Citrus Sinensis ID: 012612
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 460 | 2.2.26 [Sep-21-2011] | |||||||
| O48593 | 567 | Asparagine--tRNA ligase, | yes | no | 1.0 | 0.811 | 0.792 | 0.0 | |
| Q6MEC9 | 467 | Asparagine--tRNA ligase O | yes | no | 0.973 | 0.959 | 0.602 | 1e-165 | |
| B0JN99 | 454 | Asparagine--tRNA ligase O | yes | no | 0.928 | 0.940 | 0.610 | 1e-157 | |
| A3DBI2 | 464 | Asparagine--tRNA ligase O | yes | no | 0.939 | 0.931 | 0.578 | 1e-154 | |
| P52276 | 462 | Asparagine--tRNA ligase O | N/A | no | 0.928 | 0.924 | 0.589 | 1e-153 | |
| Q8DG51 | 462 | Asparagine--tRNA ligase O | yes | no | 0.939 | 0.935 | 0.597 | 1e-152 | |
| A0PY64 | 463 | Asparagine--tRNA ligase O | yes | no | 0.932 | 0.926 | 0.565 | 1e-152 | |
| P58692 | 463 | Asparagine--tRNA ligase O | yes | no | 0.941 | 0.935 | 0.580 | 1e-151 | |
| Q899M9 | 463 | Asparagine--tRNA ligase O | yes | no | 0.967 | 0.961 | 0.540 | 1e-151 | |
| B2UXS0 | 464 | Asparagine--tRNA ligase O | yes | no | 0.926 | 0.918 | 0.556 | 1e-150 |
| >sp|O48593|SYNO_ARATH Asparagine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SYNO PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 812 bits (2097), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/487 (79%), Positives = 425/487 (87%), Gaps = 27/487 (5%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
GSKVGEFRKKL+I +VKGG +EGL RVG + + GWVRTLR+QSSVTFIE+NDGSCLSN
Sbjct: 81 FGSKVGEFRKKLRIAEVKGGADEGLSRVGQSLNIMGWVRTLRSQSSVTFIEINDGSCLSN 140
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+QCVMTSDAEGYDQV+SG I TGAS+ +QG +V SQG+KQKVELKV KI++VG+ D SYP
Sbjct: 141 LQCVMTSDAEGYDQVESGSILTGASVSVQGTIVASQGTKQKVELKVEKIIVVGECDSSYP 200
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRN LAYATHKFFQE+GF+W++SPIITASDC
Sbjct: 201 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFVWVASPIITASDC 260
Query: 181 EGAGEQFCVTTL---------------------------DFFEKPAFLTVSGQLNAETYA 213
EGAGEQFCVTTL DFF KPAFLTVSGQLN ETYA
Sbjct: 261 EGAGEQFCVTTLIPSSHENTDTSIDAIPKTKGGLIDWSQDFFGKPAFLTVSGQLNGETYA 320
Query: 214 TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 273
TALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV+Y+LDN
Sbjct: 321 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMACATAYLQYVVKYVLDN 380
Query: 274 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 333
CKEDM+FF+TWIEKGII RLS VAE++F+QL YTDAIE+L+KA KKF+F VKWG DLQSE
Sbjct: 381 CKEDMEFFDTWIEKGIIRRLSDVAEKEFLQLGYTDAIEILLKANKKFDFPVKWGLDLQSE 440
Query: 334 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREER 393
HERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPRIGELIGGSQREER
Sbjct: 441 HERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRIGELIGGSQREER 500
Query: 394 LEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 453
LE LE RLDELKLN++SYWWYLDLR YGSVPHAGFGLGFERLVQF TG++NIRD IPFPR
Sbjct: 501 LEVLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFVTGIDNIRDVIPFPR 560
Query: 454 TPGSVEF 460
TP S EF
Sbjct: 561 TPASAEF 567
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Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 2 |
| >sp|Q6MEC9|SYN_PARUW Asparagine--tRNA ligase OS=Protochlamydia amoebophila (strain UWE25) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 582 bits (1501), Expect = e-165, Method: Compositional matrix adjust.
Identities = 282/468 (60%), Positives = 346/468 (73%), Gaps = 20/468 (4%)
Query: 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE 70
+ KI ++G E +G I + GWVRT+R Q + TFIE+NDGS LSN Q + T D
Sbjct: 2 RTKIKSLRGTTPEVRALIGHDITLKGWVRTVRNQKTFTFIEINDGSTLSNFQIIATPDIA 61
Query: 71 GYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS-YPIQKKRVSRE 129
GYDQ+ + L +TG S+ G +V S G +Q +E++ I ++GK DP Y +QKKR + E
Sbjct: 62 GYDQLINQL-STGVSVSAIGTIVESPGKEQNLEMQATAITIIGKCDPEVYLLQKKRHTFE 120
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
FLR+ AHLRPRTNT GAV RVRNALA+ATH+FFQ+ GF++I +PIIT SDCEGAG+ F V
Sbjct: 121 FLRSIAHLRPRTNTIGAVTRVRNALAFATHQFFQKRGFLYIHTPIITGSDCEGAGKMFQV 180
Query: 190 TTLD-----------------FFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSN 232
TTLD FF KP +LTVSGQLN E YA ALS+VYTFGPTFRAENSN
Sbjct: 181 TTLDQNNPARTPEGRVDYTQDFFGKPTYLTVSGQLNGEIYACALSDVYTFGPTFRAENSN 240
Query: 233 TSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDR 292
TSRHLAEFWMIEPE+AFADL D+M CA YL+Y+++Y+LDNC+EDM+FFN + +I R
Sbjct: 241 TSRHLAEFWMIEPEMAFADLNDNMDCAEDYLKYILKYVLDNCQEDMEFFNKHVATDLISR 300
Query: 293 LSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSD 352
L V F + SYT A+ +L KA KKFE+ VKWG DLQSEHER+L EE FG PVI++D
Sbjct: 301 LEHVINTSFERASYTYAVRILEKADKKFEYPVKWGLDLQSEHERFLAEEFFGK-PVILTD 359
Query: 353 YPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYW 412
YPK+IKAFYMR N+D +TVAAMD+LVP++GE+IGGSQREERL LE +L E L + YW
Sbjct: 360 YPKDIKAFYMRTNEDNKTVAAMDVLVPKVGEIIGGSQREERLSVLESKLKEFNLPAEEYW 419
Query: 413 WYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 460
WYL+LR +GSVPH+GFG GFERLVQF TG+ENIRD IPFPR PG +F
Sbjct: 420 WYLELRKFGSVPHSGFGAGFERLVQFTTGMENIRDVIPFPRHPGKADF 467
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Protochlamydia amoebophila (strain UWE25) (taxid: 264201) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|B0JN99|SYN_MICAN Asparagine--tRNA ligase OS=Microcystis aeruginosa (strain NIES-843) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 554 bits (1427), Expect = e-157, Method: Compositional matrix adjust.
Identities = 268/439 (61%), Positives = 325/439 (74%), Gaps = 12/439 (2%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ V GWVRT R TF+EVNDGS L+N+Q ++ Y+ V I+TGA+I + GN
Sbjct: 18 VTVQGWVRTKRELKEFTFLEVNDGSSLANLQVILEPTLPDYENVLKT-ISTGAAIAVSGN 76
Query: 92 VVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVR 151
+VPS G Q +ELK +I L G P YP+QKKR S EFLRT AHLR RTNT GAV RVR
Sbjct: 77 LVPSPGKGQNIELKAAEITLYGDCPPDYPLQKKRHSFEFLRTIAHLRARTNTLGAVMRVR 136
Query: 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLD----------FFEKPAFL 201
NA A A H FFQE GFIW+ +PIITA+DCEGAGE F VT+LD FF K A+L
Sbjct: 137 NACATAIHSFFQEKGFIWVHTPIITANDCEGAGELFTVTSLDLKKPANFAEDFFGKRAYL 196
Query: 202 TVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATA 261
TVSGQL AE A ALSNVYTFGPTFRAENSNTSRHLAEFWM+EPE+AF DL+ D A A
Sbjct: 197 TVSGQLQAEVMAMALSNVYTFGPTFRAENSNTSRHLAEFWMVEPEMAFCDLEGDQDLAEA 256
Query: 262 YLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFE 321
+L+Y+ +++L+NC ED+ FFN I+K ++ + +F +++Y++AIELL KA ++FE
Sbjct: 257 FLKYIFKFVLENCPEDLQFFNERIDKTVLSTAENIVNSEFGRITYSEAIELLEKADRQFE 316
Query: 322 FLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRI 381
F V+WG DLQSEHERYL EE F PVIV++YPK IKAFYMR +D+ +TV+AMD+L P+I
Sbjct: 317 FPVEWGVDLQSEHERYLAEELFKK-PVIVTNYPKTIKAFYMRLDDNNKTVSAMDILAPKI 375
Query: 382 GELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATG 441
GE+IGGSQREERL+ L R+ E +N D WWYLDLR YGSVPHAGFGLGFERLVQF TG
Sbjct: 376 GEIIGGSQREERLDVLIQRMQEQGMNPDDLWWYLDLRRYGSVPHAGFGLGFERLVQFMTG 435
Query: 442 VENIRDAIPFPRTPGSVEF 460
+ NIRD IPFPRTP S +F
Sbjct: 436 MTNIRDVIPFPRTPLSADF 454
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Microcystis aeruginosa (strain NIES-843) (taxid: 449447) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|A3DBI2|SYN_CLOTH Asparagine--tRNA ligase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 544 bits (1401), Expect = e-154, Method: Compositional matrix adjust.
Identities = 262/453 (57%), Positives = 327/453 (72%), Gaps = 21/453 (4%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMT-SDAEGYDQVKSGLITTGA 84
D VG IVVAGWVRT+R + FIE+NDGS N+Q V + + ++ ++ G+
Sbjct: 15 DYVGKEIVVAGWVRTVRDSKAFGFIELNDGSFFKNLQIVFEEKNLPNFKEIAK--LSVGS 72
Query: 85 SIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTF 144
+I G +V + G+KQ ELK KI + G S P YP+QKKR S E+LRT AHLRPRTNTF
Sbjct: 73 AIIAHGELVETPGAKQPFELKATKIEIEGASTPDYPLQKKRHSFEYLRTIAHLRPRTNTF 132
Query: 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLD----------- 193
AV RVR+ LAYA HKFFQE GF+++ +PIIT SD EGAG+ F VTTLD
Sbjct: 133 SAVFRVRSLLAYAIHKFFQERGFVYVHTPIITGSDAEGAGQMFKVTTLDINNPPRKEDGT 192
Query: 194 ------FFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPEL 247
FF++ LTVSGQL ETY+ A N+YTFGPTFRAENSNT+RH AEFWM+EPE+
Sbjct: 193 VDFSKDFFDRETNLTVSGQLEGETYSMAFRNIYTFGPTFRAENSNTARHAAEFWMVEPEI 252
Query: 248 AFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYT 307
AFADL+DDM A L+Y++ Y L+N E+M+FFN +I+ ++DRL+ + DF ++YT
Sbjct: 253 AFADLEDDMELAEDMLKYIINYCLENAPEEMEFFNNFIDNTLLDRLNNIVSSDFAHVTYT 312
Query: 308 DAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD 367
+AI++L KA +KFE+ VKWG DLQ+EHERYLTE+ F PV V+DYPK+IKAFYMR NDD
Sbjct: 313 EAIDILSKADQKFEYPVKWGNDLQTEHERYLTEKVFKK-PVFVTDYPKDIKAFYMRLNDD 371
Query: 368 GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAG 427
+TVAAMD+LVP +GE+IGGSQREERL+YLE R+ EL L + YWWYLDLR YGS HAG
Sbjct: 372 NKTVAAMDLLVPGVGEIIGGSQREERLDYLENRMKELGLKMEDYWWYLDLRRYGSTRHAG 431
Query: 428 FGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 460
FGLGFER + + TG+ NIRD IPFPRT S EF
Sbjct: 432 FGLGFERAIMYITGMSNIRDVIPFPRTVHSAEF 464
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Clostridium thermocellum (strain ATCC 27405 / DSM 1237) (taxid: 203119) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|P52276|SYN_SYNY3 Asparagine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=asnS PE=3 SV=2 | Back alignment and function description |
|---|
Score = 540 bits (1392), Expect = e-153, Method: Compositional matrix adjust.
Identities = 263/446 (58%), Positives = 325/446 (72%), Gaps = 19/446 (4%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
++V GW+RT R +F+EVNDGS L+N+Q V+ YD++ S L TGA++ ++G
Sbjct: 19 VMVQGWLRTKRTLKDFSFVEVNDGSSLANLQVVLDGSLADYDRLLSQL-QTGAALVVEGK 77
Query: 92 VVPSQGSKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARV 150
+ PS G Q+VELK K+ L+G +DP SYP+QKKR S EFLRT HLRPRTNT GAV RV
Sbjct: 78 LAPSPGKGQRVELKATKLELLGGADPGSYPLQKKRHSFEFLRTIGHLRPRTNTIGAVMRV 137
Query: 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLD----------------F 194
RNA A A H+FFQE GF+W+ +PIITASDCEGAG+ F VTTLD F
Sbjct: 138 RNACATAIHQFFQERGFLWVHTPIITASDCEGAGDLFKVTTLDLQRVPKNGEGIDYSQDF 197
Query: 195 FEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKD 254
F K A+LTVSGQL AE A A NVYTFGPTFRAENSNTSRHLAEFWM+EPE+AF DL+
Sbjct: 198 FGKQAYLTVSGQLEAEVMALAFQNVYTFGPTFRAENSNTSRHLAEFWMVEPEMAFCDLEG 257
Query: 255 DMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLI 314
D A +L+Y+ +++L+ C EDM+FF+ I+ ++ + +F L+Y++AI+LL
Sbjct: 258 DRQWAEEFLKYIFKFVLEKCPEDMEFFDQRIDNTVLATADNIINNEFAWLTYSEAIKLLE 317
Query: 315 KAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAM 374
KA +KFE+ V WG DLQSEHERYL E F P IV+DYPK+IKAFYMR NDDG+TVAAM
Sbjct: 318 KADQKFEYPVAWGVDLQSEHERYLAETVFKR-PTIVTDYPKDIKAFYMRLNDDGKTVAAM 376
Query: 375 DMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFER 434
D+L P+IGE+IGGSQREERL+ L R+ E + + WWYLDLR YGSVPHAGFGLGFER
Sbjct: 377 DILAPKIGEIIGGSQREERLDILTQRMQEQGVPEEDLWWYLDLRRYGSVPHAGFGLGFER 436
Query: 435 LVQFATGVENIRDAIPFPRTPGSVEF 460
+VQF TG+ NIRD IPFPRTP + EF
Sbjct: 437 IVQFMTGMANIRDVIPFPRTPMNAEF 462
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Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q8DG51|SYN_THEEB Asparagine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 538 bits (1387), Expect = e-152, Method: Compositional matrix adjust.
Identities = 270/452 (59%), Positives = 321/452 (71%), Gaps = 20/452 (4%)
Query: 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASI 86
+VG I V GWVRT R TF+ +NDGS L+ +Q V+ + L TTGA+
Sbjct: 13 QVGDRITVKGWVRTKRELKECTFVNLNDGSTLAGLQVVIPNTVAAATPTMKDL-TTGAAA 71
Query: 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFG 145
G +V S G Q +EL +I L G +DP +YP+QKKR S EFLRT AHLRPRTNT G
Sbjct: 72 EFTGELVRSPGKNQAIELHAEEIHLWGTADPETYPLQKKRHSFEFLRTIAHLRPRTNTLG 131
Query: 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLD------------ 193
AV RVRNA A A H+FFQE GF+W+ +PIITASDCEGAGE F VTTLD
Sbjct: 132 AVMRVRNACATAIHQFFQERGFLWVHTPIITASDCEGAGELFTVTTLDLTQPPKTPEGKI 191
Query: 194 -----FFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELA 248
FF + A+LTVSGQL AE ATA +NVYTFGPTFRAENSNTSRHLAEFWM+EPE+A
Sbjct: 192 DFSQDFFGRRAYLTVSGQLEAEIMATAFTNVYTFGPTFRAENSNTSRHLAEFWMVEPEMA 251
Query: 249 FADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTD 308
F DL+ DM A A+LQ+V RY+LD+C EDM FF I+ ++ +A + F LSY++
Sbjct: 252 FCDLRGDMELAEAFLQFVFRYVLDHCPEDMAFFQERIDHSVMATAEQMATQPFAHLSYSE 311
Query: 309 AIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG 368
AI++L K+ + FEF V WG DLQSEHERYL EE + PVIV DYP IKAFYMR NDDG
Sbjct: 312 AIQVLEKSGRAFEFPVAWGLDLQSEHERYLAEE-YCQRPVIVYDYPAAIKAFYMRLNDDG 370
Query: 369 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGF 428
+TVAAMD+L P+IGE+IGGSQREER + L+ R+ L+ YWWYLDLR YGSVPHAGF
Sbjct: 371 KTVAAMDILAPKIGEIIGGSQREERFDVLQERIVTQGLDPAPYWWYLDLRRYGSVPHAGF 430
Query: 429 GLGFERLVQFATGVENIRDAIPFPRTPGSVEF 460
GLGFERLVQF TG++NIRD IPFPRTPG+ EF
Sbjct: 431 GLGFERLVQFMTGMDNIRDVIPFPRTPGNAEF 462
|
Thermosynechococcus elongatus (strain BP-1) (taxid: 197221) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|A0PY64|SYN_CLONN Asparagine--tRNA ligase OS=Clostridium novyi (strain NT) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 538 bits (1386), Expect = e-152, Method: Compositional matrix adjust.
Identities = 254/449 (56%), Positives = 329/449 (73%), Gaps = 20/449 (4%)
Query: 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88
G + ++GW+RTLRA + FIEVNDGS N+Q V ++ E + ++ I++ SI +
Sbjct: 18 GKEVKISGWIRTLRASNKFGFIEVNDGSFFKNIQVVFGAELENFKEISKYAISS--SISV 75
Query: 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVA 148
+G VV ++G+KQ E+ K+VL GKSD YP+QKKR + E+LR+ AHLRPR+N F AV
Sbjct: 76 EGEVVITEGAKQPFEIHAKKVVLEGKSDADYPLQKKRHTFEYLRSIAHLRPRSNAFSAVF 135
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLD--------------- 193
RVR+ AYA HKFFQ+ GF+++ +PIIT SDCEGAGE F VTTLD
Sbjct: 136 RVRSLAAYAIHKFFQDQGFVYVHTPIITGSDCEGAGEMFRVTTLDMENPPKDEKGNVDYK 195
Query: 194 --FFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 251
FF K A LTVSGQL AE YA A NVYTFGPTFRAENSNT+RH +EFWMIEPE+AFA+
Sbjct: 196 EDFFGKQANLTVSGQLEAEIYALAFRNVYTFGPTFRAENSNTARHASEFWMIEPEMAFAE 255
Query: 252 LKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIE 311
LKD M A ++Y++ Y+ +N E+M+FFN +I+KG+++RL V DF ++SYT+A+E
Sbjct: 256 LKDYMDVAEQMVKYIINYVRENAPEEMEFFNKFIDKGLLERLDNVVNSDFARISYTEAVE 315
Query: 312 LLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTV 371
+L K+ +FE+ V+WG DLQ+EHERYLTE+ + PV V+DYPK+IKAFYMR NDD +TV
Sbjct: 316 ILQKSGAEFEYPVEWGIDLQTEHERYLTEQIYKK-PVFVTDYPKDIKAFYMRMNDDNKTV 374
Query: 372 AAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLG 431
AA D+LVP IGE+IGGSQREERL+ LE R+ EL L ++ YWWYL+LR YG HAG+GLG
Sbjct: 375 AAADLLVPGIGEIIGGSQREERLDILEARMAELGLEKEDYWWYLELRKYGETKHAGYGLG 434
Query: 432 FERLVQFATGVENIRDAIPFPRTPGSVEF 460
FER++ + TG+ NIRD IPFPRTPG EF
Sbjct: 435 FERMIMYLTGMGNIRDVIPFPRTPGVSEF 463
|
Clostridium novyi (strain NT) (taxid: 386415) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|P58692|SYN_NOSS1 Asparagine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 535 bits (1378), Expect = e-151, Method: Compositional matrix adjust.
