~~~~~~~~ 349 (460)
+++.+.. +-+...+..+..++...++
T Consensus 558 ~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HhhcccC-cccHHHHHHHHHHHHccCC
Confidence 7776642 2234566666666655444
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.4e-08 Score=86.94 Aligned_cols=163 Identities=8% Similarity=-0.070 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCCHHHHH-HHHH
Q 012577 195 PDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NPWLDVCM-AAIE 272 (460)
Q Consensus 195 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~-~li~ 272 (460)
.+...+..+...+...|++++|...|++..+.... +...+..+..++...|++++|...++.+.. .|+..... ....
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 34445555555566666666666666666554322 334455555555555555555555554433 23222111 1111
Q ss_pred HHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCChh
Q 012577 273 AWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCH-IGPLAWDALVKLHVEGGEVE 351 (460)
Q Consensus 273 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~ 351 (460)
.+...++.+.|...+++.....+. +...+..+...+...|++++|...+..+.+..-. .+...+..++..+...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 233333444444444444443221 3344444444444444444444444444443200 01333444444444444444
Q ss_pred hHHHHHHH
Q 012577 352 KADSILLK 359 (460)
Q Consensus 352 ~a~~~~~~ 359 (460)
+|...+++
T Consensus 273 ~a~~~~r~ 280 (287)
T 3qou_A 273 ALASXYRR 280 (287)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 44444433
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.97 E-value=8.6e-08 Score=84.43 Aligned_cols=171 Identities=6% Similarity=-0.023 Sum_probs=103.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC----CC-CHHHHHHHHHHHHhcCChh
Q 012577 175 SNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNL----KE-HRWTCRLLLPLYAELGKAD 249 (460)
Q Consensus 175 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~ 249 (460)
.++++.|...|.+. ...|...|++++|...|.+..+... .+ -..+|..+..+|...|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 46666666666554 3456677888888877776654211 00 1245666777777777777
Q ss_pred HHHHHHHHhcc----CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCc-----CHHHHHHHHHHHHhcCCHH
Q 012577 250 QVARIWKLCES----NPW----LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKL-----STKHYTALLKVYADHKMLS 316 (460)
Q Consensus 250 ~a~~~~~~~~~----~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~ 316 (460)
+|...+++... ..+ ..++..+...|.. |++++|+..|++..+..... ...++..+...|...|+++
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 77777765432 111 2355666677766 77777777777666432110 1345666777777777777
Q ss_pred HHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 012577 317 KGKDLVKQMAES----GCHIG-PLAWDALVKLHVEGGEVEKADSILLKAQ 361 (460)
Q Consensus 317 ~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~ 361 (460)
+|...|++..+. +..+. ...+..+...+...|++++|...|++..
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777777776652 11111 1245555566666677777777777765
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.96 E-value=7.5e-08 Score=80.55 Aligned_cols=186 Identities=11% Similarity=-0.020 Sum_probs=118.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCCH----HHHH
Q 012577 196 DSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLK-EH-RWTCRLLLPLYAELGKADQVARIWKLCES-NPWL----DVCM 268 (460)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~----~~~~ 268 (460)
+...+..+...+.+.|++++|+..|+++.+..+. |. ...+..+..+|.+.|++++|...|+.+.. .|+. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4456666777888999999999999998875432 11 34677788889999999999999987665 4432 1344
Q ss_pred HHHHHHHc------------------cCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 012577 269 AAIEAWGK------------------LNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGC 330 (460)
Q Consensus 269 ~li~~~~~------------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 330 (460)
.+..++.. .|++++|...|+++.+..+. +...+...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH-----
Confidence 44444443 34556666666666554322 11111111000 0000000
Q ss_pred CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 331 HIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM-FSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 331 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
......+...|.+.|++++|...|+++.+..+-.|. ...+..+..++.+.|+.++|.+.++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 011134566778889999999999998887643332 2467778889999999999999999888764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=9.1e-09 Score=79.97 Aligned_cols=143 Identities=8% Similarity=-0.058 Sum_probs=101.8
Q ss_pred HHHHHhcCChhHHHHHHHHhccC-C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHH
Q 012577 239 LPLYAELGKADQVARIWKLCESN-P-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLS 316 (460)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 316 (460)
...+...|++++|...++..... | ....+..+...|.+.|++++|++.|++..+..+. +..+|..+...|...|+++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchH
Confidence 34455567777777777765542 2 2334566778888888888888888888876554 6788888888888899999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHH-HHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 012577 317 KGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSI-LLKAQQQNKFKPMFSSYMLIMDQYAKRGD 385 (460)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (460)
+|...|+...+.. +-+...+..+...|.+.|++++|.+. ++++.+..+- +...|......+.+.|+
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~--~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG--SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT--CHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHhCc
Confidence 9999988888864 44678888888888888888776655 4777765532 34566666666666654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-07 Score=79.59 Aligned_cols=185 Identities=11% Similarity=-0.051 Sum_probs=127.2
Q ss_pred CHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH--HHHH
Q 012577 161 TQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIE-P-DSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHR--WTCR 236 (460)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 236 (460)
+...+..+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|+..|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455666788899999999999999999875311 1 1467888899999999999999999999876543221 2444
Q ss_pred HHHHHHHh------------------cCChhHHHHHHHHhcc-CCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhcccC
Q 012577 237 LLLPLYAE------------------LGKADQVARIWKLCES-NPWLD-VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKK 296 (460)
Q Consensus 237 ~l~~~~~~------------------~~~~~~a~~~~~~~~~-~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 296 (460)
.+..++.. .|++++|...|+.+.. .|+.. .+.+.. ....+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~--------------~l~~~~~~--- 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATK--------------RLVFLKDR--- 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHH--------------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHH--------------HHHHHHHH---
Confidence 45555543 5789999999998766 45432 222111 11111100
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHcCCChhhHHHHHHHHHHhC
Q 012577 297 LSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGP---LAWDALVKLHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 297 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
.......+...|.+.|++++|...|+.+.+.. +.+. ..+..+..+|.+.|+.++|.+.++.+....
T Consensus 146 -~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 146 -LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01122345677888899999999999988763 2222 567788889999999999999998876543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.4e-08 Score=99.71 Aligned_cols=171 Identities=10% Similarity=-0.064 Sum_probs=141.4
Q ss_pred HhCCChHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCCHHHHHHHHHHHHcc
Q 012577 208 VSGGRKEKAEAMLKEME--------GDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES--NPWLDVCMAAIEAWGKL 277 (460)
Q Consensus 208 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~ 277 (460)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|...++.... ..+...|..+...+...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 78899999999999998 432 23557788899999999999999999998766 34677899999999999
Q ss_pred CCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHH
Q 012577 278 NKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSIL 357 (460)
Q Consensus 278 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 357 (460)
|++++|.+.|++..+..+. +...|..+..+|.+.|++++ ...|++..+.+ +.+...|..+..++.+.|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999987554 67889999999999999999 99999999874 557889999999999999999999999
Q ss_pred HHHHHhCCCCcC-HHHHHHHHHHHHhcCC
Q 012577 358 LKAQQQNKFKPM-FSSYMLIMDQYAKRGD 385 (460)
Q Consensus 358 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 385 (460)
+++.+.. |+ ...+..+..++...|+
T Consensus 558 ~~al~l~---P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTS---RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTS---TTHHHHHHHHHHHTC----
T ss_pred HhhcccC---cccHHHHHHHHHHHHccCC
Confidence 9886543 44 4566667777766554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.9e-08 Score=94.74 Aligned_cols=153 Identities=8% Similarity=-0.043 Sum_probs=96.5
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHH
Q 012577 210 GGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVF 287 (460)
Q Consensus 210 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~ 287 (460)
.|++++|+..|++..+.... +...+..+...+...|++++|...+++... .| +...+..+...|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46778888888877665432 456777777778888888888887776654 33 4556777777777778888888888
Q ss_pred HHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---CChhhHHHHHHHHHHhC
Q 012577 288 KRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG---GEVEKADSILLKAQQQN 364 (460)
Q Consensus 288 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~ 364 (460)
++..+.... +...+..+...|...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.++++.+..
T Consensus 81 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 777765433 56677777777777888888888877777753 44566777777777777 77777877777777655
Q ss_pred C
Q 012577 365 K 365 (460)
Q Consensus 365 ~ 365 (460)
+
T Consensus 159 p 159 (568)
T 2vsy_A 159 V 159 (568)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.8e-08 Score=94.87 Aligned_cols=150 Identities=13% Similarity=0.031 Sum_probs=68.5
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 012577 176 NDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIW 255 (460)
Q Consensus 176 ~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 255 (460)
|++++|.+.|++..+.. +.+...|..+...+...|++++|...|++..+.... +...+..+..+|...|++++|...+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44555555555544432 223445555555555555555555555555544321 3444555555555555555555555
Q ss_pred HHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 012577 256 KLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADH---KMLSKGKDLVKQMAES 328 (460)
Q Consensus 256 ~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~ 328 (460)
++... .| +...+..+...|.+.|++++|.+.|++..+.... +...+..+...+... |++++|.+.+++..+.
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 54433 22 3345555555555555555555555555554322 344555555555555 5555555555555554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-06 Score=76.45 Aligned_cols=160 Identities=13% Similarity=-0.017 Sum_probs=108.2
Q ss_pred HHHHHhcCChhHHHHHHHHhccCC----C----HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccC-cC----HHHHHHH
Q 012577 239 LPLYAELGKADQVARIWKLCESNP----W----LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKK-LS----TKHYTAL 305 (460)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~~~----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l 305 (460)
+..+...|++++|..+++.....+ + ...+..+...+...+++++|+..|+...+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 444555566666666665544311 1 112334666677778888888888888763221 22 2368888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc-----CCCC-CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhC---CCCcC-HHHHHH
Q 012577 306 LKVYADHKMLSKGKDLVKQMAES-----GCHI-GPLAWDALVKLHVEGGEVEKADSILLKAQQQN---KFKPM-FSSYML 375 (460)
Q Consensus 306 i~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~ 375 (460)
...|...|++++|...++.+.+. +..+ ...++..+...|.+.|++++|...+++..+.. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 88899999999999988888741 1111 23477888889999999999999998876532 11121 467888
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHH
Q 012577 376 IMDQYAKRGD-IHSTEKIFHRMRQ 398 (460)
Q Consensus 376 l~~~~~~~g~-~~~a~~~~~~m~~ 398 (460)
+..++.+.|+ +++|.+.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8889999994 6999999888764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.85 E-value=4.2e-07 Score=75.15 Aligned_cols=128 Identities=12% Similarity=-0.007 Sum_probs=85.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 012577 268 MAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG 347 (460)
Q Consensus 268 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 347 (460)
..+...+...|++++|...|++.. .|+...+..+...|...|++++|...++...+.. +.+...+..+..+|...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 344556666677777777776553 3466677777777777777777777777776653 44566777777777777
Q ss_pred CChhhHHHHHHHHHHhCCCCc--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 348 GEVEKADSILLKAQQQNKFKP--------------MFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
|++++|.+.|+++.+..+-.+ ....+..+..++.+.|++++|.+.|++..+..
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 777777777777765432111 12566677777778888888888888777654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.85 E-value=4e-07 Score=80.11 Aligned_cols=216 Identities=13% Similarity=0.076 Sum_probs=155.0
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 012577 174 QSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVS-GGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVA 252 (460)
Q Consensus 174 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 252 (460)
..|++++|.+++++..+.. +.. +.+ .+++++|...|... ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3577888999998876542 111 122 57888888888765 45678899999999
Q ss_pred HHHHHhcc----CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhccc---Cc--CHHHHHHHHHHHHhcCCHHHHH
Q 012577 253 RIWKLCES----NPW----LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWK---KL--STKHYTALLKVYADHKMLSKGK 319 (460)
Q Consensus 253 ~~~~~~~~----~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p--~~~~~~~li~~~~~~g~~~~a~ 319 (460)
..|.+... ..+ ..+|+.+...|.+.|++++|+..|++..+... .| ...++..+...|.. |++++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 98876543 222 33688889999999999999999998765321 11 23577888889988 9999999
Q ss_pred HHHHHHHHcCCCC-----CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHhcCCHHHHH
Q 012577 320 DLVKQMAESGCHI-----GPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM----FSSYMLIMDQYAKRGDIHSTE 390 (460)
Q Consensus 320 ~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~ 390 (460)
..+++..+..-.. ...++..+...|.+.|++++|++.|+++.+..+-.++ ...+..+..++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999987631111 1467888999999999999999999998764321111 235666777888889999999
Q ss_pred HHHHHHHHcCCCcc------HHHHHHHHHHHHhcCC
Q 012577 391 KIFHRMRQVGYVAR------FKQFQTLVQAYINAKT 420 (460)
Q Consensus 391 ~~~~~m~~~~~~~~------~~~~~~l~~~~~~~g~ 420 (460)
..|++.. .. |+ ......++.++ ..|+
T Consensus 216 ~~~~~al-~~--p~~~~~~e~~~l~~l~~~~-~~~d 247 (307)
T 2ifu_A 216 KCVRESY-SI--PGFSGSEDCAALEDLLQAY-DEQD 247 (307)
T ss_dssp HHHHHHT-TS--TTSTTSHHHHHHHHHHHHH-HTTC
T ss_pred HHHHHHh-CC--CCCCCCHHHHHHHHHHHHH-HhcC
Confidence 9999988 42 32 22455566655 4455
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.84 E-value=1.9e-07 Score=73.69 Aligned_cols=131 Identities=8% Similarity=-0.078 Sum_probs=99.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHV 345 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (460)
.+..+...+...|++++|...|+...+.... +...+..+...+...|++++|...++...+.. +.+...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 4566777788888888888888888776443 67788888888888999999999998888763 556788888888889
Q ss_pred cCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 346 EGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
..|++++|...++++.+..+-.+....+......+.+.|++++|.+.+.+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999998887654333322223444447778889999888887653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.83 E-value=3.3e-07 Score=80.05 Aligned_cols=95 Identities=12% Similarity=-0.055 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhC----CCCCC-H
Q 012577 164 SYKILIDIKGQSNDLTGMDQVVEAMKS----E-GIEPD-SSTQAILAKHYVSGGRKEKAEAMLKEMEGD----NLKEH-R 232 (460)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~m~~----~-g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~ 232 (460)
+++.+...|...|++++|...|+++.+ . +..+. ..++..+...|.+.|++++|+..+++..+. +..+. .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 466666666777777777777666652 1 11111 235666666677777777777766665431 11111 4
Q ss_pred HHHHHHHHHHHhcCC-hhHHHHHHHHh
Q 012577 233 WTCRLLLPLYAELGK-ADQVARIWKLC 258 (460)
Q Consensus 233 ~~~~~l~~~~~~~~~-~~~a~~~~~~~ 258 (460)
.+|..+..+|...|+ +++|...++..
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 566666667777773 46666666543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.4e-07 Score=67.86 Aligned_cols=108 Identities=6% Similarity=-0.017 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012577 300 KHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQ 379 (460)
Q Consensus 300 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (460)
..+......|.+.|++++|...|++.++.. +.+..+|..+..+|.+.|++++|+..++++++.++ .+...|..+..+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS--KFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh--hhhHHHHHHHHH
Confidence 345566667777777777777777776653 44666777777777777777777777777766542 334566777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 012577 380 YAKRGDIHSTEKIFHRMRQVGYVARFKQFQTL 411 (460)
Q Consensus 380 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 411 (460)
+...|++++|++.|++..+.. |.+...+..|
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l 121 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD-PSNEEAREGV 121 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHH
Confidence 777777777777777777754 4444444444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2.9e-05 Score=68.22 Aligned_cols=240 Identities=8% Similarity=-0.004 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-C-ChHHHHHHH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSN-DLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSG-G-RKEKAEAML 220 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~ 220 (460)
++|.++++.+.... +-+..+|+.--..+...| ++++++++++.+.... +.+..+|+.-...+.+. + ++++++.++
T Consensus 71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 44555555555442 233334444444444444 3555555555555443 33444444444433333 3 445555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHH
Q 012577 221 KEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTK 300 (460)
Q Consensus 221 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 300 (460)
+.+.+...+ +..+|+.-.-++.+.|.++.+ + ...+.++++.++++.+..+. |..
T Consensus 149 ~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~-----------~-------------~~~~~eELe~~~k~I~~dp~-N~S 202 (349)
T 3q7a_A 149 HGSLLPDPK-NYHTWAYLHWLYSHFSTLGRI-----------S-------------EAQWGSELDWCNEMLRVDGR-NNS 202 (349)
T ss_dssp HHHTSSCTT-CHHHHHHHHHHHHHHHHTTCC-----------C-------------HHHHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHhcccccc-----------c-------------hhhHHHHHHHHHHHHHhCCC-CHH
Confidence 555444322 333333332222222222200 0 00012666666666666554 666
Q ss_pred HHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh--------------------hhH
Q 012577 301 HYTALLKVYADHKM-------LSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEV--------------------EKA 353 (460)
Q Consensus 301 ~~~~li~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--------------------~~a 353 (460)
.|+.....+.+.++ ++++++.++.+.... +-|...|+-+-..+.+.|+. ...
T Consensus 203 AW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (349)
T 3q7a_A 203 AWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETV 281 (349)
T ss_dssp HHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC----------
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhH
Confidence 66666666666554 566777777766653 45666676665555555543 122
Q ss_pred HHHHHHHHHhC----CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 012577 354 DSILLKAQQQN----KFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLV 412 (460)
Q Consensus 354 ~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 412 (460)
.+....+.... .-.+.......++..|...|+.++|.++++.+.+.-=+....-|+-.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 282 EAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp ----CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 22222221111 013556677788888888888888888888887542133444454443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-07 Score=76.76 Aligned_cols=132 Identities=9% Similarity=0.031 Sum_probs=66.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhc----c-cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC--C--CHH
Q 012577 267 CMAAIEAWGKLNKVEEAEAVFKRMSKT----W-KKLSTKHYTALLKVYADHKMLSKGKDLVKQMAES--GCH--I--GPL 335 (460)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~----~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~--~--~~~ 335 (460)
+..+...+...|++++|...+++..+. + ......++..+...+...|++++|...+++..+. ... + ...
T Consensus 29 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 108 (203)
T 3gw4_A 29 RFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASA 108 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHH
Confidence 344444444444444444444444331 0 1112344555556666666666666666655432 011 1 123
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 336 AWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM----FSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
.+..+...+...|++++|...+++..+...-..+ ..++..+...+...|++++|.+.+++..+
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 109 NAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4555566666666666666666665432111111 12345566666777777777777666654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.6e-06 Score=75.70 Aligned_cols=28 Identities=4% Similarity=-0.236 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 012577 199 TQAILAKHYVSGGRKEKAEAMLKEMEGD 226 (460)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (460)
.+...+..+...|++++|...+++..+.
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~ 104 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence 3444555566666666666666665554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.75 E-value=8.3e-07 Score=65.90 Aligned_cols=115 Identities=15% Similarity=0.162 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 012577 299 TKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMD 378 (460)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (460)
...+..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|..+++++.+..+ .+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--ccHHHHHHHHH
Confidence 4456666666777777777777777766653 34566666677777777777777777777665432 34456666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 012577 379 QYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYIN 417 (460)
Q Consensus 379 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 417 (460)
.+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 7777777777777777777654 4455555555555443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=1e-06 Score=72.80 Aligned_cols=128 Identities=13% Similarity=-0.001 Sum_probs=79.0
Q ss_pred hHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcC
Q 012577 63 YASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLD 142 (460)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 142 (460)
+..+...+...|++++|...|++... ++...|..+..++.+.|++++|...|++..+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------- 67 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQD--PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD------------------- 67 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------
Confidence 33455555666666666666666643 455566666666666666666666666655432
Q ss_pred chHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC----------------HHHHHHHHHH
Q 012577 143 KKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPD----------------SSTQAILAKH 206 (460)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----------------~~~~~~l~~~ 206 (460)
+.+...|..+..++...|++++|.+.|++..+.. +.+ ...+..+..+
T Consensus 68 ----------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (213)
T 1hh8_A 68 ----------------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFM 130 (213)
T ss_dssp ----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHH
T ss_pred ----------------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHH
Confidence 2344556666666666677777777766666542 111 2566667777
Q ss_pred HHhCCChHHHHHHHHHHHhCCC
Q 012577 207 YVSGGRKEKAEAMLKEMEGDNL 228 (460)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~~~ 228 (460)
+...|++++|...|+...+...
T Consensus 131 ~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 131 YAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHccCHHHHHHHHHHHHHcCc
Confidence 7777777777777777766543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.72 E-value=1e-06 Score=76.94 Aligned_cols=95 Identities=11% Similarity=-0.036 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhCCChHHHHHHHHHHHhCC----CCC-C
Q 012577 163 FSYKILIDIKGQSNDLTGMDQVVEAMKSE-GIEPD-----SSTQAILAKHYVSGGRKEKAEAMLKEMEGDN----LKE-H 231 (460)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~ 231 (460)
.+|+.+...|...|++++|...|++..+. ...|+ ..++..+...|...|++++|+..+++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 35666777777777777777777766521 00111 1466677777777777777777777665321 111 1
Q ss_pred HHHHHHHHHHHHhcCChhHH-HHHHHH
Q 012577 232 RWTCRLLLPLYAELGKADQV-ARIWKL 257 (460)
Q Consensus 232 ~~~~~~l~~~~~~~~~~~~a-~~~~~~ 257 (460)
..+|..+..+|...|++++| ...++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 45666777777777777777 555554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=6.3e-07 Score=67.52 Aligned_cols=118 Identities=4% Similarity=-0.081 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012577 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIM 377 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 377 (460)
+...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.++++.+..+ .+...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP--TFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CchHHHHHHH
Confidence 44556666666777777777777777766642 33566666677777777777777777777665432 2445666667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 012577 378 DQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAK 419 (460)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 419 (460)
.++.+.|++++|.+.|++..+.. +.+...+..+...+...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 77777777777777777776654 334555666666655544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.9e-05 Score=69.40 Aligned_cols=237 Identities=11% Similarity=0.002 Sum_probs=148.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc--hHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 012577 96 YRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK--KKVADVLLLMEKENVKLTQFSYKILIDIKG 173 (460)
Q Consensus 96 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 173 (460)
++.+.....+.+..++|++++++++..+. -+..+|+.--..+...+. +++...++.+.... +-+..+|+.-...+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 44444445566677899999999998752 255667776667777773 89999999998875 667778888877777
Q ss_pred hc-C-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012577 174 QS-N-DLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKE--------KAEAMLKEMEGDNLKEHRWTCRLLLPLYA 243 (460)
Q Consensus 174 ~~-~-~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 243 (460)
+. + ++++++++++.+.+.. +.|..+|+.-...+.+.|.++ ++++.++++.+.++. |...|+.....+.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRV 212 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 76 7 8999999999999876 567888887766666666666 788888888876654 6667777666666
Q ss_pred hcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCH--------
Q 012577 244 ELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKML-------- 315 (460)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-------- 315 (460)
+.++.... ...++++++.++++....+. |...|+.+-..+.+.|+.
T Consensus 213 ~l~~~~~~-------------------------~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~ 266 (349)
T 3q7a_A 213 SRPGAETS-------------------------SRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAI 266 (349)
T ss_dssp TSTTCCCC-------------------------HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHH
T ss_pred hccccccc-------------------------hHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccc
Confidence 65541000 00023334444443333222 334444333333333321
Q ss_pred ------------HHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 316 ------------SKGKDLVKQMAESG-----CHIGPLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 316 ------------~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
....++...+...+ -.+++..+..++..|...|+.++|.++++.+.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 267 LPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 11222222222111 135667777788888888888888888887754
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.70 E-value=2.2e-07 Score=80.52 Aligned_cols=194 Identities=11% Similarity=-0.023 Sum_probs=129.6
Q ss_pred CHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHH
Q 012577 23 SRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLA 101 (460)
Q Consensus 23 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~ 101 (460)
+...+..+...+...|++++|+..|+...... +.+...+..+..++.+.|++++|...+++.....| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45677788888999999999999999988865 45778888999999999999999999999877655 5678889999
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHH
Q 012577 102 NCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGM 181 (460)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 181 (460)
++...|++++|...|++..+.+. -+...+...+....+... . ..+........+.+......+... ..|++++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAK-EQRLNFGDDIPSALRIAK--K-KRWNSIEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH-HTTCCCCSHHHHHHHHHH--H-HHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHHHH--H-HHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 99999999999999999877531 111222222222221111 1 112223333334444444444332 26788888
Q ss_pred HHHHHHHHhCCCCCCH-HHHHHHHHHHHhC-CChHHHHHHHHHHHhC
Q 012577 182 DQVVEAMKSEGIEPDS-STQAILAKHYVSG-GRKEKAEAMLKEMEGD 226 (460)
Q Consensus 182 ~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 226 (460)
.+.++...+. .|+. .....+...+.+. +.+++|..+|..+.+.
T Consensus 155 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8888777755 3443 3333443334444 5677788888777653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=1.4e-06 Score=65.23 Aligned_cols=119 Identities=6% Similarity=-0.076 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012577 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIM 377 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 377 (460)
+...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.+++..+..+ .+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP--AYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc--cCHHHHHHHH
Confidence 34556666667777777777777777776653 34566677777777777777777777777766532 2345666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 012577 378 DQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
..+.+.|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 77777777777777777777664 4456666666666666554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.2e-06 Score=65.41 Aligned_cols=97 Identities=11% Similarity=-0.070 Sum_probs=77.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHV 345 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (460)
.+......|.+.|++++|++.|++..+..+. +...|..+..+|.+.|++++|...++..++.. +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 4566777888888888888888888776543 67788888888888888888888888888764 456778888888888
Q ss_pred cCCChhhHHHHHHHHHHhC
Q 012577 346 EGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~ 364 (460)
..|++++|.+.|+++.+..