Identities = 267/460 (58%), Positives = 324/460 (70%), Gaps = 27/460 (5%)
Query: 19 GGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSG 78
G P+E L VV GWVRT R FIEVNDGS L N+Q V+ D Y +
Sbjct: 13 GQPDESL-------VVQGWVRTKRELKGFAFIEVNDGSSLGNLQVVINQDLPDYAVIVKQ 65
Query: 79 LITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHL 137
L TGAS+ + G +V SQG Q++ELK + + G++DP +YP+QKKR S EFLRT HL
Sbjct: 66 L-NTGASVEVNGVLVASQGKGQRIELKAEAVKVYGEADPETYPLQKKRHSFEFLRTIGHL 124
Query: 138 RPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLD---- 193
R RTN+FGAV RVRNA + A H+FFQE GF+W+ +PIITASDCEGAGE F VT+LD
Sbjct: 125 RSRTNSFGAVFRVRNACSAAIHQFFQERGFLWVHTPIITASDCEGAGELFSVTSLDLKQI 184
Query: 194 -------------FFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEF 240
FF KP +LTVSGQL AE A A SNVYTFGPTFRAENSNTSRHLAEF
Sbjct: 185 PRTENQGIDYSQDFFAKPTYLTVSGQLEAEVMAMAFSNVYTFGPTFRAENSNTSRHLAEF 244
Query: 241 WMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERD 300
WM+EPE+AF DL+ DM A A+L+++ ++L+ C EDM+FFN I+ ++ +
Sbjct: 245 WMVEPEMAFCDLEGDMDLAEAFLKHIFNHVLEKCPEDMEFFNQRIDNTVLATAENIINNQ 304
Query: 301 FVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAF 360
F +L+YTDAI+LL KA KFE+ V WG DLQSEHERYL E+ F PVIV+DYP +IKAF
Sbjct: 305 FERLTYTDAIKLLEKADVKFEYPVSWGLDLQSEHERYLAEQLFKK-PVIVTDYPAQIKAF 363
Query: 361 YMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHY 420
YMR +DD +TV AMD+L P+IGE+IGGSQREERL+ LE R+ + + WWYLDLR Y
Sbjct: 364 YMRLSDDEKTVRAMDVLAPKIGEIIGGSQREERLDVLERRVLAQGMQPEDLWWYLDLRRY 423
Query: 421 GSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 460
G+VPHAGFGLGFERLVQF TG+ NIRD IPFPRTP + EF
Sbjct: 424 GTVPHAGFGLGFERLVQFITGMGNIRDVIPFPRTPQNAEF 463
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q899M9|SYN_CLOTE Asparagine--tRNA ligase OS=Clostridium tetani (strain Massachusetts / E88) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 533 bits (1374), Expect = e-151, Method: Compositional matrix adjust.
Identities = 253/468 (54%), Positives = 339/468 (72%), Gaps = 23/468 (4%)
Query: 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA 69
KK+ I + P + +++ IVVAGW+RT R + FIE+NDGS N+Q ++ ++
Sbjct: 2 KKISIKQLYREPEKFINK---DIVVAGWIRTERTSKNFGFIELNDGSFFKNLQIIIDTNL 58
Query: 70 EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE 129
+ +D+V + +SI ++G +V + +KQ E++ +K+ + G S YP+QKKR S E
Sbjct: 59 DNFDKVSK--LPISSSIVVEGKLVATPSAKQPFEVQASKVTVEGTSLQDYPLQKKRHSFE 116
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
FLR+ AHLRPR+NTF AV R+R+ AYA HKFFQE F+++ +PIITASDCEGAGE F V
Sbjct: 117 FLRSIAHLRPRSNTFSAVFRIRSLAAYAVHKFFQEKNFVYVHTPIITASDCEGAGEMFRV 176
Query: 190 TTLD-----------------FFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSN 232
TTLD FF+K A LTVSGQL+AE+YA A NVYTFGPTFRAENSN
Sbjct: 177 TTLDLNNIPKNDEGKIDFSQDFFDKDAKLTVSGQLSAESYALAFGNVYTFGPTFRAENSN 236
Query: 233 TSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDR 292
T+RH +EFWMIEPE+AFADL D M A ++Y++ Y+L+N E+M+FFN++I+K + R
Sbjct: 237 TARHASEFWMIEPEMAFADLTDYMDVAEEMVKYIINYVLENAPEEMNFFNSFIDKDLFKR 296
Query: 293 LSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSD 352
L V +F +++YT+A++LL K+ +KF++ V+WG DLQ+EHERY+TE+ FG PV V+D
Sbjct: 297 LDNVVNSEFKRITYTEAVDLLQKSGEKFQYPVEWGIDLQTEHERYITEKIFGK-PVFVTD 355
Query: 353 YPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYW 412
YPK+IKAFYMR N+D +TVAA D+LVP +GE+IGGSQREERL+ LE R+ E LN YW
Sbjct: 356 YPKDIKAFYMRLNEDNKTVAAADLLVPGVGEIIGGSQREERLDVLEERMKEFDLNEKDYW 415
Query: 413 WYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 460
WYL+LR YGS H+GFGLGFER++ + TG+ NIRD IPFPRTPGS EF
Sbjct: 416 WYLELRKYGSAKHSGFGLGFERILMYMTGISNIRDVIPFPRTPGSAEF 463
|
Clostridium tetani (strain Massachusetts / E88) (taxid: 212717) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|B2UXS0|SYN_CLOBA Asparagine--tRNA ligase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 533 bits (1372), Expect = e-150, Method: Compositional matrix adjust.
Identities = 248/446 (55%), Positives = 326/446 (73%), Gaps = 20/446 (4%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
++++GW+RTLRA ++ FIE+NDGS N+Q V + ++ + +SI + G
Sbjct: 22 VMISGWIRTLRASNAFGFIEINDGSFFKNIQVVFDDKLGNFKEISK--LPISSSISVVGT 79
Query: 92 VVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVR 151
+V + +KQ E++ +IV+ G S+ YP+QKKR + E+LR+ AHLRPR+N F A RVR
Sbjct: 80 LVATPDAKQPFEIQAKEIVIEGMSNSDYPLQKKRHTFEYLRSIAHLRPRSNAFSATFRVR 139
Query: 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLD-----------------F 194
+ A+A HKFFQE GF++ +PIIT SDCEGAGE F VTTLD F
Sbjct: 140 SVAAFAIHKFFQEQGFVYTHTPIITGSDCEGAGEMFRVTTLDPKAPELTKEGNIDYTKDF 199
Query: 195 FEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKD 254
F K LTVSGQLNAE +A A N+YTFGPTFRAENSNT+RH AEFWMIEPE+AFADL+D
Sbjct: 200 FGKETNLTVSGQLNAECFALAFRNIYTFGPTFRAENSNTTRHAAEFWMIEPEIAFADLQD 259
Query: 255 DMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLI 314
DM A A L+YV++Y++D C E++ FFN++++KG+++RL+ V DF +++YT+A+E+L
Sbjct: 260 DMELAEAMLKYVIKYVMDECPEELQFFNSFVDKGLLERLNHVVSSDFAKVTYTEAVEILE 319
Query: 315 KAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAM 374
K K+F++ V WG DLQ+EHERYLTEE F P+ V+DYPKEIKAFYMR N+D +TVAA
Sbjct: 320 KCDKEFDYDVSWGIDLQTEHERYLTEEHFKK-PLFVTDYPKEIKAFYMRMNEDNKTVAAT 378
Query: 375 DMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFER 434
D+LVP IGE+IGGSQREERL+ LE R+ EL L ++ YWWYL+LR YG HAGFGLGFER
Sbjct: 379 DLLVPGIGEIIGGSQREERLDVLEARMAELGLKKEDYWWYLELRKYGETKHAGFGLGFER 438
Query: 435 LVQFATGVENIRDAIPFPRTPGSVEF 460
L+ + TG+ NIRD IPFPRTPG+ EF
Sbjct: 439 LIMYITGMTNIRDVIPFPRTPGTSEF 464
|
Clostridium botulinum (strain Alaska E43 / Type E3) (taxid: 508767) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 460 | ||||||
| 224093120 | 578 | predicted protein [Populus trichocarpa] | 1.0 | 0.795 | 0.843 | 0.0 | |
| 224133182 | 574 | predicted protein [Populus trichocarpa] | 1.0 | 0.801 | 0.829 | 0.0 | |
| 449458950 | 562 | PREDICTED: asparagine--tRNA ligase, chlo | 0.997 | 0.816 | 0.792 | 0.0 | |
| 359495974 | 584 | PREDICTED: asparaginyl-tRNA synthetase, | 0.997 | 0.785 | 0.823 | 0.0 | |
| 15236037 | 567 | asparaginyl-tRNA synthetase [Arabidopsis | 1.0 | 0.811 | 0.792 | 0.0 | |
| 2664210 | 566 | asparaginyl-tRNA synthetase [Arabidopsis | 1.0 | 0.812 | 0.792 | 0.0 | |
| 297804454 | 567 | hypothetical protein ARALYDRAFT_914989 [ | 1.0 | 0.811 | 0.792 | 0.0 | |
| 357476849 | 565 | Asparaginyl-tRNA synthetase [Medicago tr | 0.989 | 0.805 | 0.763 | 0.0 | |
| 356565357 | 550 | PREDICTED: asparaginyl-tRNA synthetase, | 0.991 | 0.829 | 0.779 | 0.0 | |
| 356514300 | 551 | PREDICTED: asparaginyl-tRNA synthetase, | 0.991 | 0.827 | 0.779 | 0.0 |
| >gi|224093120|ref|XP_002309798.1| predicted protein [Populus trichocarpa] gi|222852701|gb|EEE90248.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 860 bits (2222), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/487 (84%), Positives = 441/487 (90%), Gaps = 27/487 (5%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
+G++VGEFRKKLKI D+KGGP+EGLDRVG IVV GWVRTLR QSSVTFIEVNDGSCLSN
Sbjct: 92 VGNRVGEFRKKLKIADIKGGPDEGLDRVGKTIVVMGWVRTLRVQSSVTFIEVNDGSCLSN 151
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
MQCVM +AEGYDQV+SGLITTGASI +QG VV SQGSKQKVELKVNKIVLVGKSDPSYP
Sbjct: 152 MQCVMGLEAEGYDQVESGLITTGASILVQGTVVESQGSKQKVELKVNKIVLVGKSDPSYP 211
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDC
Sbjct: 212 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDC 271
Query: 181 EGAGEQFCVTTL---------------------------DFFEKPAFLTVSGQLNAETYA 213
EGAGEQFCVTTL DFF KPAFLTVSGQLNAETYA
Sbjct: 272 EGAGEQFCVTTLIPGSQEVANSPVDRIPKTKDGLIDWSQDFFGKPAFLTVSGQLNAETYA 331
Query: 214 TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 273
TALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV++IL+N
Sbjct: 332 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLTDDMACATAYLQYVVKHILEN 391
Query: 274 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 333
CKEDM+FFNTWIEKGIIDRL+ VAE+DFVQL+YTDA+ELL+KAKKKFEF V+WGCDLQSE
Sbjct: 392 CKEDMEFFNTWIEKGIIDRLTDVAEKDFVQLTYTDAVELLLKAKKKFEFPVEWGCDLQSE 451
Query: 334 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREER 393
HERY+TEEAFGGCPVI+ DYPK+IKAFYMRQNDDG+TVAAMDMLVPR+GELIGGSQREER
Sbjct: 452 HERYITEEAFGGCPVIIRDYPKDIKAFYMRQNDDGKTVAAMDMLVPRVGELIGGSQREER 511
Query: 394 LEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 453
LEYLE RLDELKLN++S+WWYLDLR YGSVPHAGFGLGFERLVQFATG+ENIRDAIPFPR
Sbjct: 512 LEYLEDRLDELKLNKESFWWYLDLRRYGSVPHAGFGLGFERLVQFATGLENIRDAIPFPR 571
Query: 454 TPGSVEF 460
PGS EF
Sbjct: 572 VPGSAEF 578
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224133182|ref|XP_002327980.1| predicted protein [Populus trichocarpa] gi|222837389|gb|EEE75768.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 852 bits (2201), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/487 (82%), Positives = 438/487 (89%), Gaps = 27/487 (5%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
+G++VGEFR+KLKI D+KGGP+EGLDRVG I+V GWVRTLR QSSVTFIEVNDGSCLSN
Sbjct: 88 IGNRVGEFRRKLKIADIKGGPDEGLDRVGKTIIVMGWVRTLRVQSSVTFIEVNDGSCLSN 147
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+QCVM +AEGYDQV+SGL+TTGASIW+QG VV SQGSKQKVELKV KIV VGKSDPSYP
Sbjct: 148 LQCVMDLEAEGYDQVESGLVTTGASIWMQGTVVKSQGSKQKVELKVIKIVAVGKSDPSYP 207
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDC
Sbjct: 208 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDC 267
Query: 181 EGAGEQFCVTTL---------------------------DFFEKPAFLTVSGQLNAETYA 213
EGAGEQFCVTTL DFF KPAFLTVSGQLNAETYA
Sbjct: 268 EGAGEQFCVTTLIPGSQEAANSPVDGIPKTKDGLIDWSQDFFGKPAFLTVSGQLNAETYA 327
Query: 214 TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 273
TALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVVR+IL+N
Sbjct: 328 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVRHILEN 387
Query: 274 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 333
CKEDM+FFNTWIEKGIIDRLS V E+DFVQL+YTDAIELL+KAKKKFEF ++WGCDLQSE
Sbjct: 388 CKEDMEFFNTWIEKGIIDRLSDVVEKDFVQLTYTDAIELLLKAKKKFEFPLEWGCDLQSE 447
Query: 334 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREER 393
HERY+TEE FGGCPVI+ DYPK+IKAFYMRQNDDG+TVAAMDMLVPR+GELIGGSQREER
Sbjct: 448 HERYITEEVFGGCPVIIRDYPKDIKAFYMRQNDDGKTVAAMDMLVPRVGELIGGSQREER 507
Query: 394 LEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 453
LEY+E RLDELKLN++S+WWYLDLR YGSVPHAGFGLGFERLVQFATG++NIRDAIPFPR
Sbjct: 508 LEYIEDRLDELKLNKESFWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFPR 567
Query: 454 TPGSVEF 460
PGS EF
Sbjct: 568 VPGSAEF 574
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458950|ref|XP_004147209.1| PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial-like [Cucumis sativus] gi|449504980|ref|XP_004162346.1| PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 818 bits (2114), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/486 (79%), Positives = 430/486 (88%), Gaps = 27/486 (5%)
Query: 2 GSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNM 61
G KVGEFRKKL+I ++KGG +EG+DR+G VV GWVRTLR QSSVTF+EVNDGSC+SNM
Sbjct: 77 GEKVGEFRKKLRISEIKGGRDEGVDRLGQTFVVMGWVRTLRVQSSVTFMEVNDGSCISNM 136
Query: 62 QCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121
QCV+ S EGYDQV+SGLITTGAS+W++G VV SQGSKQKVELK+ K+++VGKSDPS+P+
Sbjct: 137 QCVIDSTTEGYDQVESGLITTGASVWVEGVVVASQGSKQKVELKLQKVIVVGKSDPSFPV 196
Query: 122 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE 181
QKK+VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDCE
Sbjct: 197 QKKKVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCE 256
Query: 182 GAGEQFCVTTL---------------------------DFFEKPAFLTVSGQLNAETYAT 214
GAGEQFCVTTL DFF KPAFLTVSGQLNAETYAT
Sbjct: 257 GAGEQFCVTTLIPSSGEPARSDVGSIPKTKEGFIDWSQDFFGKPAFLTVSGQLNAETYAT 316
Query: 215 ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC 274
ALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDM+CATAYLQYVVR+IL+NC
Sbjct: 317 ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMSCATAYLQYVVRHILENC 376
Query: 275 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 334
KED+DFFNTWIEKGIIDRL+ + E DFVQL YTDAIELL++A KKFE+ VKWG DLQSEH
Sbjct: 377 KEDLDFFNTWIEKGIIDRLTNLVENDFVQLPYTDAIELLLRANKKFEYPVKWGSDLQSEH 436
Query: 335 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERL 394
ERY+TE AFGGCPVI+ DYP++IKAFYMRQNDDG+TVAAMDMLVP+IGELIGGSQREERL
Sbjct: 437 ERYITEVAFGGCPVIIRDYPRDIKAFYMRQNDDGKTVAAMDMLVPKIGELIGGSQREERL 496
Query: 395 EYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 454
+YLE RLD+LKLN++SYWWYLDLR YGSVPHAGFGLGFERLVQF TG++NIRDAIPFPR+
Sbjct: 497 DYLEARLDDLKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFVTGIDNIRDAIPFPRS 556
Query: 455 PGSVEF 460
PGS EF
Sbjct: 557 PGSAEF 562
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495974|ref|XP_003635124.1| PREDICTED: asparaginyl-tRNA synthetase, chloroplastic/mitochondrial-like isoform 2 [Vitis vinifera] gi|297744376|emb|CBI37350.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 816 bits (2107), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/486 (82%), Positives = 434/486 (89%), Gaps = 27/486 (5%)
Query: 2 GSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNM 61
G KVGEFRK+L++VD+KGGP+EGLDR+G + V GWVRTLR QSSV FIEVNDGSCLSNM
Sbjct: 99 GEKVGEFRKRLRVVDIKGGPDEGLDRLGQTLAVKGWVRTLRVQSSVIFIEVNDGSCLSNM 158
Query: 62 QCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121
QCVM SDA+GYDQV+SG ITTGAS+ IQG +V SQGSKQKVELKV KIV VGKSDPS+PI
Sbjct: 159 QCVMNSDADGYDQVESGSITTGASVSIQGTLVASQGSKQKVELKVLKIVTVGKSDPSFPI 218
Query: 122 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE 181
QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF+WISSPIITASDCE
Sbjct: 219 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWISSPIITASDCE 278
Query: 182 GAGEQFCVTTL---------------------------DFFEKPAFLTVSGQLNAETYAT 214
GAGEQFCVTTL DFF KPAFLTVSGQLNAETYAT
Sbjct: 279 GAGEQFCVTTLIPSSREATDSTVDAIPKAKDGLIDWSQDFFGKPAFLTVSGQLNAETYAT 338
Query: 215 ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC 274
ALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV YIL+NC
Sbjct: 339 ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVTYILENC 398
Query: 275 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 334
KEDM+FFNTWIEKGII+RLS VAE++FVQL+YTDA+ELL++A KKFEF VKWGCDLQSEH
Sbjct: 399 KEDMEFFNTWIEKGIINRLSDVAEKNFVQLTYTDAVELLLRANKKFEFPVKWGCDLQSEH 458
Query: 335 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERL 394
ERY+TE AFGGCPVI+ DYPK+IKAFYMR+NDDG+TVAAMDMLVPR+GELIGGSQREERL
Sbjct: 459 ERYITEVAFGGCPVIIRDYPKDIKAFYMRRNDDGKTVAAMDMLVPRVGELIGGSQREERL 518
Query: 395 EYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 454
EYLE RLD+LKL++DSYWWYLDLR YGSVPHAGFGLGFERLVQFATG++NIRDAIPFPRT