T Consensus 93 ~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHC
Confidence 8888888888888887754
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.66 E-value=8.8e-07 Score=72.43 Aligned_cols=158 Identities=11% Similarity=0.032 Sum_probs=80.9
Q ss_pred hhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCh
Q 012577 173 GQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD----NLKEHRWTCRLLLPLYAELGKA 248 (460)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~ 248 (460)
...|++++|.++++.+... ......++..+...+...|++++|...+++..+. +..+.
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------------- 64 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA----------------- 64 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHH-----------------
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHH-----------------
Confidence 3456666666644444321 1123455666666666666666666666655431 11100
Q ss_pred hHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc----ccCc--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 012577 249 DQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT----WKKL--STKHYTALLKVYADHKMLSKGKDLV 322 (460)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~ 322 (460)
....+..+...+...|++++|...+++..+. +..| ....+..+...+...|++++|...+
T Consensus 65 --------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 130 (203)
T 3gw4_A 65 --------------EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEY 130 (203)
T ss_dssp --------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 1123444455555555555555555544432 1011 1234556666666777777777776
Q ss_pred HHHHHcCC-CCC----HHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 323 KQMAESGC-HIG----PLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 323 ~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
++..+..- ..+ ..++..+...+...|++++|.+.+++..+
T Consensus 131 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 131 EKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 66653210 011 22345666677777777777777776654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=3.4e-07 Score=70.73 Aligned_cols=99 Identities=7% Similarity=-0.019 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012577 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIM 377 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 377 (460)
+...+..+...+...|++++|...|+...... +.+...|..+..+|...|++++|...|+++....+- +...+..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX--EPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CchHHHHHH
Confidence 34455556666666777777777777666653 445666666666677777777777777766655432 334556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 012577 378 DQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
.+|...|++++|.+.|++..+.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6677777777777777766654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=3.6e-07 Score=70.62 Aligned_cols=105 Identities=15% Similarity=0.007 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012577 263 WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVK 342 (460)
Q Consensus 263 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 342 (460)
+...+..+...+.+.|++++|...|+......+. +...|..+..+|...|++++|...|+...... +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 3445667778888889999999999988876543 77888888889999999999999999988864 456788888899
Q ss_pred HHHcCCChhhHHHHHHHHHHhCCCCcC
Q 012577 343 LHVEGGEVEKADSILLKAQQQNKFKPM 369 (460)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~ 369 (460)
+|...|++++|...|+++.+..+-.|.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 999999999999999988876654444
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.64 E-value=8.9e-07 Score=68.37 Aligned_cols=96 Identities=14% Similarity=0.010 Sum_probs=51.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHV 345 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (460)
.+..+...+.+.|++++|...|+......+. +...|..+..+|...|++++|...|+...+.. +.++..|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 4444555555555555555555555554332 44555555555555555555555555555542 334455555555555
Q ss_pred cCCChhhHHHHHHHHHHh
Q 012577 346 EGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~ 363 (460)
+.|++++|...|+++.+.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 555555555555555543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.3e-07 Score=73.10 Aligned_cols=100 Identities=6% Similarity=-0.045 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012577 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIM 377 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 377 (460)
+...+..+...+.+.|++++|...|+.+.+.. +.+...|..+..+|...|++++|...|+++.+..+- +...|..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~--~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN--DYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS--CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC--CcHHHHHHH
Confidence 45578888899999999999999999999874 567899999999999999999999999999987654 346788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 012577 378 DQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
.+|.+.|++++|+..|++..+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999864
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.63 E-value=2.6e-06 Score=63.10 Aligned_cols=115 Identities=13% Similarity=0.074 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012577 264 LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKL 343 (460)
Q Consensus 264 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 343 (460)
...+..+...+...|++++|.+.++++.+... .+..++..+...+...|++++|...++.+.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 34566677777778888888888887776543 256777788888888888888888888887763 4567778888888
Q ss_pred HHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 012577 344 HVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAK 382 (460)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (460)
+...|++++|...++++.+..+ .+...+..+...+.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDP--NNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHh
Confidence 8888888888888888876543 233444444444433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.63 E-value=6.3e-07 Score=71.66 Aligned_cols=121 Identities=9% Similarity=0.110 Sum_probs=77.9
Q ss_pred ccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCCh--hh
Q 012577 276 KLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKL-HVEGGEV--EK 352 (460)
Q Consensus 276 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~--~~ 352 (460)
..|++++|...++...+..+. +...|..+...|...|++++|...++.+.+.. +.+...+..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 456666777777766665432 55667777777777777777777777776653 3456666666666 6667776 77
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 353 ADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
|...++++.+..+ .+...+..+...+...|++++|...|+++.+..
T Consensus 100 A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDS--NEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCC--CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 7777777766542 234566667777777777777777777777653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.62 E-value=2e-06 Score=67.62 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=9.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHH
Q 012577 269 AAIEAWGKLNKVEEAEAVFKRMS 291 (460)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~ 291 (460)
.+...+...|++++|...|++..
T Consensus 86 ~~a~~~~~~~~~~~A~~~~~~a~ 108 (166)
T 1a17_A 86 RRAASNMALGKFRAALRDYETVV 108 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHH
Confidence 33333334444444444444433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=7.8e-05 Score=65.13 Aligned_cols=195 Identities=12% Similarity=-0.026 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCC-HHHHHHHH
Q 012577 213 KEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGK--ADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNK-VEEAEAVF 287 (460)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~-~~~a~~~~ 287 (460)
+++++.+++.+....++ +..+|+.-..++...++ +++++.+++.+.. +| +...|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 34555555555544332 44445444444444442 4555555554443 22 34444444444444455 35666666
Q ss_pred HHHHhcccCcCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC------
Q 012577 288 KRMSKTWKKLSTKHYTALLKVYADH--------------KMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG------ 347 (460)
Q Consensus 288 ~~m~~~~~~p~~~~~~~li~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~------ 347 (460)
+.+.+..+. |...|+.....+.+. +.++++++.+....... +-|...|+-+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcccc
Confidence 666665444 555555554444433 34666777777776653 45666666554444444
Q ss_pred -----CChhhHHHHHHHHHHhCCCCcCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 012577 348 -----GEVEKADSILLKAQQQNKFKPMFSSYMLIMDQ-----YAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAY 415 (460)
Q Consensus 348 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 415 (460)
+.++++++.++++.+.. ||. .|..+..+ .-..|..+++...+.++.+.+ |....-|.-+...+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~---pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D-p~r~~~y~d~~~~~ 319 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELE---PEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSKF 319 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC-GGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhC---ccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC-cchhhHHHHHHHHH
Confidence 34677777777777644 443 34322221 223567778888888888765 44555555554443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.62 E-value=2.3e-07 Score=80.38 Aligned_cols=190 Identities=12% Similarity=0.011 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHH
Q 012577 198 STQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWG 275 (460)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~ 275 (460)
..+..+...+...|++++|+..|++..+.... +...+..+..+|...|++++|...++.... .| +...+..+..+|.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33444444444444444444444444433211 334444444444444444444444444333 22 3344555555566
Q ss_pred ccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHH
Q 012577 276 KLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADS 355 (460)
Q Consensus 276 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 355 (460)
..|++++|...|+...+..+. +...+...+....+ ..++. -+........+.+......+... ..|+.++|.+
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~ 156 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTRL--IAAERERELE 156 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHH
Confidence 666666666666655543221 11111111111111 11111 11222223344444444444332 2477777777
Q ss_pred HHHHHHHhCCCCcCH-HHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 012577 356 ILLKAQQQNKFKPMF-SSYMLIMDQYAKR-GDIHSTEKIFHRMRQ 398 (460)
Q Consensus 356 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 398 (460)
.++.+.+. .|+. .....+...+.+. +.+++|.++|.++.+
T Consensus 157 ~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 157 ECQRNHEG---HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTSGGGTT---TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHhhhcc---ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 77766543 3432 2333333334444 567778888876654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=2.8e-06 Score=63.58 Aligned_cols=118 Identities=8% Similarity=-0.097 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012577 265 DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLH 344 (460)
Q Consensus 265 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 344 (460)
..+..+...+...|++++|...|+........ +...+..+...+...|++++|...++...+.. +.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 35666777777888888888888887765432 66778888888888888888888888888763 44677888888888
Q ss_pred HcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 012577 345 VEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDI 386 (460)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 386 (460)
...|++++|...++++.+..+ .+...+..+..++.+.|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP--DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHhcC
Confidence 888888888888888877643 2445666777777766654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.5e-06 Score=64.12 Aligned_cols=118 Identities=8% Similarity=-0.106 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012577 263 WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVK 342 (460)
Q Consensus 263 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 342 (460)
+...+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 3445667777777788888888888877765433 56777777888888888888888888887763 446777888888
Q ss_pred HHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC
Q 012577 343 LHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRG 384 (460)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 384 (460)
.+.+.|++++|.+.|++..+..+- +...+..+..++.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSS--CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGG--GTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHhc
Confidence 888888888888888887765432 2345555555555544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.9e-06 Score=68.84 Aligned_cols=120 Identities=12% Similarity=0.038 Sum_probs=79.8
Q ss_pred hcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHH-HHhcCCH--HHH
Q 012577 244 ELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKV-YADHKML--SKG 318 (460)
Q Consensus 244 ~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~~a 318 (460)
..|++++|...++.... .| +...+..+...|...|++++|...|++..+..+. +...+..+... +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHH
Confidence 34556666666655433 33 4456667777777777777777777777765443 56666677777 6677777 888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCC
Q 012577 319 KDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNK 365 (460)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 365 (460)
...++.+.+.. +.+...+..+...|...|++++|...|+++.+..+
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 88888877763 44567777777788888888888888888776543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.6e-06 Score=72.28 Aligned_cols=127 Identities=9% Similarity=-0.071 Sum_probs=62.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHc
Q 012577 269 AAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIG--PLAWDALVKLHVE 346 (460)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~ 346 (460)
.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++..
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 34444555555555555555554432 222233444445555566666666655332211 110 1244555555666
Q ss_pred CCChhhHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 347 GGEVEKADSILLKAQQQNKFKPM--FSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
.|++++|++.|++... .+..|. .........++.+.|+.++|..+|+++...
T Consensus 184 LG~~~eAl~~l~~a~~-g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 184 LALFTEAERRLTEAND-SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TTCHHHHHHHHHHHHT-STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 6666666666665542 111132 123344445556666666666666666654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.6e-06 Score=67.03 Aligned_cols=103 Identities=10% Similarity=-0.021 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012577 265 DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLH 344 (460)
Q Consensus 265 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 344 (460)
..+..+...+.+.|++++|+..|++..+.... +...|..+..+|...|++++|...++...+.. +.+...|..+..+|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34556666677777777777777777665433 56667777777777777777777777777653 44566777777777
Q ss_pred HcCCChhhHHHHHHHHHHhCCCCcC
Q 012577 345 VEGGEVEKADSILLKAQQQNKFKPM 369 (460)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~ 369 (460)
...|++++|.+.|+++.+..+-.++
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHccCHHHHHHHHHHHHHhCCCchH
Confidence 7777777777777777665544443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.6e-06 Score=62.94 Aligned_cols=107 Identities=11% Similarity=0.020 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC-----HHHHH
Q 012577 300 KHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM-----FSSYM 374 (460)
Q Consensus 300 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ 374 (460)
..+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|++.+++.++..+-.+. ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345556666666777777777777666653 345666666777777777777777777666553221111 13455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH
Q 012577 375 LIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQ 409 (460)
Q Consensus 375 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 409 (460)
.+..++...|++++|++.|++..+. .||+.+..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 6666677777777777777776664 34544433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.54 E-value=3.4e-06 Score=75.12 Aligned_cols=131 Identities=11% Similarity=-0.013 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 264 LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLS--------------TKHYTALLKVYADHKMLSKGKDLVKQMAESG 329 (460)
Q Consensus 264 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 329 (460)
...+..+...|.+.|++++|...|++..+...... ...|..+..+|.+.|++++|...++...+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34566677777777888888888877776543311 4778888888888888888888888888864
Q ss_pred CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 012577 330 CHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHST-EKIFHRMR 397 (460)
Q Consensus 330 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 397 (460)
+.+...+..+..+|...|++++|...|+++.+..+ .+...+..+..++.+.|+.++| ...|+.|.
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP--NNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55778888888888888888888888888877653 3456777788888888888887 44666664
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=5.4e-06 Score=60.66 Aligned_cols=109 Identities=6% Similarity=-0.071 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 012577 299 TKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMD 378 (460)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (460)
...+..+...+...|++++|...++...... +.+...+..+...+...|++++|...++++.+..+ .+...+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--DWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc--ccHHHHHHHHH
Confidence 3445556666666666777766666666542 33556666666666666777777777766665432 23455666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 012577 379 QYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTL 411 (460)
Q Consensus 379 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 411 (460)
++...|++++|.+.+++..+.+ +.+...+..+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 112 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGL 112 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 6777777777777777766653 3344444433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.54 E-value=2.9e-06 Score=64.89 Aligned_cols=95 Identities=13% Similarity=0.016 Sum_probs=50.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 012577 267 CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVE 346 (460)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 346 (460)
+..+...+.+.|++++|...|+......+. +...|..+..+|...|++++|...|+...+.. +.++..+..+..+|..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 334444555555555555555555544332 44455555555555555555555555555542 3344555555555555
Q ss_pred CCChhhHHHHHHHHHHh
Q 012577 347 GGEVEKADSILLKAQQQ 363 (460)
Q Consensus 347 ~~~~~~a~~~~~~~~~~ 363 (460)
.|++++|.+.|+.+.+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 55555555555555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.53 E-value=9.5e-06 Score=68.83 Aligned_cols=125 Identities=14% Similarity=-0.012 Sum_probs=66.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCH----HHHHHHHHHHHcc
Q 012577 202 ILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWL----DVCMAAIEAWGKL 277 (460)
Q Consensus 202 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~li~~~~~~ 277 (460)
.+...+...|++++|.+.|+.+...+ |+......+...+.+.+++++|+..|+.....++. ..+..+..++...
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 34444555566666666655554433 22223333444555556666666555544433322 2345555666666
Q ss_pred CCHHHHHHHHHHHHhcccCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 278 NKVEEAEAVFKRMSKTWKKLS--TKHYTALLKVYADHKMLSKGKDLVKQMAES 328 (460)
Q Consensus 278 ~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 328 (460)
|++++|+..|++.......|. .........++.+.|+.++|...|+++...
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 666666666666653322132 224455556666666666666666666664
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.4e-06 Score=66.68 Aligned_cols=100 Identities=12% Similarity=-0.013 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012577 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIM 377 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 377 (460)
+...+..+...+.+.|++++|...|+.+.... +.+...|..+..+|.+.|++++|...|+++....+- +...+..+.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg 93 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN--EPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CcHHHHHHH
Confidence 44566777888999999999999999999874 568889999999999999999999999999887643 445778889
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 012577 378 DQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
.+|...|++++|.+.|++..+..
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999998763
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.48 E-value=4e-06 Score=74.67 Aligned_cols=137 Identities=9% Similarity=-0.053 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHc
Q 012577 197 SSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGK 276 (460)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~ 276 (460)
...+..+...+.+.|++++|+..|++..+........ ..+.+..+- ......|..+..+|.+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-------------~~~~~~~~~-----~~~~~~~~nla~~~~~ 208 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-------------SNEEAQKAQ-----ALRLASHLNLAMCHLK 208 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-------------CSHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-------------ChHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 4556666666667777777777776666543221100 000000000 0012234444455555
Q ss_pred cCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhH
Q 012577 277 LNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKA 353 (460)
Q Consensus 277 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 353 (460)
.|++++|+..+++..+..+. +...|..+..+|...|++++|...|+.+.+.. +.+...+..+..++.+.|+.++|
T Consensus 209 ~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 209 LQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544322 44455555555555555555555555555542 23444555555555555555555
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.2e-05 Score=59.92 Aligned_cols=97 Identities=9% Similarity=-0.017 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012577 300 KHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQ 379 (460)
Q Consensus 300 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (460)
..+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|...++++.+..+ .+...|..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--NFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CcHHHHHHHHHH
Confidence 345556666666677777777777666653 44566666677777777777777777776665542 234566666667
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 012577 380 YAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 380 ~~~~g~~~~a~~~~~~m~~~ 399 (460)
+...|++++|.+.|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777766654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=6.5e-07 Score=73.09 Aligned_cols=96 Identities=19% Similarity=0.089 Sum_probs=47.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLS---------------TKHYTALLKVYADHKMLSKGKDLVKQMAESGC 330 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 330 (460)
.+..+...+...|++++|...|++..+...... ...+..+..+|...|++++|...++...+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 345555566666666666666666655322100 1344444444555555555555555544432
Q ss_pred CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 331 HIGPLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 331 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
+.+...+..+..+|...|++++|.+.|+++.+
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 23344444444445555555555555554444
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.44 E-value=8.8e-06 Score=75.32 Aligned_cols=124 Identities=8% Similarity=-0.072 Sum_probs=66.6
Q ss_pred HHccCCHHHHHHHHHHHHhc----ccCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC---CCCHHHHHHHHHH
Q 012577 274 WGKLNKVEEAEAVFKRMSKT----WKKL-STKHYTALLKVYADHKMLSKGKDLVKQMAES--GC---HIGPLAWDALVKL 343 (460)
Q Consensus 274 ~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~---~~~~~~~~~li~~ 343 (460)
+...|+.+.|..++...... +..+ -..++..+...|...|++++|..+++.+... +. +....++..++..
T Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (434)
T 4b4t_Q 105 EQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKV 184 (434)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 33455666666666554431 1111 1345556666667777777777766665442 11 1113456666666
Q ss_pred HHcCCChhhHHHHHHHHHHhCCCCcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012577 344 HVEGGEVEKADSILLKAQQQNKFKPM-----FSSYMLIMDQYAKRGDIHSTEKIFHRMR 397 (460)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 397 (460)
|...|++++|..++++......-.++ ...+..+...+...|++++|...|.+..
T Consensus 185 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 185 YHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 77777777777776665432211111 1334445555566677777766666554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00028 Score=61.66 Aligned_cols=248 Identities=7% Similarity=-0.086 Sum_probs=126.4
Q ss_pred hhHHHHHHHH---HHcCCCH-HHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-----------hHHHHHHHHHHHcC
Q 012577 93 EVVYRTLLAN---CVAGNNV-KKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-----------KKVADVLLLMEKEN 157 (460)
Q Consensus 93 ~~~~~~ll~~---~~~~~~~-~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-----------~~a~~~~~~~~~~~ 157 (460)
+..|..+... ..+.|.+ ++|+++++.++..+. -+...|+.--..+...+. .++..+++.+....
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 3345444433 2345554 478888888887642 133334433222222111 34445555555443
Q ss_pred CCCCHHHHHHHHHHHhhcC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-hHHHHHHHHHHHhCCCCCCHHH
Q 012577 158 VKLTQFSYKILIDIKGQSN--DLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR-KEKAEAMLKEMEGDNLKEHRWT 234 (460)
Q Consensus 158 ~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~ 234 (460)
+-+..+|+.-...+.+.+ ++++++++++.+.+.. +-|..+|+.-...+...|. ++++++.+..+.+.++. |...
T Consensus 105 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SA 181 (331)
T 3dss_A 105 -PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSS 181 (331)
T ss_dssp -TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHH
T ss_pred -CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHH
Confidence 445555555555555555 3566666666666554 4455555555555555555 35666666666655433 4445
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhc--
Q 012577 235 CRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADH-- 312 (460)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-- 312 (460)
|+.....+...+....+ ++ ..-...+.++++++.+.......+. |...|+.+-..+.+.
T Consensus 182 W~~R~~ll~~l~~~~~~----------~~--------~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~ 242 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDS----------GP--------QGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSG 242 (331)
T ss_dssp HHHHHHHHHHHSCCC------------------------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHhhhcccc----------cc--------ccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccC
Confidence 54444433332110000 00 0000013356666777666665444 666666555554444
Q ss_pred ---------CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHH---HHHcCCChhhHHHHHHHHHHhCC
Q 012577 313 ---------KMLSKGKDLVKQMAESGCHIGP-LAWDALVK---LHVEGGEVEKADSILLKAQQQNK 365 (460)
Q Consensus 313 ---------g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~---~~~~~~~~~~a~~~~~~~~~~~~ 365 (460)
+.++++++.++++.+.. ||. -.+..++. .....|..+++..++.++.+.++
T Consensus 243 ~~~~~~~~~~~l~~el~~~~elle~~--pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 243 RCELSVEKSTVLQSELESCKELQELE--PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred ccccchHHHHHHHHHHHHHHHHHhhC--cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 34678888888888753 443 22222221 22245677788888888877654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=9.7e-07 Score=72.03 Aligned_cols=144 Identities=7% Similarity=-0.082 Sum_probs=105.7
Q ss_pred HHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----------------H
Q 012577 272 EAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGP----------------L 335 (460)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~ 335 (460)
......|+++.+.+.++.-..... .....+..+...+...|++++|...|++..+.. +.+. .