Sbjct: 519 EYLEERLDDLKLSKDSYWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFPRT 578
Query: 455 PGSVEF 460
PGS EF
Sbjct: 579 PGSAEF 584
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15236037|ref|NP_193462.1| asparaginyl-tRNA synthetase [Arabidopsis thaliana] gi|55584148|sp|O48593.3|SYNO_ARATH RecName: Full=Asparagine--tRNA ligase, chloroplastic/mitochondrial; AltName: Full=Asparaginyl-tRNA synthetase; Short=AsnRS; Flags: Precursor gi|19310458|gb|AAL84964.1| AT4g17300/dl4685w [Arabidopsis thaliana] gi|332658474|gb|AEE83874.1| asparaginyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 812 bits (2097), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/487 (79%), Positives = 425/487 (87%), Gaps = 27/487 (5%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
GSKVGEFRKKL+I +VKGG +EGL RVG + + GWVRTLR+QSSVTFIE+NDGSCLSN
Sbjct: 81 FGSKVGEFRKKLRIAEVKGGADEGLSRVGQSLNIMGWVRTLRSQSSVTFIEINDGSCLSN 140
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+QCVMTSDAEGYDQV+SG I TGAS+ +QG +V SQG+KQKVELKV KI++VG+ D SYP
Sbjct: 141 LQCVMTSDAEGYDQVESGSILTGASVSVQGTIVASQGTKQKVELKVEKIIVVGECDSSYP 200
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRN LAYATHKFFQE+GF+W++SPIITASDC
Sbjct: 201 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFVWVASPIITASDC 260
Query: 181 EGAGEQFCVTTL---------------------------DFFEKPAFLTVSGQLNAETYA 213
EGAGEQFCVTTL DFF KPAFLTVSGQLN ETYA
Sbjct: 261 EGAGEQFCVTTLIPSSHENTDTSIDAIPKTKGGLIDWSQDFFGKPAFLTVSGQLNGETYA 320
Query: 214 TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 273
TALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV+Y+LDN
Sbjct: 321 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMACATAYLQYVVKYVLDN 380
Query: 274 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 333
CKEDM+FF+TWIEKGII RLS VAE++F+QL YTDAIE+L+KA KKF+F VKWG DLQSE
Sbjct: 381 CKEDMEFFDTWIEKGIIRRLSDVAEKEFLQLGYTDAIEILLKANKKFDFPVKWGLDLQSE 440
Query: 334 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREER 393
HERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPRIGELIGGSQREER
Sbjct: 441 HERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRIGELIGGSQREER 500
Query: 394 LEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 453
LE LE RLDELKLN++SYWWYLDLR YGSVPHAGFGLGFERLVQF TG++NIRD IPFPR
Sbjct: 501 LEVLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFVTGIDNIRDVIPFPR 560
Query: 454 TPGSVEF 460
TP S EF
Sbjct: 561 TPASAEF 567
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2664210|emb|CAA10904.1| asparaginyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 811 bits (2096), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/487 (79%), Positives = 425/487 (87%), Gaps = 27/487 (5%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
GSKVGEFRKKL+I +VKGG +EGL RVG + + GWVRTLR+QSSVTFIE+NDGSCLSN
Sbjct: 80 FGSKVGEFRKKLRIAEVKGGADEGLSRVGQSLNIMGWVRTLRSQSSVTFIEINDGSCLSN 139
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+QCVMTSDAEGYDQV+SG I TGAS+ +QG +V SQG+KQKVELKV KI++VG+ D SYP
Sbjct: 140 LQCVMTSDAEGYDQVESGSILTGASVSVQGTIVASQGTKQKVELKVEKIIVVGECDSSYP 199
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRN LAYATHKFFQE+GF+W++SPIITASDC
Sbjct: 200 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFVWVASPIITASDC 259
Query: 181 EGAGEQFCVTTL---------------------------DFFEKPAFLTVSGQLNAETYA 213
EGAGEQFCVTTL DFF KPAFLTVSGQLN ETYA
Sbjct: 260 EGAGEQFCVTTLIPSSHEYTDTSIDAIPKTKGGLIDWSQDFFGKPAFLTVSGQLNGETYA 319
Query: 214 TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 273
TALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV+Y+LDN
Sbjct: 320 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMACATAYLQYVVKYVLDN 379
Query: 274 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 333
CKEDM+FF+TWIEKGII RLS VAE++F+QL YTDAIE+L+KA KKF+F VKWG DLQSE
Sbjct: 380 CKEDMEFFDTWIEKGIIRRLSDVAEKEFLQLGYTDAIEILLKANKKFDFPVKWGLDLQSE 439
Query: 334 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREER 393
HERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPRIGELIGGSQREER
Sbjct: 440 HERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRIGELIGGSQREER 499
Query: 394 LEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 453
LE LE RLDELKLN++SYWWYLDLR YGSVPHAGFGLGFERLVQF TG++NIRD IPFPR
Sbjct: 500 LEVLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFVTGIDNIRDVIPFPR 559
Query: 454 TPGSVEF 460
TP S EF
Sbjct: 560 TPASAEF 566
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297804454|ref|XP_002870111.1| hypothetical protein ARALYDRAFT_914989 [Arabidopsis lyrata subsp. lyrata] gi|297315947|gb|EFH46370.1| hypothetical protein ARALYDRAFT_914989 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/487 (79%), Positives = 424/487 (87%), Gaps = 27/487 (5%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
GSKVGEFRKKLKI +VKGG +EGL RVG + + GWVRTLR+QSSVTFIE+NDGSCLSN
Sbjct: 81 FGSKVGEFRKKLKIAEVKGGADEGLGRVGQSLNIMGWVRTLRSQSSVTFIEINDGSCLSN 140
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+QCVM SDAEGYDQV+SG I TGAS+ +QG +V SQG+KQKVELKV KI++VGK D SYP
Sbjct: 141 LQCVMNSDAEGYDQVESGSILTGASVSVQGTIVASQGTKQKVELKVEKIIVVGKCDSSYP 200
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRN LAYATHKFFQE+GF+W++SPIITASDC
Sbjct: 201 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFVWVASPIITASDC 260
Query: 181 EGAGEQFCVTTL---------------------------DFFEKPAFLTVSGQLNAETYA 213
EGAGEQFCVTTL DFF KPAFLTVSGQLN ETYA
Sbjct: 261 EGAGEQFCVTTLIPSSHENTDTSIDAIPKTKGGLIDWSQDFFGKPAFLTVSGQLNGETYA 320
Query: 214 TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 273
TALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV+Y+LDN
Sbjct: 321 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMACATAYLQYVVKYVLDN 380
Query: 274 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 333
CKEDM+FF+TWIEKGII RLS VAE++F+QL YTDAIE+L+KA +KF+F VKWG DLQSE
Sbjct: 381 CKEDMEFFDTWIEKGIIRRLSDVAEKEFLQLGYTDAIEVLLKANRKFDFPVKWGLDLQSE 440
Query: 334 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREER 393
HERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPRIGELIGGSQREER
Sbjct: 441 HERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRIGELIGGSQREER 500
Query: 394 LEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 453
LE LE RLDELKLN++SYWWYLDLR YGSVPHAGFGLGFERLVQF TG++NIRD IPFPR
Sbjct: 501 LEVLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFVTGIDNIRDVIPFPR 560
Query: 454 TPGSVEF 460
TP S EF
Sbjct: 561 TPASAEF 567
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357476849|ref|XP_003608710.1| Asparaginyl-tRNA synthetase [Medicago truncatula] gi|355509765|gb|AES90907.1| Asparaginyl-tRNA synthetase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 799 bits (2063), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/503 (76%), Positives = 428/503 (85%), Gaps = 48/503 (9%)
Query: 3 SKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
+KV +FRKKLK+ DVK G D +G +V+ GWVRTLR QSSVTF+E+NDGSCLSNMQ
Sbjct: 66 NKVPQFRKKLKVSDVKDG---QFDSLGNTLVLQGWVRTLRLQSSVTFLEINDGSCLSNMQ 122
Query: 63 CVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122
CV+ ++ EGYDQV+SGLITTGAS+W+QG VV SQG+KQKVELK+NKIVLVGKSDPS+PIQ
Sbjct: 123 CVLDTEVEGYDQVESGLITTGASVWVQGIVVKSQGTKQKVELKLNKIVLVGKSDPSFPIQ 182
Query: 123 KKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG 182
KKRVSREFLRTKAHLR RTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDCEG
Sbjct: 183 KKRVSREFLRTKAHLRARTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCEG 242
Query: 183 AGEQFCVTTL--------------------------DFFEKPAFLTVSGQLNAETYATAL 216
AGEQFCVTTL DFF KPAFLTVSGQLNAETYATAL
Sbjct: 243 AGEQFCVTTLIPNSHETADSPVDAIPKNDKLIDWSQDFFGKPAFLTVSGQLNAETYATAL 302
Query: 217 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE 276
S+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQ+V+R+ILDNCKE
Sbjct: 303 SDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQFVIRHILDNCKE 362
Query: 277 DMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHER 336
DM+FFNTWI+KGIIDRLS VAE+D +Q++YT+A++LL +A KKFEF VKWGCDLQSEHER
Sbjct: 363 DMEFFNTWIDKGIIDRLSDVAEKDVLQITYTEAVDLLSRANKKFEFPVKWGCDLQSEHER 422
Query: 337 YLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPR---------------- 380
Y+TEEAFGGCPVI+ DYPK+IKAFYMRQNDDG+TVAAMDMLVP+
Sbjct: 423 YITEEAFGGCPVIIRDYPKDIKAFYMRQNDDGKTVAAMDMLVPKLGALIVCQCWAGEPRD 482
Query: 381 ---IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQ 437
IGELIGGSQREERLE+LE RLD+LKLN+D+YWWYLDLR YGSVPHAGFGLGFERLVQ
Sbjct: 483 YITIGELIGGSQREERLEHLEARLDDLKLNKDAYWWYLDLRRYGSVPHAGFGLGFERLVQ 542
Query: 438 FATGVENIRDAIPFPRTPGSVEF 460
FATG++NIRD IPFPRTPGS EF
Sbjct: 543 FATGMDNIRDVIPFPRTPGSAEF 565
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356565357|ref|XP_003550908.1| PREDICTED: asparaginyl-tRNA synthetase, chloroplastic/mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 797 bits (2058), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/485 (77%), Positives = 422/485 (87%), Gaps = 29/485 (5%)
Query: 3 SKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
++V +FR+KL++ ++K G +G D +G +VV GWVRTLR QSSVTF+E+NDGSCLSNMQ
Sbjct: 68 NRVQQFRRKLRVSEIKEG--DGADVLGRNLVVQGWVRTLRIQSSVTFLEINDGSCLSNMQ 125
Query: 63 CVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122
CV+ S+AEGYDQV+SGL+TTGAS+W+QG VV SQGSKQKVELKVNKIVL+GKSDPS+PIQ
Sbjct: 126 CVLNSEAEGYDQVESGLVTTGASVWVQGVVVKSQGSKQKVELKVNKIVLIGKSDPSFPIQ 185
Query: 123 KKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG 182
KKR SREFLRTKAHLR RTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDCEG
Sbjct: 186 KKRASREFLRTKAHLRARTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCEG 245
Query: 183 AGEQFCVTTL---------------------------DFFEKPAFLTVSGQLNAETYATA 215
AGEQFCVTTL DFF KPAFLTVSGQLN ETYATA
Sbjct: 246 AGEQFCVTTLIPSSHETNDSPVDAIPKTNDGLIDWSQDFFGKPAFLTVSGQLNGETYATA 305
Query: 216 LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK 275
LS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQ+V+R++LDNCK
Sbjct: 306 LSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQFVIRHVLDNCK 365
Query: 276 EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHE 335
EDM+FF+ WI KGIIDRLS VA++D VQ++YT+AI+LL A KKFEF VKWG DLQSEHE
Sbjct: 366 EDMEFFDAWINKGIIDRLSDVADKDVVQITYTEAIDLLSGANKKFEFPVKWGSDLQSEHE 425
Query: 336 RYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLE 395
RY+TEE F GCPVI+ DYPK+IKAFYMRQNDDGRTVAAMDMLVP IGELIGGSQREERLE
Sbjct: 426 RYITEEVFSGCPVIIRDYPKDIKAFYMRQNDDGRTVAAMDMLVPGIGELIGGSQREERLE 485
Query: 396 YLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 455
YLE RLD+LKLN+D+YWWYLDLR YGSVPHAGFGLGFERLVQFATG++NIRD IPFPRTP
Sbjct: 486 YLEARLDDLKLNKDAYWWYLDLRRYGSVPHAGFGLGFERLVQFATGMDNIRDVIPFPRTP 545
Query: 456 GSVEF 460
GS EF
Sbjct: 546 GSAEF 550
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356514300|ref|XP_003525844.1| PREDICTED: asparaginyl-tRNA synthetase, chloroplastic/mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/485 (77%), Positives = 422/485 (87%), Gaps = 29/485 (5%)
Query: 3 SKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
++V +FR+KL++ ++K G +G D G +VV GWVRTLR QS VTF+E+NDGSCLSNMQ
Sbjct: 69 NRVQQFRRKLRVSEIKEG--DGADVFGRNLVVQGWVRTLRIQSIVTFLEINDGSCLSNMQ 126
Query: 63 CVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122
CV+ S+AEGYDQV+SGL+TTGAS+W+QG VV SQGSKQKVELKVNKIVL+GKSDPS+PIQ
Sbjct: 127 CVLNSEAEGYDQVESGLVTTGASVWVQGVVVKSQGSKQKVELKVNKIVLIGKSDPSFPIQ 186
Query: 123 KKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG 182
KKR SREFLRTKAHLR RTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDCEG
Sbjct: 187 KKRASREFLRTKAHLRARTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCEG 246
Query: 183 AGEQFCVTTL---------------------------DFFEKPAFLTVSGQLNAETYATA 215
AGEQFCVTTL DFF KPAFLTVSGQLN ETYAT+
Sbjct: 247 AGEQFCVTTLIPSSHETTDSPVDAIPKTNDGLIDWSQDFFGKPAFLTVSGQLNGETYATS 306
Query: 216 LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK 275
LS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQ+V+R++LDNCK
Sbjct: 307 LSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQFVIRHVLDNCK 366
Query: 276 EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHE 335
EDM+FF+TWI KGIIDRLS VA++D VQ++YT+AI+LL A KKFEF VKWG DLQSEHE
Sbjct: 367 EDMEFFDTWINKGIIDRLSDVADKDVVQITYTEAIDLLSGANKKFEFPVKWGSDLQSEHE 426
Query: 336 RYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLE 395
RY+TEEAF GCPVI+ DYPK+IKAFYMRQNDDGRTVAAMDMLVP IGELIGGSQREERLE
Sbjct: 427 RYITEEAFSGCPVIIRDYPKDIKAFYMRQNDDGRTVAAMDMLVPGIGELIGGSQREERLE 486
Query: 396 YLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 455
YLE RLD+LKLN+D+YWWYLDLR YGSVPHAGFGLGFERLVQFATG++NIRD IPFPRTP
Sbjct: 487 YLEARLDDLKLNKDAYWWYLDLRRYGSVPHAGFGLGFERLVQFATGMDNIRDVIPFPRTP 546
Query: 456 GSVEF 460
GS EF
Sbjct: 547 GSAEF 551
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 460 | ||||||
| TAIR|locus:2130804 | 567 | NS1 [Arabidopsis thaliana (tax | 0.582 | 0.472 | 0.813 | 1e-204 | |
| TIGR_CMR|SO_2218 | 466 | SO_2218 "asparaginyl-tRNA synt | 0.580 | 0.572 | 0.604 | 1e-128 | |
| TIGR_CMR|GSU_1156 | 461 | GSU_1156 "asparaginyl-tRNA syn | 0.932 | 0.930 | 0.553 | 1.4e-128 | |
| TAIR|locus:2014005 | 571 | SYNC3 [Arabidopsis thaliana (t | 0.580 | 0.467 | 0.594 | 5.6e-126 | |
| UNIPROTKB|P0A8M0 | 466 | asnS "asparaginyl-tRNA synthet | 0.580 | 0.572 | 0.597 | 3.1e-125 | |
| TIGR_CMR|BA_4802 | 463 | BA_4802 "asparaginyl-tRNA synt | 0.580 | 0.576 | 0.578 | 2.7e-124 | |
| TIGR_CMR|CPS_2591 | 466 | CPS_2591 "asparaginyl-tRNA syn | 0.580 | 0.572 | 0.604 | 1.2e-123 | |
| TAIR|locus:2165001 | 572 | SYNC1 [Arabidopsis thaliana (t | 0.578 | 0.465 | 0.607 | 3.5e-122 | |
| UNIPROTKB|Q9KSF9 | 466 | asnS "Asparagine--tRNA ligase" | 0.580 | 0.572 | 0.600 | 1.5e-121 | |
| TIGR_CMR|VC_1297 | 466 | VC_1297 "asparaginyl-tRNA synt | 0.580 | 0.572 | 0.600 | 1.5e-121 |
| TAIR|locus:2130804 NS1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1177 (419.4 bits), Expect = 1.0e-204, Sum P(2) = 1.0e-204
Identities = 218/268 (81%), Positives = 237/268 (88%)
Query: 193 DFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL 252
DFF KPAFLTVSGQLN ETYATALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL
Sbjct: 300 DFFGKPAFLTVSGQLNGETYATALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL 359
Query: 253 KDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIEL 312
DDMACATAYLQYVV+Y+LDNCKEDM+FF+TWIEKGII RLS VAE++F+QL YTDAIE+
Sbjct: 360 DDDMACATAYLQYVVKYVLDNCKEDMEFFDTWIEKGIIRRLSDVAEKEFLQLGYTDAIEI 419
Query: 313 LIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVA 372
L+KA KKF+F VKWG DLQSEHERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVA
Sbjct: 420 LLKANKKFDFPVKWGLDLQSEHERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVA 479