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ----------CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHH
Confidence 334445556666655543322211 144567788889999999999999999998852 2232 7
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 012577 336 AWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAY 415 (460)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 415 (460)
.+..+..+|.+.|++++|...++++.+..+ .+...+..+..+|...|++++|.+.|++..+.. +.+...+..+..++
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDK--NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 888899999999999999999999988653 456788889999999999999999999999875 55777888888887
Q ss_pred HhcCC
Q 012577 416 INAKT 420 (460)
Q Consensus 416 ~~~g~ 420 (460)
...++
T Consensus 167 ~~~~~ 171 (198)
T 2fbn_A 167 NKLKE 171 (198)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77665
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.3e-05 Score=72.48 Aligned_cols=191 Identities=8% Similarity=-0.032 Sum_probs=113.5
Q ss_pred HHHhcCc-hHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHhhcCChhHHHHHHHHHHhC-CCCCCH-
Q 012577 137 LYKRLDK-KKVADVLLLMEKENVKLT----------------QFSYKILIDIKGQSNDLTGMDQVVEAMKSE-GIEPDS- 197 (460)
Q Consensus 137 ~~~~~~~-~~a~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~- 197 (460)
.+.+.|+ .+|.+.|....+...... ...+..+...|...|++++|.+.+..+... +..++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 4455566 778887777776532111 123566777788888888888877776532 111222
Q ss_pred ---HHHHHHHHHHHhCCChHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhcc-------CC
Q 012577 198 ---STQAILAKHYVSGGRKEKAEAMLKEMEG----DNLKE-HRWTCRLLLPLYAELGKADQVARIWKLCES-------NP 262 (460)
Q Consensus 198 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~ 262 (460)
.+.+.+...+...|++++|..+++.... .+..+ -..++..+...|...|++++|..+++.+.. .+
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 1223333344456777888777776643 22222 234566777777788888888777765432 11
Q ss_pred -CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc--cC-c-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 263 -WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTW--KK-L-S--TKHYTALLKVYADHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 263 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~-p-~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 327 (460)
....+..++..|...|++++|..+++...... .. | . ...+..+...+...|++++|...|.+..+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 23356777777777888888887777665421 11 1 1 23455556666677777777777666654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.4e-06 Score=60.48 Aligned_cols=99 Identities=12% Similarity=-0.067 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012577 300 KHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQ 379 (460)
Q Consensus 300 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (460)
..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.++++.+..+...+...+..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 344555555556666666666666655542 3345555556666666666666666666655443210134555556666
Q ss_pred HHhc-CCHHHHHHHHHHHHHc
Q 012577 380 YAKR-GDIHSTEKIFHRMRQV 399 (460)
Q Consensus 380 ~~~~-g~~~~a~~~~~~m~~~ 399 (460)
+.+. |++++|.+.+++....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 6666 6666666666666554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.40 E-value=1e-05 Score=60.41 Aligned_cols=97 Identities=12% Similarity=0.088 Sum_probs=69.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESG--CHIG----PLAWDA 339 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~----~~~~~~ 339 (460)
.+..+...+.+.|++++|+..|++..+..+. +...|..+..+|...|++++|+..++..++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4556677777788888888888877775443 56777778888888888888888887776532 1111 235666
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHh
Q 012577 340 LVKLHVEGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 340 li~~~~~~~~~~~a~~~~~~~~~~ 363 (460)
+..++...|++++|++.|++..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 777788888888888888887664
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.4e-05 Score=60.45 Aligned_cols=99 Identities=5% Similarity=-0.059 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012577 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIM 377 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 377 (460)
+...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...++++.+..+ .+...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG--QSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--hhHHHHHHHH
Confidence 45556666666666666666666666666553 33456666666666666666666666666655432 2345566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 012577 378 DQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
.++...|++++|...|++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 6666666666666666666543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.40 E-value=6.5e-06 Score=59.58 Aligned_cols=100 Identities=10% Similarity=-0.020 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 012577 264 LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHI--GPLAWDALV 341 (460)
Q Consensus 264 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li 341 (460)
...+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...++...+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 345566777788888899999988888876443 67788888889999999999999999988863 44 578888889
Q ss_pred HHHHcC-CChhhHHHHHHHHHHhCC
Q 012577 342 KLHVEG-GEVEKADSILLKAQQQNK 365 (460)
Q Consensus 342 ~~~~~~-~~~~~a~~~~~~~~~~~~ 365 (460)
..+.+. |++++|.+.+++.....+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhccc
Confidence 999999 999999999998876543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=2e-05 Score=57.46 Aligned_cols=98 Identities=8% Similarity=-0.051 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012577 265 DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLH 344 (460)
Q Consensus 265 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 344 (460)
..+..+...+...|++++|...|+......+. +...+..+...+...|++++|...++...+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34566677777788888888888887765432 66777778888888888888888888887763 44677788888888
Q ss_pred HcCCChhhHHHHHHHHHHhC
Q 012577 345 VEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~ 364 (460)
...|++++|.+.+++..+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 88888888888888876544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.8e-05 Score=58.87 Aligned_cols=97 Identities=11% Similarity=-0.002 Sum_probs=76.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHV 345 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (460)
.+..+...+.+.|++++|...|++..+..+. +...|..+..+|.+.|++++|...++...+.. +.+...+..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 4566677778888888888888888776443 67788888888888888888888888888764 446778888888888
Q ss_pred cCCChhhHHHHHHHHHHhC
Q 012577 346 EGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~ 364 (460)
..|++++|...|+++.+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 8888888888888877643
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.1e-05 Score=63.34 Aligned_cols=100 Identities=13% Similarity=0.044 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012577 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIM 377 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 377 (460)
+...+..+...+...|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..|+++.+..+ .+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP--KYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 45678888999999999999999999999874 55789999999999999999999999999988753 3467889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 012577 378 DQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
.+|.+.|++++|.+.|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999864
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.2e-05 Score=60.17 Aligned_cols=108 Identities=9% Similarity=-0.039 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHH
Q 012577 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIG----PLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSY 373 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 373 (460)
+...+..+...+...|++++|...|+...+. .|+ ...+..+...|...|++++|...+++..+..+ .+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG--GDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS--CCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc--cCHHHH
Confidence 3445555566666666666666666666553 233 45566666666666666666666666655432 234555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 012577 374 MLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQT 410 (460)
Q Consensus 374 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 410 (460)
..+..++...|++++|...|++..+.. +.+...+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 138 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEA 138 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHH
Confidence 666666666677777777776666653 333444433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.2e-05 Score=60.82 Aligned_cols=100 Identities=15% Similarity=-0.050 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012577 263 WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVK 342 (460)
Q Consensus 263 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 342 (460)
+...+..+...+...|++++|...|+......+. +...|..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 4556777777788888888888888887776443 56778888888888888888888888888764 446778888888
Q ss_pred HHHcCCChhhHHHHHHHHHHhC
Q 012577 343 LHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
+|...|++++|...|+++.+..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHC
Confidence 8888888888888888876643
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.37 E-value=1.2e-05 Score=59.95 Aligned_cols=112 Identities=13% Similarity=0.036 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCC-cC----HHHHH
Q 012577 300 KHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFK-PM----FSSYM 374 (460)
Q Consensus 300 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~----~~~~~ 374 (460)
..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++++....+-. ++ ...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345555666666666666666666666543 3455566666666666666666666666665543211 11 44566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 012577 375 LIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQA 414 (460)
Q Consensus 375 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 414 (460)
.+..++.+.|++++|.+.|+++.+.. |+...+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 66666777777777777777776643 344444444433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.34 E-value=9.8e-06 Score=63.13 Aligned_cols=134 Identities=11% Similarity=-0.044 Sum_probs=86.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKK-LS----TKHYTALLKVYADHKMLSKGKDLVKQMAESGC-HIG----PL 335 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~ 335 (460)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...++...+..- ..+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3455566666667777777766665543111 11 13566677777788888888888777654210 011 34
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhCCCC----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 336 AWDALVKLHVEGGEVEKADSILLKAQQQNKFK----PMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
.+..+...+...|++++|.+.+++..+...-. .....+..+...+...|++++|.+.+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 56677777888888888888888776432111 11345667778888889999999988887653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.32 E-value=9.7e-06 Score=60.54 Aligned_cols=108 Identities=11% Similarity=-0.004 Sum_probs=71.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGC--HIG----PLAWDA 339 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 339 (460)
.+..+...+...|++++|...|+...+..+ .+...+..+...+...|++++|...++.+.+... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 455566667777777777777777766543 2566677777777777888888777777766421 112 566777
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012577 340 LVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIM 377 (460)
Q Consensus 340 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 377 (460)
+...+...|++++|.+.|+++.+.. |+......+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~l~ 119 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH---RTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC---CCHHHHHHHH
Confidence 7777888888888888888776643 3444444433
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.31 E-value=2e-06 Score=63.27 Aligned_cols=88 Identities=13% Similarity=0.043 Sum_probs=46.4
Q ss_pred cCCHHHHHHHHHHHHhcc--cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHH
Q 012577 277 LNKVEEAEAVFKRMSKTW--KKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKAD 354 (460)
Q Consensus 277 ~~~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 354 (460)
.|++++|+..|++..+.+ -+.+...+..+...|...|++++|...+++..+.. +-+..++..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 355555666666555542 11133455555566666666666666666665542 334555555566666666666666
Q ss_pred HHHHHHHHhCC
Q 012577 355 SILLKAQQQNK 365 (460)
Q Consensus 355 ~~~~~~~~~~~ 365 (460)
..+++..+..+
T Consensus 82 ~~~~~al~~~p 92 (117)
T 3k9i_A 82 ELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhCC
Confidence 66665555443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=9.4e-06 Score=60.03 Aligned_cols=95 Identities=8% Similarity=-0.069 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012577 302 YTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYA 381 (460)
Q Consensus 302 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (460)
+..+...+.+.|++++|...++...+.. +.+...|..+..++...|++++|+..|+++.+..+ .+...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHH
Confidence 3444555566666666666666666542 33555666666666666666666666666655442 23345555666666
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 012577 382 KRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 382 ~~g~~~~a~~~~~~m~~~ 399 (460)
+.|++++|+..+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=6.6e-05 Score=57.38 Aligned_cols=61 Identities=10% Similarity=-0.100 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 301 HYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 301 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
.+..+...|...|++++|...++...+.. +.+...+..+..++...|++++|...|++..+
T Consensus 67 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 67 LHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33334444444444444444444443331 22333344444444444444444444444433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=2.1e-05 Score=58.09 Aligned_cols=97 Identities=13% Similarity=-0.010 Sum_probs=80.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHV 345 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (460)
.+..+...+.+.|++++|...|+...+..+. +...|..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3556677888899999999999999886554 77888889999999999999999999998874 446788888999999
Q ss_pred cCCChhhHHHHHHHHHHhC
Q 012577 346 EGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~ 364 (460)
..|++++|...++++.+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999887643
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.21 E-value=7.6e-06 Score=76.54 Aligned_cols=119 Identities=8% Similarity=-0.063 Sum_probs=77.5
Q ss_pred HHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChh
Q 012577 272 EAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVE 351 (460)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 351 (460)
..+.+.|++++|.+.|++..+..+. +...|..+..+|.+.|++++|...+++..+.. +.+...+..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3455667777777777777765433 56677777777777778888877777777753 445677777777777778888
Q ss_pred hHHHHHHHHHHhCCCCcCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 012577 352 KADSILLKAQQQNKFKPMFSSYMLIMDQ--YAKRGDIHSTEKIFH 394 (460)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 394 (460)
+|.+.|+++.+..+-.++ .+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~~~--~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKD--AKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTT--HHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888887777766543333 33333333 667777777777777
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00013 Score=54.29 Aligned_cols=94 Identities=7% Similarity=-0.066 Sum_probs=47.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC-HHHHHHHHHHH
Q 012577 305 LLKVYADHKMLSKGKDLVKQMAESGCHIGP---LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM-FSSYMLIMDQY 380 (460)
Q Consensus 305 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 380 (460)
+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...|+++.+..+-.+. ...+..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3444455555555555555555432 1122 34445555555555555555555555544322111 23344455555
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 012577 381 AKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 381 ~~~g~~~~a~~~~~~m~~~ 399 (460)
.+.|++++|...|+++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5556666666666655554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.19 E-value=8.1e-05 Score=55.39 Aligned_cols=94 Identities=12% Similarity=0.031 Sum_probs=69.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcccCcCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 012577 269 AAIEAWGKLNKVEEAEAVFKRMSKTWKKLST---KHYTALLKVYADHKMLSKGKDLVKQMAESGCHIG---PLAWDALVK 342 (460)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~ 342 (460)
.+...+...|++++|...|+...+..+. +. ..+..+..++...|++++|...++.+.+.. +.+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 3455667778888888888887765432 23 467777788888888888888888887753 233 566777888
Q ss_pred HHHcCCChhhHHHHHHHHHHhC
Q 012577 343 LHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
++...|++++|...|+++.+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 8888888888888888887765
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.17 E-value=4e-05 Score=59.57 Aligned_cols=23 Identities=17% Similarity=-0.028 Sum_probs=9.9
Q ss_pred HHHHHHHHcCCChhhHHHHHHHH
Q 012577 338 DALVKLHVEGGEVEKADSILLKA 360 (460)
Q Consensus 338 ~~li~~~~~~~~~~~a~~~~~~~ 360 (460)
..+...+...|++++|.+.+++.
T Consensus 133 ~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 133 WSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHH
Confidence 33344444444444444444443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.1e-05 Score=60.61 Aligned_cols=65 Identities=5% Similarity=0.012 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 334 PLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
...|..+..+|.+.|++++|+..++++++..+ .+...|..+..+|...|++++|...|++..+..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREE--TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 35566666667777777777777777666542 234566666677777777777777777776653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.12 E-value=2.7e-05 Score=72.79 Aligned_cols=116 Identities=14% Similarity=-0.092 Sum_probs=61.3
Q ss_pred HHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 012577 171 IKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQ 250 (460)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 250 (460)
.+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|+..+++..+.... +..++..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 4455566666666666655542 334556666666666666666666666666654322 44555566666666666666
Q ss_pred HHHHHHHhcc-CC-CHHHHHHHHHH--HHccCCHHHHHHHHH
Q 012577 251 VARIWKLCES-NP-WLDVCMAAIEA--WGKLNKVEEAEAVFK 288 (460)
Q Consensus 251 a~~~~~~~~~-~~-~~~~~~~li~~--~~~~~~~~~a~~~~~ 288 (460)
|...+++... .| +...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666655443 22 22233333333 555566666666665
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.08 E-value=8.8e-05 Score=69.00 Aligned_cols=130 Identities=12% Similarity=0.020 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 012577 265 DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLS--------------TKHYTALLKVYADHKMLSKGKDLVKQMAESGC 330 (460)
Q Consensus 265 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 330 (460)
..+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|...++.+++..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 3566777778888888888888888776533211 4677788888888888888888888888763
Q ss_pred CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 012577 331 HIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEK-IFHRMR 397 (460)
Q Consensus 331 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~ 397 (460)
+.+...|..+..+|...|++++|...|+++.+..+- +...+..+..++.+.|+.+++.+ .++.|.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~--~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ--NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888888765432 33466677777777777776653 444443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00012 Score=57.08 Aligned_cols=97 Identities=9% Similarity=0.048 Sum_probs=71.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhc--------c---------cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 267 CMAAIEAWGKLNKVEEAEAVFKRMSKT--------W---------KKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESG 329 (460)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~--------~---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 329 (460)
+......+.+.|++++|+..|...... . .+.+...|..+..+|.+.|++++|...++..++..
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 444555566666666666666655543 0 01134678888889999999999999999988874
Q ss_pred CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhC
Q 012577 330 CHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 330 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
+.+...|..+..+|...|++++|...|++..+..
T Consensus 94 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 94 -ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 5578888889999999999999999999887754
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.04 E-value=8.3e-05 Score=66.93 Aligned_cols=120 Identities=11% Similarity=-0.094 Sum_probs=62.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcc---------------cCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 012577 267 CMAAIEAWGKLNKVEEAEAVFKRMSKTW---------------KKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCH 331 (460)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~~---------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 331 (460)
+..+...+.+.|++++|+..|++..+.- .+.+...|..+..+|.+.|++++|...+++..+.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 4555666666677777777666665410 01123445555555555666666666665555542 2
Q ss_pred CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 012577 332 IGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHST 389 (460)
Q Consensus 332 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 389 (460)
.+...+..+..+|...|++++|.+.|+++.+..+ .+...+..+..++.+.++.+++
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P--~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP--EDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555666666665555554432 1233444444444444444433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.00 E-value=8.2e-05 Score=69.20 Aligned_cols=138 Identities=11% Similarity=-0.019 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHc
Q 012577 197 SSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGK 276 (460)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~ 276 (460)
...|..+...+.+.|++++|+..|++..+....... + ..+...+ .. ......|..+..+|.+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~~-~~----~~~~~~~~nla~~~~~ 329 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L-----------SEKESKA-SE----SFLLAAFLNLAMCYLK 329 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C-----------CHHHHHH-HH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C-----------ChHHHHH-HH----HHHHHHHHHHHHHHHH
Confidence 456777788888888888888888887764222110 0 0000000 00 0012345555666666
Q ss_pred cCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHH
Q 012577 277 LNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKAD 354 (460)
Q Consensus 277 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 354 (460)
.|++++|+..+++.++.... +...|..+..+|...|++++|...|+.+.+.. +.+...+..+..++.+.++.+++.
T Consensus 330 ~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 330 LREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666654332 45566666666666666666666666666542 234445555556666666555554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.3e-05 Score=57.51 Aligned_cols=104 Identities=11% Similarity=0.035 Sum_probs=76.4
Q ss_pred hcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 012577 311 DHKMLSKGKDLVKQMAESG--CHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHS 388 (460)
Q Consensus 311 ~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 388 (460)
..|++++|...|++..+.+ -+.+...+..+...|...|++++|...|+++.+..+- +...+..+..++.+.|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN--HQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHcCCHHH
Confidence 4688999999999998864 2335678888999999999999999999999887643 45678889999999999999
Q ss_pred HHHHHHHHHHcC-CCccHHHHHHHHHHHH
Q 012577 389 TEKIFHRMRQVG-YVARFKQFQTLVQAYI 416 (460)
Q Consensus 389 a~~~~~~m~~~~-~~~~~~~~~~l~~~~~ 416 (460)
|+..+++..+.. -.|+...|...+..|.
T Consensus 80 A~~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 999999988763 1223333444444443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.96 E-value=5.1e-05 Score=55.35 Aligned_cols=80 Identities=15% Similarity=0.100 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 012577 282 EAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQ 361 (460)
Q Consensus 282 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 361 (460)
.|+..|+...+..+. +...+..+...|...|++++|...++...+.. +.+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555555554332 45556666666666666666666666666543 3345556666666666666666666666655
Q ss_pred Hh
Q 012577 362 QQ 363 (460)
Q Consensus 362 ~~ 363 (460)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.94 E-value=9.9e-05 Score=66.43 Aligned_cols=94 Identities=10% Similarity=-0.180 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 012577 164 SYKILIDIKGQSNDLTGMDQVVEAMKSE---------------GIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNL 228 (460)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 228 (460)
.+..+...+.+.|++++|++.|++..+. --+.+..+|..+..+|.+.|++++|+..+++..+...
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 4666777788888888888888877651 0012234555555555566666666666655555432
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 012577 229 KEHRWTCRLLLPLYAELGKADQVARIWKLC 258 (460)
Q Consensus 229 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 258 (460)
.+...+..+..+|...|++++|...|+..
T Consensus 305 -~~~~a~~~lg~~~~~~g~~~eA~~~l~~A 333 (370)
T 1ihg_A 305 -SNTKALYRRAQGWQGLKEYDQALADLKKA 333 (370)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 13344444444555555555554444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00094 Score=63.67 Aligned_cols=170 Identities=9% Similarity=-0.101 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--
Q 012577 179 TGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR----------KEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELG-- 246 (460)
Q Consensus 179 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 246 (460)
++|++.++++.... +-+..+|+.--.++...|+ +++++..++.+.+...+ +..+|..-..++.+.+
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 34455555555443 2334444444444443333 55555555555554433 4445555555555555
Q ss_pred ChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccC-CHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhc-----------
Q 012577 247 KADQVARIWKLCES-NP-WLDVCMAAIEAWGKLN-KVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADH----------- 312 (460)
Q Consensus 247 ~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------- 312 (460)
+++++...++.+.. +| +...|+.-...+.+.| .++++++.++++.+..+. |...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccccc
Confidence 44555555555443 22 3445555444555555 566666666666665544 566666655555442
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhh
Q 012577 313 ---KMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEK 352 (460)
Q Consensus 313 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 352 (460)
+.++++.+.++.+.... +-|...|..+-..+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 45788888888888764 5578888888888887777444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00063 Score=64.86 Aligned_cols=170 Identities=5% Similarity=-0.148 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC----------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC--
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSND----------LTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGG-- 211 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~-- 211 (460)
++|.+.++.+.... +-+...|+.--.++...|+ ++++++.++.+.+.. +.+..+|+.-...+.+.+
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 44455555555442 2333444444444444444 677777777776654 456666766666666666
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHcc-----------
Q 012577 212 RKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELG-KADQVARIWKLCES-NP-WLDVCMAAIEAWGKL----------- 277 (460)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~----------- 277 (460)
++++++..++++.+.+.. +..+|+.-..++.+.| .++++.+.++.+.. +| +...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 557777777777776544 5666666666666666 66777777666544 33 455565554444432
Q ss_pred ---CCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHH
Q 012577 278 ---NKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSK 317 (460)
Q Consensus 278 ---~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 317 (460)
+.++++++.++......+. |...|..+-..+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 4578899999988887654 77888888888887776444
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.92 E-value=6.3e-05 Score=66.90 Aligned_cols=145 Identities=12% Similarity=0.037 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012577 163 FSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLY 242 (460)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 242 (460)
..+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 45667788888999999999999987765 344331 112222333322211 12455566666
Q ss_pred HhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHH-HHhcCCHHHHH
Q 012577 243 AELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKV-YADHKMLSKGK 319 (460)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~ 319 (460)
.+.|++++|...++.... .| +...+..+..+|...|++++|...|+...+..+. +...+..+... ....+..+++.
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665443 33 4456666666666666666666666666654322 33344444333 22344555666
Q ss_pred HHHHHHHH
Q 012577 320 DLVKQMAE 327 (460)
Q Consensus 320 ~~~~~~~~ 327 (460)
..|..|..
T Consensus 320 ~~~~~~l~ 327 (338)
T 2if4_A 320 EMYKGIFK 327 (338)
T ss_dssp --------
T ss_pred HHHHHhhC
Confidence 66666654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00013 Score=55.12 Aligned_cols=108 Identities=18% Similarity=0.059 Sum_probs=43.9
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHH
Q 012577 177 DLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE----LGKADQVA 252 (460)
Q Consensus 177 ~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 252 (460)
++++|.+.|++..+.| .|+.. |...|...+.+++|.+.|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3444555555544444 22222 3333334444444444444444432 22333344444433 33444444
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHh
Q 012577 253 RIWKLCESNPWLDVCMAAIEAWGK----LNKVEEAEAVFKRMSK 292 (460)
Q Consensus 253 ~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~ 292 (460)
.+|+......+...+..+...|.. .+++++|.+.|+...+
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 444433333333333333333333 3344444444443333
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.91 E-value=7.2e-05 Score=69.60 Aligned_cols=94 Identities=10% Similarity=0.009 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcc---------CCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhc-----ccC-c
Q 012577 234 TCRLLLPLYAELGKADQVARIWKLCES---------NPWL-DVCMAAIEAWGKLNKVEEAEAVFKRMSKT-----WKK-L 297 (460)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~-p 297 (460)
+++.|..+|...|++++|..++++... .|++ .+++.|...|...|++++|..++++..+- |.. |
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 344444444455555544444443221 1222 24566666666666666666666655431 211 2
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 298 S-TKHYTALLKVYADHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 298 ~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 327 (460)
+ ..+.+.+..++...+.+.+|..++..+++
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23345555666667777777777777765
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00026 Score=54.10 Aligned_cols=61 Identities=10% Similarity=0.060 Sum_probs=32.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcccCc------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 267 CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKL------ST-----KHYTALLKVYADHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p------~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~ 327 (460)
+......+.+.|++++|+..|++.++..+.. +. ..|..+..++.+.|++++|+..++..++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445556666777777777777666643320 11 1445555555555555555555555444
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.86 E-value=5.1e-05 Score=67.48 Aligned_cols=95 Identities=11% Similarity=-0.005 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHH-
Q 012577 301 HYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQ- 379 (460)
Q Consensus 301 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~- 379 (460)
.|..+..+|.+.|++++|...++..++.. +.+...|..+..+|...|++++|...|+++.+..+- +...+..+...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~--~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD--DKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHH
Confidence 44445555555555555555555555542 234455555555555555555555555555433211 11222333222
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 012577 380 YAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 380 ~~~~g~~~~a~~~~~~m~~ 398 (460)
....+..+.+...|++|..
T Consensus 309 ~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 1223444555555555544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00044 Score=52.24 Aligned_cols=110 Identities=8% Similarity=-0.085 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHc----cCCHHHHHHHH
Q 012577 212 RKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGK----LNKVEEAEAVF 287 (460)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~ 287 (460)
++++|+..|++..+.|. |+.. +...|...+.+++|.++|+......+...+..+...|.. .+++++|.+.|
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 45666677766666652 2222 445555555555555555555545555555555555554 45555555555
Q ss_pred HHHHhcccCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 012577 288 KRMSKTWKKLSTKHYTALLKVYAD----HKMLSKGKDLVKQMAESG 329 (460)
Q Consensus 288 ~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 329 (460)
++..+.| ++..+..|...|.. .+++++|...|+...+.|
T Consensus 85 ~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 85 SKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5554442 33444444444444 445555555555554443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.81 E-value=3.5e-05 Score=55.62 Aligned_cols=94 Identities=9% Similarity=-0.139 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC-C----HHHH
Q 012577 161 TQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKE-H----RWTC 235 (460)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~ 235 (460)
+...+..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|+..+++..+..... + ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 44567777888888888888888888887664 4567788888888888888888888888887754321 1 3344
Q ss_pred HHHHHHHHhcCChhHHHHHH
Q 012577 236 RLLLPLYAELGKADQVARIW 255 (460)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~ 255 (460)
..+..++...|+.+.+...+
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHH
Confidence 45555555555555544433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00068 Score=51.82 Aligned_cols=100 Identities=7% Similarity=-0.087 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------CH-----HHHHHHHHHHHcCCChhhHHHHHHHHHHh----C
Q 012577 300 KHYTALLKVYADHKMLSKGKDLVKQMAESGCHI------GP-----LAWDALVKLHVEGGEVEKADSILLKAQQQ----N 364 (460)
Q Consensus 300 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~ 364 (460)
..+......+.+.|++++|...|+..++..-.. +. ..|..+..++.+.|++++|+..+++.++. .
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 445667778889999999999999998853110 22 38899999999999999999999999875 0
Q ss_pred CCCcC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 365 KFKPM-FSSY----MLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 365 ~~~~~-~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
.+.|+ ...| .....++...|++++|+..|++..+.
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 11343 4567 78888999999999999999998864
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00019 Score=66.83 Aligned_cols=119 Identities=13% Similarity=0.059 Sum_probs=73.8
Q ss_pred hcCChhHHHHHHHHhcc---------CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhc-----cc-Cc-CHHHHHHHH
Q 012577 244 ELGKADQVARIWKLCES---------NPW-LDVCMAAIEAWGKLNKVEEAEAVFKRMSKT-----WK-KL-STKHYTALL 306 (460)
Q Consensus 244 ~~~~~~~a~~~~~~~~~---------~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~p-~~~~~~~li 306 (460)
..|++++|..++++... .|+ ..+++.|...|...|++++|..++++.++. |. .| ...+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45566666555554322 222 337899999999999999999999887642 21 12 235677888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 307 KVYADHKMLSKGKDLVKQMAES---GCHIG----PLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 307 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
..|...|++++|..++++..+- -+.|+ ..+...+-.++...+.+++|..++..+.+
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887776531 01122 22334444455555555666665555543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00021 Score=50.47 Aligned_cols=63 Identities=16% Similarity=0.026 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 299 TKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
...+..+...|...|++++|...|+...+.. +.+...|..+..+|...|++++|.+.|++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444455555555555555555555555442 22344555555555555555555555555443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00055 Score=46.95 Aligned_cols=80 Identities=18% Similarity=0.199 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 012577 335 LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQA 414 (460)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 414 (460)
..+..+...+...|++++|...+++..+..+ .+...+..+..++.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3444555555555666666666655554432 233455555556666666666666666665543 3344455555444
Q ss_pred HHh
Q 012577 415 YIN 417 (460)
Q Consensus 415 ~~~ 417 (460)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00044 Score=50.19 Aligned_cols=76 Identities=16% Similarity=0.172 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012577 180 GMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKL 257 (460)
Q Consensus 180 ~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (460)
.|++.|++..+.. +.+...+..+...|...|++++|+..|++..+... .+...+..+..+|...|++++|...|+.
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444454444432 23444555555555555555555555555554332 1334444455555555555555555444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0006 Score=46.78 Aligned_cols=81 Identities=9% Similarity=-0.059 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPL 241 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (460)
...+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+.... +...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 4456667777777888888888887777653 345667777777777888888888887777665322 34455555544
Q ss_pred HHh
Q 012577 242 YAE 244 (460)
Q Consensus 242 ~~~ 244 (460)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00073 Score=48.42 Aligned_cols=63 Identities=8% Similarity=-0.096 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 335 LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
..+..+...+...|++++|.+.|+++.+..+ .+...+..+..++.+.|++++|++.+++..+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQP--QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3444455555555555555555555544332 23344455555555555555555555555543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00049 Score=48.54 Aligned_cols=65 Identities=14% Similarity=0.030 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 012577 160 LTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEG 225 (460)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (460)
-+...+..+...|...|++++|++.|++..+.. +.+...|..+..+|...|++++|+..|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356677778888888888888888888887664 44567788888888888888888888887664
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00041 Score=52.94 Aligned_cols=99 Identities=10% Similarity=0.001 Sum_probs=73.6
Q ss_pred HHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCH----------HHHHHHHHhcccCCC-chhHHHHHHHH
Q 012577 34 LRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGL----------QKAESYIQKIPESFR-GEVVYRTLLAN 102 (460)
Q Consensus 34 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~-~~~~~~~ll~~ 102 (460)
..+.+.+++|++.++...... |.+...+..+..++...+++ ++|+..|++..+..| ...+|..+..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 345667888999998888775 56778888888888888765 488888888776655 46778888888
Q ss_pred HHcCC-----------CHHHHHHHHHHHHhCCCCCChhhhHHHHH
Q 012577 103 CVAGN-----------NVKKAEEVFNRMKDKGFPVTSFACNQLLI 136 (460)
Q Consensus 103 ~~~~~-----------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 136 (460)
|...| ++++|++.|++.++. .|+...|...+.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 87764 788888888888876 455555544443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00057 Score=52.10 Aligned_cols=68 Identities=7% Similarity=-0.154 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 012577 278 NKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKML----------SKGKDLVKQMAESGCHIGPLAWDALVKLHVEG 347 (460)
Q Consensus 278 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 347 (460)
+.+++|.+.++...+..+. +...|..+..++...+++ ++|+..|++.++.. +-+..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 4455566666655554433 555555555555555443 34455555544432 22334444444444443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.043 Score=48.22 Aligned_cols=74 Identities=7% Similarity=0.092 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH
Q 012577 331 HIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQ 409 (460)
Q Consensus 331 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 409 (460)
+.++.++..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+.+.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 5567777777666666688888888888887764 66667777777778888888888888887775 35555543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0052 Score=56.17 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=36.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhc-----cc-CcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKT-----WK-KLS-TKHYTALLKVYADHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 327 (460)
+++.+...|...|++++|..++++.++- |. .|+ ..+++.|...|...|++++|..++++..+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4555566666666666666665554431 11 122 34566777777777777777777766543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0047 Score=56.51 Aligned_cols=96 Identities=14% Similarity=0.082 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHhccc--CC----CChhhhHHHHHHHHHhhCHHHHHHHHHhcccC--------CC
Q 012577 26 EIALAMANLRTRRMYGKALQLSEWLETNKK--LD----FIERDYASCLDLIAKLRGLQKAESYIQKIPES--------FR 91 (460)
Q Consensus 26 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~ 91 (460)
.....+..+...|++++|+.+++....... +. ....+++.+...|...|++++|+.++++.... .|
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 344556667788999999999988775421 11 22456788888899999999999988875322 33
Q ss_pred c-hhHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 012577 92 G-EVVYRTLLANCVAGNNVKKAEEVFNRMKD 121 (460)
Q Consensus 92 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 121 (460)
+ ..+++.|...|...|++++|..++++..+
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3 35688899999999999999998887654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0038 Score=43.55 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=26.7
Q ss_pred HHHccCCHHHHHHHHHHHHhcccCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 273 AWGKLNKVEEAEAVFKRMSKTWKKLSTK-HYTALLKVYADHKMLSKGKDLVKQMAES 328 (460)
Q Consensus 273 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~ 328 (460)
.+.+.|++++|...|+...+..+. +.. .+..+..+|...|++++|...|+...+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344445555555555555443222 333 4444555555555555555555555443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.035 Score=48.83 Aligned_cols=141 Identities=7% Similarity=-0.042 Sum_probs=86.4
Q ss_pred CCChhhhHHHHHHHHH--h---hCHHHHHHHHHhcccCCCc-hhHHHHHHHHHH----cCC-C---HHHHHHHHHHHHh-
Q 012577 57 DFIERDYASCLDLIAK--L---RGLQKAESYIQKIPESFRG-EVVYRTLLANCV----AGN-N---VKKAEEVFNRMKD- 121 (460)
Q Consensus 57 ~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~----~~~-~---~~~a~~~~~~m~~- 121 (460)
+.+...|...+++... . .+..+|..+|++..+..|+ ...|..+.-+|. ..+ . .......+.....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 4455666666655432 2 2356788888887766564 233333322221 111 1 1111112222111
Q ss_pred CCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 012577 122 KGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQ 200 (460)
Q Consensus 122 ~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 200 (460)
...+.++.+|..+...+...|+ ++|...+++....+ |+...|..+...+.-.|++++|.+.|++.... .|...+|
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 1224567777777666665677 88888888888875 78778888888888999999999999888876 5676665
Q ss_pred H
Q 012577 201 A 201 (460)
Q Consensus 201 ~ 201 (460)
.
T Consensus 347 ~ 347 (372)
T 3ly7_A 347 Y 347 (372)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0065 Score=55.51 Aligned_cols=87 Identities=11% Similarity=-0.054 Sum_probs=58.1
Q ss_pred cCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHcCCChhhHHHHHHHHHHh-----CCCCcC-HHHHHHHHH
Q 012577 312 HKMLSKGKDLVKQMAES---GCHIG----PLAWDALVKLHVEGGEVEKADSILLKAQQQ-----NKFKPM-FSSYMLIMD 378 (460)
Q Consensus 312 ~g~~~~a~~~~~~~~~~---~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~-~~~~~~l~~ 378 (460)
.|++++|..++++..+. -+.|+ ..+++.+..+|...|++++|..+++++.+- .+-.|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46777777777776542 12222 356777788888888888888877776542 122333 245777888
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 012577 379 QYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 379 ~~~~~g~~~~a~~~~~~m~~ 398 (460)
.|...|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 88888888888888887764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.017 Score=40.02 Aligned_cols=60 Identities=13% Similarity=0.109 Sum_probs=42.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCChhhHHHHHHHHHHhCC
Q 012577 305 LLKVYADHKMLSKGKDLVKQMAESGCHIGPL-AWDALVKLHVEGGEVEKADSILLKAQQQNK 365 (460)
Q Consensus 305 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 365 (460)
....+...|++++|...++.+.+.. +.+.. .+..+..+|...|++++|.+.|+++.+..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3455667777888888887777753 34556 777777777777788888888777776553
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.032 Score=38.35 Aligned_cols=67 Identities=9% Similarity=-0.052 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHcCCC---hhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 332 IGPLAWDALVKLHVEGGE---VEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 332 ~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
.|+..+..+..++...++ .++|..++++..+.++ -+......+...+.+.|++++|+..|+++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp--~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP--YNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 455555555555543333 5666666666665543 233445555566666666666666666666653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.011 Score=54.12 Aligned_cols=62 Identities=16% Similarity=0.045 Sum_probs=33.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhc-----c-cCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKT-----W-KKL-STKHYTALLKVYADHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 327 (460)
+++.+...|...|++++|+.++++.++- | ..| ...+++.|...|...|++++|..++++..+
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444555555555555555555544321 1 112 234566667777777777777776666543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.025 Score=39.84 Aligned_cols=67 Identities=10% Similarity=0.028 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCC-----CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 333 GPLAWDALVKLHVEGGEVEKADSILLKAQQQNK-----FKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
+..-+-.+...+.+.|+++.|...|+.+.+... -.+....+..+..++.+.|++++|...++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 344445566666666666666666666554321 1123445666666667777777777777766664
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.051 Score=37.31 Aligned_cols=67 Identities=10% Similarity=-0.022 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCC
Q 012577 298 STKHYTALLKVYADHKM---LSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNK 365 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 365 (460)
|+..+..+..++...++ .++|..++++..+.. +-++.....+...+.+.|++++|+..|+++.+..+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 55566666666654433 567777777777653 44566666677777777777777777777766543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.16 Score=50.93 Aligned_cols=94 Identities=21% Similarity=0.264 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHH
Q 012577 24 RAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANC 103 (460)
Q Consensus 24 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~ 103 (460)
...+..++..+.+.|.++.|+++.+. + ..-.......|++++|.++.+.+ .+...|..+...+
T Consensus 629 ~~~~~~~~~~l~~~~~~~~a~~~~~~--------~-----~~~f~~~l~~~~~~~A~~~~~~~----~~~~~W~~la~~a 691 (814)
T 3mkq_A 629 KDSLTKIARFLEGQEYYEEALNISPD--------Q-----DQKFELALKVGQLTLARDLLTDE----SAEMKWRALGDAS 691 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHCCC--------H-----HHHHHHHHHHTCHHHHHHHHTTC----CCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCChHHheecCCC--------c-----chheehhhhcCCHHHHHHHHHhh----CcHhHHHHHHHHH
Confidence 44456666666677777777655421 1 11133456788999998887766 4567899999999
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc
Q 012577 104 VAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK 143 (460)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 143 (460)
.+.|+++.|.++|.++.. |..+...+...++
T Consensus 692 l~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~ 722 (814)
T 3mkq_A 692 LQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNN 722 (814)
T ss_dssp HHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCC
Confidence 999999999999988754 3344445554554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.06 Score=53.99 Aligned_cols=45 Identities=11% Similarity=-0.114 Sum_probs=21.3
Q ss_pred HhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 012577 243 AELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRM 290 (460)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 290 (460)
...|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|..+
T Consensus 663 l~~~~~~~A~~~~~~~---~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE---SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh---CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555443322 23344555555555555555555555443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.049 Score=40.99 Aligned_cols=81 Identities=17% Similarity=-0.005 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcCCChhhHHH
Q 012577 281 EEAEAVFKRMSKTWKKLSTKHYTALLKVYADHK---MLSKGKDLVKQMAESGCHI--GPLAWDALVKLHVEGGEVEKADS 355 (460)
Q Consensus 281 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~ 355 (460)
..+.+.|.+..+.+. ++..+...+..++++.+ +.+++..+++...+.. .| +...+-.+..+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344555555444444 45666666666666665 4456666666666653 23 23444445555666666666666
Q ss_pred HHHHHHHh
Q 012577 356 ILLKAQQQ 363 (460)
Q Consensus 356 ~~~~~~~~ 363 (460)
+++.+.+.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 66666654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.28 Score=36.53 Aligned_cols=117 Identities=9% Similarity=0.058 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCCHH----HHHHHHH---HHHcCCChhhHHHHHHHHHHhC
Q 012577 298 STKHYTALLKVYADHKML------SKGKDLVKQMAESGCHIGPL----AWDALVK---LHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~----~~~~li~---~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
|..+|-..+....+.|+. ++..++|++.... ++|+.. .|..+-- .+...+++++|.++|+.+...
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~- 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN- 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-
Confidence 444555555555555555 5556666666554 455321 0100000 112337899999999988665
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 012577 365 KFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINA 418 (460)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 418 (460)
+-.- ...|....+.-.+.|+...|.+++.+....+ +-+...+.+.++.+-..
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~-~k~~~~le~a~~nl~~~ 141 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG-AVPLEMLEIALRNLNLQ 141 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CBCHHHHHHHHHHHHTT
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC-CCcHHHHHHHHHhhhcC
Confidence 3334 6777777778889999999999999999887 33456666666655433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.19 Score=37.85 Aligned_cols=83 Identities=10% Similarity=0.001 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC---ChhhHHHHHHHHHHhCCCCc--CHHHHHHHHHHHHhcCCHHHH
Q 012577 315 LSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGG---EVEKADSILLKAQQQNKFKP--MFSSYMLIMDQYAKRGDIHST 389 (460)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 389 (460)
...+.+-|.+....| +++..+...+..++++.+ ++++++.+++...+.. .| ....+-.+.-++.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHH
Confidence 455666677666665 478888888999999988 6779999999998764 23 234455566788999999999
Q ss_pred HHHHHHHHHcC
Q 012577 390 EKIFHRMRQVG 400 (460)
Q Consensus 390 ~~~~~~m~~~~ 400 (460)
.+.++.+.+..
T Consensus 91 ~~y~~~lL~ie 101 (152)
T 1pc2_A 91 LKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999999864
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.32 Score=37.63 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=19.2
Q ss_pred hCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012577 209 SGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKL 257 (460)
Q Consensus 209 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (460)
+.|+++.|.++.+++ .+...|..|.+.....|+++-|.+.|..
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 444555554444433 1234444444444444444444444443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.77 Score=38.75 Aligned_cols=89 Identities=8% Similarity=0.006 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhh-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-CChH
Q 012577 144 KKVADVLLLMEKENVKLT---QFSYKILIDIKGQ-----SNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSG-GRKE 214 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~-~~~~ 214 (460)
..+...+++..+. .|+ -..|..+...|.+ .|+.++|.+.|++..+.+..-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3445555555554 455 4467777777877 388888888888887764212367777777777774 8888
Q ss_pred HHHHHHHHHHhCCCC--CCHHH
Q 012577 215 KAEAMLKEMEGDNLK--EHRWT 234 (460)
Q Consensus 215 ~a~~~~~~~~~~~~~--~~~~~ 234 (460)
++.+.+++....... |+...
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~l 279 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKL 279 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHH
T ss_pred HHHHHHHHHHcCCCCCCCChhH
Confidence 888888888877665 55433
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.037 Score=38.98 Aligned_cols=33 Identities=12% Similarity=-0.181 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHHHhcccchhHHHHHHHHHhc
Q 012577 21 DLSRAEIALAMANLRTRRMYGKALQLSEWLETN 53 (460)
Q Consensus 21 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 53 (460)
.++...+..+...+...+++..|+..|+.....
T Consensus 2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~ 34 (104)
T 2v5f_A 2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQ 34 (104)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHh
Confidence 356667777777777777777777777665543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.54 Score=36.35 Aligned_cols=100 Identities=12% Similarity=0.043 Sum_probs=48.5
Q ss_pred HHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 012577 242 YAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDL 321 (460)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 321 (460)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.|...|+.++..++
T Consensus 15 AL~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 34455555555555443 3344555555555556666666655554433 33333444445555554444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHH
Q 012577 322 VKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLK 359 (460)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 359 (460)
-+.....| . ++.....+...|+++++.++|.+
T Consensus 83 a~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 83 QNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444433 1 12222333344555555555543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.41 Score=34.86 Aligned_cols=34 Identities=6% Similarity=0.050 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCC
Q 012577 159 KLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEG 192 (460)
Q Consensus 159 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 192 (460)
+|++...-.+..+|.+.|+..+|.+++.+..+.|
T Consensus 122 ~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 122 EVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3444444444444444444444444444444444
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.23 E-value=0.19 Score=36.31 Aligned_cols=80 Identities=15% Similarity=-0.017 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHcCCChhhHHHH
Q 012577 282 EAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSK---GKDLVKQMAESGCHI--GPLAWDALVKLHVEGGEVEKADSI 356 (460)
Q Consensus 282 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~ 356 (460)
.+.+-|......|. |+..+-..+..++.+..+... ++.+++.+.+.+ .| .....-.+..++.+.|++++|.++
T Consensus 19 ~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 19 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34444444333333 344555555555555554433 555555554432 12 122333344455555555555555
Q ss_pred HHHHHHh
Q 012577 357 LLKAQQQ 363 (460)
Q Consensus 357 ~~~~~~~ 363 (460)
++.+.+.
T Consensus 97 ~~~lL~~ 103 (126)
T 1nzn_A 97 VRGLLQT 103 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.23 Score=41.90 Aligned_cols=63 Identities=16% Similarity=0.234 Sum_probs=27.6
Q ss_pred HHHHHHHHHHc-----CCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHc
Q 012577 336 AWDALVKLHVE-----GGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKR-GDIHSTEKIFHRMRQV 399 (460)
Q Consensus 336 ~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 399 (460)
.|..+...|.+ .|+.++|.+.|++.++.++-. +..++......+++. |+.+++.+.+++....
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~-~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH-DPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT-CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 44444444444 245555555555554433110 123333444444442 4555555555555443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.64 Score=33.89 Aligned_cols=67 Identities=15% Similarity=0.099 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLK 229 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 229 (460)
.......++.....|.-++-.+++..+... .+|++...-.+..+|.+.|+..+|..++.+.-+.|++
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 344455566666677777777777665332 2566677777777777777777777777777776654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.95 E-value=3.4 Score=41.34 Aligned_cols=150 Identities=9% Similarity=0.023 Sum_probs=68.5
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHhccCCCHHH-H---HHHHHHHHccCCH
Q 012577 207 YVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLY--AELGKADQVARIWKLCESNPWLDV-C---MAAIEAWGKLNKV 280 (460)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~-~---~~li~~~~~~~~~ 280 (460)
+.-.|+.+-...++..+.+.. +..+...+.-++ ...|+.+.+..+.+.+....+... | .++..+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH
Confidence 334555555555555544421 222222333332 355666666666665554333332 2 2334455566665
Q ss_pred HHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh-hhHHHHHHH
Q 012577 281 EEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEV-EKADSILLK 359 (460)
Q Consensus 281 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~ 359 (460)
....+++..+... ...+......+.-++...|+.+.+.++++.+.+.+ .|....-..+..+....|.. .++..++..
T Consensus 577 ~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 577 SAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 5555566665543 11233333333334444555555555555554432 33333333333333334333 455666666
Q ss_pred HH
Q 012577 360 AQ 361 (460)
Q Consensus 360 ~~ 361 (460)
+.
T Consensus 655 L~ 656 (963)
T 4ady_A 655 LT 656 (963)
T ss_dssp HH
T ss_pred Hc
Confidence 54
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.96 E-value=3.7 Score=37.59 Aligned_cols=94 Identities=13% Similarity=0.066 Sum_probs=44.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcccCcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC--HHHH
Q 012577 269 AAIEAWGKLNKVEEAEAVFKRMSKTWKKLS-----TKHYTALLKVYADHKMLSKGKDLVKQMAE----SGCHIG--PLAW 337 (460)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~--~~~~ 337 (460)
.|...|...|++.+|..++..+...-...+ ...+...+..|...+++.+|..++..+.. ...+|+ ...+
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 344555555555555555555442211111 12344445555556666666665555432 111111 1234
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 338 DALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 338 ~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
...+..+...+++.+|.+.|.++..
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4445555555666666655555544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.87 E-value=1.5 Score=32.73 Aligned_cols=100 Identities=8% Similarity=0.085 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHccCCH------HHHHHHHHHHHhcccCcCHH----HHHHHHH---HHHhcCCHHHHHHHHHHHHHc
Q 012577 262 PWLDVCMAAIEAWGKLNKV------EEAEAVFKRMSKTWKKLSTK----HYTALLK---VYADHKMLSKGKDLVKQMAES 328 (460)
Q Consensus 262 ~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~----~~~~li~---~~~~~g~~~~a~~~~~~~~~~ 328 (460)
.+..+|-..+...-+.|+. +...++|++.... ++|+.. .|-.+-- .+...++.++|.++|+.++..
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3444555555555555655 5566666655553 333321 1111110 112236777888888877665
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Q 012577 329 GCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 329 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (460)
+-.. ...|....+--.+.|++..|.+++......
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 3222 666666666667788888888888877654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.86 E-value=0.34 Score=47.25 Aligned_cols=128 Identities=10% Similarity=0.004 Sum_probs=81.7
Q ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc--hHHHHHHHHHHHc------CCCCC-HH--
Q 012577 96 YRTLLANCVAGNN-VKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK--KKVADVLLLMEKE------NVKLT-QF-- 163 (460)
Q Consensus 96 ~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~--~~a~~~~~~~~~~------~~~~~-~~-- 163 (460)
-..++..+...++ .+.|..+|+++.+.....+......++..+...+. .+|.+++.+..+. ..++. ..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3455666666666 58899999998886422222222333444444433 4555555444321 11221 11
Q ss_pred --------HHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012577 164 --------SYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEME 224 (460)
Q Consensus 164 --------~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (460)
....=.+.+...|+++-|+++-++..... +-+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 12222445677899999999999988763 4458899999999999999999999998773
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.71 E-value=1 Score=32.53 Aligned_cols=85 Identities=8% Similarity=-0.055 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhh---HHHHHHHHHHhCCCCc--CHHHHHHHHHHHHhcCCHH
Q 012577 313 KMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEK---ADSILLKAQQQNKFKP--MFSSYMLIMDQYAKRGDIH 387 (460)
Q Consensus 313 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 387 (460)
..+..+.+-+......| .++..+--.+.+++.+...... ++.+++.+.+.. .| .....-.+.-++.+.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhHH
Confidence 34455566666666655 3778888888899999887666 888888886643 23 2233445666899999999
Q ss_pred HHHHHHHHHHHcC
Q 012577 388 STEKIFHRMRQVG 400 (460)
Q Consensus 388 ~a~~~~~~m~~~~ 400 (460)
+|.+.++.+.+..
T Consensus 92 ~A~~~~~~lL~~e 104 (126)
T 1nzn_A 92 KALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999864
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.33 E-value=4.7 Score=36.85 Aligned_cols=97 Identities=10% Similarity=0.125 Sum_probs=71.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHcCCChhhHHHHHHHHHHh---CCCCcC--HH
Q 012577 302 YTALLKVYADHKMLSKGKDLVKQMAESGCHI-G----PLAWDALVKLHVEGGEVEKADSILLKAQQQ---NKFKPM--FS 371 (460)
Q Consensus 302 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~--~~ 371 (460)
...|...|...|++.+|.+++..+...-... + ...+...++.|...+++..|..++.++... ....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 4567888999999999999999986532222 2 246777888999999999999999887431 112222 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 372 SYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
.+...+..+...+++.+|-+.|.++.+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 556777788889999999988887764
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=93.10 E-value=4 Score=35.33 Aligned_cols=110 Identities=7% Similarity=0.014 Sum_probs=56.8
Q ss_pred hHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHH----HHHHhCCCCCChhhhHHHHHHH
Q 012577 63 YASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVF----NRMKDKGFPVTSFACNQLLILY 138 (460)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~----~~m~~~g~~~~~~~~~~ll~~~ 138 (460)
|.++..-|.+.+++++|.+++..-.. .+.+.|+...|-++- +.+.+.++++|......++..+
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~-------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQ-------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH-------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 44455556677777777776655322 344456655544443 4445566777776666666666
Q ss_pred HhcCc--hHHHHHHHHHH----HcC--CCCCHHHHHHHHHHHhhcCChhHHHHHH
Q 012577 139 KRLDK--KKVADVLLLME----KEN--VKLTQFSYKILIDIKGQSNDLTGMDQVV 185 (460)
Q Consensus 139 ~~~~~--~~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~ 185 (460)
..... ..-..+.+.+. +.| -.-|......+...|.+.+++.+|...|
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 55543 11112222221 112 1224444455555555555555555554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=92.80 E-value=0.00093 Score=60.12 Aligned_cols=192 Identities=10% Similarity=0.036 Sum_probs=86.8
Q ss_pred ChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHH
Q 012577 59 IERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILY 138 (460)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 138 (460)
|+..|..++....+.|.+++-.+++...++..+++..=+.|+-+|++.++..+-.+.+. .|+..-...+..-|
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrc 154 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRC 154 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHH
Confidence 34455555555555555555555555555544444445555555555555433222211 23443444444444
Q ss_pred HhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 012577 139 KRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAE 217 (460)
Q Consensus 139 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 217 (460)
...|. +.|.-+|..+. -|.-|...+.+.|++..|.+.-++ ..++.||..+-.+|...+.+.-|.
T Consensus 155 f~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 155 YDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp HHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTT
T ss_pred HHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHH
Confidence 44443 22222221111 111222223333333333221111 234556666666666666666554
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCCHHHHHHHHHHHHcc
Q 012577 218 AMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES--NPWLDVCMAAIEAWGKL 277 (460)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~ 277 (460)
-.--.++-..-. ...++..|...|.+++...+++.-.. ....-.|+-|.-.|++-
T Consensus 220 icGLniIvhade-----L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 220 MCGLHIVVHADE-----LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 276 (624)
T ss_dssp HHHHHHHCCSSC-----CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS
T ss_pred HhcchhcccHHH-----HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Confidence 433232211111 11345556666666666666665432 33444566666556554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.08 E-value=1.2 Score=43.47 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=24.0
Q ss_pred cCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012577 346 EGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRM 396 (460)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 396 (460)
..|+++-|+++-+++.... +-+..+|..|..+|.+.|+++.|+-.++.+
T Consensus 349 ~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 349 NRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3455555555555544322 123445555555555555555555555444
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.78 E-value=0.81 Score=41.10 Aligned_cols=195 Identities=11% Similarity=-0.022 Sum_probs=110.0
Q ss_pred CHHHHHHHHHHHH-hcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHh-hCHHHHHHHHHhcccC---------CC
Q 012577 23 SRAEIALAMANLR-TRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKL-RGLQKAESYIQKIPES---------FR 91 (460)
Q Consensus 23 ~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~---------~~ 91 (460)
++... .++..|. ..|+.-...++.+.++..........+....+..+-+. +........+...... .-
T Consensus 32 ~~k~~-~LL~~L~~~~g~~vsr~~L~~~lW~~~~~~~a~~~L~~~i~rLRk~L~~~~~~~~~i~~~~~~GY~l~~~~~~~ 110 (388)
T 2ff4_A 32 TPKQR-AVLAMLVINRNRPVGVDALITALWEEWPPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTC 110 (388)
T ss_dssp SHHHH-HHHHHHHHTTTSEEEHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHGGGTSCHHHHEEECSSEEEECCCGGGB
T ss_pred ChHHH-HHHHHHHhCCCCcccHHHHHHHhCCCCCChhHHHHHHHHHHHHHHhhcccCCCCceEEEEECCEEEEcCCCccc
Confidence 44444 3444444 44666666677777776541111223334444433221 1110000112111111 11
Q ss_pred chhHHHHHHHHH---HcCCCHHHHHHHHHHHHhC--CCC-CChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHH
Q 012577 92 GEVVYRTLLANC---VAGNNVKKAEEVFNRMKDK--GFP-VTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSY 165 (460)
Q Consensus 92 ~~~~~~~ll~~~---~~~~~~~~a~~~~~~m~~~--g~~-~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 165 (460)
|...|..++... ...|+.+.|.+.+.+.... |.. ++..... .+ .....-++++. ..+.