Query: 373 AMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGF 432
AMDMLVPRIGELIGGSQ KLN++SYWWYLDLR YGSVPHAGFGLGF
Sbjct: 480 AMDMLVPRIGELIGGSQREERLEVLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGF 539
Query: 433 ERLVQFATGVENIRDAIPFPRTPGSVEF 460
ERLVQF TG++NIRD IPFPRTP S EF
Sbjct: 540 ERLVQFVTGIDNIRDVIPFPRTPASAEF 567
|
|
| TIGR_CMR|SO_2218 SO_2218 "asparaginyl-tRNA synthetase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 861 (308.1 bits), Expect = 1.0e-128, Sum P(2) = 1.0e-128
Identities = 162/268 (60%), Positives = 192/268 (71%)
Query: 193 DFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL 252
DFF K AFLTVSGQLN ETYA ALS +YTFGPTFRAENSNTSRHLAEFWM+EPE+AFA L
Sbjct: 200 DFFGKEAFLTVSGQLNGETYACALSKIYTFGPTFRAENSNTSRHLAEFWMVEPEVAFATL 259
Query: 253 KDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIEL 312
D A L+Y +L +D+ FF ++K +I+RL + DF Q+ YTDA+E+
Sbjct: 260 NDIAGLAEGMLKYAFNAVLTERMDDLQFFAQHVDKTVIERLQSFVSSDFAQVDYTDAVEI 319
Query: 313 LIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVA 372
L K+ ++FEF V WG DL SEHERYL EE F PV+V +YPK+IKAFYMR N+DG+TVA
Sbjct: 320 LQKSGREFEFPVSWGIDLSSEHERYLAEEHFKA-PVVVKNYPKDIKAFYMRLNEDGKTVA 378
Query: 373 AMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGF 432
AMD+L P IGE+IGGSQ LN++ YWWY DLR YG+VPHAGFGLGF
Sbjct: 379 AMDVLAPGIGEIIGGSQREERLDVLDMRLEEMDLNKEDYWWYRDLRRYGTVPHAGFGLGF 438
Query: 433 ERLVQFATGVENIRDAIPFPRTPGSVEF 460
ERLV + TGV NIRD IPFPR P + F
Sbjct: 439 ERLVSYVTGVSNIRDVIPFPRAPRTANF 466
|
|
| TIGR_CMR|GSU_1156 GSU_1156 "asparaginyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1262 (449.3 bits), Expect = 1.4e-128, P = 1.4e-128
Identities = 248/448 (55%), Positives = 311/448 (69%)
Query: 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88
G ++V GWVRT R V F+ VNDGSCL+++Q V Y +++ I TGA++ +
Sbjct: 17 GTEVIVKGWVRTSRVGKGVAFLAVNDGSCLASLQVVAEPGLANYHELRG--IGTGAAVAV 74
Query: 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVA 148
+G V S + Q VEL K+V+VG +D YP+QKKR + E+LRT AHLRPR+NTFGAV
Sbjct: 75 RGIVAESPAAGQAVELHATKVVVVGGADEQYPLQKKRHTFEYLRTIAHLRPRSNTFGAVF 134
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLD--------------- 193
RVR++LA A H+FF E GF+++ +PIIT SDCEGAGE F VTTLD
Sbjct: 135 RVRSSLAQAVHRFFAERGFLYVHTPIITTSDCEGAGELFRVTTLDPSAPPMADGAVDFSQ 194
Query: 194 -FFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL 252
FF A LTVSGQL E +A A S++YTFGPTFRAENSNT RH AEFWMIEPE+AFADL
Sbjct: 195 DFFAAQAGLTVSGQLEGELFAQAFSDIYTFGPTFRAENSNTPRHAAEFWMIEPEMAFADL 254
Query: 253 KDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIEL 312
+DD A A + +Y+ R++LDNC EDM FFN +++G++ R+ VA F + Y AIE
Sbjct: 255 RDDAALAEDFFRYLCRHVLDNCAEDMAFFNEHVDRGLLARVEQVAGSSFAMMEYGVAIEH 314
Query: 313 LIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVA 372
L +A FE+ V+WG DLQ+EHERYLTE+ GG PV V +YP+EIKAFYMR+NDDGRTVA
Sbjct: 315 LKRAAVPFEYPVEWGLDLQTEHERYLTEQVVGG-PVFVVNYPQEIKAFYMRRNDDGRTVA 373
Query: 373 AMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGF 432
AMD+LVP++GE+IGGSQ + +S WWYLD R +GS PHAGFGLGF
Sbjct: 374 AMDLLVPKVGEIIGGSQREERYDLLESRMREGGIAPESLWWYLDSRRWGSTPHAGFGLGF 433
Query: 433 ERLVQFATGVENIRDAIPFPRTPGSVEF 460
ERL+ + TG+ENIRD IPFPRTP EF
Sbjct: 434 ERLIMYLTGMENIRDVIPFPRTPRHAEF 461
|
|
| TAIR|locus:2014005 SYNC3 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 843 (301.8 bits), Expect = 5.6e-126, Sum P(2) = 5.6e-126
Identities = 161/271 (59%), Positives = 201/271 (74%)
Query: 193 DFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL 252
DFF + AFLTVSGQL ETYA ALS+VYTFGPTFRAENS+TSRHLAEFWM+EPE+AFAD+
Sbjct: 300 DFFGRQAFLTVSGQLQVETYACALSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADI 359
Query: 253 KDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIEL 312
DDM CA AY++Y+ ++++D C +DM+ + +++G RL+ VA+ F +++YT+AIE
Sbjct: 360 HDDMNCAEAYVKYMCKWLMDKCGDDMELMDKNVDEGCTKRLNMVAKASFKRVTYTEAIER 419
Query: 313 LIKA----KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG 368
L KA K F+ V+WG DL SEHERYLTE F P+IV +YPK IKAFYMR NDD
Sbjct: 420 LEKAVAQGKVVFDNKVEWGIDLASEHERYLTEVEFDQKPIIVYNYPKGIKAFYMRLNDDE 479
Query: 369 RTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGF 428
+TVAAMD+LVP++GELIGGSQ L + Y WYLDLR YG+V H GF
Sbjct: 480 KTVAAMDVLVPKVGELIGGSQREERYDVIKQRIEEMGLPMEPYEWYLDLRRYGTVKHCGF 539
Query: 429 GLGFERLVQFATGVENIRDAIPFPRTPGSVE 459
GLGFER++QFATG++NIRD IPFPR PG +
Sbjct: 540 GLGFERMIQFATGIDNIRDVIPFPRYPGKAD 570
|
|
| UNIPROTKB|P0A8M0 asnS "asparaginyl-tRNA synthetase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 850 (304.3 bits), Expect = 3.1e-125, Sum P(2) = 3.1e-125
Identities = 160/268 (59%), Positives = 193/268 (72%)
Query: 193 DFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL 252
DFF K +FLTVSGQLN ETYA ALS +YTFGPTFRAENSNTSRHLAEFWM+EPE+AFA+L
Sbjct: 200 DFFGKESFLTVSGQLNGETYACALSKIYTFGPTFRAENSNTSRHLAEFWMLEPEVAFANL 259
Query: 253 KDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIEL 312
D A A L+YV + +L+ +DM FF ++K + RL E DF Q+ YTDA+ +
Sbjct: 260 NDIAGLAEAMLKYVFKAVLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTI 319
Query: 313 LIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVA 372
L +KFE V WG DL SEHERYL EE F PV+V +YPK+IKAFYMR N+DG+TVA
Sbjct: 320 LENCGRKFENPVYWGVDLSSEHERYLAEEHFKA-PVVVKNYPKDIKAFYMRLNEDGKTVA 378
Query: 373 AMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGF 432
AMD+L P IGE+IGGSQ LN++ YWWY DLR YG+VPH+GFGLGF
Sbjct: 379 AMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGF 438
Query: 433 ERLVQFATGVENIRDAIPFPRTPGSVEF 460
ERL+ + TGV+N+RD IPFPRTP + F
Sbjct: 439 ERLIAYVTGVQNVRDVIPFPRTPRNASF 466
|
|
| TIGR_CMR|BA_4802 BA_4802 "asparaginyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 841 (301.1 bits), Expect = 2.7e-124, Sum P(2) = 2.7e-124
Identities = 155/268 (57%), Positives = 200/268 (74%)
Query: 193 DFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL 252
DFF K LTVSGQLNAE YA A +VYTFGPTFRAENSNT+RH AEFWM+EPE+AFA+L
Sbjct: 197 DFFGKETNLTVSGQLNAEAYALAFRDVYTFGPTFRAENSNTTRHAAEFWMVEPEIAFAEL 256
Query: 253 KDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIEL 312
D M L+Y ++Y+L++ E+M+FFN++++K +++R++ V DF +++YT+AI++
Sbjct: 257 GDVMNLTEDMLKYAMKYVLEHAPEEMEFFNSFVDKTVLERMNNVINSDFGRITYTEAIKV 316
Query: 313 LIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVA 372
L ++ F++ V+WG DLQ+EHERYL+EE F PV V+DYPK+IKAFYMR NDDG+TVA
Sbjct: 317 LQESGADFKYPVEWGIDLQTEHERYLSEEIFKR-PVFVTDYPKDIKAFYMRLNDDGKTVA 375
Query: 373 AMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGF 432
A D+LVP IGELIGGSQ +N + YWWYL+LR YG HAGFGLGF
Sbjct: 376 ATDLLVPGIGELIGGSQREERMDVLVDRIKELGMNEEDYWWYLELRKYGGTKHAGFGLGF 435
Query: 433 ERLVQFATGVENIRDAIPFPRTPGSVEF 460
ER + + TG+ NIRD IPFPRTPGS EF
Sbjct: 436 ERFLMYITGMANIRDVIPFPRTPGSSEF 463
|
|
| TIGR_CMR|CPS_2591 CPS_2591 "asparaginyl-tRNA synthetase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 850 (304.3 bits), Expect = 1.2e-123, Sum P(2) = 1.2e-123
Identities = 162/268 (60%), Positives = 194/268 (72%)
Query: 193 DFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL 252
DFF K FLTVSGQLN ETY ALS VYTFGPTFRAENSNT+RHLAEFWM+EPE+AFADL
Sbjct: 200 DFFGKETFLTVSGQLNVETYCNALSKVYTFGPTFRAENSNTTRHLAEFWMVEPEIAFADL 259
Query: 253 KDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIEL 312
D A L+YV + +L+ +DM FF ++K ++DRL++V DFV+L YTDAI +
Sbjct: 260 SDAADLAEEMLKYVFKAVLEERPDDMAFFQQRVDKTVLDRLNSVINTDFVRLDYTDAITI 319
Query: 313 LIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVA 372
L KKFE V WG DL SEHERYL EE F G PV++ +YPK+IK+FYMR NDDG+TVA
Sbjct: 320 LENCGKKFENQVSWGVDLNSEHERYLAEEHFNG-PVVLQNYPKDIKSFYMRLNDDGKTVA 378
Query: 373 AMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGF 432
AMD+L P IGE+IGGSQ L+ Y WY DLR YG+VPH+GFGLGF
Sbjct: 379 AMDILAPGIGEIIGGSQREERLDVLDSRLEEMGLDIADYGWYRDLRRYGTVPHSGFGLGF 438
Query: 433 ERLVQFATGVENIRDAIPFPRTPGSVEF 460
ERLV +ATG++N+RD IPFPRTP + F
Sbjct: 439 ERLVAYATGMQNVRDVIPFPRTPNNAAF 466
|
|
| TAIR|locus:2165001 SYNC1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 830 (297.2 bits), Expect = 3.5e-122, Sum P(2) = 3.5e-122
Identities = 164/270 (60%), Positives = 197/270 (72%)
Query: 193 DFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL 252
DFF + AFLTVSGQL ETYA ALSNVYTFGPTFRAENS+TSRHLAEFWM+EPE+AFADL
Sbjct: 303 DFFGRQAFLTVSGQLQVETYACALSNVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADL 362
Query: 253 KDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIEL 312
+DDM CA AY++Y+ ++L+ C DM+ + G IDRL VA F +++YT AIEL
Sbjct: 363 EDDMNCAEAYVKYMCNWLLEKCYADMELMAKNFDSGCIDRLKLVASTPFGRITYTKAIEL 422
Query: 313 LIKAK---KKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGR 369
L +A K+F+ V+WG DL SEHERYLTE F P+IV +YPK IKAFYMR NDD +
Sbjct: 423 LEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQK-PLIVYNYPKGIKAFYMRLNDDEK 481
Query: 370 TVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFG 429
TVAAMD+LVP++GELIGGSQ L + Y WYLDLR YG+V H GFG
Sbjct: 482 TVAAMDVLVPKVGELIGGSQREERYDVIKKRIEEMGLPIEPYEWYLDLRRYGTVKHCGFG 541
Query: 430 LGFERLVQFATGVENIRDAIPFPRTPGSVE 459
LGFER++ FATG++NIRD IPFPR PG +
Sbjct: 542 LGFERMILFATGLDNIRDVIPFPRYPGKAD 571
|
|
| UNIPROTKB|Q9KSF9 asnS "Asparagine--tRNA ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 824 (295.1 bits), Expect = 1.5e-121, Sum P(2) = 1.5e-121
Identities = 161/268 (60%), Positives = 189/268 (70%)
Query: 193 DFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL 252
DFF K FLTVSGQLNAE YA A+S VYTFGPTFRAENSNTSRHLAEFWM+EPE+AFADL
Sbjct: 200 DFFGKETFLTVSGQLNAEAYACAISKVYTFGPTFRAENSNTSRHLAEFWMVEPEVAFADL 259
Query: 253 KDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIEL 312
A L+YV + +L ++D++FFN I +I RL E DF Q+ YTDAIE+
Sbjct: 260 NTVAKLAEDMLKYVFKAVLAERRDDLEFFNDRINNEVIARLEQFVESDFAQVDYTDAIEI 319
Query: 313 LIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVA 372
L K FEF V+WG DL SEHER+L EE F PVIV +YPK+IKAFYMR N+DG+TVA
Sbjct: 320 LKNCGKTFEFPVEWGIDLASEHERFLAEEHFKA-PVIVKNYPKDIKAFYMRMNEDGKTVA 378
Query: 373 AMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGF 432
AMD+L P IGE+IGGSQ ++ + WY DLR YG+VPHAGFGLGF
Sbjct: 379 AMDVLAPGIGEIIGGSQREERLDILDARMREFGIDPEHMDWYRDLRRYGTVPHAGFGLGF 438
Query: 433 ERLVQFATGVENIRDAIPFPRTPGSVEF 460
ERLV + TG+ N+RD IPFPRTP S F
Sbjct: 439 ERLVSYVTGMGNVRDVIPFPRTPRSASF 466
|
|
| TIGR_CMR|VC_1297 VC_1297 "asparaginyl-tRNA synthetase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 824 (295.1 bits), Expect = 1.5e-121, Sum P(2) = 1.5e-121
Identities = 161/268 (60%), Positives = 189/268 (70%)
Query: 193 DFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL 252
DFF K FLTVSGQLNAE YA A+S VYTFGPTFRAENSNTSRHLAEFWM+EPE+AFADL
Sbjct: 200 DFFGKETFLTVSGQLNAEAYACAISKVYTFGPTFRAENSNTSRHLAEFWMVEPEVAFADL 259
Query: 253 KDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIEL 312
A L+YV + +L ++D++FFN I +I RL E DF Q+ YTDAIE+
Sbjct: 260 NTVAKLAEDMLKYVFKAVLAERRDDLEFFNDRINNEVIARLEQFVESDFAQVDYTDAIEI 319
Query: 313 LIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVA 372
L K FEF V+WG DL SEHER+L EE F PVIV +YPK+IKAFYMR N+DG+TVA
Sbjct: 320 LKNCGKTFEFPVEWGIDLASEHERFLAEEHFKA-PVIVKNYPKDIKAFYMRMNEDGKTVA 378
Query: 373 AMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGF 432
AMD+L P IGE+IGGSQ ++ + WY DLR YG+VPHAGFGLGF
Sbjct: 379 AMDVLAPGIGEIIGGSQREERLDILDARMREFGIDPEHMDWYRDLRRYGTVPHAGFGLGF 438
Query: 433 ERLVQFATGVENIRDAIPFPRTPGSVEF 460
ERLV + TG+ N+RD IPFPRTP S F
Sbjct: 439 ERLVSYVTGMGNVRDVIPFPRTPRSASF 466
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A3D3V7 | SYN_SHEB5 | 6, ., 1, ., 1, ., 2, 2 | 0.5698 | 0.9478 | 0.9356 | yes | no |
| O48593 | SYNO_ARATH | 6, ., 1, ., 1, ., 2, 2 | 0.7926 | 1.0 | 0.8112 | yes | no |
| B1XKH1 | SYN_SYNP2 | 6, ., 1, ., 1, ., 2, 2 | 0.5615 | 0.9282 | 0.9282 | yes | no |
| P43829 | SYN_HAEIN | 6, ., 1, ., 1, ., 2, 2 | 0.5520 | 0.9673 | 0.9528 | yes | no |
| A1S684 | SYN_SHEAM | 6, ., 1, ., 1, ., 2, 2 | 0.5739 | 0.9326 | 0.9206 | yes | no |
| Q317J6 | SYN_DESDG | 6, ., 1, ., 1, ., 2, 2 | 0.5650 | 0.9260 | 0.9240 | yes | no |
| Q5QZ13 | SYN_IDILO | 6, ., 1, ., 1, ., 2, 2 | 0.5701 | 0.9282 | 0.9163 | yes | no |
| Q6ANL4 | SYN_DESPS | 6, ., 1, ., 1, ., 2, 2 | 0.5833 | 0.9195 | 0.9420 | yes | no |
| A1RK52 | SYN_SHESW | 6, ., 1, ., 1, ., 2, 2 | 0.5655 | 0.9478 | 0.9356 | yes | no |
| Q24MK1 | SYN_DESHY | 6, ., 1, ., 1, ., 2, 2 | 0.5698 | 0.9217 | 0.9157 | yes | no |
| P52276 | SYN_SYNY3 | 6, ., 1, ., 1, ., 2, 2 | 0.5896 | 0.9282 | 0.9242 | N/A | no |
| A8FVU8 | SYN_SHESH | 6, ., 1, ., 1, ., 2, 2 | 0.5594 | 0.9347 | 0.9227 | yes | no |
| Q97E56 | SYN_CLOAB | 6, ., 1, ., 1, ., 2, 2 | 0.5434 | 0.9326 | 0.9265 | yes | no |
| Q0HUL3 | SYN_SHESR | 6, ., 1, ., 1, ., 2, 2 | 0.5633 | 0.9478 | 0.9356 | yes | no |
| A5G5R2 | SYN_GEOUR | 6, ., 1, ., 1, ., 2, 2 | 0.5711 | 0.9369 | 0.9349 | yes | no |
| A0PY64 | SYN_CLONN | 6, ., 1, ., 1, ., 2, 2 | 0.5657 | 0.9326 | 0.9265 | yes | no |
| Q0HIB6 | SYN_SHESM | 6, ., 1, ., 1, ., 2, 2 | 0.5611 | 0.9478 | 0.9356 | yes | no |
| A7GB01 | SYN_CLOBL | 6, ., 1, ., 1, ., 2, 2 | 0.5515 | 0.9260 | 0.9200 | yes | no |
| A3DBI2 | SYN_CLOTH | 6, ., 1, ., 1, ., 2, 2 | 0.5783 | 0.9391 | 0.9310 | yes | no |
| B0JN99 | SYN_MICAN | 6, ., 1, ., 1, ., 2, 2 | 0.6104 | 0.9282 | 0.9405 | yes | no |
| Q3IGU4 | SYN_PSEHT | 6, ., 1, ., 1, ., 2, 2 | 0.5607 | 0.9347 | 0.9247 | yes | no |
| Q72G53 | SYN_DESVH | 6, ., 1, ., 1, ., 2, 2 | 0.5794 | 0.9282 | 0.9262 | yes | no |
| P58692 | SYN_NOSS1 | 6, ., 1, ., 1, ., 2, 2 | 0.5804 | 0.9413 | 0.9352 | yes | no |
| P58693 | SYN_CLOPE | 6, ., 1, ., 1, ., 2, 2 | 0.5548 | 0.9260 | 0.9161 | yes | no |
| A5UF16 | SYN_HAEIG | 6, ., 1, ., 1, ., 2, 2 | 0.5541 | 0.9673 | 0.9528 | yes | no |
| A4Y6E4 | SYN_SHEPC | 6, ., 1, ., 1, ., 2, 2 | 0.5655 | 0.9478 | 0.9356 | yes | no |
| A8MJ91 | SYN_ALKOO | 6, ., 1, ., 1, ., 2, 2 | 0.5501 | 0.9326 | 0.9265 | yes | no |
| A6WMP4 | SYN_SHEB8 | 6, ., 1, ., 1, ., 2, 2 | 0.5698 | 0.9478 | 0.9356 | yes | no |
| Q9CN06 | SYN_PASMU | 6, ., 1, ., 1, ., 2, 2 | 0.5477 | 0.9673 | 0.9528 | yes | no |
| A1V9B8 | SYN_DESVV | 6, ., 1, ., 1, ., 2, 2 | 0.5794 | 0.9282 | 0.9262 | yes | no |
| Q12MT5 | SYN_SHEDO | 6, ., 1, ., 1, ., 2, 2 | 0.5695 | 0.9369 | 0.9248 | yes | no |
| A5HZE1 | SYN_CLOBH | 6, ., 1, ., 1, ., 2, 2 | 0.5560 | 0.9260 | 0.9200 | yes | no |
| Q0SQ51 | SYN_CLOPS | 6, ., 1, ., 1, ., 2, 2 | 0.5548 | 0.9260 | 0.9161 | yes | no |
| Q8DG51 | SYN_THEEB | 6, ., 1, ., 1, ., 2, 2 | 0.5973 | 0.9391 | 0.9350 | yes | no |
| Q081Q0 | SYN_SHEFN | 6, ., 1, ., 1, ., 2, 2 | 0.5630 | 0.9434 | 0.9313 | yes | no |
| Q8EEZ1 | SYN_SHEON | 6, ., 1, ., 1, ., 2, 2 | 0.5611 | 0.9478 | 0.9356 | yes | no |
| Q74E08 | SYN_GEOSL | 6, ., 1, ., 1, ., 2, 2 | 0.5524 | 0.9630 | 0.9609 | yes | no |
| Q73P19 | SYN_TREDE | 6, ., 1, ., 1, ., 2, 2 | 0.5574 | 0.9347 | 0.9090 | yes | no |
| Q6MEC9 | SYN_PARUW | 6, ., 1, ., 1, ., 2, 2 | 0.6025 | 0.9739 | 0.9593 | yes | no |
| A3QE68 | SYN_SHELP | 6, ., 1, ., 1, ., 2, 2 | 0.5660 | 0.9347 | 0.9227 | yes | no |
| A7FRK8 | SYN_CLOB1 | 6, ., 1, ., 1, ., 2, 2 | 0.5560 | 0.9260 | 0.9200 | yes | no |
| Q899M9 | SYN_CLOTE | 6, ., 1, ., 1, ., 2, 2 | 0.5405 | 0.9673 | 0.9611 | yes | no |
| A6LPI6 | SYN_CLOB8 | 6, ., 1, ., 1, ., 2, 2 | 0.5560 | 0.9260 | 0.9181 | yes | no |
| Q0TMF3 | SYN_CLOP1 | 6, ., 1, ., 1, ., 2, 2 | 0.5548 | 0.9260 | 0.9161 | yes | no |
| A5UCB9 | SYN_HAEIE | 6, ., 1, ., 1, ., 2, 2 | 0.5498 | 0.9673 | 0.9528 | yes | no |
| A9KZ30 | SYN_SHEB9 | 6, ., 1, ., 1, ., 2, 2 | 0.5676 | 0.9478 | 0.9356 | yes | no |
| A5N4F7 | SYN_CLOK5 | 6, ., 1, ., 1, ., 2, 2 | 0.5403 | 0.9260 | 0.9200 | yes | no |
| B2UXS0 | SYN_CLOBA | 6, ., 1, ., 1, ., 2, 2 | 0.5560 | 0.9260 | 0.9181 | yes | no |
| Q8RH70 | SYN_FUSNN | 6, ., 1, ., 1, ., 2, 2 | 0.5409 | 0.9652 | 0.9631 | yes | no |
| B2TI01 | SYN_CLOBB | 6, ., 1, ., 1, ., 2, 2 | 0.5560 | 0.9260 | 0.9181 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.22 | 0.991 |
| 3rd Layer | 6.1.1 | 0.976 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | gw1.VII.776.1 | asparaginyl-tRNA synthetase (EC-6.1.1.22) (571 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | fgenesh4_pg.C_LG_VIII001519 | glutamyl-tRNA(Gln) amidotransferase (EC-6.3.5.7) (506 aa) | • | 0.899 | |||||||
 | eugene3.00180130 | hypothetical protein (141 aa) | • | 0.899 | |||||||
 | estExt_fgenesh4_pm.C_LG_X0145 | glutamyl-tRNA(Gln) amidotransferase (529 aa) | • | 0.899 | |||||||
 | gw1.XI.1444.1 | aminoacyl-tRNA ligase (EC-6.1.1.4) (889 aa) | • | • | 0.597 | ||||||
 | eugene3.114390001 | Predicted protein (351 aa) | • | 0.412 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 460 | |||
| PLN02603 | 565 | PLN02603, PLN02603, asparaginyl-tRNA synthetase | 0.0 | |
| PRK03932 | 450 | PRK03932, asnC, asparaginyl-tRNA synthetase; Valid | 0.0 | |
| TIGR00457 | 453 | TIGR00457, asnS, asparaginyl-tRNA synthetase | 0.0 | |
| COG0017 | 435 | COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetas | 0.0 | |
| cd00776 | 322 | cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/As | 1e-151 | |
| PLN02221 | 572 | PLN02221, PLN02221, asparaginyl-tRNA synthetase | 1e-130 | |
| PTZ00425 | 586 | PTZ00425, PTZ00425, asparagine-tRNA ligase; Provis | 1e-124 | |
| PLN02532 | 633 | PLN02532, PLN02532, asparagine-tRNA synthetase | 1e-108 | |
| pfam00152 | 345 | pfam00152, tRNA-synt_2, tRNA synthetases class II | 2e-81 | |
| PRK05159 | 437 | PRK05159, aspC, aspartyl-tRNA synthetase; Provisio | 8e-81 | |
| TIGR00458 | 428 | TIGR00458, aspS_nondisc, nondiscriminating asparty | 5e-57 | |
| PRK06462 | 335 | PRK06462, PRK06462, asparagine synthetase A; Revie | 2e-53 | |
| PLN02221 | 572 | PLN02221, PLN02221, asparaginyl-tRNA synthetase | 4e-50 | |
| PLN02850 | 530 | PLN02850, PLN02850, aspartate-tRNA ligase | 3e-38 | |
| PLN02532 | 633 | PLN02532, PLN02532, asparagine-tRNA synthetase | 9e-37 | |
| PTZ00425 | 586 | PTZ00425, PTZ00425, asparagine-tRNA ligase; Provis | 5e-33 | |
| cd00669 | 269 | cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA syn | 5e-33 | |
| cd04318 | 82 | cd04318, EcAsnRS_like_N, EcAsnRS_like_N: N-termina | 3e-30 | |
| PTZ00401 | 550 | PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Prov | 1e-27 | |
| cd04100 | 85 | cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-ter | 1e-15 | |
| TIGR00499 | 496 | TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukar | 1e-15 | |
| COG1190 | 502 | COG1190, LysU, Lysyl-tRNA synthetase (class II) [T | 3e-15 | |
| cd00777 | 280 | cd00777, AspRS_core, Asp tRNA synthetase (aspRS) c | 2e-13 | |
| PRK12445 | 505 | PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewe | 2e-10 | |
| cd00775 | 329 | cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) c | 1e-09 | |
| TIGR00459 | 583 | TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba | 9e-09 | |
| PRK00484 | 491 | PRK00484, lysS, lysyl-tRNA synthetase; Reviewed | 1e-08 | |
| COG0173 | 585 | COG0173, AspS, Aspartyl-tRNA synthetase [Translati | 6e-08 | |
| TIGR00459 | 583 | TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba | 3e-07 | |
| cd00768 | 211 | cd00768, class_II_aaRS-like_core, Class II tRNA am | 4e-07 | |
| PRK00476 | 588 | PRK00476, aspS, aspartyl-tRNA synthetase; Validate | 6e-07 | |
| cd04323 | 84 | cd04323, AsnRS_cyto_like_N, AsnRS_cyto_like_N: N-t | 1e-06 | |
| PLN02903 | 652 | PLN02903, PLN02903, aminoacyl-tRNA ligase | 1e-05 | |
| COG0173 | 585 | COG0173, AspS, Aspartyl-tRNA synthetase [Translati | 3e-05 | |
| PLN02502 | 553 | PLN02502, PLN02502, lysyl-tRNA synthetase | 4e-05 | |
| PRK00476 | 588 | PRK00476, aspS, aspartyl-tRNA synthetase; Validate | 3e-04 | |
| cd04320 | 102 | cd04320, AspRS_cyto_N, AspRS_cyto_N: N-terminal, a | 8e-04 | |
| PLN02903 | 652 | PLN02903, PLN02903, aminoacyl-tRNA ligase | 0.003 | |
| cd04319 | 103 | cd04319, PhAsnRS_like_N, PhAsnRS_like_N: N-termina | 0.004 |
| >gnl|CDD|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 939 bits (2427), Expect = 0.0
Identities = 406/486 (83%), Positives = 432/486 (88%), Gaps = 27/486 (5%)
Query: 2 GSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNM 61
G VGEFRKKL+I DVKGG +EGL RVG + V GWVRTLRAQSSVTFIEVNDGSCLSNM
Sbjct: 80 GEAVGEFRKKLRIADVKGGEDEGLARVGKTLNVMGWVRTLRAQSSVTFIEVNDGSCLSNM 139
Query: 62 QCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121
QCVMT DAEGYDQV+SGLITTGAS+ +QG VV SQG KQKVELKV+KIV+VGKSDPSYPI
Sbjct: 140 QCVMTPDAEGYDQVESGLITTGASVLVQGTVVSSQGGKQKVELKVSKIVVVGKSDPSYPI 199
Query: 122 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE 181
QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDCE
Sbjct: 200 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCE 259
Query: 182 GAGEQFCVTTL---------------------------DFFEKPAFLTVSGQLNAETYAT 214
GAGEQFCVTTL DFF KPAFLTVSGQLN ETYAT
Sbjct: 260 GAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGETYAT 319
Query: 215 ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC 274
ALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV+YIL+NC
Sbjct: 320 ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILENC 379
Query: 275 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 334
KEDM+FFNTWIEKGIIDRLS V E++FVQLSYTDAIELL+KAKKKFEF VKWG DLQSEH
Sbjct: 380 KEDMEFFNTWIEKGIIDRLSDVVEKNFVQLSYTDAIELLLKAKKKFEFPVKWGLDLQSEH 439
Query: 335 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERL 394
ERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPR+GELIGGSQREERL
Sbjct: 440 ERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRVGELIGGSQREERL 499
Query: 395 EYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 454
EYLE RLDELKLN++SYWWYLDLR YGSVPHAGFGLGFERLVQFATG++NIRDAIPFPR
Sbjct: 500 EYLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFPRV 559
Query: 455 PGSVEF 460
PGS EF
Sbjct: 560 PGSAEF 565
|
Length = 565 |
| >gnl|CDD|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 785 bits (2029), Expect = 0.0
Identities = 273/457 (59%), Positives = 336/457 (73%), Gaps = 14/457 (3%)
Query: 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA 69
++ I D+ G VG + V GWVRT R + F+++ DGSC +Q V +
Sbjct: 2 MRVSIKDILKG-----KYVGQEVTVRGWVRTKRDSGKIAFLQLRDGSCFKQLQVVKDNGE 56
Query: 70 EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE 129
E ++++K +TTG+S+ + G VV S + Q EL+ KI ++G+ YPIQKKR S E
Sbjct: 57 EYFEEIKK--LTTGSSVIVTGTVVESPRAGQGYELQATKIEVIGEDPEDYPIQKKRHSIE 114
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
FLR AHLRPRTN FGAV R+RN LA A H+FF ENGF+W+ +PIITASDCEGAGE F V
Sbjct: 115 FLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNENGFVWVDTPIITASDCEGAGELFRV 174
Query: 190 TTL------DFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMI 243
TTL DFF K A+LTVSGQL AE YA AL VYTFGPTFRAENSNT RHLAEFWMI
Sbjct: 175 TTLDLDFSKDFFGKEAYLTVSGQLYAEAYAMALGKVYTFGPTFRAENSNTRRHLAEFWMI 234
Query: 244 EPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQ 303
EPE+AFADL+D+M A L+YVV+Y+L+NC +D++F N ++KG I+RL E F +
Sbjct: 235 EPEMAFADLEDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERLENFIESPFPR 294
Query: 304 LSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMR 363
++YT+AIE+L K+ KKFEF V+WG DL SEHERYL EE F PV V++YPK+IKAFYMR
Sbjct: 295 ITYTEAIEILQKSGKKFEFPVEWGDDLGSEHERYLAEEHF-KKPVFVTNYPKDIKAFYMR 353
Query: 364 QNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSV 423
N DG+TVAAMD+L P IGE+IGGSQREERL+ LE R+ EL LN++ YWWYLDLR YGSV
Sbjct: 354 LNPDGKTVAAMDLLAPGIGEIIGGSQREERLDVLEARIKELGLNKEDYWWYLDLRRYGSV 413
Query: 424 PHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 460
PH+GFGLGFERLV + TG++NIRD IPFPRTPG EF
Sbjct: 414 PHSGFGLGFERLVAYITGLDNIRDVIPFPRTPGRAEF 450
|
Length = 450 |
| >gnl|CDD|232982 TIGR00457, asnS, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 629 bits (1625), Expect = 0.0
Identities = 250/440 (56%), Positives = 324/440 (73%), Gaps = 8/440 (1%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + V+GWVRT R+ + F+E+NDGS L +Q V+ + Y +TTG+S+
Sbjct: 15 VGDEVTVSGWVRTKRSSKKIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKSLTTGSSVS 74
Query: 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGA 146
+ G VV S G Q VEL+V KI +VG+++P YP+QKK S EFLR AHLR RTNT GA
Sbjct: 75 VTGKVVESPGKGQPVELQVKKIEVVGEAEPDDYPLQKKEHSLEFLRDIAHLRLRTNTLGA 134
Query: 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTL------DFFEKPAF 200
V RVRNAL+ A H++FQENGF W+S PI+T++DCEGAGE F V+T DFF K A+
Sbjct: 135 VMRVRNALSQAIHRYFQENGFTWVSPPILTSNDCEGAGELFRVSTGNIDFSQDFFGKEAY 194
Query: 201 LTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACAT 260
LTVSGQL ETYA ALS VYTFGPTFRAE SNTSRHL+EFWMIEPE+AFA+L D + A
Sbjct: 195 LTVSGQLYLETYALALSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFANLNDLLQLAE 254
Query: 261 AYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKF 320
++Y+++ +L+NC +++ F +K +I RL + F +++YTDAIE+L ++ K F
Sbjct: 255 TLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINNKFARITYTDAIEILKESDKNF 314
Query: 321 EFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPR 380
E+ WG DLQ+EHER+L EE F PV V++YPK+IKAFYM+ NDDG+TVAAMD+L P
Sbjct: 315 EYEDFWGDDLQTEHERFLAEEYFKP-PVFVTNYPKDIKAFYMKLNDDGKTVAAMDLLAPG 373
Query: 381 IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFAT 440
IGE+IGGS+RE+ L+ LE R+ E+ L+ D+ WYLDLR YGSVPH+GFGLGFERL+ + T
Sbjct: 374 IGEIIGGSEREDDLDKLENRMKEMGLDTDALNWYLDLRKYGSVPHSGFGLGFERLLAYIT 433
Query: 441 GVENIRDAIPFPRTPGSVEF 460
G+ENIRDAIPFPRTPG++ F
Sbjct: 434 GLENIRDAIPFPRTPGNINF 453
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn [Protein synthesis, tRNA aminoacylation]. Length = 453 |
| >gnl|CDD|223096 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 559 bits (1442), Expect = 0.0
Identities = 203/455 (44%), Positives = 275/455 (60%), Gaps = 22/455 (4%)
Query: 8 FRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTS 67
K+ I D+K P+ G V V GWV R + F+ + DGS +Q V+
Sbjct: 1 MMKRTYIKDIK--PHVGGQEV----TVRGWVHNKRDLGKIIFLVLRDGSGF--IQAVVPK 52
Query: 68 DAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS 127
+ + K+ +T +S+ + G V S + Q EL+V KI ++G++DP YPI KK S
Sbjct: 53 NKVYEELFKAKKLTLESSVVVTGIVKASPKAPQGFELQVEKIEVLGEADPPYPIDKKEHS 112
Query: 128 R-EFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ 186
E L HL RT AV ++R+++ A +FF ENGF + +PIITAS EG GE
Sbjct: 113 ELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYENGFTEVHTPIITASATEGGGEL 172
Query: 187 FCVTTLDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPE 246
F +D+F+K A+LT S QL E A AL V+T GPTFRAE SNT RHL+EFWM++PE
Sbjct: 173 F---KVDYFDKEAYLTQSPQLYKEALAAALERVFTIGPTFRAEKSNTRRHLSEFWMLDPE 229
Query: 247 LAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSY 306
+AFADL D M A ++Y+ + +L+ C ++++F + L F +++Y
Sbjct: 230 MAFADLNDVMDLAEELIKYLFKKVLEECADELEFLGRDNSE-----LKRPESAPFPRITY 284
Query: 307 TDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND 366
+AIE+L +K FE V+WG DL +EHERYL EE F PV V++YPKEIK FYMR +
Sbjct: 285 KEAIEIL--EEKGFEK-VEWGDDLGTEHERYLGEEYFKP-PVFVTNYPKEIKPFYMRPDP 340
Query: 367 DG-RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPH 425
D TVA+ D+L P GE+IGGSQRE + L R+ E L+ +SY WYLDLR YG PH
Sbjct: 341 DNPGTVASFDLLAPGGGEIIGGSQREHDYDLLVERIKEKGLDPESYEWYLDLRKYGMPPH 400
Query: 426 AGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 460
AGFGLG ERLV + G++NIR+AIPFPR PG +
Sbjct: 401 AGFGLGLERLVMYILGLDNIREAIPFPRDPGRLYP 435
|
Length = 435 |
| >gnl|CDD|238399 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Score = 431 bits (1111), Expect = e-151
Identities = 146/334 (43%), Positives = 201/334 (60%), Gaps = 14/334 (4%)
Query: 125 RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAG 184
+ E L HL RT A+ R+R+ + A +F +ENGF + +P IT++D EG
Sbjct: 1 DANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGA 60
Query: 185 EQFCVTTLDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIE 244
E F + +F KPA+L S QL E AL VY GP FRAE SNT RHL+EFWM+E
Sbjct: 61 ELF---KVSYFGKPAYLAQSPQLYKEMLIAALERVYEIGPVFRAEKSNTRRHLSEFWMLE 117
Query: 245 PELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQ 303
E+AF D + M ++Y+ + +L+ C ++++ N ++R F +
Sbjct: 118 AEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVN------QLNRELLKPLEPFPR 171
Query: 304 LSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMR 363
++Y +AIELL + + E VKWG DL +EHER L E G PV V+DYPKEIK FYM+
Sbjct: 172 ITYDEAIELLREKGVEEE--VKWGEDLSTEHERLLGEIVKGD-PVFVTDYPKEIKPFYMK 228
Query: 364 QNDD-GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS 422
+DD TV + D+L+P +GE++GGSQR + LE R+ E L+ +S+ WYLDLR YG
Sbjct: 229 PDDDNPETVESFDLLMPGVGEIVGGSQRIHDYDELEERIKEHGLDPESFEWYLDLRKYGM 288
Query: 423 VPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 456
PH GFGLG ERLV + G++NIR+AI FPR P
Sbjct: 289 PPHGGFGLGLERLVMWLLGLDNIREAILFPRDPK 322
|
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Length = 322 |
| >gnl|CDD|177867 PLN02221, PLN02221, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 388 bits (999), Expect = e-130
Identities = 170/271 (62%), Positives = 212/271 (78%), Gaps = 4/271 (1%)
Query: 193 DFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL 252
DFF + AFLTVSGQL ETYA ALS+VYTFGPTFRAENS+TSRHLAEFWM+EPE+AFADL
Sbjct: 303 DFFGRQAFLTVSGQLQVETYACALSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADL 362
Query: 253 KDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIEL 312
+DDM CA AY++Y+ +++LD C +DM+ + G IDRL VA F +++YT+AIEL
Sbjct: 363 EDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAIEL 422