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~-w~--------~~~r~~l~~~~-------~~a~ 174 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQ-FV--------EPFATALVEDK-------VLAH 174 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTST-TH--------HHHHHHHHHHH-------HHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchh-HH--------HHHHHHHHHHH-------HHHH
Confidence 344566655432 3468899999988888764 321 2211100 00 11111122211 1234
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh-----CCCCCCHHHH
Q 012577 166 KILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEG-----DNLKEHRWTC 235 (460)
Q Consensus 166 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 235 (460)
..++..+...|++++|...+..+.... +.+...|..+|.++.+.|+..+|++.|+...+ .|+.|+..+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 557788889999999999999888664 66888999999999999999999999988754 4888887553
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.69 E-value=2.2 Score=29.15 Aligned_cols=46 Identities=9% Similarity=0.016 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 282 EAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 282 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 327 (460)
+..+-++.+...+..|++....+.+.+|.+.+++..|.++++.++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444444444445555555555555555555555555544443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.68 E-value=1 Score=40.38 Aligned_cols=71 Identities=11% Similarity=0.077 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCccHHH
Q 012577 335 LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ-----VGYVARFKQ 407 (460)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~ 407 (460)
.+...++..+...|+++++...+..+...++ -+...|..+|.++.+.|+..+|.+.|++..+ .|+.|+..+
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P--~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHP--YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4455566677777888888877777766553 3556777888888888888888888777653 477776554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.18 E-value=20 Score=37.46 Aligned_cols=167 Identities=11% Similarity=0.025 Sum_probs=95.4
Q ss_pred HHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCch
Q 012577 65 SCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKK 144 (460)
Q Consensus 65 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 144 (460)
.++..+.+.+..+.+.++....+. +...--.+..+|...|++++|.+.|.+.-. |+..+......+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~---~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~---------- 882 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS---DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVL---------- 882 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC---CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSH----------
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC---CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhh----------
Confidence 455566667777777776655543 333334455677888888888888876422 222221111000
Q ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCChHHHHH
Q 012577 145 KVADVLLLMEKEN--VKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDS----STQAILAKHYVSGGRKEKAEA 218 (460)
Q Consensus 145 ~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~l~~~~~~~~~~~~a~~ 218 (460)
.-+..+.... ...-..-|..++..+-+.+.++.+.++-....+..-+.+. ..|..+..++...|++++|..
T Consensus 883 ---~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 883 ---REFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp ---HHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred ---cccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0011111110 0112344667777888888888888777766543212221 257777888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 012577 219 MLKEMEGDNLKEHRWTCRLLLPLYAELGKADQ 250 (460)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 250 (460)
.+-.+.....+ ......|+..++..|..+.
T Consensus 960 aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 960 ALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 88777655443 3456666666666665443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.78 E-value=3.4 Score=28.07 Aligned_cols=90 Identities=13% Similarity=0.042 Sum_probs=66.2
Q ss_pred HhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHH
Q 012577 35 RTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEE 114 (460)
Q Consensus 35 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 114 (460)
.-....++|..+-+|+...+ . ..-+--.-+..+...|++++|..+.+..+. ||...|-+|.. .+.|..+++..
T Consensus 17 TG~H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~--pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 17 SGQHCHEEALCIAEWLERLG--Q-DEAARLIRISSLANQGRYQEALAFAHGNPW--PALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp HTTTCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCCC--GGGHHHHHHHH--HHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCCC--chHHHHHHHHH--HhcccHHHHHH
Confidence 34567788999999988775 2 222333345667889999999999999884 99999988765 57788888888
Q ss_pred HHHHHHhCCCCCChhhhH
Q 012577 115 VFNRMKDKGFPVTSFACN 132 (460)
Q Consensus 115 ~~~~m~~~g~~~~~~~~~ 132 (460)
-+.++...| .|....|.
T Consensus 90 rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 90 RLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHTCS-SHHHHHHH
T ss_pred HHHHHHhCC-CHHHHHHH
Confidence 888888776 34444443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.73 E-value=12 Score=38.96 Aligned_cols=169 Identities=10% Similarity=0.037 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCC-CchhHHHHHHHHHH
Q 012577 26 EIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESF-RGEVVYRTLLANCV 104 (460)
Q Consensus 26 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~ 104 (460)
....++..+...+.++.+.++..++.. ++...-.+..++..+|++++|..+|++..... .+...
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~~~------~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l--------- 878 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWLNS------DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQ--------- 878 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHSCC------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCS---------
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhccC------CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchh---------
Confidence 344566777788888888777665432 33333457788899999999999999975431 11000
Q ss_pred cCCCHHHHHHHHHHHHhCCC--CCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhhcCC
Q 012577 105 AGNNVKKAEEVFNRMKDKGF--PVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQ----FSYKILIDIKGQSND 177 (460)
Q Consensus 105 ~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~ 177 (460)
...... +..+..... ..-..-|..++..+.+.+. +.+.++-....+...+.+. ..|..+.+.+...|+
T Consensus 879 -~~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ 953 (1139)
T 4fhn_B 879 -FAVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK 953 (1139)
T ss_dssp -CSSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC
T ss_pred -hhhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC
Confidence 000001 111111110 1122345566666666665 5555544444433211121 257888999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHH
Q 012577 178 LTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKA 216 (460)
Q Consensus 178 ~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a 216 (460)
+++|...+-.+.... --......|+..+|..|..+.-
T Consensus 954 ye~Ay~aL~~~pd~~--~r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 954 FDAAHVALMVLSTTP--LKKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp SGGGGHHHHHHHHSS--SCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHhCCCHH--HHHHHHHHHHHHHHhCCChhhh
Confidence 999999998887664 3356677777777777765543
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=89.67 E-value=3.5 Score=28.06 Aligned_cols=90 Identities=13% Similarity=0.004 Sum_probs=65.7
Q ss_pred HhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHH
Q 012577 35 RTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEE 114 (460)
Q Consensus 35 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 114 (460)
.-....++|..+-+|+...+ . ..-+--.-+..+...|++++|..+.+..+. ||...|-+|.. .+.|..+++..
T Consensus 18 TG~H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~--pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 18 TGNHYHEEANCIAEWLHLKG--E-EEAVQLIRLSSLMNRGDYASALQQGNKLAY--PDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp HTTTCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSCC--GGGHHHHHHHH--HHHTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCCC--chHHHHHHHHH--HhcccHHHHHH
Confidence 34567788999999988775 2 222333345667889999999999999984 99999988865 46688888888
Q ss_pred HHHHHHhCCCCCChhhhH
Q 012577 115 VFNRMKDKGFPVTSFACN 132 (460)
Q Consensus 115 ~~~~m~~~g~~~~~~~~~ 132 (460)
-+.++...| .|....|.
T Consensus 91 rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 91 RLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHTTCC-CHHHHHHH
T ss_pred HHHHHHhCC-CHHHHHHH
Confidence 887887776 34444443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.65 E-value=3.6 Score=28.15 Aligned_cols=48 Identities=13% Similarity=0.087 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc
Q 012577 213 KEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES 260 (460)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (460)
.-++.+-++.+...++.|++....+.+++|.+.+++..|.++++.++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 335555556666666666666666666666666666666666665543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.46 E-value=4.6 Score=29.34 Aligned_cols=73 Identities=11% Similarity=-0.078 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHhcccc---hhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCc
Q 012577 19 GNDLSRAEIALAMANLRTRRMY---GKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRG 92 (460)
Q Consensus 19 ~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 92 (460)
+..+++.+-......+.+..+. .+++.+++.+.+.++ ......+--+.-++.+.|+++.|+++.+.+.+..|+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~-~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc-chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 5556677766666666665443 246666666655431 112233334555666777777777777766655443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=89.16 E-value=10 Score=32.58 Aligned_cols=110 Identities=12% Similarity=0.041 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHH----HHHHHHhCCCCCCHHHHHHHH
Q 012577 164 SYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEA----MLKEMEGDNLKEHRWTCRLLL 239 (460)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~ 239 (460)
.|.++..-|.+.+++++|++++..-. ..+.+.|+...|-+ +++-..+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45566666777777777777664432 12344555544433 344445566777766666666
Q ss_pred HHHHhcCChhH-HHHHHHH-------hc--cCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 012577 240 PLYAELGKADQ-VARIWKL-------CE--SNPWLDVCMAAIEAWGKLNKVEEAEAVFK 288 (460)
Q Consensus 240 ~~~~~~~~~~~-a~~~~~~-------~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 288 (460)
+.+.....-+. -.++.+. .. ..++......+...|.+.|++.+|...|-
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 66655332111 1122221 11 12466667777777777788877777664
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=88.96 E-value=4.6 Score=29.34 Aligned_cols=60 Identities=7% Similarity=-0.027 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012577 281 EEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALV 341 (460)
Q Consensus 281 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 341 (460)
-+..+-++.+...+..|++......+.+|.+.+++..|..+|+-.+.+ +.+...+|..++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 344455555555556666666666666666666666666666666554 233333444444
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.90 E-value=1.7 Score=33.05 Aligned_cols=28 Identities=7% Similarity=0.044 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 371 SSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
..--.+..+|.+.|++++|+.+++.+..
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 3334577888999999999999886543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=88.80 E-value=21 Score=35.88 Aligned_cols=243 Identities=11% Similarity=-0.028 Sum_probs=123.3
Q ss_pred HhhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC--C-----CCHHHHHHHHHHH
Q 012577 172 KGQSNDLTGMDQVVEAMKSEGIEPD--SSTQAILAKHYVSGGRKEKAEAMLKEMEGDNL--K-----EHRWTCRLLLPLY 242 (460)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~~l~~~~ 242 (460)
....|+.++++.+++.....+-..+ ...-..+.-+....|..+++..++.......- . +....-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4556777777777766553210122 22333344445566666677777766554321 0 1111112222222
Q ss_pred --HhcCChhHHHHHHHHhccCCCHH-H---HHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHH
Q 012577 243 --AELGKADQVARIWKLCESNPWLD-V---CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLS 316 (460)
Q Consensus 243 --~~~~~~~~a~~~~~~~~~~~~~~-~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 316 (460)
...++. ++...+..+....+.. . -.++...++-.|+.+....++..+.+.. .-+..-...+.-++...|+.+
T Consensus 464 a~~GS~~e-ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 464 AAMGSANI-EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HSTTCCCH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGG
T ss_pred HhcCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChH
Confidence 223333 4444444433333322 1 2233444556677777777777666532 112222333444455778888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH--HHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012577 317 KGKDLVKQMAESGCHIGPLAWD--ALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFH 394 (460)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 394 (460)
.+..+++.+.... .|....-. .+.-+|+..|+.....++++.+... ...++.-...+.-++.-.|+.+.+.++++
T Consensus 542 ~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 542 LADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 8888888877642 23222222 2334566677877777788877653 22334433334344555677666677776
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhcCC
Q 012577 395 RMRQVGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 395 ~m~~~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
.+.+.+ .|..+.-..+.-+....|+
T Consensus 619 ~L~~~~-d~~VR~gAalALGli~aGn 643 (963)
T 4ady_A 619 LLSKSH-NAHVRCGTAFALGIACAGK 643 (963)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHTSSS
T ss_pred HHHhcC-CHHHHHHHHHHHHHhccCC
Confidence 555544 4555444444444444444
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=88.38 E-value=0.017 Score=52.22 Aligned_cols=223 Identities=10% Similarity=0.064 Sum_probs=117.2
Q ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012577 92 GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILID 170 (460)
Q Consensus 92 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~ 170 (460)
.+.+|..|..+....+++.+|++.|-+ . -|+..|..++.+..+.|. ++...++....+.. .+...=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk---A---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK---A---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC---C---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh---C---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 456788888888888888877766522 2 267777888888777777 55555555444432 23333346777
Q ss_pred HHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 012577 171 IKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQ 250 (460)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 250 (460)
+|++.+++.+..+++. .||..-...+..-|...|.++.|.-+|..+-.. ..|...+.+.|++..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~---------akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF---------GRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC---------TTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccH---------HHHHHHHHHHHHHHH
Confidence 7888777765544432 355555566777777777777777666544221 122222333333333
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 012577 251 VARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGC 330 (460)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 330 (460)
|.+.- ++..++.+|..+-.+|...+.+.-|.-.--.+.-. ......++..|...|.+++.+.+++.-....
T Consensus 189 AVdaA---rKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE- 259 (624)
T 3lvg_A 189 AVDGA---RKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE- 259 (624)
T ss_dssp STTTT---TTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-
T ss_pred HHHHH---HhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-
Confidence 33211 11234445555555555555544443332222211 1112223444455555555555555444221
Q ss_pred CCCHHHHHHHHHHHHcC
Q 012577 331 HIGPLAWDALVKLHVEG 347 (460)
Q Consensus 331 ~~~~~~~~~li~~~~~~ 347 (460)
+....+|+-|.-.|++-
T Consensus 260 rAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 260 RAHMGMFTELAILYSKF 276 (624)
T ss_dssp TCCHHHHHHHHHHHHSS
T ss_pred chhHHHHHHHHHHHHhc
Confidence 23445555555555543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=88.25 E-value=6.2 Score=29.10 Aligned_cols=68 Identities=9% Similarity=-0.124 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHHhcccch---hHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccC
Q 012577 21 DLSRAEIALAMANLRTRRMYG---KALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPES 89 (460)
Q Consensus 21 ~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (460)
.+++.+-......|.+..+.. +++.+++.+....+. ......--+.-++.+.|++++|+++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~-~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc-chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 445555555555555443332 344455444443210 11112222333444455555555544444433
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.91 E-value=13 Score=32.24 Aligned_cols=167 Identities=14% Similarity=0.094 Sum_probs=92.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-----hHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012577 95 VYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-----KKVADVLLLMEKENVKLTQFSYKILI 169 (460)
Q Consensus 95 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~li 169 (460)
.|.++..-|.+++++++|++++-.-.. .+.+.++ +-+.-+++-+.+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344566678899999999998654221 1112222 33444556666677788888777777
Q ss_pred HHHhhcCChhH-HHHHHHHHH----hCC--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012577 170 DIKGQSNDLTG-MDQVVEAMK----SEG--IEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLY 242 (460)
Q Consensus 170 ~~~~~~~~~~~-a~~~~~~m~----~~g--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 242 (460)
..+.....-+- =.++.++++ +.| -.-|......+...|.+.+++.+|..-|- .|-.+...+|..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 77766554221 122222222 222 23466777778888888888888877662 23333335665555444
Q ss_pred HhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 012577 243 AELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSK 292 (460)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 292 (460)
...+...++- ... ...+-.|...+++..|..+++...+
T Consensus 178 ~~~~~~~e~d-----------lfi-aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 178 YKQDESHTAP-----------LYC-ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTSCGGGHH-----------HHH-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCccHH-----------HHH-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4433322221 111 1223345556777777776665543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=87.65 E-value=6.4 Score=28.60 Aligned_cols=69 Identities=7% Similarity=-0.090 Sum_probs=40.8
Q ss_pred cCcCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Q 012577 295 KKLSTKHYTALLKVYADHKML---SKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 295 ~~p~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (460)
..|+..+--.+..++.+..+. .+++.+++++.+.+..-....+-.+..++.+.|++++|.++.+.+.+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 345666655566666665543 356666776666541112344455666677777777777777776653
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=87.44 E-value=21 Score=34.19 Aligned_cols=268 Identities=9% Similarity=0.024 Sum_probs=130.9
Q ss_pred HHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 012577 45 QLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGF 124 (460)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 124 (460)
++-..+.+....|.....-...+..+++.+++.....++.. + ..+...--....+....|+..+|......+-..|
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~--p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~- 132 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-K--PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG- 132 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-C--CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-C--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-
Confidence 44444444444444555566677888888888888876665 2 1333333345566777888888888777776665
Q ss_pred CCChhhhHHHHHHHHhcCc---hHHHHHHHHHHHcC-----------CCCCHHH-HHHHHHHHhhcCChhHHHHHHHHHH
Q 012577 125 PVTSFACNQLLILYKRLDK---KKVADVLLLMEKEN-----------VKLTQFS-YKILIDIKGQSNDLTGMDQVVEAMK 189 (460)
Q Consensus 125 ~~~~~~~~~ll~~~~~~~~---~~a~~~~~~~~~~~-----------~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~ 189 (460)
...+..+..++..+.+.|. +....-+..+...| ++++... ...++..+. +...+......
T Consensus 133 ~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~-- 207 (618)
T 1qsa_A 133 KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFART-- 207 (618)
T ss_dssp SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHH--
T ss_pred CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhc--
Confidence 3456777888888877665 23333333333332 1111110 011111111 11111111110
Q ss_pred hCCCCCCHHH---HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHHhcCChhHHHHHHHHhcc-C
Q 012577 190 SEGIEPDSST---QAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLL----LPLYAELGKADQVARIWKLCES-N 261 (460)
Q Consensus 190 ~~g~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~-~ 261 (460)
+.++... +...+.-+.+ .+.+.|...+....+... .+......+ ...+...+...++...+..... .
T Consensus 208 ---~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~ 282 (618)
T 1qsa_A 208 ---TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS 282 (618)
T ss_dssp ---SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC
T ss_pred ---cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC
Confidence 1222221 1112222222 366777777777654321 222222222 2222233323344444443322 2
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 262 PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 262 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 327 (460)
.+.....-.+....+.|+++.|...|+.|...... .....--+..++...|+.++|..+|..+..
T Consensus 283 ~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 283 QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 23222222333344567788888877777653221 333344455666777777777777777653
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=86.74 E-value=17 Score=32.44 Aligned_cols=242 Identities=12% Similarity=0.097 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCC-hhHHHHHHHHhc----cCCCHH--H
Q 012577 198 STQAILAKHYVSGGRKEKAEAMLKEMEGD-NLKE---HRWTCRLLLPLYAELGK-ADQVARIWKLCE----SNPWLD--V 266 (460)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~----~~~~~~--~ 266 (460)
.+...|...|.+.|+.++...++.....- +..| .......+++.+....+ .+.-.++..... ...-.. +
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888999999888888776432 1111 12345567777766433 333333333322 221111 1
Q ss_pred --HHHHHHHHHccCCHHHHHHHHHHHHhcccCcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHH
Q 012577 267 --CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLS-----TKHYTALLKVYADHKMLSKGKDLVKQMAES--GCHIGPLAW 337 (460)
Q Consensus 267 --~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~ 337 (460)
=.-++..|...|++.+|.+++..+.+.-...| ...+..-+..|...+++.++...+...... .+.+++.+-
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 12577888888999999888888776422222 233555567788888888888888877542 233444443
Q ss_pred HHHHHH-----HH-cCCChhhHHHHHHHHHHhCCCC--c---CHHHHHHHHHHHHhcCCHHHHHHHHH-HH-HHcCCCcc
Q 012577 338 DALVKL-----HV-EGGEVEKADSILLKAQQQNKFK--P---MFSSYMLIMDQYAKRGDIHSTEKIFH-RM-RQVGYVAR 404 (460)
Q Consensus 338 ~~li~~-----~~-~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~-~m-~~~~~~~~ 404 (460)
. .+.. +. ..+++..|...|-+..+.+.-. | +...|..+. +. -.++..+...++. .. ... ..|+
T Consensus 180 a-~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~-aL-l~~~r~el~~~l~~~~~~~~-~~pe 255 (394)
T 3txn_A 180 G-ALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLC-KI-MLGQSDDVNQLVSGKLAITY-SGRD 255 (394)
T ss_dssp H-HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-HH-HTTCGGGHHHHHHSHHHHTT-CSHH
T ss_pred H-HHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-HH-HcCCHHHHHHHhcccccccc-CCcc
Confidence 3 3332 23 6788888888887775443211 1 111232222 12 2233333333332 21 222 3566
Q ss_pred HHHHHHHHHHHHhcCC-chhhhHHHHHhCCCCcCHHHHHHH
Q 012577 405 FKQFQTLVQAYINAKT-PAYGIRDRMRADNVFPNKALAAQV 444 (460)
Q Consensus 405 ~~~~~~l~~~~~~~g~-~~~~~~~~m~~~~~~p~~~~~~~l 444 (460)
...+..|+.+|....- ....++..... .+..|......+
T Consensus 256 i~~l~~L~~a~~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~ 295 (394)
T 3txn_A 256 IDAMKSVAEASHKRSLADFQAALKEYKK-ELAEDVIVQAHL 295 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSTT-TTTTSHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHhcChHHHHHH
Confidence 6667777777655432 22333333322 455666544433
|
| >3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=86.41 E-value=8.9 Score=33.63 Aligned_cols=66 Identities=17% Similarity=0.116 Sum_probs=41.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCC
Q 012577 267 CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKM--LSKGKDLVKQMAESGCHIG 333 (460)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~ 333 (460)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+...+++..+...|+-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 466788888888888888888888643222 23334455555555433 3456777777777665443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=86.24 E-value=7.9 Score=28.15 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc
Q 012577 214 EKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES 260 (460)
Q Consensus 214 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (460)
-+..+-++.+...++.|++....+.+.+|.+.+|+..|.++|+.++.
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34555556666666677777777777777777777777777766543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.15 E-value=3.7 Score=31.19 Aligned_cols=26 Identities=12% Similarity=0.041 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHH
Q 012577 26 EIALAMANLRTRRMYGKALQLSEWLE 51 (460)
Q Consensus 26 ~~~~ll~~~~~~~~~~~a~~~~~~~~ 51 (460)
.+..+...+...+++..|...|+...
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34455555667777778877777643
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=85.09 E-value=13 Score=29.53 Aligned_cols=91 Identities=11% Similarity=0.081 Sum_probs=42.1
Q ss_pred ChhhhHHHHHHHHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012577 127 TSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKH 206 (460)
Q Consensus 127 ~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~ 206 (460)
+...-...+.++...+..++...+..+.. .++..+-...+.++.+.|+.+ +...+..+.+ .++..+-...+.+
T Consensus 94 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~a 166 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDERAVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADA 166 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHH
Confidence 44444444455555555434444433332 345445445555555555433 3333333332 3455555555555
Q ss_pred HHhCCChHHHHHHHHHHHh
Q 012577 207 YVSGGRKEKAEAMLKEMEG 225 (460)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~ 225 (460)
+.+.+. .++...+..+.+
T Consensus 167 L~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 167 LGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHCS-HHHHHHHHHHHH
T ss_pred HHHhCc-hhHHHHHHHHHh
Confidence 555554 334444444443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=84.67 E-value=6.7 Score=26.71 Aligned_cols=76 Identities=12% Similarity=0.043 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEM 223 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 223 (460)
++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+. .||...|-.|-. .+.|..+++..-+..+
T Consensus 24 qEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 24 EEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 777777777776653 33333333456677888888888877655 788888877643 5677778777777777
Q ss_pred HhCC
Q 012577 224 EGDN 227 (460)
Q Consensus 224 ~~~~ 227 (460)
...|
T Consensus 96 a~sg 99 (116)
T 2p58_C 96 ARSQ 99 (116)
T ss_dssp TTCC
T ss_pred HhCC
Confidence 6665
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=84.38 E-value=29 Score=33.15 Aligned_cols=200 Identities=12% Similarity=0.069 Sum_probs=107.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhhHHHHH----HHHhcC-chHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHH
Q 012577 107 NNVKKAEEVFNRMKDKGFPVTSFACNQLLI----LYKRLD-KKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGM 181 (460)
Q Consensus 107 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~----~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 181 (460)
.+.+.|...+....+.+. .+......+-. .....+ ..++...+...... .++.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 378899999988865432 23332222222 223334 45666666665443 34444444455556678999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccC
Q 012577 182 DQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESN 261 (460)
Q Consensus 182 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 261 (460)
.+.|+.|.... .......--+..++...|+.++|..+|+.+... .+ -|. ++ +..+.|..... .. ......
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg-~l-Aa~~Lg~~~~~-~~-~~~~~~ 374 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYP-MV-AAQRIGEEYEL-KI-DKAPQN 374 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHH-HH-HHHHTTCCCCC-CC-CCCCSC
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHH-HH-HHHHcCCCCCC-CC-CCCChh
Confidence 99999887542 123333445666778889999999999988752 11 233 22 22223321100 00 000000
Q ss_pred C-CHH---HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012577 262 P-WLD---VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLV 322 (460)
Q Consensus 262 ~-~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 322 (460)
. ... .-...+..+...|....|...+..+... . +......+.......|..+.+....
T Consensus 375 ~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 375 VDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp CCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 0 000 1112344566778888888877776653 2 3333334444445566666665443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.28 E-value=6.4 Score=26.78 Aligned_cols=77 Identities=10% Similarity=-0.016 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEM 223 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 223 (460)
++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+. .||...|-.|- -.+.|..+++..-+..+
T Consensus 23 qEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 23 EEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLAGL 94 (115)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHH
Confidence 777777777776653 33333333456778888888888776655 78888887764 45778888888877777
Q ss_pred HhCCC
Q 012577 224 EGDNL 228 (460)
Q Consensus 224 ~~~~~ 228 (460)
..+|-
T Consensus 95 a~sg~ 99 (115)
T 2uwj_G 95 GGSSD 99 (115)
T ss_dssp HTCSS
T ss_pred HhCCC
Confidence 76653
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.06 E-value=3.7 Score=34.11 Aligned_cols=58 Identities=14% Similarity=0.048 Sum_probs=36.1
Q ss_pred HHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC
Q 012577 32 ANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR 91 (460)
Q Consensus 32 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 91 (460)
..+.+.|++++|++....-.+.. |-+...-..++..+|-.|+++.|..-++...+..|
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p 62 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 62 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 34556677777776665555543 44555666677777777777777776666554434
|
| >2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A | Back alignment and structure |
|---|
Probab=82.73 E-value=12 Score=27.23 Aligned_cols=65 Identities=12% Similarity=0.157 Sum_probs=42.0
Q ss_pred hHHHHHHHHHhhCHHHHHHHHHhcccC-CCchhHHHHHHHHHHcCCC--HHHHHHHHHHHHhCCCCCC
Q 012577 63 YASCLDLIAKLRGLQKAESYIQKIPES-FRGEVVYRTLLANCVAGNN--VKKAEEVFNRMKDKGFPVT 127 (460)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~g~~~~ 127 (460)
...++.-|...|+.++|.+.++++... .....+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 455777788888888888888887641 1233445555556655432 4667777888877765433
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.69 E-value=22 Score=32.25 Aligned_cols=58 Identities=7% Similarity=-0.022 Sum_probs=25.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcccCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012577 268 MAAIEAWGKLNKVEEAEAVFKRMSKTWKKL--STKHYTALLKVYADHKMLSKGKDLVKQM 325 (460)
Q Consensus 268 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~ 325 (460)
..+...|.+.|+++.|.+.|.++......+ -...+-..+..+...+++..+...+..+
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344455555555555555555544432111 1223334444444445555554444444
|
| >3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=81.31 E-value=14 Score=32.40 Aligned_cols=62 Identities=16% Similarity=0.060 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCC--CHHHHHHHHHHHHccCC--HHHHHHHHHHHHhcccC
Q 012577 235 CRLLLPLYAELGKADQVARIWKLCESNP--WLDVCMAAIEAWGKLNK--VEEAEAVFKRMSKTWKK 296 (460)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~ 296 (460)
...++.-|...|+.++|.+.++++.... ......++..++-+.++ .+...+++..+...|+-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 4677888888899999999998886532 12244555555555433 34566777777776554
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=81.00 E-value=6 Score=32.88 Aligned_cols=57 Identities=12% Similarity=0.025 Sum_probs=41.9
Q ss_pred HHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 012577 170 DIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDN 227 (460)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 227 (460)
....+.|++++|++....-++.. +-|...-..|+..+|-.|++++|.+-++...+..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34567788888888877777664 5677777778888888888888888777776643
|
| >2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A | Back alignment and structure |
|---|
Probab=80.38 E-value=9.6 Score=28.61 Aligned_cols=65 Identities=12% Similarity=0.157 Sum_probs=41.5
Q ss_pred hHHHHHHHHHhhCHHHHHHHHHhcccC-CCchhHHHHHHHHHHcCCC--HHHHHHHHHHHHhCCCCCC
Q 012577 63 YASCLDLIAKLRGLQKAESYIQKIPES-FRGEVVYRTLLANCVAGNN--VKKAEEVFNRMKDKGFPVT 127 (460)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~g~~~~ 127 (460)
...++.-|...|+.++|.+.++++... .....+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 456777788888888888888887641 1233445555555555332 4567777777777665433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 460 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.65 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.63 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.43 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.33 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.24 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.22 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.2 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.18 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.15 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.12 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.03 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.01 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.81 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.71 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.67 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.66 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.65 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.58 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.57 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.54 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.45 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.43 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.43 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.37 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.31 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.27 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.26 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.24 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.23 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.17 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.15 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.15 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.11 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.1 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.03 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.97 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.94 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.85 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.82 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.82 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.8 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.8 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.79 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.78 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.55 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.43 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.33 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.32 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.28 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.27 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.1 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.95 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.23 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.17 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.68 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.67 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.92 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.39 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.93 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.8 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 91.02 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.72 | |
| d2nsza1 | 129 | Programmed cell death 4, PDCD4 {Mouse (Mus musculu | 82.1 | |
| d1u9pa1 | 36 | Arc repressor {Salmonella bacteriophage P22 [TaxId | 80.98 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=4e-23 Score=187.56 Aligned_cols=380 Identities=9% Similarity=-0.027 Sum_probs=310.6
Q ss_pred HHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHHHHcCCC
Q 012577 30 AMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLANCVAGNN 108 (460)
Q Consensus 30 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~ 108 (460)
+...+.+.|++++|++.|+.+.+.. |-+...+..+..++.+.|++++|...|++..+..| +..+|..+..+|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence 4556778899999999999998775 55677888899999999999999999999876655 56789999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHH
Q 012577 109 VKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEA 187 (460)
Q Consensus 109 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 187 (460)
+++|...+....+.... +................ ..+........... .................+....+...+..
T Consensus 83 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccccc-cccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHH
Confidence 99999999999887533 33333333333333333 44444444444443 44555566667777888889999998888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCCHH
Q 012577 188 MKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES--NPWLD 265 (460)
Q Consensus 188 m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~ 265 (460)
..... +.+...+..+...+...|++++|...+++..+.... +..++..+...+...|++++|...++.... .....
T Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 238 (388)
T d1w3ba_ 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHH
Confidence 77654 456788888999999999999999999998876533 567888999999999999999999988765 34566
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHV 345 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (460)
.+..+...+.+.|++++|...|++..+..+. +..++..+...+...|++++|.+.++..... .+.+...+..+...+.
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHH
Confidence 7888999999999999999999999886543 6788999999999999999999999999887 4678889999999999
Q ss_pred cCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 012577 346 EGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 420 (460)
+.|++++|.+.|+++.+..+ -+...+..+..+|.+.|++++|++.|++..+.. |-+...|..|..+|.+.||
T Consensus 317 ~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVFP--EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCT--TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 99999999999999876542 345678889999999999999999999999865 5567899999999988875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.2e-19 Score=164.20 Aligned_cols=368 Identities=13% Similarity=0.046 Sum_probs=301.8
Q ss_pred HHHHHHHhhCHHHHHHHHHhcccCCC-chhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-
Q 012577 66 CLDLIAKLRGLQKAESYIQKIPESFR-GEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK- 143 (460)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~- 143 (460)
+...+.+.|++++|.+.++++.+..| +...+..+..+|.+.|++++|...|++.++.. |-+..++..+..+|...|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 56677899999999999999877656 57788999999999999999999999998874 3467788889999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 012577 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEM 223 (460)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 223 (460)
++|...+....... +.+...+..........+....+........... .................+....+...+...
T Consensus 84 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence 99999999988875 4556666666666777777777777776666554 445556666667778888999999888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHH
Q 012577 224 EGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKH 301 (460)
Q Consensus 224 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 301 (460)
..... -+...+..+...+...|+++.|...++.... .| +...+..+...+...|++++|...++.....+.. +...
T Consensus 162 ~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 239 (388)
T d1w3ba_ 162 IETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVV 239 (388)
T ss_dssp HHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHH
T ss_pred hccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHH
Confidence 76543 3567788889999999999999999987655 55 5668899999999999999999999999886544 6778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012577 302 YTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYA 381 (460)
Q Consensus 302 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (460)
+..+...+.+.|++++|...+++..+.. +-+..++..+...+...|++++|.+.++...... +.+...+..+...+.
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC--CccchhhhHHHHHHH
Confidence 8889999999999999999999998863 4567899999999999999999999999987765 356678889999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCc--hhhhHHHHHhCCCCcCH-HHHHHH
Q 012577 382 KRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTP--AYGIRDRMRADNVFPNK-ALAAQV 444 (460)
Q Consensus 382 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--~~~~~~~m~~~~~~p~~-~~~~~l 444 (460)
+.|++++|++.|++..+.. |.+..+|..+..+|.+.|+. |...+++. ..+.|+. ..+..|
T Consensus 317 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a--l~l~P~~~~a~~~l 379 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEA--IRISPTFADAYSNM 379 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHH--HTTCTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHhCCCCHHHHHHH
Confidence 9999999999999999865 56788899999999999994 55555544 4567864 455555
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.9e-13 Score=118.71 Aligned_cols=247 Identities=12% Similarity=0.003 Sum_probs=162.7
Q ss_pred HHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 012577 169 IDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKA 248 (460)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 248 (460)
...+.+.|++++|+..|+++.+.. +-+..+|..+..++...|++++|...|.+..+..+. +...+..+..+|...|++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccccc
Confidence 444556666666666666665553 334555666666666666666666666665554322 345555555666666666
Q ss_pred hHHHHHHHHhcc-CCCH----------------HHHHHHHHHHHccCCHHHHHHHHHHHHhccc-CcCHHHHHHHHHHHH
Q 012577 249 DQVARIWKLCES-NPWL----------------DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWK-KLSTKHYTALLKVYA 310 (460)
Q Consensus 249 ~~a~~~~~~~~~-~~~~----------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~ 310 (460)
++|.+.++.... .|+. ......+..+...+.+.+|...|....+..+ .++..++..+...+.
T Consensus 104 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~ 183 (323)
T d1fcha_ 104 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 183 (323)
T ss_dssp HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred cccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 666666554332 1110 0011122233445667788888887776433 235677888889999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 012577 311 DHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTE 390 (460)
Q Consensus 311 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 390 (460)
..|++++|...++...... +-+..+|..+...|.+.|++++|.+.|+++.+..+ -+...|..+..+|.+.|++++|+
T Consensus 184 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~ 260 (323)
T d1fcha_ 184 LSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP--GYIRSRYNLGISCINLGAHREAV 260 (323)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhh--ccHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999988763 45688899999999999999999999999887653 24567888999999999999999
Q ss_pred HHHHHHHHcC----------CCccHHHHHHHHHHHHhcCC
Q 012577 391 KIFHRMRQVG----------YVARFKQFQTLVQAYINAKT 420 (460)
Q Consensus 391 ~~~~~m~~~~----------~~~~~~~~~~l~~~~~~~g~ 420 (460)
+.|++..+.. .......|..+-.++...|+
T Consensus 261 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~ 300 (323)
T d1fcha_ 261 EHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 300 (323)
T ss_dssp HHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCC
Confidence 9999887631 11223355666666666665
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2.3e-13 Score=119.36 Aligned_cols=268 Identities=9% Similarity=-0.074 Sum_probs=158.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 012577 98 TLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSN 176 (460)
Q Consensus 98 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 176 (460)
.....+.+.|++++|...|++.++.. |-+..+|..+..++...|+ ++|...+.+..+.. +-+...|..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 34556677788888888887777663 2234455555555555555 55555555554432 223444555555555555
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 012577 177 DLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWK 256 (460)
Q Consensus 177 ~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 256 (460)
++++|.+.++...... |+............. ..+.......+..+...+...++...+.
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 5555555555554431 211000000000000 0000001111222334455666666666
Q ss_pred Hhcc-C---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 012577 257 LCES-N---PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHI 332 (460)
Q Consensus 257 ~~~~-~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 332 (460)
.... . .+...+..+...+...|++++|...|+......+. +...|..+...|...|++++|.+.++...+.. +-
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PG 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hc
Confidence 5433 3 34556778888888899999999999988876543 67788889999999999999999999988863 44
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCc---------CHHHHHHHHHHHHhcCCHHHHH
Q 012577 333 GPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKP---------MFSSYMLIMDQYAKRGDIHSTE 390 (460)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~ 390 (460)
+..++..+..+|.+.|++++|++.|+++++..+-.+ ....|..+-.++...|+.+.+.
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 677888899999999999999999998876432111 1123455555665566655443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=1.8e-10 Score=99.73 Aligned_cols=215 Identities=8% Similarity=-0.023 Sum_probs=160.4
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012577 163 FSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGG-RKEKAEAMLKEMEGDNLKEHRWTCRLLLPL 241 (460)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (460)
..|+.+...+.+.+.+++|+++++++++.. +-+..+|+....++...| ++++|+..++...+.... +..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHH
Confidence 456667777888888899999999988875 556778888888887766 488999999888876544 66788888888
Q ss_pred HHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCC-----
Q 012577 242 YAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKM----- 314 (460)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----- 314 (460)
+...|++++|+..++.+.. .| +...|..+...+.+.|++++|++.++.+++.++. +...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhh
Confidence 8888999999888887765 44 5668888888888889999999999988887654 67778777766666554
Q ss_pred -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 012577 315 -LSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAK 382 (460)
Q Consensus 315 -~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (460)
+++|...+..+.+.. +.+...|..+...+.. ...+++.+.++...+..+...+...+..+...|..
T Consensus 201 ~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 567888888887764 4567777777666544 44677788887776655444455556666666543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.33 E-value=6.6e-10 Score=95.96 Aligned_cols=186 Identities=12% Similarity=0.039 Sum_probs=143.5
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-C-HHHHHHHHHHHHccCCHHHHHHHHH
Q 012577 212 RKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-W-LDVCMAAIEAWGKLNKVEEAEAVFK 288 (460)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~-~~~~~~li~~~~~~~~~~~a~~~~~ 288 (460)
..++|..+|+...+...+.+...|...+..+...|+++.|..+|+.+.. .| + ...|...+..+.+.|+++.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3567778888877655455566677777778888888888888887655 33 2 3467888888888889999999999
Q ss_pred HHHhcccCcCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCC
Q 012577 289 RMSKTWKKLSTKHYTALLKV-YADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFK 367 (460)
Q Consensus 289 ~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 367 (460)
.+.+.++. +...|...... +...|+.+.|..+|+.+.+. .+.+...|...+..+.+.|+++.|..+|++..+..+..
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 88876543 44445444433 34568899999999999886 46678899999999999999999999999998876666
Q ss_pred cC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 368 PM--FSSYMLIMDQYAKRGDIHSTEKIFHRMRQV 399 (460)
Q Consensus 368 ~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 399 (460)
|+ ...|...+..-...|+.+.+.++++++.+.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 54 357888888888889999999999988764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.24 E-value=2.9e-09 Score=91.84 Aligned_cols=192 Identities=10% Similarity=-0.006 Sum_probs=137.8
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 012577 177 DLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWK 256 (460)
Q Consensus 177 ~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 256 (460)
..++|..+|++..+...+.+...|...+....+.|+++.|..+|+.+.+........+|...+..+.+.|+.+.|..+|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45677777877776544556667777777777888888888888887765444334567777888888888888888887
Q ss_pred Hhcc-CC-CHHHHHHHHHH-HHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC
Q 012577 257 LCES-NP-WLDVCMAAIEA-WGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESG-CHI 332 (460)
Q Consensus 257 ~~~~-~~-~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~ 332 (460)
.... .| +...|...... +...|+.+.|..+|+.+.+..+. +...|...+..+.+.|+++.|..+|++..+.. ..|
T Consensus 159 ~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 7654 33 33344433332 34467888899999988876433 67788888888889999999999999987753 233
Q ss_pred C--HHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC
Q 012577 333 G--PLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM 369 (460)
Q Consensus 333 ~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 369 (460)
+ ...|...+..-...|+.+.+..+++++.+..+-.++
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 2 457888888777889999999998888776644443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=3.6e-09 Score=91.29 Aligned_cols=221 Identities=10% Similarity=0.018 Sum_probs=123.7
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc--hHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012577 93 EVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK--KKVADVLLLMEKENVKLTQFSYKILID 170 (460)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~ 170 (460)
...|+.+...+.+.+.+++|+++++++++.+ |-+...|+....++...+. ++|...++...... +-+..+|+.+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 3456677777778888888888888888764 2244455555555555432 56666666655543 344556666666
Q ss_pred HHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 012577 171 IKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQ 250 (460)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 250 (460)
.+.+.|++++|++.++++.+.. +.+...|..+...+...|++++|+..++++++.++. +...|+.+...+.+.+...
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~- 197 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN- 197 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC-
T ss_pred HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccc-
Confidence 6666666666666666666543 345566666666666666666666666666654432 3444444444333333211
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 012577 251 VARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGC 330 (460)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 330 (460)
..+.+++|++.+....+..+. +...|+.+...+.. ...+++.+.++...+...
T Consensus 198 -------------------------~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~ 250 (315)
T d2h6fa1 198 -------------------------DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDLQP 250 (315)
T ss_dssp -------------------------SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTT
T ss_pred -------------------------hhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHhCC
Confidence 112245666666666665433 55666655554433 335666666666655322
Q ss_pred C-CCHHHHHHHHHHHH
Q 012577 331 H-IGPLAWDALVKLHV 345 (460)
Q Consensus 331 ~-~~~~~~~~li~~~~ 345 (460)
. .+...+..++..|.
T Consensus 251 ~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 251 SHSSPYLIAFLVDIYE 266 (315)
T ss_dssp TCCCHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHH
Confidence 2 23444555555443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=4.1e-09 Score=92.78 Aligned_cols=162 Identities=12% Similarity=0.063 Sum_probs=81.1
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC----CCCC--CHHH
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSE----GIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD----NLKE--HRWT 234 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~ 234 (460)
+..+...+...|+++.+...+...... +......++......+...+++..+...+.+.... +..+ ....
T Consensus 136 ~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~ 215 (366)
T d1hz4a_ 136 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 215 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHH
Confidence 444555666666777666666665532 11122344445555566666666666665544321 1111 0122
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcc-CC-----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc----ccCc-CHHHHH
Q 012577 235 CRLLLPLYAELGKADQVARIWKLCES-NP-----WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT----WKKL-STKHYT 303 (460)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~ 303 (460)
+..+...+...|+++.|...++.... .+ ....+..+...+...|++++|...++..... +..| ...++.
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 295 (366)
T d1hz4a_ 216 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 295 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHH
Confidence 33444455556666666666554432 11 1123444555566666666666666555421 1112 223455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 012577 304 ALLKVYADHKMLSKGKDLVKQMA 326 (460)
Q Consensus 304 ~li~~~~~~g~~~~a~~~~~~~~ 326 (460)
.+...|...|++++|.+.+++..
T Consensus 296 ~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 296 LLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 55566666666666666665544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=1.1e-08 Score=89.91 Aligned_cols=199 Identities=13% Similarity=0.014 Sum_probs=123.4
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHh----CCCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHhCC----CCCCH
Q 012577 164 SYKILIDIKGQSNDLTGMDQVVEAMKS----EGIEPD---SSTQAILAKHYVSGGRKEKAEAMLKEMEGDN----LKEHR 232 (460)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~ 232 (460)
.+..+...+...|++..+...+..... .+.... ...+..+...+...|+++.+...+....... .....
T Consensus 93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (366)
T d1hz4a_ 93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 172 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence 445566677788888888888776543 111111 2355566777888899999888888776532 22233
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcc----CC-----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCc---CHH
Q 012577 233 WTCRLLLPLYAELGKADQVARIWKLCES----NP-----WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKL---STK 300 (460)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~ 300 (460)
.++......+...++...+...+..... .. ....+......+...|+++.|...+.......... ...
T Consensus 173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 252 (366)
T d1hz4a_ 173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 252 (366)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence 4555566667777887777776654332 11 11234455566677778888887777765543221 233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 012577 301 HYTALLKVYADHKMLSKGKDLVKQMAES----GCHI-GPLAWDALVKLHVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 301 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (460)
.+..+...+...|++++|...++.+... +..| ...++..+...|.+.|++++|.+.+++..+
T Consensus 253 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 253 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4555667777778888887777766532 2222 234566666777777777777777776644
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.15 E-value=4.1e-10 Score=98.60 Aligned_cols=228 Identities=7% Similarity=-0.111 Sum_probs=108.7
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC--hHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhHHHH
Q 012577 177 DLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR--KEKAEAMLKEMEGDNLKEHRWTC-RLLLPLYAELGKADQVAR 253 (460)
Q Consensus 177 ~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~ 253 (460)
++++|+.+++...+.. +.+...|..+..++...++ +++|...+..+.+.... +...+ ......+...+.++.|..
T Consensus 88 ~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~ 165 (334)
T d1dcea1 88 LVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELA 165 (334)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHH
Confidence 3444555555544432 3344444444444443332 44555555555443322 22222 222344444555555555
Q ss_pred HHHHhcc-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 012577 254 IWKLCES-NP-WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCH 331 (460)
Q Consensus 254 ~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 331 (460)
.++.... +| +...|+.+...+.+.|++++|...+....+.. |+ ...+...+...+..+++...+....... +
T Consensus 166 ~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~ 239 (334)
T d1dcea1 166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-A 239 (334)
T ss_dssp HHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-C
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-c
Confidence 5554433 22 33445555555555555555444443322210 11 1112223334455555555555555542 3
Q ss_pred CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 012577 332 IGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTL 411 (460)
Q Consensus 332 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 411 (460)
++...+..+...+...|+.++|...+.+..+.+ +.+...+..+..++.+.|++++|.+.+++..+.+ |.+...|+.|
T Consensus 240 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~y~~~L 316 (334)
T d1dcea1 240 EPLFRCELSVEKSTVLQSELESCKELQELEPEN--KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDL 316 (334)
T ss_dssp CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cccHHHHHHH
Confidence 344444555555555666666666666654432 1233455566666666777777777777776653 3234445544
Q ss_pred HHHH
Q 012577 412 VQAY 415 (460)
Q Consensus 412 ~~~~ 415 (460)
...+
T Consensus 317 ~~~~ 320 (334)
T d1dcea1 317 RSKF 320 (334)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=7.5e-09 Score=86.73 Aligned_cols=194 Identities=11% Similarity=0.053 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-CHHHHHHHHHHHHc
Q 012577 199 TQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES-NP-WLDVCMAAIEAWGK 276 (460)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~ 276 (460)
+|..+..+|.+.|++++|+..|++..+..+. +..+|..+..+|...|++++|...|++... .| +..++..+..+|..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 4445555566666666666666665554322 445555666666666666666666655444 33 34456666666666
Q ss_pred cCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHH
Q 012577 277 LNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSI 356 (460)
Q Consensus 277 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 356 (460)
.|++++|...|+...+..+. +......+..++.+.+..+.+..+........ ++...+. ++..+. +...... .
T Consensus 118 ~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~--~~~~~~~-~ 190 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYL--GNISEQT-L 190 (259)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHT--TSSCHHH-H
T ss_pred HhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHH--HHHHHHH-H
Confidence 77777777777766664332 33333334444444454444444444444422 2211121 222221 1111111 1
Q ss_pred HHHHHHhCC----CCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 357 LLKAQQQNK----FKPM-FSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 357 ~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
+........ ..|+ ..+|..+...|...|++++|.+.|++.....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 191 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 111111100 0111 2355667778888888888888888887654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.03 E-value=1.7e-09 Score=94.57 Aligned_cols=265 Identities=6% Similarity=-0.108 Sum_probs=177.4
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCh-hhhHHHHHH---HHh-------cCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012577 105 AGNNVKKAEEVFNRMKDKGFPVTS-FACNQLLIL---YKR-------LDK-KKVADVLLLMEKENVKLTQFSYKILIDIK 172 (460)
Q Consensus 105 ~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~ll~~---~~~-------~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 172 (460)
..+..++|++++++.++.. |+. ..|+..-.. ... .+. .++...++...+.. +.+...|..+..++
T Consensus 41 ~~~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~ 117 (334)
T d1dcea1 41 AGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (334)
T ss_dssp TTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHH
Confidence 3334467777777776653 333 233222211 111 122 56777777777654 55666777776666
Q ss_pred hhcC--ChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 012577 173 GQSN--DLTGMDQVVEAMKSEGIEPDSSTQA-ILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKAD 249 (460)
Q Consensus 173 ~~~~--~~~~a~~~~~~m~~~g~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 249 (460)
...+ ++++|...++++.+.. +++...+. .....+...+.+++|+..++.+.+.++. +...|..+..++...|+++
T Consensus 118 ~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~ 195 (334)
T d1dcea1 118 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 195 (334)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCC
T ss_pred HHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHH
Confidence 5554 5789999999988764 45566654 4446777789999999999988887654 6788888899999999888
Q ss_pred HHHHHHHHhcc-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012577 250 QVARIWKLCES-NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAES 328 (460)
Q Consensus 250 ~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 328 (460)
+|...+..... .| ........+...+..+++...+........ ++...+..++..+...|+..+|...+.+....
T Consensus 196 ~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 271 (334)
T d1dcea1 196 DSGPQGRLPENVLL---KELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESCKELQELEPE 271 (334)
T ss_dssp CSSSCCSSCHHHHH---HHHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhHHhHH---HHHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 77654433222 11 112233445566777788888888776543 35566677777888889999999998888765
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012577 329 GCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYA 381 (460)
Q Consensus 329 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (460)
. +.+..++..+...+...|++++|.+.++++.+.++. +...|..+...+.