Query: 313 LIKA---KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGR 369
L +A K+F+ V+WG DL SEHERYLTE F P+IV +YPK IKAFYMR NDD +
Sbjct: 423 LEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQK-PLIVYNYPKGIKAFYMRLNDDEK 481
Query: 370 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFG 429
TVAAMD+LVP++GELIGGSQREER + ++ R++E+ L + Y WYLDLR YG+V H GFG
Sbjct: 482 TVAAMDVLVPKVGELIGGSQREERYDVIKQRIEEMGLPIEPYEWYLDLRRYGTVKHCGFG 541
Query: 430 LGFERLVQFATGVENIRDAIPFPRTPGSVEF 460
LGFER++ FATG++NIRD IPFPR PG +
Sbjct: 542 LGFERMILFATGIDNIRDVIPFPRYPGKADL 572
|
Length = 572 |
| >gnl|CDD|240414 PTZ00425, PTZ00425, asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Score = 373 bits (959), Expect = e-124
Identities = 160/268 (59%), Positives = 206/268 (76%), Gaps = 1/268 (0%)
Query: 193 DFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL 252
DFF K AFLTVSGQL+ E +++ +VYTFGPTFRAENS+TSRHLAEFWMIEPE+AFADL
Sbjct: 320 DFFSKQAFLTVSGQLSLENLCSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAFADL 379
Query: 253 KDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIEL 312
D+M A +Y++Y + Y+L+N +D+ +F +E G+I RL + + DF +++YT+ I+L
Sbjct: 380 YDNMELAESYIKYCIGYVLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNVIDL 439
Query: 313 LIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVA 372
L FE VKWG DLQSEHER++ E+ F PVIV +YPK++KAFYM+ N+D +TVA
Sbjct: 440 LQPYSDSFEVPVKWGMDLQSEHERFVAEQIFKK-PVIVYNYPKDLKAFYMKLNEDQKTVA 498
Query: 373 AMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGF 432
AMD+LVP+IGE+IGGSQRE+ LE L+ + E KLN +SYWWY LR +GS PHAGFGLGF
Sbjct: 499 AMDVLVPKIGEVIGGSQREDNLERLDKMIKEKKLNMESYWWYRQLRKFGSHPHAGFGLGF 558
Query: 433 ERLVQFATGVENIRDAIPFPRTPGSVEF 460
ERL+ TGV+NI+D IPFPR PG EF
Sbjct: 559 ERLIMLVTGVDNIKDTIPFPRYPGHAEF 586
|
Length = 586 |
| >gnl|CDD|215291 PLN02532, PLN02532, asparagine-tRNA synthetase | Back alignment and domain information |
|---|
Score = 333 bits (855), Expect = e-108
Identities = 160/365 (43%), Positives = 230/365 (63%), Gaps = 29/365 (7%)
Query: 111 LVGKSD----PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARV---RNALAYATHKFFQ 163
L+GKSD + + +S E + KA ++ +TN + R R AL A +
Sbjct: 279 LLGKSDDKEEKKPVHETEGISLEAV--KAAIKEKTNLVEELKRSESNREALVAAEQDLRK 336
Query: 164 ENGFIWISSPIITASDCEGAGEQFCVTTL---------DFFEKPAFLTVSGQLNAETYAT 214
N AS E + T++ DFF +P +LTVSG+L+ E+YA
Sbjct: 337 TNQL---------ASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESYAC 387
Query: 215 ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC 274
AL NVYTFGP FRA+ +++RHLAE WM+E E+AF++L+D M CA Y +++ +++L+NC
Sbjct: 388 ALGNVYTFGPRFRADRIDSARHLAEMWMVEVEMAFSELEDAMNCAEDYFKFLCKWVLENC 447
Query: 275 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA-KKKFEFLVKWGCDLQSE 333
EDM F + I+K I RL + ++SYT+A++LL +A KKFE +WG L +E
Sbjct: 448 SEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDKKFETKPEWGIALTTE 507
Query: 334 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREER 393
H YL +E + PVI+ +YPKE+K FY+R NDDG+TVAA D++VP++G +I GSQ EER
Sbjct: 508 HLSYLADEIYKK-PVIIYNYPKELKPFYVRLNDDGKTVAAFDLVVPKVGTVITGSQNEER 566
Query: 394 LEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 453
++ L R++EL L R+ Y WYLDLR +G+V H+GF LGFE +V FATG+ ++RDAIPFPR
Sbjct: 567 MDILNARIEELGLPREQYEWYLDLRRHGTVKHSGFSLGFELMVLFATGLPDVRDAIPFPR 626
Query: 454 TPGSV 458
+ G
Sbjct: 627 SWGKA 631
|
Length = 633 |
| >gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N) | Back alignment and domain information |
|---|
Score = 255 bits (653), Expect = 2e-81
Identities = 104/352 (29%), Positives = 157/352 (44%), Gaps = 29/352 (8%)
Query: 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ 186
S E +L R A ++R+ + A +F E GF+ + +PI+T S EG
Sbjct: 1 SEETRLKYRYLDLRRPKMQANLKLRSKIIKAIREFLDERGFLEVETPILTKSTPEGGARD 60
Query: 187 FCVTTLDFFEKPAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEP 245
F + F+ K A+L S QL + A V+ P FR E+ T RH EF ++
Sbjct: 61 F-LVPSKFYAKEAYLPQSPQLYKQLLMVAGFDRVFQIAPCFRDEDLRTDRHPPEFTQLDL 119
Query: 246 ELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAER------ 299
E++F D +D M ++YV + +L +E IE R+ T AE
Sbjct: 120 EMSFVDYEDVMDLTEDLIKYVFKKVLGKREELELLG---IELPEFPRI-TYAEAIERYGS 175
Query: 300 DFVQLSYTDAIELLIKAKKKFEFLVK----------WGCDLQSEHERYLTEEAFGGCPVI 349
D L + ++ + + K EF V G E L ++ PV
Sbjct: 176 DKPDLRFGLELKDVTEIFKGSEFKVFAEAGDVVDKALGALRSELGEENLGDK-DKDNPVF 234
Query: 350 VSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNR 408
V+D+P FYM +++D D+++ GE+ GGS R E R +EL L+
Sbjct: 235 VTDFPLFEHPFYMPKDEDPPGLAERFDLVLN-GGEIGGGSIRIHDPEEQRKRFEELGLDP 293
Query: 409 DS----YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 456
+ + +YLD YG PH G GLG +RLV TG+E+IR+ I FP+T
Sbjct: 294 EEAEEKFGFYLDALKYGMPPHGGIGLGLDRLVMLLTGLESIREVIAFPKTRK 345
|
Length = 345 |
| >gnl|CDD|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 256 bits (657), Expect = 8e-81
Identities = 136/442 (30%), Positives = 214/442 (48%), Gaps = 50/442 (11%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGLITTGASIWIQ 89
+ +AGWV +R + F+ + D S + +Q V+ E ++ +K + + + +
Sbjct: 19 VTLAGWVHEIRDLGGIAFLILRDRSGI--IQVVVKKKVDEELFETIK--KLKRESVVSVT 74
Query: 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHL------------ 137
G V + + VE+ +I ++ K++ P+ +S + A L
Sbjct: 75 GTVKANPKAPGGVEVIPEEIEVLNKAEEPLPLD---ISGK---VLAELDTRLDNRFLDLR 128
Query: 138 RPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEK 197
RPR A+ ++R+ + A +F ENGF I +P I AS EG E F + D+FEK
Sbjct: 129 RPRVR---AIFKIRSEVLRAFREFLYENGFTEIFTPKIVASGTEGGAELFPI---DYFEK 182
Query: 198 PAFLTVSGQLNAET-YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL-KDD 255
A+L S QL + V+ GP FRAE NTSRHL E+ I+ E+ F D +D
Sbjct: 183 EAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFIDDHEDV 242
Query: 256 MACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIK 315
M L+Y+ + +NC+++++ + V E +++Y +AIE+L
Sbjct: 243 MDLLENLLRYMYEDVAENCEKELELLGIELP---------VPETPIPRITYDEAIEILKS 293
Query: 316 AKKKFEFLVKWGCDLQSEHERYLTEEA---FGGCPVIVSDYPKEIKAFY-MRQNDDGRTV 371
+ + WG DL +E ER L E +G ++DYP E + FY M DD
Sbjct: 294 KGNE----ISWGDDLDTEGERLLGEYVKEEYGSDFYFITDYPSEKRPFYTMPDEDDPEIS 349
Query: 372 AAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLG 431
+ D+L + E+ G QR R + L + E LN +S+ +YL+ YG PH GFGLG
Sbjct: 350 KSFDLLFRGL-EITSGGQRIHRYDMLVESIKEKGLNPESFEFYLEAFKYGMPPHGGFGLG 408
Query: 432 FERLVQFATGVENIRDAIPFPR 453
ERL G+ENIR+A+ FPR
Sbjct: 409 LERLTMKLLGLENIREAVLFPR 430
|
Length = 437 |
| >gnl|CDD|129550 TIGR00458, aspS_nondisc, nondiscriminating aspartyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 194 bits (494), Expect = 5e-57
Identities = 129/430 (30%), Positives = 200/430 (46%), Gaps = 27/430 (6%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKS-GLITTGASIWIQG 90
+ GWV +R + F+ + D L +Q + + K + + + ++G
Sbjct: 15 VTFMGWVHEIRDLGGLIFVLLRDREGL--IQITAPAKKVSKNLFKWAKKLNLESVVAVRG 72
Query: 91 NVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLR---PRTNTFGAV 147
V + + E+ KI ++ ++ P+ L T+ R R T A+
Sbjct: 73 IVKIKEKAPGGFEIIPTKIEVINEAKEPLPLDPTEKVPAELDTRLDYRFLDLRRPTVQAI 132
Query: 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQL 207
R+R+ + + +F E GFI + +P + AS EG E F +T +FE+ AFL S QL
Sbjct: 133 FRIRSGVLESVREFLAEEGFIEVHTPKLVASATEGGTELFPIT---YFEREAFLGQSPQL 189
Query: 208 NAETY-ATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYV 266
+ A VY GP FRAE NT RHL E I+ E+AF D D M + V
Sbjct: 190 YKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDHHDVMDILEELVVRV 249
Query: 267 VRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKW 326
+ + C ++ +EK E FV+L+Y +AIE+ + + W
Sbjct: 250 FEDVPERCAHQLETLEFKLEK---------PEGKFVRLTYDEAIEMANAKGVE----IGW 296
Query: 327 GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGELI 385
G DL +E E+ L EE G ++D+P EI+ FY M D+ + D++ R E+
Sbjct: 297 GEDLSTEAEKALGEEMDG--LYFITDWPTEIRPFYTMPDEDNPEISKSFDLMY-RDLEIS 353
Query: 386 GGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENI 445
G+QR + L R+ LN + + YL+ YG PHAG+GLG ER V F G++NI
Sbjct: 354 SGAQRIHLHDLLVERIKAKGLNPEGFKDYLEAFSYGMPPHAGWGLGAERFVMFLLGLKNI 413
Query: 446 RDAIPFPRTP 455
R+A+ FPR
Sbjct: 414 REAVLFPRDR 423
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn) [Protein synthesis, tRNA aminoacylation]. Length = 428 |
| >gnl|CDD|235808 PRK06462, PRK06462, asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
Score = 181 bits (462), Expect = 2e-53
Identities = 93/319 (29%), Positives = 162/319 (50%), Gaps = 25/319 (7%)
Query: 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC----EGAGEQFCVTTLDFFEKPAFLT 202
V +V++++ T +F GF+ + PII+ S G+ ++DF+ +L
Sbjct: 29 VLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDFYGVEYYLA 88
Query: 203 VSGQLNAETYATALSNVYTFGPTFRAEN--SNTSRHLAEFWMIEPELAFADLKDDMACAT 260
S L+ + L ++ P FR E +T RHL EF ++ E+ ADL + M
Sbjct: 89 DSMILHKQLALRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIE 148
Query: 261 AYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKF 320
++Y+V+ +L+ +++++FF R +R F ++++ +A+E+L + +
Sbjct: 149 DLIKYLVKELLEEHEDELEFFG---------RDLPHLKRPFKRITHKEAVEILNEEGCRG 199
Query: 321 EFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRT--VAAMDMLV 378
L + G SE E+ L+E P + D PK + FY R+ D R + D+L+
Sbjct: 200 IDLEELG----SEGEKSLSEHF--EEPFWIIDIPKGSREFYDRE-DPERPGVLRNYDLLL 252
Query: 379 P-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQ 437
P GE + G +RE E + R+ E ++ + Y WYL++ G +P AGFG+G ERL +
Sbjct: 253 PEGYGEAVSGGEREYEYEEIVERIREHGVDPEKYKWYLEMAKEGPLPSAGFGIGVERLTR 312
Query: 438 FATGVENIRDAIPFPRTPG 456
+ G+ +IR+ PFPR PG
Sbjct: 313 YICGLRHIREVQPFPRVPG 331
|
Length = 335 |
| >gnl|CDD|177867 PLN02221, PLN02221, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 179 bits (454), Expect = 4e-50
Identities = 91/192 (47%), Positives = 127/192 (66%), Gaps = 10/192 (5%)
Query: 7 EFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS--SVTFIEVNDGSCLSNMQCV 64
+F ++ I + P+ G G + + GWV+T R Q + F+EVNDGSC +N+Q +
Sbjct: 28 QFSDRVLIRSILDRPDGGAGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVM 87
Query: 65 MTSDAEGYDQVKSGLITTGASIWIQGNV-VP--SQGSKQKVELKVNKIVLVGKSDPS-YP 120
+ D+ YD S L+ TG + + G + VP +G+KQK+EL V K++ VG DP+ YP
Sbjct: 88 V--DSSLYDL--STLVATGTCVTVDGVLKVPPEGKGTKQKIELSVEKVIDVGTVDPTKYP 143
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
+ K +++ EFLR HLR RTN+ AVAR+RNALA+ATH FFQE+ F++I +PIIT SDC
Sbjct: 144 LPKTKLTLEFLRDVLHLRSRTNSISAVARIRNALAFATHSFFQEHSFLYIHTPIITTSDC 203
Query: 181 EGAGEQFCVTTL 192
EGAGE F VTTL
Sbjct: 204 EGAGEMFQVTTL 215
|
Length = 572 |
| >gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 3e-38
Identities = 120/466 (25%), Positives = 208/466 (44%), Gaps = 54/466 (11%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI----- 80
+ G +++ G V T+R + F+ + +QCV+ V G++
Sbjct: 78 ELAGSEVLIRGRVHTIRGKGKSAFLVLR--QSGFTVQCVVFVSE---VTVSKGMVKYAKQ 132
Query: 81 -TTGASIWIQGNVV----PSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR------- 128
+ + + ++G V P +G+ Q+VE++V KI V K+ + P + +R
Sbjct: 133 LSRESVVDVEGVVSVPKKPVKGTTQQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEK 192
Query: 129 ------EFLRTKAHLRP-------RTNTFGAVARVRNALAYATHKFFQENGFIWISSPII 175
+ +R R RT A+ R+++ + +F GF+ I +P +
Sbjct: 193 ALQTGEQLVRVGQDTRLNNRVLDLRTPANQAIFRIQSQVCNLFREFLLSKGFVEIHTPKL 252
Query: 176 TASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTS 234
A EG F LD+ +PA L S QL+ + V+ GP FRAE+S T
Sbjct: 253 IAGASEGGSAVF---RLDYKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSFTH 309
Query: 235 RHLAEFWMIEPELAFADLKDD-MACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRL 293
RHL EF ++ E+ + + + + + + CK++++ + L
Sbjct: 310 RHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLNERCKKELEAIREQYPFEPLKYL 369
Query: 294 STVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYL---TEEAFGGCPVIV 350
++L++ + I++L +A + + L DL +E ER L +E +G I+
Sbjct: 370 -----PKTLRLTFAEGIQMLKEAGVEVDPL----GDLNTESERKLGQLVKEKYGTDFYIL 420
Query: 351 SDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD 409
YP ++ FY M DD + + D+ + R E+I G+QR E LE R +E ++
Sbjct: 421 HRYPLAVRPFYTMPCPDDPKYSNSFDVFI-RGEEIISGAQRVHDPELLEKRAEECGIDVK 479
Query: 410 SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 455
+ Y+D YG+ PH GFG+G ER+V G+ NIR FPR P
Sbjct: 480 TISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDP 525
|
Length = 530 |
| >gnl|CDD|215291 PLN02532, PLN02532, asparagine-tRNA synthetase | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 9e-37
Identities = 76/194 (39%), Positives = 113/194 (58%), Gaps = 14/194 (7%)
Query: 3 SKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
S+V FR K++ GG + R I + ++ SV ++ ++DGSC++++Q
Sbjct: 96 SRVPIFRSIAKVL--SGGGSTYPVREKTEIAIQ---KSAPPPPSVAYLLISDGSCVASLQ 150
Query: 63 CVMTSDAEGYDQVKSGLITTGASIWIQG---NVVPSQGSKQKVELKVNKIVLVGKSDPS- 118
V+ S Q L+ TG I +G +P+QG K +EL+V KI+ +G DP
Sbjct: 151 VVVDSALAPLTQ----LMATGTCILAEGVLKLPLPAQG-KHVIELEVEKILHIGTVDPEK 205
Query: 119 YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
YP+ KKR+ + LR +H RPRT T +V RVR+AL +ATH FFQ++GF+++ PIIT +
Sbjct: 206 YPLSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQVPIITTT 265
Query: 179 DCEGAGEQFCVTTL 192
D G GE F VTTL
Sbjct: 266 DATGFGEMFRVTTL 279
|
Length = 633 |
| >gnl|CDD|240414 PTZ00425, PTZ00425, asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (330), Expect = 5e-33
Identities = 74/183 (40%), Positives = 103/183 (56%), Gaps = 21/183 (11%)
Query: 28 VGLMIVVAGWVRTLRAQSS--VTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGA 84
+ +I V GW + +R Q F+ +NDGSC N+Q ++ E Y+++ K G+ G
Sbjct: 80 IDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQSIENYEKLLKCGV---GC 136
Query: 85 SIWIQGNVV--PSQGS------KQKVELKVN-----KIVLVGKS-DPS-YPIQKKRVSRE 129
G ++ P Q K+ VEL + + G++ DP YP+ KK +E
Sbjct: 137 CFRFTGKLIISPVQNENKKGLLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKNHGKE 196
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
FLR AHLRPR+ +V R+RNALA ATH FFQ GF++I +P+IT SDCEG GE F V
Sbjct: 197 FLREVAHLRPRSYFISSVIRIRNALAIATHLFFQSRGFLYIHTPLITTSDCEGGGEMFTV 256
Query: 190 TTL 192
TTL
Sbjct: 257 TTL 259
|
Length = 586 |
| >gnl|CDD|238358 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 5e-33
Identities = 70/311 (22%), Positives = 117/311 (37%), Gaps = 50/311 (16%)
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLN 208
+VR+ + A F + GF+ + +P++ F V +L +S QL
Sbjct: 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVKYNAL-GLDYYLRISPQLF 60
Query: 209 AETY-ATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVV 267
+ L V+ FR E +RH EF M++ E+AFAD +D + ++++
Sbjct: 61 KKRLMVGGLDRVFEINRNFRNE-DLRARHQPEFTMMDLEMAFADYEDVIELTERLVRHLA 119
Query: 268 RYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWG 327
R +L F + G F +L+Y +A+E
Sbjct: 120 REVLGVTAVTYGFEL--EDFG----------LPFPRLTYREALERY-------------- 153
Query: 328 CDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGG 387
G P+ ++DYP E+ + +D +A L E+ G
Sbjct: 154 -----------------GQPLFLTDYPAEMHSPLASPHDVNPEIADAFDLFINGVEVGNG 196
Query: 388 SQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVE 443
S R + E +N + + +YL YG PH G G+G +RL+ T
Sbjct: 197 SSRLHDPDIQAEVFQEQGINKEAGMEYFEFYLKALEYGLPPHGGLGIGIDRLIMLMTNSP 256
Query: 444 NIRDAIPFPRT 454
IR+ I FP+
Sbjct: 257 TIREVIAFPKM 267
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. Length = 269 |
| >gnl|CDD|239813 cd04318, EcAsnRS_like_N, EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 3e-30
Identities = 33/83 (39%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ V GWVR++R ++FIE+NDGSCL N+Q V+ + + ++ ++TG+SI ++G
Sbjct: 2 VTVNGWVRSVRDSKKISFIELNDGSCLKNLQVVVDKELTNFKEIL--KLSTGSSIRVEGV 59
Query: 92 VVPSQGSKQKVELKVNKIVLVGK 114
+V S G+KQ EL+ KI ++G+
Sbjct: 60 LVKSPGAKQPFELQAEKIEVLGE 82
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. S. cerevisiae mtAsnRS can charge E.coli tRNA with asparagines. Mutations in the gene for S. cerevisiae mtAsnRS has been found to induce a "petite" phenotype typical for a mutation in a nuclear gene that results in a non-functioning mitochondrial protein synthesis system. Length = 82 |
| >gnl|CDD|173592 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (288), Expect = 1e-27
Identities = 126/481 (26%), Positives = 204/481 (42%), Gaps = 61/481 (12%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTG 83
+ V +++ V T R + + F+ + DGS + D E D + G I T
Sbjct: 75 ELVDKTVLIRARVSTTRKKGKMAFMVLRDGSDSVQAMAAVEGDVPKEMIDFI--GQIPTE 132
Query: 84 ASIWIQGNVVP-----SQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE--------F 130
+ + ++ V + S +ELKV KI V +S + P + SR+
Sbjct: 133 SIVDVEATVCKVEQPITSTSHSDIELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVN 192
Query: 131 LRTKAHLR---PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQF 187
T+ + R RT GA+ R+++ + +F ++ F I SP I + EG F
Sbjct: 193 FDTRLNSRWMDLRTPASGAIFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVF 252
Query: 188 CVTTLDFFEKPAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPE 246
L++F + A+L S QL + + V+ GP FR+ENSNT RHL EF ++ E
Sbjct: 253 ---KLEYFNRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHRHLTEFVGLDVE 309
Query: 247 LA---------------FADLKDDMACATAYLQYVVR------YILDNCKEDMDFFNTW- 284
+ F + + +A T L+ V + + E M
Sbjct: 310 MRINEHYYEVLDLAESLFNYIFERLATHTKELKAVCQQYPFEPLVWKLTPERMKELGVGV 369
Query: 285 IEKGIID------RLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERY- 337
I +G+ R+ + R ++++Y IELL E + D+ + +E+
Sbjct: 370 ISEGVEPTDKYQARVHNMDSR-MLRINYMHCIELL---NTVLEEKMAPTDDINTTNEKLL 425
Query: 338 --LTEEAFGGCPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREERL 394
L +E +G I +P + FY M DD R + DM + R E+ G+QR
Sbjct: 426 GKLVKERYGTDFFISDRFPSSARPFYTMECKDDERFTNSYDMFI-RGEEISSGAQRIHDP 484
Query: 395 EYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 454
+ L R L ++ Y+D G+ PH GFG+G ER+V G+ N+R A FPR
Sbjct: 485 DLLLARAKMLNVDLTPIKEYVDSFRLGAWPHGGFGVGLERVVMLYLGLSNVRLASLFPRD 544
Query: 455 P 455
P
Sbjct: 545 P 545
|
Length = 550 |
| >gnl|CDD|239766 cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 1e-15
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ +AGWV + R + FI++ DGS +Q V+ + G ++ + T + + + G
Sbjct: 2 VTLAGWVHSRRDHGGLIFIDLRDGS--GIVQVVVNKEELGEFFEEAEKLRTESVVGVTGT 59
Query: 92 VVPSQG---SKQKVELKVNKIVLVGK 114
VV + ++EL+ ++ ++ K
Sbjct: 60 VVKRPEGNLATGEIELQAEELEVLSK 85
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like AspRSs which are non-discriminating and can charge both tRNAAsp and tRNAAsn. E. coli cells have two isoforms of LysRSs (LysS and LysU) encoded by two distinct genes, which are differentially regulated. The cytoplasmic and the mitochondrial isoforms of human LysRS are encoded by a single gene. Yeast cytoplasmic and mitochondrial LysRSs participate in mitochondrial import of cytoplasmic tRNAlysCUU. In addition to their housekeeping role, human LysRS may function as a signaling molecule that activates immune cells. Tomato LysRS may participate in a process possibly connected to conditions of oxidative-stress conditions or heavy metal uptake. It is known that human tRNAlys and LysRS are specifically packaged into HIV-1 suggesting a role for LysRS in tRNA packaging. AsnRS is immunodominant antigen of the filarial nematode Brugia malayai and is of interest as a target for anti-parasitic drug design. Human AsnRS has been shown to be a pro-inflammatory chemokine which interacts with CCR3 chemokine receptors on T cells, immature dendritic cells and macrophages. Length = 85 |
| >gnl|CDD|232998 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 1e-15
Identities = 105/476 (22%), Positives = 178/476 (37%), Gaps = 76/476 (15%)
Query: 22 NEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGL 79
NE L+ + + +AG + R+ TFI + D S +Q + D E + + L
Sbjct: 46 NEELEDKNIEVSIAGRIMARRSMGKATFITLQDES--GQIQLYVNKDDLPEDFYEFDEYL 103
Query: 80 ITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS-----DPSYPI--QKKRVSREFLR 132
+ G I + G P + ++ + V ++ ++ K+ D + + Q+ R + +L
Sbjct: 104 LDLGDIIGVTGY--PFKTKTGELSVHVTELQILTKALRPLPDKFHGLTDQETRYRQRYLD 161
Query: 133 TKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTL 192
+ R TF VR+ + A +F + GFI + +P++ GA
Sbjct: 162 LIVNPDSR-QTF----LVRSKIIKAIRRFLDDRGFIEVETPMLQ-VIPGGANA------- 208
Query: 193 DFFEKPAFLTVSGQLNAETY---ATAL----------SNVYTFGPTFRAENSNTSRHLAE 239
+P F+T L+ + Y A L VY G FR E +T H E
Sbjct: 209 ----RP-FITHHNALDMDLYLRIAPELYLKRLIVGGFEKVYEIGRNFRNEGVDT-THNPE 262
Query: 240 FWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK-----EDMDFFNTWIEKGIIDRLS 294
F MIE A+AD +D M +++ + +L K ++DF + +++ +
Sbjct: 263 FTMIEFYQAYADYEDLMDLTENLFKFLAQELLGTTKITYGELEIDFKKPFKRITMVEAIK 322
Query: 295 TVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGC-------P 347
+ E KK V L H + E F P
Sbjct: 323 KYDMETGIDFDDLKDFETAKALAKKIGIEVA-EKSLTLGH---ILNELFEQFLEHTLIQP 378
Query: 348 VIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGG--------SQREERLEYLEG 399
++ YP EI ++N L E+ QRE + +
Sbjct: 379 TFITHYPAEISPL-AKRNPSNPEFTDRFELFIAGKEIANAFSELNDPLDQRERFEQQVAE 437
Query: 400 RL---DELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 452
+ DE + + + L+ YG P G G+G +RLV T ++IRD I FP
Sbjct: 438 KEAGDDEAQFVDEDFVEALE---YGMPPTGGLGIGIDRLVMLLTDSKSIRDVILFP 490
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms [Protein synthesis, tRNA aminoacylation]. Length = 496 |
| >gnl|CDD|224111 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 3e-15
Identities = 107/486 (22%), Positives = 190/486 (39%), Gaps = 96/486 (19%)
Query: 21 PNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQVKS 77
E L+ + + + VAG + T+R +F ++ DGS +Q + D G ++ +
Sbjct: 53 TKEELEALNIEVSVAGRIMTIRNMGKASFADLQDGS--GKIQLYVNKDEVGEEVFEALFK 110
Query: 78 GLITTGASIWIQGNVVPSQGSKQKVEL--KVNKIVLVGKS-DP------SYPIQKKRVSR 128
+ G I ++G + + EL V ++ L+ KS P ++ R +
Sbjct: 111 -KLDLGDIIGVEGPL----FKTKTGELSVSVEELRLLSKSLRPLPEKFHGLTDKEIRYRQ 165
Query: 129 EFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPI---ITASDCEGAGE 185
+L + R TF +++ A+ +F + GF+ + +P+ I GA
Sbjct: 166 RYLDLIVNPESR-QTFIKRSKIIRAI----REFLDDRGFLEVETPMLQPIPG----GAAA 216
Query: 186 QFCVTTLDFFEKPAFLTVSGQLNAETYATALS--------NVYTFGPTFRAENSNTSRHL 237
+ +T + + +L ++ +L L V+ G FR E +T H
Sbjct: 217 RPFITHHNALDMDLYLRIAPEL-------YLKRLIVGGFERVFEIGRNFRNEGIDT-THN 268
Query: 238 AEFWMIEPELAFADLKDDMACATAYLQYVVR-----YILDNCKEDMDFFNTWIEKGIIDR 292
EF M+E A+AD +D M ++ + + + +++DF + ++D
Sbjct: 269 PEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTTKVTYGGQEIDFSKPFKRITMVDA 328
Query: 293 LSTVAERDFVQLSYTD--AIELLIKAKKKFEFLVKWGC----DLQSEHERYLTEEAFGGC 346
L DF L + D A EL K + E WG + E L E
Sbjct: 329 LKEYLGVDFDDL-FDDEEAKELAKKHGIEVEKYGTWGLGHLLNELFEE---LVEAKLIQ- 383
Query: 347 PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGE----LIGGSQRE----------- 391
P V+D+P EI +++ P + E IGG +E
Sbjct: 384 PTFVTDHPVEISPL-AKRHRSN----------PGLTERFELFIGG--KEIANAYSELNDP 430
Query: 392 -ERLEYLEGRLDELKLNRDSY----WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIR 446
++ E E +++E + D +++ YG P G G+G +RLV T +IR
Sbjct: 431 VDQRERFEAQVEEKEAGDDEAMELDEDFVEALEYGMPPTGGLGIGIDRLVMLLTNSPSIR 490
Query: 447 DAIPFP 452
D I FP
Sbjct: 491 DVILFP 496
|
Length = 502 |
| >gnl|CDD|238400 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 2e-13
Identities = 85/328 (25%), Positives = 132/328 (40%), Gaps = 73/328 (22%)
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTL----DFFEKPA----- 199
R+R+ + A F E GF+ I +PI+T S EGA + F V + F+ P
Sbjct: 2 RLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGARD-FLVPSRLHPGKFYALPQSPQLF 60
Query: 200 --FLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMA 257
L VSG + Y + FR E+ R EF I+ E++F D +D M+
Sbjct: 61 KQLLMVSG---FDRY-------FQIARCFRDEDLRADRQ-PEFTQIDIEMSFVDQEDIMS 109
Query: 258 CATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK 317
L+YV + + + F +++Y +A+E +
Sbjct: 110 LIEGLLKYVFK----------EVLGVELTT------------PFPRMTYAEAME-----R 142
Query: 318 KKFEFLVKWGCD-----LQSEHERYL-TEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTV 371
F+FL W D E R + F + +++ D
Sbjct: 143 YGFKFL--WIVDFPLFEWDEEEGRLVSAHHPF------TAPKEEDLDLLE---KDPEDAR 191
Query: 372 A-AMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYW----WYLDLRHYGSVPHA 426
A A D+++ + EL GGS R + E + L L+ + + L+ YG+ PH
Sbjct: 192 AQAYDLVLNGV-ELGGGSIRIHDPDIQEKVFEILGLSEEEAEEKFGFLLEAFKYGAPPHG 250
Query: 427 GFGLGFERLVQFATGVENIRDAIPFPRT 454
G LG +RLV TG E+IRD I FP+T
Sbjct: 251 GIALGLDRLVMLLTGSESIRDVIAFPKT 278
|
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. Length = 280 |
| >gnl|CDD|171504 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 62.4 bits (151), Expect = 2e-10
Identities = 102/469 (21%), Positives = 184/469 (39%), Gaps = 65/469 (13%)
Query: 22 NEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGL 79
N+ L+ + + + VAG + T R +F+ + D + S EG DQ K
Sbjct: 58 NQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKK-- 115
Query: 80 ITTGASIWIQGNVVPSQGS---KQKVELKVN--KIVLVGKSDPSYPI-------QKKRVS 127
W G+++ ++G+ Q EL ++ ++ L+ K+ P Q+ R
Sbjct: 116 -------WDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYR 168
Query: 128 REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQF 187
+ +L A+ + R TF VR+ + A +F GF+ + +P++ + F
Sbjct: 169 QRYLDLIANDKSR-QTF----VVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPF 223
Query: 188 CVTTLDFFEKPAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPE 246
+T + + +L ++ +L + V+ FR E + RH EF M+E
Sbjct: 224 -ITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISV-RHNPEFTMMELY 281
Query: 247 LAFADLKDDMACATAYLQYVVRYILDNCK-----EDMDF---FNTWIEKGIIDRLSTVAE 298
+A+AD D + + + + + +L K DF F + I + E
Sbjct: 282 MAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYR--PE 339
Query: 299 RDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE------EAFGGCPVIVSD 352
D L DA + L ++ WG R +TE EA P +++
Sbjct: 340 TDMADLDNFDAAKALAES-IGITVEKSWGLG------RIVTEIFDEVAEAHLIQPTFITE 392
Query: 353 YPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGG-----SQREERLEYLEGRLDELKLN 407
YP E+ R + + + + G IG + E++ E + +++
Sbjct: 393 YPAEVSPLARRNDVNPEITDRFEFFIG--GREIGNGFSELNDAEDQAERFQEQVNAKAAG 450
Query: 408 RDSYWW----YLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 452
D + Y+ YG P AG G+G +R++ T IRD I FP
Sbjct: 451 DDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFP 499
|
Length = 505 |
| >gnl|CDD|238398 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 1e-09
Identities = 67/269 (24%), Positives = 93/269 (34%), Gaps = 57/269 (21%)
Query: 219 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKED- 277
VY G FR E + H EF MIE A+AD D M +V+ I K +
Sbjct: 79 VYEIGRNFRNEGIDL-THNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGKTKIEY 137
Query: 278 ----MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 333
+DF + ++D L DF +L EL K L+K +
Sbjct: 138 GGKELDFTPPFKRVTMVDALKEKTGIDFPELDLEQPEELA----KLLAKLIKEKIEKPRT 193
Query: 334 HERYLTEEAFGGC-------PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIG 386
+ L ++ F P + D+P EI R + L R I
Sbjct: 194 LGKLL-DKLFEEFVEPTLIQPTFIIDHPVEISPLAKRHRSNPG-------LTERFELFIC 245
Query: 387 GS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLDLRHYGSV 423
G QRE E + + +DE D ++ YG
Sbjct: 246 GKEIANAYTELNDPFDQRERFEEQAKQKEAGDDEAMMMDE-----D----FVTALEYGMP 296
Query: 424 PHAGFGLGFERLVQFATGVENIRDAIPFP 452
P G G+G +RLV T +IRD I FP
Sbjct: 297 PTGGLGIGIDRLVMLLTDSNSIRDVILFP 325
|
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Length = 329 |
| >gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 9e-09
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 383 ELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGFGLGFERLVQF 438
EL GGS R E + + L ++ R+ + + L+ YG+ PHAGF LG +RL+
Sbjct: 478 ELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYGTPPHAGFALGLDRLMML 537
Query: 439 ATGVENIRDAIPFPRT 454
TG +NIRD I FP+T
Sbjct: 538 LTGTDNIRDVIAFPKT 553
|
Asparate--tRNA ligases in this family may be discriminating (6.1.1.12) or nondiscriminating (6.1.1.23). In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences [Protein synthesis, tRNA aminoacylation]. Length = 583 |
| >gnl|CDD|234778 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 1e-08
Identities = 68/275 (24%), Positives = 102/275 (37%), Gaps = 73/275 (26%)
Query: 219 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 275
VY G FR E +T RH EF M+E A+AD D M ++++ + +L K
Sbjct: 243 VYEIGRNFRNEGIDT-RHNPEFTMLEFYQAYADYNDMMDLTEELIRHLAQAVLGTTKVTY 301
Query: 276 --EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 333
++DF + ++D + DF ++ +A L + + E G
Sbjct: 302 QGTEIDFGPPFKRLTMVDAIKEYTGVDFDDMTDEEARALAKELGIEVEKSWGLG------ 355
Query: 334 HERYLTEEAFGGC-------PVIVSDYPKEIK--AFYMRQNDDGRTVAAMDMLVPRIGE- 383
L E F P ++DYP EI A +++ + P + E
Sbjct: 356 ---KLINELFEEFVEPKLIQPTFITDYPVEISPLA---KRHRE----------DPGLTER 399
Query: 384 ---LIGGS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLDL 417
IGG QRE +E + +DE D +L
Sbjct: 400 FELFIGGREIANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFMDE-----D----FLRA 450
Query: 418 RHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 452
YG P G G+G +RLV T +IRD I FP
Sbjct: 451 LEYGMPPTGGLGIGIDRLVMLLTDSPSIRDVILFP 485
|
Length = 491 |
| >gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 6e-08
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 420 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 454