T Consensus 272 ~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~--~~~y~~~L~~~~~ 321 (334)
T d1dcea1 272 N-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM--RAAYLDDLRSKFL 321 (334)
T ss_dssp C-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHH
T ss_pred C-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc--cHHHHHHHHHHHh
Confidence 3 335677888889999999999999999999886532 2345555544443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=9.1e-08 Score=79.87 Aligned_cols=89 Identities=4% Similarity=-0.221 Sum_probs=39.6
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 012577 167 ILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELG 246 (460)
Q Consensus 167 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 246 (460)
.+..+|.+.|++++|++.|++..+.. +-+..+|+.+..+|.+.|++++|+..|+++.+.... +..++..+..+|...|
T Consensus 42 ~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g 119 (259)
T d1xnfa_ 42 ERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGG 119 (259)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHHHHh
Confidence 33444444444444444444444332 223444444444444444444444444444443221 2233444444444444
Q ss_pred ChhHHHHHHHH
Q 012577 247 KADQVARIWKL 257 (460)
Q Consensus 247 ~~~~a~~~~~~ 257 (460)
+++.|...|+.
T Consensus 120 ~~~~A~~~~~~ 130 (259)
T d1xnfa_ 120 RDKLAQDDLLA 130 (259)
T ss_dssp CHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 44444444443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.81 E-value=1.9e-07 Score=79.27 Aligned_cols=86 Identities=12% Similarity=0.027 Sum_probs=39.5
Q ss_pred cCCHHHHHHHHHHHHhc----ccCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHH
Q 012577 277 LNKVEEAEAVFKRMSKT----WKKL-STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIG------PLAWDALVKLHV 345 (460)
Q Consensus 277 ~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~ 345 (460)
.|++++|++.+++..+. +..+ ...++..+...+...|++++|...++++........ ...+...+..+.
T Consensus 131 ~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 210 (290)
T d1qqea_ 131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL 210 (290)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHH
Confidence 45555555555544321 0000 123345555566666666666666666554321110 011223333444
Q ss_pred cCCChhhHHHHHHHHHH
Q 012577 346 EGGEVEKADSILLKAQQ 362 (460)
Q Consensus 346 ~~~~~~~a~~~~~~~~~ 362 (460)
..|+++.|...+++..+
T Consensus 211 ~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 211 AATDAVAAARTLQEGQS 227 (290)
T ss_dssp HTTCHHHHHHHHHGGGC
T ss_pred HhccHHHHHHHHHHHHH
Confidence 55666666666555543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=1.5e-06 Score=68.40 Aligned_cols=142 Identities=12% Similarity=0.015 Sum_probs=91.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh
Q 012577 271 IEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEV 350 (460)
Q Consensus 271 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 350 (460)
...+...|+++.|++.|.++. .|+..+|..+...|...|++++|.+.|++.++.. +.+...|..+..+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 344556677777777766532 3456666677777777777777777777777654 44566677777777777777
Q ss_pred hhHHHHHHHHHHhCCC-------------CcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 012577 351 EKADSILLKAQQQNKF-------------KPM-FSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYI 416 (460)
Q Consensus 351 ~~a~~~~~~~~~~~~~-------------~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 416 (460)
++|.+.|++......- .++ ..++..+..++.+.|++++|.+.+....+....+........+..+.
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~ 166 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 166 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 7777777766542110 011 23455667788899999999999998887655554444554444443
Q ss_pred h
Q 012577 417 N 417 (460)
Q Consensus 417 ~ 417 (460)
+
T Consensus 167 ~ 167 (192)
T d1hh8a_ 167 K 167 (192)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.67 E-value=6.1e-05 Score=62.35 Aligned_cols=225 Identities=13% Similarity=0.041 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 012577 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVS----GGRKEKAEAMLKEMEGDNLKEHRWTCRL 237 (460)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (460)
+..+..|...+...+|+++|++.|++..+.| +...+..|...|.. ..++..|...+......+.. .....
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~---~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS---NGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc---chhhc
Confidence 4455666667777888888888888887765 45566666666665 56778888888877766532 33334
Q ss_pred HHHHHHh----cCChhHHHHHHHHhccCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHH
Q 012577 238 LLPLYAE----LGKADQVARIWKLCESNPWLDVCMAAIEAWGK----LNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVY 309 (460)
Q Consensus 238 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 309 (460)
+...+.. ..+.+.|...++.............+...+.. ......+...+...... .+...+..|...|
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~ 152 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLY 152 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhh
Confidence 4444433 45667777777766555444444444333332 34455666666655543 3556677777777
Q ss_pred Hh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012577 310 AD----HKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVE----GGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYA 381 (460)
Q Consensus 310 ~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (460)
.. ..+...+...++...+.| +......+...|.. ..++++|..+|.+..+.. +...+..|...|.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g----~~~a~~~LG~~y~ 225 (265)
T d1ouva_ 153 DAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----NGGGCFNLGAMQY 225 (265)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHH
T ss_pred ccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc----CHHHHHHHHHHHH
Confidence 65 455667777777777765 55556566655554 567888899988886643 2345556666666
Q ss_pred h----cCCHHHHHHHHHHHHHcCCC
Q 012577 382 K----RGDIHSTEKIFHRMRQVGYV 402 (460)
Q Consensus 382 ~----~g~~~~a~~~~~~m~~~~~~ 402 (460)
+ ..+.++|.++|++..+.|..
T Consensus 226 ~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 226 NGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred cCCCCccCHHHHHHHHHHHHHCcCH
Confidence 4 34788899999888888733
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=1.7e-06 Score=67.98 Aligned_cols=126 Identities=13% Similarity=0.017 Sum_probs=72.8
Q ss_pred HHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCchHHH
Q 012577 68 DLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVA 147 (460)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~a~ 147 (460)
..+...|+++.|++.|+++.. ++..+|..+..+|...|++++|++.|++.++.+
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~~--~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld------------------------ 66 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQD--PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD------------------------ 66 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------
T ss_pred HHHHHCCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh------------------------
Confidence 344566777777777776654 556667777777777777777777777776653
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCC------------C--CCC-HHHHHHHHHHHHhCCC
Q 012577 148 DVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEG------------I--EPD-SSTQAILAKHYVSGGR 212 (460)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g------------~--~~~-~~~~~~l~~~~~~~~~ 212 (460)
+-+...|..+..+|.+.|++++|.+.|++..... . .++ ..++..+..++.+.|+
T Consensus 67 -----------p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~ 135 (192)
T d1hh8a_ 67 -----------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 135 (192)
T ss_dssp -----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC
T ss_pred -----------hhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCC
Confidence 2233344444444444444444444444443210 0 000 2344455666777777
Q ss_pred hHHHHHHHHHHHhCCCCC
Q 012577 213 KEKAEAMLKEMEGDNLKE 230 (460)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~ 230 (460)
+++|.+.+....+....+
T Consensus 136 ~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 136 WKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHhcCCCc
Confidence 777777777766654443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=7.6e-07 Score=67.81 Aligned_cols=93 Identities=9% Similarity=-0.045 Sum_probs=66.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 012577 270 AIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGE 349 (460)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 349 (460)
....|.+.|++++|+..|++..+..+. +...|..+...|...|++++|...|+.+++.. +-+..+|..+..++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence 355666777777777777777776543 66677777777777777777777777777753 4456677777777777777
Q ss_pred hhhHHHHHHHHHHhC
Q 012577 350 VEKADSILLKAQQQN 364 (460)
Q Consensus 350 ~~~a~~~~~~~~~~~ 364 (460)
+++|...++++....
T Consensus 94 ~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 94 FRAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcC
Confidence 777777777776654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.58 E-value=1.3e-06 Score=74.10 Aligned_cols=196 Identities=10% Similarity=-0.027 Sum_probs=133.5
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhC----CC-CCCHHH
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSE----GIEP-DSSTQAILAKHYVSGGRKEKAEAMLKEMEGD----NL-KEHRWT 234 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 234 (460)
|......|...|++++|.+.|.+..+. +-++ -..+|..+..+|.+.|++++|...++...+. |- .....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 444567788999999999999887653 2112 2467888999999999999999999877642 11 111345
Q ss_pred HHHHHHHHHh-cCChhHHHHHHHHhcc----CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcC-----H-
Q 012577 235 CRLLLPLYAE-LGKADQVARIWKLCES----NPW----LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLS-----T- 299 (460)
Q Consensus 235 ~~~l~~~~~~-~~~~~~a~~~~~~~~~----~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~- 299 (460)
+..+...|.. .|+++.|...++.... .++ ..++..+...+...|++++|...|+++........ .
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 6666667744 6999999999986543 222 23578889999999999999999999876532211 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C---CHHHHHHHHHHHHc--CCChhhHHHHHHHH
Q 012577 300 KHYTALLKVYADHKMLSKGKDLVKQMAESGCH-I---GPLAWDALVKLHVE--GGEVEKADSILLKA 360 (460)
Q Consensus 300 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~---~~~~~~~li~~~~~--~~~~~~a~~~~~~~ 360 (460)
..+...+..+...|+++.|...++...+.... + .......++.++.. .+.+++|+..|+.+
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 22344556677889999999999988764211 1 12345566666654 23466777766554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=2e-06 Score=61.45 Aligned_cols=91 Identities=5% Similarity=-0.071 Sum_probs=49.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 012577 306 LKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGD 385 (460)
Q Consensus 306 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (460)
...+...|++++|...|+..++.. +.+...|..+..+|.+.|++++|+..+.++++..+ .+...|..+..++...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--DWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhcc--chhhHHHHHHHHHHHccC
Confidence 344455555555555555555542 34455555555555555555555555555554432 234455555555555555
Q ss_pred HHHHHHHHHHHHHc
Q 012577 386 IHSTEKIFHRMRQV 399 (460)
Q Consensus 386 ~~~a~~~~~~m~~~ 399 (460)
+++|+..|++..+.
T Consensus 87 ~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=2.1e-06 Score=61.29 Aligned_cols=93 Identities=9% Similarity=-0.045 Sum_probs=78.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 012577 270 AIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGE 349 (460)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 349 (460)
-...+.+.|++++|+..|++.++..+. +...|..+..+|...|++++|...+....+.+ +.+...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 456677889999999999988887554 77888888999999999999999999988874 6678888889999999999
Q ss_pred hhhHHHHHHHHHHhC
Q 012577 350 VEKADSILLKAQQQN 364 (460)
Q Consensus 350 ~~~a~~~~~~~~~~~ 364 (460)
+++|+..|++..+..
T Consensus 87 ~~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999887654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=6.9e-06 Score=62.28 Aligned_cols=109 Identities=9% Similarity=-0.006 Sum_probs=91.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012577 302 YTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYA 381 (460)
Q Consensus 302 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (460)
+......|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|.+.|+++++.++ -+...|..+..++.
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p--~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--KYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc--cchHHHHHHHHHHH
Confidence 3345667889999999999999999975 66889999999999999999999999999988653 35578999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 012577 382 KRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQA 414 (460)
Q Consensus 382 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 414 (460)
..|++++|...+++..... +-+...+..+..+
T Consensus 90 ~~g~~~eA~~~~~~a~~~~-p~~~~~~~~l~~~ 121 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQEC 121 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 9999999999999999975 4455555555444
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.43 E-value=2.2e-06 Score=68.09 Aligned_cols=96 Identities=9% Similarity=-0.142 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 012577 160 LTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLL 239 (460)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 239 (460)
|+...+......+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|+..++..+. +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 444444555555666666666666665555443 344555555666666666666666666655543221 334444555
Q ss_pred HHHHhcCChhHHHHHHHH
Q 012577 240 PLYAELGKADQVARIWKL 257 (460)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~ 257 (460)
.+|...|++++|...|+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~ 97 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQR 97 (201)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHH
Confidence 555555555555554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.43 E-value=0.00028 Score=58.14 Aligned_cols=218 Identities=16% Similarity=0.022 Sum_probs=112.0
Q ss_pred CHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHH----hhCHHHHHHHHHhcccCCCchhHHHH
Q 012577 23 SRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAK----LRGLQKAESYIQKIPESFRGEVVYRT 98 (460)
Q Consensus 23 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (460)
+|..+..+-..+.+.+++.+|++.|+...+.+ +...+..+..+|.. ..+...|...++..... .+......
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~-~~~~a~~~ 75 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-NYSNGCHL 75 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc-cccchhhc
Confidence 45666677777777788888888888777655 44455556666654 45677777777775543 23333333
Q ss_pred HHHHHHc----CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHh--cCc---hHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012577 99 LLANCVA----GNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKR--LDK---KKVADVLLLMEKENVKLTQFSYKILI 169 (460)
Q Consensus 99 ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~--~~~---~~a~~~~~~~~~~~~~~~~~~~~~li 169 (460)
+...+.. ..+.+.|...++...+.|.. .....+...+.. ... ..+...+..... ..+...+..|.
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~L~ 149 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD---LNDGDGCTILG 149 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH---TTCHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhc---ccccchhhhhh
Confidence 3333332 45667777777777666522 222222222221 111 344444444333 23444555555
Q ss_pred HHHhh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 012577 170 DIKGQ----SNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVS----GGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPL 241 (460)
Q Consensus 170 ~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (460)
..+.. ..+...+...++...+.| +..+...+...|.. ..++++|+..|+...+.|. +..+..|..+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~---~~a~~~LG~~ 223 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAM 223 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhcccC---HHHHHHHHHH
Confidence 55543 334455555555555433 34444444444443 3455566666665555542 2344444444
Q ss_pred HHh----cCChhHHHHHHHH
Q 012577 242 YAE----LGKADQVARIWKL 257 (460)
Q Consensus 242 ~~~----~~~~~~a~~~~~~ 257 (460)
|.. ..+.+.|.++|+.
T Consensus 224 y~~G~g~~~n~~~A~~~~~k 243 (265)
T d1ouva_ 224 QYNGEGVTRNEKQAIENFKK 243 (265)
T ss_dssp HHTTSSSSCCSTTHHHHHHH
T ss_pred HHcCCCCccCHHHHHHHHHH
Confidence 433 2244445555544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.37 E-value=3.4e-06 Score=66.92 Aligned_cols=97 Identities=15% Similarity=-0.034 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012577 264 LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKL 343 (460)
Q Consensus 264 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 343 (460)
...+......|.+.|++++|+..|++.++..+. +...|..+..+|.+.|++++|...|+..++.. +-+..+|..+..+
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~~ 81 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 333444455555666666666666655554432 55556666666666666666666666665532 2245556666666
Q ss_pred HHcCCChhhHHHHHHHHHH
Q 012577 344 HVEGGEVEKADSILLKAQQ 362 (460)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~ 362 (460)
|.+.|++++|...|+++.+
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6666666666666665544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=3e-06 Score=60.71 Aligned_cols=95 Identities=12% Similarity=-0.020 Sum_probs=56.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh---hhHHHHHHHHHHhCCCCcC-HHHHHHHHHH
Q 012577 304 ALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEV---EKADSILLKAQQQNKFKPM-FSSYMLIMDQ 379 (460)
Q Consensus 304 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 379 (460)
.++..+...+++++|.+.|+.....+ +.++.++..+..++.+.++. ++|+.+++++....+ .|+ ...+..+..+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~-~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-KEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccC-CchHHHHHHHHHHH
Confidence 45555666666667777776666653 44566666666666654433 346666666654321 122 2345556666
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 012577 380 YAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 380 ~~~~g~~~~a~~~~~~m~~~~ 400 (460)
|.+.|++++|++.|+++.+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhhHHHHHHHHHHHHhC
Confidence 667777777777777776643
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.27 E-value=5e-06 Score=58.71 Aligned_cols=89 Identities=9% Similarity=-0.042 Sum_probs=52.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC
Q 012577 305 LLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRG 384 (460)
Q Consensus 305 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 384 (460)
+...+.+.|++++|...|+...+.. +-+..+|..+..++.+.|++++|+..|+++.+..+ .+...|..+..+|...|
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccccccccc--ccccchHHHHHHHHHCC
Confidence 3445555666666666666665543 33456666666666666666666666666655432 23445556666666666
Q ss_pred CHHHHHHHHHHH
Q 012577 385 DIHSTEKIFHRM 396 (460)
Q Consensus 385 ~~~~a~~~~~~m 396 (460)
++++|.+.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 666666666554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.26 E-value=0.00087 Score=56.62 Aligned_cols=287 Identities=10% Similarity=0.020 Sum_probs=144.8
Q ss_pred CChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHH
Q 012577 58 FIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLIL 137 (460)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 137 (460)
++......++..|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+. -+..+|..+...
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~ 78 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 78 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC-------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHH
Confidence 3444555667777777888888888877664 666777777788888877776543 155677777777
Q ss_pred HHhcCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 012577 138 YKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAE 217 (460)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 217 (460)
+.+....... .+...+...+......++..|-..|.+++...+++...... ..+...++.++..|++.+ .++..
T Consensus 79 l~~~~e~~la----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~kl~ 152 (336)
T d1b89a_ 79 CVDGKEFRLA----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMR 152 (336)
T ss_dssp HHHTTCHHHH----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHH
T ss_pred HHhCcHHHHH----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hHHHH
Confidence 7666553222 22223334555666778888888899998888888776442 567777888888888764 34444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCc
Q 012577 218 AMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKL 297 (460)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 297 (460)
+.++... ...+. ..++..|.+.+-++++.-++..+.... +++...+.+..+..++....+-..+. .
T Consensus 153 e~l~~~s---~~y~~---~k~~~~c~~~~l~~elv~Ly~~~~~~~-----~A~~~~i~~~~~~~~~~~f~e~~~k~---~ 218 (336)
T d1b89a_ 153 EHLELFW---SRVNI---PKVLRAAEQAHLWAELVFLYDKYEEYD-----NAIITMMNHPTDAWKEGQFKDIITKV---A 218 (336)
T ss_dssp HHHHHHS---TTSCH---HHHHHHHHTTTCHHHHHHHHHHTTCHH-----HHHHHHHHSTTTTCCHHHHHHHHHHC---S
T ss_pred HHHHhcc---ccCCH---HHHHHHHHHcCChHHHHHHHHhcCCHH-----HHHHHHHHcchhhhhHHHHHHHHHcc---C
Confidence 4443321 11121 234556666666655555554432100 01111111111111111111111221 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012577 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIM 377 (460)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 377 (460)
|+..|-..+..|... +.+-...++..+... +.| ..++..+.+.+++.....+++..... + +....+++.
T Consensus 219 N~e~~~~~i~~yL~~-~p~~i~~lL~~v~~~-~d~-----~r~V~~~~k~~~l~li~p~Le~v~~~-n---~~~vn~al~ 287 (336)
T d1b89a_ 219 NVELYYRAIQFYLEF-KPLLLNDLLMVLSPR-LDH-----TRAVNYFSKVKQLPLVKPYLRSVQNH-N---NKSVNESLN 287 (336)
T ss_dssp STHHHHHHHHHHHHH-CGGGHHHHHHHHGGG-CCH-----HHHHHHHHHTTCTTTTHHHHHHHHTT-C---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHHc-CHHHHHHHHHHhccC-CCH-----HHHHHHHHhcCCcHHHHHHHHHHHHc-C---hHHHHHHHH
Confidence 333444444444432 223333333333222 111 33555556667777777777664332 2 234677777
Q ss_pred HHHHhcCCHHH
Q 012577 378 DQYAKRGDIHS 388 (460)
Q Consensus 378 ~~~~~~g~~~~ 388 (460)
..|...++++.
T Consensus 288 ~lyie~~d~~~ 298 (336)
T d1b89a_ 288 NLFITEEDYQA 298 (336)
T ss_dssp HHHHHTTCHHH
T ss_pred HHHhCcchhHH
Confidence 77777777544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.24 E-value=1e-05 Score=57.08 Aligned_cols=91 Identities=14% Similarity=0.017 Sum_probs=74.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 012577 268 MAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEG 347 (460)
Q Consensus 268 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 347 (460)
......+.+.|++++|...|++.....+. +...|..+..++.+.|++++|...++...+.. +.+...+..+...|...
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHC
Confidence 34566778888999999999888886554 67888888888888999999999988888864 55678888888888888
Q ss_pred CChhhHHHHHHHH
Q 012577 348 GEVEKADSILLKA 360 (460)
Q Consensus 348 ~~~~~a~~~~~~~ 360 (460)
|++++|.+.+++.
T Consensus 98 g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 98 HNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999998888765
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=4.6e-06 Score=59.70 Aligned_cols=93 Identities=17% Similarity=0.074 Sum_probs=52.0
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh---HHHHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 012577 167 ILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRK---EKAEAMLKEMEGDNLKEHR-WTCRLLLPLY 242 (460)
Q Consensus 167 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~ 242 (460)
.+++.+...+++++|.+.|++....+ +.+..++..+..++.+.++. ++|+.+|+++...+..|+. .++..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 35555566666666666666666554 45556666666666554433 3466666666554433322 2444555556
Q ss_pred HhcCChhHHHHHHHHhcc
Q 012577 243 AELGKADQVARIWKLCES 260 (460)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~ 260 (460)
.+.|++++|.+.|+.+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 666666666665555433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.17 E-value=0.0014 Score=55.28 Aligned_cols=285 Identities=12% Similarity=0.122 Sum_probs=155.6
Q ss_pred CCCCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHH
Q 012577 20 NDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTL 99 (460)
Q Consensus 20 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l 99 (460)
..++......+...|.+.|.++.|..+|..+. .|..++..+.+.++++.|.+++.+. .+..+|..+
T Consensus 10 ~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~----~~~~~~k~~ 75 (336)
T d1b89a_ 10 NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEV 75 (336)
T ss_dssp TCC----------------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHH
T ss_pred cCCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHc----CCHHHHHHH
Confidence 34566677888888889999999999996432 4667888889999999999988765 456788888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCh
Q 012577 100 LANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDL 178 (460)
Q Consensus 100 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 178 (460)
...+.+......| .+...+...++.....++..|-..|. ++...+++...... .++...++-++..|++.+ .
T Consensus 76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~ 148 (336)
T d1b89a_ 76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-P 148 (336)
T ss_dssp HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-H
T ss_pred HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-h
Confidence 8888887766543 23334444566667788888888888 77778887765432 567778888999888864 3
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCChhH
Q 012577 179 TGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDN--------LKEHRWTCRLLLPLYAELGKADQ 250 (460)
Q Consensus 179 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~ 250 (460)
++.++.+.... + ..|. ..++..|-+.+-+.++.-++..+.... ..++..-....+..+.+..++
T Consensus 149 ~kl~e~l~~~s--~-~y~~---~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~-- 220 (336)
T d1b89a_ 149 QKMREHLELFW--S-RVNI---PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANV-- 220 (336)
T ss_dssp HHHHHHHHHHS--T-TSCH---HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSST--
T ss_pred HHHHHHHHhcc--c-cCCH---HHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCCh--
Confidence 33333333221 1 2221 223344444444444444443332100 011111112223333333333
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 012577 251 VARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGC 330 (460)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 330 (460)
..|-.++..|... +++-...++..+... + | -.-++..+.+.+++.-...+++...+.|
T Consensus 221 --------------e~~~~~i~~yL~~-~p~~i~~lL~~v~~~-~--d---~~r~V~~~~k~~~l~li~p~Le~v~~~n- 278 (336)
T d1b89a_ 221 --------------ELYYRAIQFYLEF-KPLLLNDLLMVLSPR-L--D---HTRAVNYFSKVKQLPLVKPYLRSVQNHN- 278 (336)
T ss_dssp --------------HHHHHHHHHHHHH-CGGGHHHHHHHHGGG-C--C---HHHHHHHHHHTTCTTTTHHHHHHHHTTC-
T ss_pred --------------HHHHHHHHHHHHc-CHHHHHHHHHHhccC-C--C---HHHHHHHHHhcCCcHHHHHHHHHHHHcC-
Confidence 3333333333332 223333333332222 1 1 2335555566777777777777766654
Q ss_pred CCCHHHHHHHHHHHHcCCChhhHHHHH
Q 012577 331 HIGPLAWDALVKLHVEGGEVEKADSIL 357 (460)
Q Consensus 331 ~~~~~~~~~li~~~~~~~~~~~a~~~~ 357 (460)
+..+.+++...|...++++.-.+..
T Consensus 279 --~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 279 --NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 4578888899999988875544443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=6.2e-05 Score=57.44 Aligned_cols=63 Identities=13% Similarity=-0.010 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhC
Q 012577 301 HYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 301 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
+|+.+..+|.+.|++++|...++..++.. |.++.++..+..+|...|++++|...|+++.+.+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 34445555566666666666666665543 3355556666666666666666666666655543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=4.1e-05 Score=55.27 Aligned_cols=93 Identities=13% Similarity=0.071 Sum_probs=43.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcC-----HHHHHHHHHH
Q 012577 305 LLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM-----FSSYMLIMDQ 379 (460)
Q Consensus 305 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~ 379 (460)
+...+.+.|++++|...|.+.++.+ +.+...+..+..+|.+.|++++|.+.++++++..+-.+. ..+|..+...
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555442 334445555555555555555555555554432211111 1233444444
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 012577 380 YAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 380 ~~~~g~~~~a~~~~~~m~~ 398 (460)
+...+++++|++.|++...
T Consensus 89 ~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 5555555555555555444
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=7.5e-05 Score=56.96 Aligned_cols=80 Identities=11% Similarity=-0.073 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 012577 335 LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQA 414 (460)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 414 (460)
.+|+.+..+|.+.|++++|+..++.+++.++ .+...|..+..+|...|++++|+..|++..+.+ |.|......+-..
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDS--NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccc--cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4577788899999999999999999988763 366788999999999999999999999999975 4455555555444
Q ss_pred HHh
Q 012577 415 YIN 417 (460)
Q Consensus 415 ~~~ 417 (460)
..+
T Consensus 140 ~~~ 142 (170)
T d1p5qa1 140 QQR 142 (170)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=2.7e-06 Score=77.89 Aligned_cols=224 Identities=10% Similarity=-0.052 Sum_probs=110.2
Q ss_pred hHHHHHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCch-hHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 012577 42 KALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGE-VVYRTLLANCVAGNNVKKAEEVFNRMK 120 (460)
Q Consensus 42 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~ 120 (460)
+|.+.|+...... +.....+..+...+...|++++| ++++....|+- ..++..-. +.+ ..+..+.+.++...
T Consensus 4 eA~q~~~qA~~l~--p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~-Lw~-~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLK--ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQD-LWN-HAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHH--GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHH-HHH-HHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHH-HHH-HHHHHHHHHHHHhc
Confidence 4667777766543 22345566677777777887776 45543322321 11111110 000 11345666666666
Q ss_pred hCCCCCChhhhHHHHHHHHh--cCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCH
Q 012577 121 DKGFPVTSFACNQLLILYKR--LDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDS 197 (460)
Q Consensus 121 ~~g~~~~~~~~~~ll~~~~~--~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 197 (460)
+....++..-....+..+.. .+. ..+...+....+.. +++...+..+...+.+.|+.+.|...++...... ..
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~ 152 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQ 152 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---HH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HH
Confidence 54433333322222222211 111 33333332222221 3345566777777888888888887777665321 13
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCCHHHHHHHHHHHH
Q 012577 198 STQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES--NPWLDVCMAAIEAWG 275 (460)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~ 275 (460)
.++..+...+...|++++|+..|++..+..+. +...|+.+...+...|+..+|...|.+... .|...++..|...+.
T Consensus 153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 56777788888888889998888888876433 557888888888888888888888877654 556667777776665
Q ss_pred cc
Q 012577 276 KL 277 (460)
Q Consensus 276 ~~ 277 (460)
+.
T Consensus 232 ~~ 233 (497)
T d1ya0a1 232 KA 233 (497)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=3.2e-05 Score=55.89 Aligned_cols=92 Identities=11% Similarity=0.004 Sum_probs=53.7
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-CC-----HHHHHHH
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLK-EH-----RWTCRLL 238 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-----~~~~~~l 238 (460)
+..+...+.+.|++++|++.|.+.++.+ +.+..++..+..+|.+.|++++|+..++++++.... +. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3345566777777777777777777654 445667777777777777777777777776542211 00 1234444
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 012577 239 LPLYAELGKADQVARIWKL 257 (460)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~ 257 (460)
...+...+++++|...|+.
T Consensus 86 g~~~~~~~~~~~A~~~~~k 104 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNK 104 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 4444455555555555543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.97 E-value=0.00034 Score=52.09 Aligned_cols=74 Identities=8% Similarity=-0.062 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 012577 335 LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTL 411 (460)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 411 (460)
.+|..+..+|.+.|++++|++.++.+++.++ .+...|..+..++...|++++|+..|++..+.+ |-|..+...+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p--~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l 141 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK--NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSY 141 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccc--hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4566777888888888888888888877653 456788888888888888888888888888765 4344444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=3.4e-06 Score=77.23 Aligned_cols=225 Identities=11% Similarity=-0.028 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCChHHHHHHHHH
Q 012577 145 KVADVLLLMEKENVKLT-QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDS-STQAILAKHYVSGGRKEKAEAMLKE 222 (460)
Q Consensus 145 ~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (460)
+|.+.|++..+. .|+ ...+..+..++...|++++| |+++... .|+. ..++... .+. ...+..+...++.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~-~Lw-~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQ-DLW-NHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHH-HHH-HHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHH-HHH-HHHHHHHHHHHHH
Confidence 577788777764 344 33556667777777777765 6666643 2321 1122111 111 1124567777777
Q ss_pred HHhCCCCCCHHHHHHHHH--HHHhcCChhHHHHHHHHhcc-C-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcC
Q 012577 223 MEGDNLKEHRWTCRLLLP--LYAELGKADQVARIWKLCES-N-PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLS 298 (460)
Q Consensus 223 ~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 298 (460)
..+....++..-....+. .....+.++.+...+..... . ++...+..+...+.+.|+.+.|...+....... .
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~ 151 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---C 151 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHH---H
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---H
Confidence 776554444332222221 22234555556555543322 2 344567778888888899999988887766532 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 012577 299 TKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMD 378 (460)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (460)
..++..+...+...|++++|...|++..+.. +-+...|+.+...+...|+..+|...|.+..... .|-...+..|..
T Consensus 152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~--~~~~~a~~nL~~ 228 (497)
T d1ya0a1 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK--FPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS--BCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCHHHHHHHHH
Confidence 3567788889999999999999999998873 5567899999999999999999999999887643 466677888877
Q ss_pred HHHhcC
Q 012577 379 QYAKRG 384 (460)
Q Consensus 379 ~~~~~g 384 (460)
.+.+..
T Consensus 229 ~~~~~~ 234 (497)
T d1ya0a1 229 ALSKAL 234 (497)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 776544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.85 E-value=0.00021 Score=54.28 Aligned_cols=76 Identities=13% Similarity=-0.026 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 012577 336 AWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQA 414 (460)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 414 (460)
+|..+..+|.+.|++++|+..++.+++.++ .+...|..+..++...|++++|...|+++.+.. |.+...+..+-..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p--~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDS--ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhccc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 455566677777777777777777776543 445666777777777777777777777777654 4455444444333
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.82 E-value=0.00029 Score=53.53 Aligned_cols=79 Identities=5% Similarity=-0.058 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 012577 334 PLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQ 413 (460)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 413 (460)
...+..+..++.+.|++++|+..+.++++..+ .+...|..+..++.+.|++++|++.|++..+.. +.+...+..+..
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p--~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~ 153 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDP--SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhh--hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455555666666666666666666665442 234556666666666666666666666666654 444444544444
Q ss_pred HH
Q 012577 414 AY 415 (460)
Q Consensus 414 ~~ 415 (460)
+.
T Consensus 154 ~~ 155 (169)
T d1ihga1 154 VK 155 (169)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.82 E-value=0.00026 Score=53.75 Aligned_cols=110 Identities=11% Similarity=-0.096 Sum_probs=76.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcc--------------cC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 012577 267 CMAAIEAWGKLNKVEEAEAVFKRMSKTW--------------KK-LSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCH 331 (460)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~~--------------~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 331 (460)
+......+.+.|++++|+..|.++.+.. .. .....|..+..++.+.|++++|+..++.+++.. +
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p 108 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 108 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-h
Confidence 4455667778888888888887765310 11 133456667778888888888888888888764 5
Q ss_pred CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012577 332 IGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQ 379 (460)
Q Consensus 332 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (460)
.+...|..+..++.+.|++++|++.|+++.+..+ .+......+..+
T Consensus 109 ~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p--~n~~~~~~l~~~ 154 (169)
T d1ihga1 109 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP--EDKAIQAELLKV 154 (169)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Confidence 5777888888888888888888888888877543 233344444333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.80 E-value=0.00042 Score=51.56 Aligned_cols=73 Identities=12% Similarity=-0.001 Sum_probs=51.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 012577 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDAL 340 (460)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 340 (460)
+|+.+..+|.+.|++++|++.++..++.++. +..+|..+..++...|++++|...|+...+.. |-|..+...+
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l 141 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSY 141 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 5566777777788888888888877776543 67778888888888888888888888877753 2344444443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.80 E-value=0.00041 Score=53.05 Aligned_cols=123 Identities=11% Similarity=0.091 Sum_probs=77.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 012577 269 AAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGG 348 (460)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 348 (460)
.........|++++|.+.|...+.....+ .. ......+.+...-..+... ....+..+...+.+.|
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~-~l---------~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGP-VL---------DDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSS-TT---------GGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCccc-cc---------ccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCC
Confidence 34456677788888888888777642111 00 0000001111111111111 2345677788888888
Q ss_pred ChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCccHHH
Q 012577 349 EVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ-----VGYVARFKQ 407 (460)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~ 407 (460)
++++|...++.+.+.++ -+...|..++.+|.+.|+.++|++.|+++.+ .|+.|+..+
T Consensus 82 ~~~~Al~~~~~al~~~P--~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 82 RASAVIAELEALTFEHP--YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp CHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CchHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 88888888888887664 3556888888888888888888888888743 578887654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.79 E-value=0.0004 Score=53.09 Aligned_cols=127 Identities=10% Similarity=-0.006 Sum_probs=88.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 012577 304 ALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKR 383 (460)
Q Consensus 304 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (460)
.........|++++|...|......- +-+.. ......+-+...-..+... ....+..+..++.+.
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~-rG~~l---------~~~~~~~w~~~~r~~l~~~-----~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREW-RGPVL---------DDLRDFQFVEPFATALVED-----KVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-CSSTT---------GGGTTSTTHHHHHHHHHHH-----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC-ccccc---------ccCcchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHC
Confidence 34456777899999999999887741 11110 0111111122222222111 135678889999999
Q ss_pred CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--chhhhHHHH-----HhCCCCcCHHHHHHHHH
Q 012577 384 GDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PAYGIRDRM-----RADNVFPNKALAAQVAQ 446 (460)
Q Consensus 384 g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m-----~~~~~~p~~~~~~~l~~ 446 (460)
|++++|+..++++.+.. +-+...|..++.+|.+.|+ .+...|++. .+.|+.|+..+..+...
T Consensus 81 g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~ 149 (179)
T d2ff4a2 81 GRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 149 (179)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 99999999999999987 7789999999999999999 577777665 34699999988776643
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.78 E-value=0.00048 Score=52.17 Aligned_cols=99 Identities=13% Similarity=0.003 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHhcccCCC-------------ChhhhHHHHHHHHHhhCHHHHHHHHHhcccCC-
Q 012577 25 AEIALAMANLRTRRMYGKALQLSEWLETNKKLDF-------------IERDYASCLDLIAKLRGLQKAESYIQKIPESF- 90 (460)
Q Consensus 25 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 90 (460)
..+......+.+.|++.+|+..|+.....-...+ ....|..+..+|.+.|++++|+..++......
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p 95 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 95 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence 3455566678888999999999877654211111 11234456666777777777777777765543
Q ss_pred CchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 012577 91 RGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKG 123 (460)
Q Consensus 91 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 123 (460)
.+..+|..+..++...|++++|...|++.++..
T Consensus 96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 356677777777777777777777777777653
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.55 E-value=0.00032 Score=51.59 Aligned_cols=69 Identities=9% Similarity=-0.064 Sum_probs=35.9
Q ss_pred ccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012577 276 KLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADH----------KMLSKGKDLVKQMAESGCHIGPLAWDALVKLHV 345 (460)
Q Consensus 276 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (460)
+.+.+++|...|+...+..+. +...+..+..+|... +.+++|...|+..++.. |.+..+|..+..+|.
T Consensus 9 r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHH
Confidence 344456666666666655433 455555555555432 23345555555555542 334555555555554
Q ss_pred c
Q 012577 346 E 346 (460)
Q Consensus 346 ~ 346 (460)
.
T Consensus 87 ~ 87 (145)
T d1zu2a1 87 S 87 (145)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.43 E-value=0.00078 Score=45.21 Aligned_cols=76 Identities=11% Similarity=-0.003 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhCCCC----cC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH
Q 012577 335 LAWDALVKLHVEGGEVEKADSILLKAQQQNKFK----PM-FSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQ 409 (460)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 409 (460)
..+-.+...+.+.|++++|+..|+++.+..+.. ++ ..++..+..++.+.|++++|++.++++.+.. |-+..+++
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a~~ 84 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHHHH
Confidence 334456666777777777777777766542211 11 3456677777778888888888888777765 44455555
Q ss_pred HH
Q 012577 410 TL 411 (460)
Q Consensus 410 ~l 411 (460)
.+
T Consensus 85 Nl 86 (95)
T d1tjca_ 85 NL 86 (95)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.33 E-value=0.00026 Score=57.97 Aligned_cols=124 Identities=6% Similarity=-0.039 Sum_probs=79.9
Q ss_pred HHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhH
Q 012577 274 WGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKA 353 (460)
Q Consensus 274 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 353 (460)
..+.|++++|+..+++.++..+. |...+..++..|+..|++++|...++...+.. +-+...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence 45678999999999999887665 78889999999999999999999999988863 22334444444443322222222
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 354 DSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
..-..... ..+-.++...+......+.+.|+.++|.+.++++.+..
T Consensus 84 ~~~~~~~~-~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 84 AQGAATAK-VLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TTSCCCEE-CCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhhh-cccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 11111000 00111223334445566788899999999999988753
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.32 E-value=0.00069 Score=49.72 Aligned_cols=71 Identities=7% Similarity=-0.063 Sum_probs=44.4
Q ss_pred HHhcccchhHHHHHHHHHhcccCCCChhhhHHHHHHHHHhh----------CHHHHHHHHHhcccCCC-chhHHHHHHHH
Q 012577 34 LRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLR----------GLQKAESYIQKIPESFR-GEVVYRTLLAN 102 (460)
Q Consensus 34 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~a~~~~~~~~~~~~-~~~~~~~ll~~ 102 (460)
+-+.+.+++|+..|+...... |.+...+..+..+|...+ .+++|+..|++..+..| +..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHH
Confidence 344566788888888887765 556677777777776443 34566666666554433 45556666655
Q ss_pred HHcC
Q 012577 103 CVAG 106 (460)
Q Consensus 103 ~~~~ 106 (460)
|...
T Consensus 85 y~~~ 88 (145)
T d1zu2a1 85 YTSF 88 (145)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 5543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.28 E-value=0.0018 Score=48.12 Aligned_cols=93 Identities=9% Similarity=-0.070 Sum_probs=61.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC-CC----------CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhCC----CCcC-
Q 012577 306 LKVYADHKMLSKGKDLVKQMAESGC-HI----------GPLAWDALVKLHVEGGEVEKADSILLKAQQQNK----FKPM- 369 (460)
Q Consensus 306 i~~~~~~g~~~~a~~~~~~~~~~~~-~~----------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~~- 369 (460)
...+.+.|++++|+..|++.++..- .| ....|+.+..+|.+.|++++|.+.+++.....+ ..++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 3344556677777777766654210 01 135677778888888888888888877764321 1111
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 370 ----FSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398 (460)
Q Consensus 370 ----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 398 (460)
...+..+..+|...|++++|++.|++..+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22466778899999999999999998775
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.27 E-value=0.00035 Score=57.19 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=34.0
Q ss_pred HhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 012577 172 KGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGD 226 (460)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (460)
..+.|++++|++.+++.++.. +.|...+..+...++..|++++|...|+...+.
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 345566666666666666554 445666666666666666666666666666554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.10 E-value=0.0074 Score=44.59 Aligned_cols=93 Identities=11% Similarity=-0.069 Sum_probs=65.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcccC-c----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-
Q 012577 271 IEAWGKLNKVEEAEAVFKRMSKTWKK-L----------STKHYTALLKVYADHKMLSKGKDLVKQMAES-----GCHIG- 333 (460)
Q Consensus 271 i~~~~~~~~~~~a~~~~~~m~~~~~~-p----------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~- 333 (460)
...+...|++++|+..|++.++.... | ....|+.+..+|...|++++|...+++.++. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 44555667788888888777653211 1 1356778888889999999998888887642 11121
Q ss_pred ----HHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Q 012577 334 ----PLAWDALVKLHVEGGEVEKADSILLKAQQQ 363 (460)
Q Consensus 334 ----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (460)
...+..+..+|...|++++|.+.|+++.+.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 235677888999999999999999987653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.95 E-value=0.0019 Score=43.17 Aligned_cols=68 Identities=13% Similarity=-0.134 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHhcccchhHHHHHHHHHhcccCCC-----ChhhhHHHHHHHHHhhCHHHHHHHHHhcccC
Q 012577 22 LSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDF-----IERDYASCLDLIAKLRGLQKAESYIQKIPES 89 (460)
Q Consensus 22 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (460)
+|.+.+..+-..+.+.|++.+|+..|+...+..+..+ ...++..+..++.+.|++++|...++++.+.
T Consensus 3 Lsaddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 4566666677777777777777777766554321110 1223444444455555555555555544433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.23 E-value=0.069 Score=37.76 Aligned_cols=16 Identities=19% Similarity=-0.087 Sum_probs=8.1
Q ss_pred ChhHHHHHHHHHHhCC
Q 012577 177 DLTGMDQVVEAMKSEG 192 (460)
Q Consensus 177 ~~~~a~~~~~~m~~~g 192 (460)
|+++|.++|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4455555555555444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.17 E-value=0.076 Score=37.54 Aligned_cols=16 Identities=19% Similarity=-0.078 Sum_probs=10.8
Q ss_pred ChHHHHHHHHHHHhCC
Q 012577 212 RKEKAEAMLKEMEGDN 227 (460)
Q Consensus 212 ~~~~a~~~~~~~~~~~ 227 (460)
++++|+..|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4667777777766665
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.68 E-value=1.2 Score=38.69 Aligned_cols=350 Identities=9% Similarity=0.021 Sum_probs=158.3
Q ss_pred HHHHHHhcccCCCChhhhHHHHHHHHHhhCHHHHHHHHHhcccCCCchhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 012577 46 LSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFP 125 (460)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~ 125 (460)
+...+.+.+..|.........+..+++.++++.....+..- ..+...--....+....|+.++|...+..+-..|.
T Consensus 58 i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~~~~---p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~- 133 (450)
T d1qsaa1 58 VTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPEK---PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK- 133 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCSC---CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-
T ss_pred HHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhccCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-
Confidence 33334444333333344455667777778877655544322 13343333455667778888888888777765542
Q ss_pred CChhhhHHHHHHHHhcCc---hHHHHHHHHHHHcC-----------CCCCH-HHHHHHHHHHhhcCChhHHHHHHHHHHh
Q 012577 126 VTSFACNQLLILYKRLDK---KKVADVLLLMEKEN-----------VKLTQ-FSYKILIDIKGQSNDLTGMDQVVEAMKS 190 (460)
Q Consensus 126 ~~~~~~~~ll~~~~~~~~---~~a~~~~~~~~~~~-----------~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~ 190 (460)
..+..+..++..+...|. +....-+..+...| ++++. ......+.... +...+.... ..
T Consensus 134 ~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~---~p~~~~~~~---~~ 207 (450)
T d1qsaa1 134 SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFA---RT 207 (450)
T ss_dssp CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHH---HH
T ss_pred CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHh---ChHhHHHHH---hc
Confidence 244455555555555443 22222222222222 01111 11111111111 111111111 11
Q ss_pred CCCCCCHHHHHHHHHHHHh--CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH----HHhcCChhHHHHHHHHhcc-CCC
Q 012577 191 EGIEPDSSTQAILAKHYVS--GGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPL----YAELGKADQVARIWKLCES-NPW 263 (460)
Q Consensus 191 ~g~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~-~~~ 263 (460)
. .++......+..++.+ ..+.+.|..++......... +......+-.. ....+..+.+...+..... ..+
T Consensus 208 ~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 284 (450)
T d1qsaa1 208 T--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS 284 (450)
T ss_dssp S--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC
T ss_pred C--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccc
Confidence 1 2233332223333222 24566666666665543222 22222222211 2233445555555554433 223
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012577 264 LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKL 343 (460)
Q Consensus 264 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 343 (460)
.....-.+......++...+...++.|..... ....-.--+..++...|+.+.|...|..+... ++ .|..|...
T Consensus 285 ~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~-~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LAa~ 358 (450)
T d1qsaa1 285 TSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAAQ 358 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHhcCcccc-cHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHHHH
Confidence 33333344444556677777777766654321 13334445566677777777777777766532 22 22222111
Q ss_pred HHcCCCh-hhHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 012577 344 HVEGGEV-EKADSILLKAQQQNKFKPMF----SSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINA 418 (460)
Q Consensus 344 ~~~~~~~-~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 418 (460)
+.|.. .-.. ......+.. ..-..-+..+...|....|...|..+.+.. +......+.....+.
T Consensus 359 --~Lg~~~~~~~-------~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~---~~~~~~~la~lA~~~ 426 (450)
T d1qsaa1 359 --RIGEEYELKI-------DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK---SKTEQAQLARYAFNN 426 (450)
T ss_dssp --HTTCCCCCCC-------CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHT
T ss_pred --HcCCCCCCCc-------CCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC---CHHHHHHHHHHHHHC
Confidence 11110 0000 000000000 001123456777888888888888776532 344566667777777
Q ss_pred CCchhhhH
Q 012577 419 KTPAYGIR 426 (460)
Q Consensus 419 g~~~~~~~ 426 (460)
|....+|.
T Consensus 427 g~~~~aI~ 434 (450)
T d1qsaa1 427 QWWDLSVQ 434 (450)
T ss_dssp TCHHHHHH
T ss_pred CChhHHHH
Confidence 77555553
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.67 E-value=0.38 Score=32.78 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=31.9
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 012577 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNL 228 (460)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 228 (460)
.+..++...+.|.-++-.++++.+.+.+ +|++...-.+..+|-+.|...++..++.+.-+.|+
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 3344445555555555555555544433 45555555555555555555555555555555554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.92 E-value=1.8 Score=37.60 Aligned_cols=53 Identities=4% Similarity=-0.034 Sum_probs=43.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHH
Q 012577 305 LLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKA 360 (460)
Q Consensus 305 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 360 (460)
-+..+...|....|...+..+.+. .+......+.....+.|.++.|+......
T Consensus 387 ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 387 RVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 356677899999999999988764 35667778888889999999999887665
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.39 E-value=0.73 Score=31.45 Aligned_cols=67 Identities=7% Similarity=-0.088 Sum_probs=36.4
Q ss_pred cCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCChhhHHHHHHHHHHhC
Q 012577 297 LSTKHYTALLKVYADHK---MLSKGKDLVKQMAESGCHIGP-LAWDALVKLHVEGGEVEKADSILLKAQQQN 364 (460)
Q Consensus 297 p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (460)
|+..|--....++.+.. +..+++.+++++.+.+ +.+. ..+-.|..+|.+.|++++|.+.++.+.+..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 44445455555555443 3445666666665542 2222 344455556666666666666666666543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.93 E-value=0.86 Score=30.99 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012577 373 YMLIMDQYAKRGDIHSTEKIFHRMRQVG 400 (460)
Q Consensus 373 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 400 (460)
.-.+..+|.+.|...++-+++.+..+.|
T Consensus 123 llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 123 LVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 3333344444444444444444444433
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.80 E-value=0.68 Score=31.59 Aligned_cols=47 Identities=9% Similarity=0.060 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcccCCCc--hhHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 012577 76 LQKAESYIQKIPESFRG--EVVYRTLLANCVAGNNVKKAEEVFNRMKDK 122 (460)
Q Consensus 76 ~~~a~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 122 (460)
+++++.+|+.+....|. ...+-.|.-+|.+.|++++|.+.++.+++.
T Consensus 54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 44555555554433332 233444455555666666666666666554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.02 E-value=1.2 Score=28.59 Aligned_cols=46 Identities=9% Similarity=0.016 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcccCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012577 282 EAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAE 327 (460)
Q Consensus 282 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 327 (460)
+..+-++.+...+..|++....+.+.+|.+.+++..|..+++..+.
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3334444444444445555555555555555555555555544443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.72 E-value=2.3 Score=27.26 Aligned_cols=44 Identities=14% Similarity=0.023 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 012577 318 GKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQ 361 (460)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 361 (460)
+.+-++.+......|++....+.+++|-+.+++..|.++|+.+.
T Consensus 25 ~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK 68 (105)
T d1v54e_ 25 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 68 (105)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444444444444455555544555555555444443
|
| >d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: MIF4G domain-like domain: Programmed cell death 4, PDCD4 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.10 E-value=5.8 Score=27.09 Aligned_cols=65 Identities=12% Similarity=0.152 Sum_probs=41.6
Q ss_pred hHHHHHHHHHhhCHHHHHHHHHhcccC-CCchhHHHHHHHHHHcCCCH--HHHHHHHHHHHhCCCCCC
Q 012577 63 YASCLDLIAKLRGLQKAESYIQKIPES-FRGEVVYRTLLANCVAGNNV--KKAEEVFNRMKDKGFPVT 127 (460)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~--~~a~~~~~~m~~~g~~~~ 127 (460)
...++.-|...|+.++|.+.++++... .....++..+..+.-+.+.- +.+.+++..+...|+-+.
T Consensus 10 ~~~ll~EY~~~~D~~Ea~~~l~eL~~p~~~~e~V~~~i~~ale~~~~~r~~~~~~Ll~~L~~~~~is~ 77 (129)
T d2nsza1 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCCCH
Confidence 456778888888888888888887642 12234445555555555543 335678888888765433
|
| >d1u9pa1 a.43.1.1 (A:72-107) Arc repressor {Salmonella bacteriophage P22 [TaxId: 10754]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Ribbon-helix-helix superfamily: Ribbon-helix-helix family: Arc/Mnt-like phage repressors domain: Arc repressor species: Salmonella bacteriophage P22 [TaxId: 10754]
Probab=80.98 E-value=1.3 Score=21.09 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 012577 354 DSILLKAQQQNKFKPMFSSYMLIMDQYAKRGD 385 (460)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (460)
..+.++..+.+|...+...|..++..+.+.|+
T Consensus 4 ldlvrkvaeeng~s~ns~iy~~vmes~kkegr 35 (36)
T d1u9pa1 4 LDLVRKVAEENGRSVNSEIYQRVMESFKKEGR 35 (36)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCcchhHHHHHHHHHHHHHccC
Confidence 34444444555555666666666666655554
|