YG+ PH G G +RLV TG E+IRD I FP+T
Sbjct: 522 YGAPPHGGIAFGLDRLVMLLTGAESIRDVIAFPKT 556
|
Length = 585 |
| >gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 62/252 (24%), Positives = 107/252 (42%), Gaps = 19/252 (7%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
+G + +AGWV R + FI++ D S + +Q V DA+ K + +
Sbjct: 14 LGQTVTLAGWVNRRRDLGGLIFIDLRDRSGI--VQVVCDPDADALKLAKG--LRNEDVVQ 69
Query: 88 IQGNVVP-SQGSKQ------KVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTK-AHLRP 139
++G V +G+ ++E+ I L+ KS I +K + E +R K +L
Sbjct: 70 VKGKVSARPEGNINRNLDTGEIEILAESITLLNKSKTPPLIIEKTDAEEEVRLKYRYLDL 129
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPA 199
R ++R+ + A F + GF+ I +P++T S EGA + + V + K
Sbjct: 130 RRPEMQQRLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTPEGARD-YLVPSR--VHKGE 186
Query: 200 F--LTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDM 256
F L S QL + + + Y FR E+ R EF I+ E++F +D M
Sbjct: 187 FYALPQSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQ-PEFTQIDMEMSFMTQEDVM 245
Query: 257 ACATAYLQYVVR 268
+ +V
Sbjct: 246 ELIEKLVSHVFL 257
|
Asparate--tRNA ligases in this family may be discriminating (6.1.1.12) or nondiscriminating (6.1.1.23). In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences [Protein synthesis, tRNA aminoacylation]. Length = 583 |
| >gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 4e-07
Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 9/111 (8%)
Query: 150 VRNALAYATHKFFQENGFIWISSPIIT-ASDCEGAGEQFCVTT-------LDFFEKPAFL 201
+R+ + +F E GF + +PI+ E AG + D + +P
Sbjct: 1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLE 60
Query: 202 TVSGQLNAETYATALSNVYTFGPTFRAENSNTS-RHLAEFWMIEPELAFAD 251
+L + GP FR E R + EF +E E+ D
Sbjct: 61 PGLVRLFVSHIRKLPLRLAEIGPAFRNEGGRRGLRRVREFTQLEGEVFGED 111
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. Length = 211 |
| >gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 51.2 bits (124), Expect = 6e-07
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 420 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 454
YG+ PH G G +RLV G ++IRD I FP+T
Sbjct: 524 YGAPPHGGIAFGLDRLVMLLAGADSIRDVIAFPKT 558
|
Length = 588 |
| >gnl|CDD|239818 cd04323, AsnRS_cyto_like_N, AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-06
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ V GWV LR+Q + F+ + DG+ +QCV++ L T +S+ + G
Sbjct: 2 VKVFGWVHRLRSQKKLMFLVLRDGTGF--LQCVLSKKLVTEFYDAKSL-TQESSVEVTGE 58
Query: 92 VVPSQGSKQK---VELKVNKIVLVGK 114
V +KQ EL+V+ + ++G+
Sbjct: 59 VKEDPRAKQAPGGYELQVDYLEIIGE 84
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with mitochondrial protein synthesis. AsnRS is immunodominant antigen of the filarial nematode B. malayai and of interest as a target for anti-parasitic drug design. Human AsnRS has been shown to be a pro-inflammatory chemokine which interacts with CCR3 chemokine receptors on T cells, immature dendritic cells and macrophages. Length = 84 |
| >gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 373 AMDMLVPRIGELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGF 428
A DM V E+ GGS R R + + L+ + L+ + + L+ G+ PH G
Sbjct: 537 AYDM-VYNGVEIGGGSLRIYRRDVQQKVLEAIGLSPEEAESKFGYLLEALDMGAPPHGGI 595
Query: 429 GLGFERLVQFATGVENIRDAIPFPRT 454
G +RLV G ++IRD I FP+T
Sbjct: 596 AYGLDRLVMLLAGAKSIRDVIAFPKT 621
|
Length = 652 |
| >gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 15/167 (8%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGLITTGAS 85
VG + ++GWV R + FI++ D + +Q V + E ++ +
Sbjct: 14 VGQTVTLSGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPEDSPEAFEVASR--LRNEFV 69
Query: 86 IWIQGNVVP-SQGSKQ------KVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTK-AH 136
I + G V +G+ ++E+ +I ++ S + I+ + + E +R K +
Sbjct: 70 IQVTGTVRARPEGTINPNLPTGEIEVLAEEIEVLNASKTLPFQIEDETNASEEIRLKYRY 129
Query: 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
L R ++R+ + A F + GF+ I +PI+T S EGA
Sbjct: 130 LDLRRPEMQKNLKLRSKVTKAIRNFLDDQGFLEIETPILTKSTPEGA 176
|
Length = 585 |
| >gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 76/267 (28%), Positives = 102/267 (38%), Gaps = 52/267 (19%)
Query: 219 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 275
VY G FR E +T RH EF E A+AD D M + +V+ + + K
Sbjct: 300 VYEIGRQFRNEGIST-RHNPEFTTCEFYQAYADYNDMMELTEEMVSGMVKELTGSYKIKY 358
Query: 276 --EDMDFFNTWIEKGIIDRLSTVAERDFVQ-LSYTDAIELLIKAKKKFEFLVKWGCDLQS 332
++DF + +I + DF L +A LI A +KF+ C
Sbjct: 359 HGIEIDFTPPFRRISMISLVEEATGIDFPADLKSDEANAYLIAACEKFDV----KCPPPQ 414
Query: 333 EHERYLTE--EAFG--GC--PVIVSDYPKEIK--AFYMRQNDD----------GRTVA-A 373
R L E E F P V D+P E+ A R GR +A A
Sbjct: 415 TTGRLLNELFEEFLEETLVQPTFVLDHPVEMSPLAKPHRSKPGLTERFELFINGRELANA 474
Query: 374 MDMLVPRIGELIGGSQREERLEYLEGRLDELKLNR--DSYWWYLD------LRHYGSVPH 425
L + QRE R E +++K + D LD L YG P
Sbjct: 475 FSELTDPV------DQRE-RFE------EQVKQHNAGDDEAMALDEDFCTALE-YGLPPT 520
Query: 426 AGFGLGFERLVQFATGVENIRDAIPFP 452
G+GLG +RLV T +IRD I FP
Sbjct: 521 GGWGLGIDRLVMLLTDSASIRDVIAFP 547
|
Length = 553 |
| >gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 3e-04
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 23/170 (13%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + + GWV R + FI++ D + +Q V DAE ++ +S + + I
Sbjct: 16 VGQTVTLCGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPDAEAFEVAES--LRSEYVIQ 71
Query: 88 IQGNVVP-SQGSKQK------VELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAH--- 136
+ G V +G+ +E+ +++ ++ KS +PI + E LR K +
Sbjct: 72 VTGTVRARPEGTVNPNLPTGEIEVLASELEVLNKSKTLPFPIDDEEDVSEELRLK-YRYL 130
Query: 137 -LR-PR-TNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
LR P ++R+ + A F +NGF+ I +PI+T S EGA
Sbjct: 131 DLRRPEMQKNL----KLRSKVTSAIRNFLDDNGFLEIETPILTKSTPEGA 176
|
Length = 588 |
| >gnl|CDD|239815 cd04320, AspRS_cyto_N, AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 8e-04
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 15/102 (14%)
Query: 32 IVVAGWVRTLRAQSS-VTFIEVNDGSCLSNMQCVMTSDAEG-----YDQVKSGLITTGAS 85
+++ V T RAQ + + F+ + +Q V+ + AEG S ++ +
Sbjct: 2 VLIRARVHTSRAQGAKLAFLVLRQQG--YTIQGVLAASAEGVSKQMVKWAGS--LSKESI 57
Query: 86 IWIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPSYPIQ 122
+ ++G V + ++Q VEL + KI +V ++ P Q
Sbjct: 58 VDVEGTVKKPEEPIKSCTQQDVELHIEKIYVVSEAAEPLPFQ 99
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Length = 102 |
| >gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.003
Identities = 58/254 (22%), Positives = 105/254 (41%), Gaps = 42/254 (16%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + + GWV R +TF++V D + + + + E + + +
Sbjct: 71 VGSRVTLCGWVDLHRDMGGLTFLDVRDHTGIVQVVTLPDEFPEAHRTANR--LRNEYVVA 128
Query: 88 IQGNVVPSQGSKQ--------KVELKVNKI-VL--VGKSDPSYPI----QKKRVSREFLR 132
++G V S+ + VE+ + +L V KS P + + ++K +E +R
Sbjct: 129 VEG-TVRSRPQESPNKKMKTGSVEVVAESVDILNVVTKSLP-FLVTTADEQKDSIKEEVR 186
Query: 133 TK-AHLRPRTNTFGAVARVRNALAYATHKFFQE-NGFIWISSPIITASDCEGAGEQFCVT 190
+ L R A R+R+ + ++ ++ +GF+ I +PI++ S EGA + +
Sbjct: 187 LRYRVLDLRRPQMNANLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDYLVPS 246
Query: 191 TL---DFFEKP-------AFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEF 240
+ F+ P L VSG + Y Y FR E+ R EF
Sbjct: 247 RVQPGTFYALPQSPQLFKQMLMVSG---FDRY-------YQIARCFRDEDLRADRQ-PEF 295
Query: 241 WMIEPELAFADLKD 254
++ ELAF L+D
Sbjct: 296 TQLDMELAFTPLED 309
|
Length = 652 |
| >gnl|CDD|239814 cd04319, PhAsnRS_like_N, PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS) | Back alignment and domain information |
|---|
Score = 36.3 bits (84), Expect = 0.004
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIWIQ 89
+ +AGWV R FI + D + + +Q V + D E Y + K + +S+ ++
Sbjct: 2 VTLAGWVYRKREVGKKAFIVLRDSTGI--VQAVFSKDLNEEAYREAKK--VGIESSVIVE 57
Query: 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHL 137
G V + E+ K+ ++ + +PI + S EFL HL
Sbjct: 58 GAVKADPRAPGGAEVHGEKLEIIQNVEF-FPITED-ASDEFLLDVRHL 103
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Length = 103 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 460 | |||
| PLN02603 | 565 | asparaginyl-tRNA synthetase | 100.0 | |
| COG0017 | 435 | AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl | 100.0 | |
| PTZ00425 | 586 | asparagine-tRNA ligase; Provisional | 100.0 | |
| PLN02221 | 572 | asparaginyl-tRNA synthetase | 100.0 | |
| TIGR00457 | 453 | asnS asparaginyl-tRNA synthetase. In a multiple se | 100.0 | |
| PRK03932 | 450 | asnC asparaginyl-tRNA synthetase; Validated | 100.0 | |
| PLN02532 | 633 | asparagine-tRNA synthetase | 100.0 | |
| TIGR00458 | 428 | aspS_arch aspartyl-tRNA synthetase, archaeal type. | 100.0 | |
| PRK05159 | 437 | aspC aspartyl-tRNA synthetase; Provisional | 100.0 | |
| KOG0554 | 446 | consensus Asparaginyl-tRNA synthetase (mitochondri | 100.0 | |
| PTZ00401 | 550 | aspartyl-tRNA synthetase; Provisional | 100.0 | |
| PLN02850 | 530 | aspartate-tRNA ligase | 100.0 | |
| PLN02502 | 553 | lysyl-tRNA synthetase | 100.0 | |
| TIGR00499 | 496 | lysS_bact lysyl-tRNA synthetase, eukaryotic and no | 100.0 | |
| PRK00484 | 491 | lysS lysyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK12445 | 505 | lysyl-tRNA synthetase; Reviewed | 100.0 | |
| COG0173 | 585 | AspS Aspartyl-tRNA synthetase [Translation, riboso | 100.0 | |
| PTZ00417 | 585 | lysine-tRNA ligase; Provisional | 100.0 | |
| COG1190 | 502 | LysU Lysyl-tRNA synthetase (class II) [Translation | 100.0 | |
| PTZ00385 | 659 | lysyl-tRNA synthetase; Provisional | 100.0 | |
| TIGR00459 | 583 | aspS_bact aspartyl-tRNA synthetase, bacterial type | 100.0 | |
| PRK02983 | 1094 | lysS lysyl-tRNA synthetase; Provisional | 100.0 | |
| PLN02903 | 652 | aminoacyl-tRNA ligase | 100.0 | |
| KOG0556 | 533 | consensus Aspartyl-tRNA synthetase [Translation, r | 100.0 | |
| KOG1885 | 560 | consensus Lysyl-tRNA synthetase (class II) [Transl | 100.0 | |
| PRK00476 | 588 | aspS aspartyl-tRNA synthetase; Validated | 100.0 | |
| PRK12820 | 706 | bifunctional aspartyl-tRNA synthetase/aspartyl/glu | 100.0 | |
| KOG0555 | 545 | consensus Asparaginyl-tRNA synthetase [Translation | 100.0 | |
| cd00776 | 322 | AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class | 100.0 | |
| PRK06462 | 335 | asparagine synthetase A; Reviewed | 100.0 | |
| KOG2411 | 628 | consensus Aspartyl-tRNA synthetase, mitochondrial | 100.0 | |
| PF00152 | 335 | tRNA-synt_2: tRNA synthetases class II (D, K and N | 100.0 | |
| cd00775 | 329 | LysRS_core Lys_tRNA synthetase (LysRS) class II co | 100.0 | |
| cd00669 | 269 | Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl | 100.0 | |
| TIGR00462 | 304 | genX lysyl-tRNA synthetase-like protein GenX. Many | 100.0 | |
| cd00777 | 280 | AspRS_core Asp tRNA synthetase (aspRS) class II co | 100.0 | |
| PRK09350 | 306 | poxB regulator PoxA; Provisional | 100.0 | |
| COG2269 | 322 | Truncated, possibly inactive, lysyl-tRNA synthetas | 100.0 | |
| cd04317 | 135 | EcAspRS_like_N EcAspRS_like_N: N-terminal, anticod | 99.86 | |
| cd04319 | 103 | PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticod | 99.82 | |
| cd04316 | 108 | ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, a | 99.8 | |
| cd04322 | 108 | LysRS_N LysRS_N: N-terminal, anticodon recognition | 99.79 | |
| cd00645 | 309 | AsnA Asparagine synthetase (aspartate-ammonia liga | 99.77 | |
| PTZ00213 | 348 | asparagine synthetase A; Provisional | 99.75 | |
| PRK05425 | 327 | asparagine synthetase AsnA; Provisional | 99.74 | |
| cd04318 | 82 | EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticod | 99.72 | |
| cd04320 | 102 | AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon r | 99.71 | |
| TIGR00669 | 330 | asnA aspartate--ammonia ligase, AsnA-type. The fac | 99.71 | |
| cd04321 | 86 | ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, a | 99.7 | |
| cd04323 | 84 | AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, a | 99.68 | |
| cd04100 | 85 | Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, ant | 99.65 | |
| PRK09537 | 417 | pylS pyrolysyl-tRNA synthetase; Reviewed | 99.57 | |
| PF01409 | 247 | tRNA-synt_2d: tRNA synthetases class II core domai | 99.56 | |
| COG0016 | 335 | PheS Phenylalanyl-tRNA synthetase alpha subunit [T | 99.52 | |
| PRK00488 | 339 | pheS phenylalanyl-tRNA synthetase subunit alpha; V | 99.52 | |
| TIGR02367 | 453 | PylS pyrrolysyl-tRNA synthetase. PylS is the archa | 99.49 | |
| cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl s | 99.42 | |
| PLN02853 | 492 | Probable phenylalanyl-tRNA synthetase alpha chain | 99.42 | |
| PTZ00326 | 494 | phenylalanyl-tRNA synthetase alpha chain; Provisio | 99.39 | |
| PLN02788 | 402 | phenylalanine-tRNA synthetase | 99.24 | |
| COG2502 | 330 | AsnA Asparagine synthetase A [Amino acid transport | 99.21 | |
| TIGR00468 | 294 | pheS phenylalanyl-tRNA synthetase, alpha subunit. | 99.2 | |
| TIGR00469 | 460 | pheS_mito phenylalanyl-tRNA synthetase, mitochondr | 99.1 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 99.05 | |
| cd00773 | 261 | HisRS-like_core Class II Histidinyl-tRNA synthetas | 98.96 | |
| PF01336 | 75 | tRNA_anti-codon: OB-fold nucleic acid binding doma | 98.95 | |
| TIGR00470 | 533 | sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam | 98.77 | |
| cd00496 | 218 | PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe | 98.61 | |
| TIGR00443 | 314 | hisZ_biosyn_reg ATP phosphoribosyltransferase, reg | 98.48 | |
| PF00587 | 173 | tRNA-synt_2b: tRNA synthetase class II core domain | 98.44 | |
| COG0124 | 429 | HisS Histidyl-tRNA synthetase [Translation, riboso | 98.22 | |
| TIGR00442 | 397 | hisS histidyl-tRNA synthetase. This model finds a | 98.14 | |
| cd00670 | 235 | Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t | 98.14 | |
| cd00778 | 261 | ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) | 98.12 | |
| cd00772 | 264 | ProRS_core Prolyl-tRNA synthetase (ProRS) class II | 98.09 | |
| cd00779 | 255 | ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla | 98.08 | |
| TIGR00409 | 568 | proS_fam_II prolyl-tRNA synthetase, family II. Pro | 98.02 | |
| PRK00037 | 412 | hisS histidyl-tRNA synthetase; Reviewed | 97.97 | |
| cd00771 | 298 | ThrRS_core Threonyl-tRNA synthetase (ThrRS) class | 97.93 | |
| PRK09194 | 565 | prolyl-tRNA synthetase; Provisional | 97.9 | |
| cd00774 | 254 | GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik | 97.89 | |
| KOG2783 | 436 | consensus Phenylalanyl-tRNA synthetase [Translatio | 97.77 | |
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 97.75 | |
| TIGR00414 | 418 | serS seryl-tRNA synthetase. This model represents | 97.74 | |
| PRK05431 | 425 | seryl-tRNA synthetase; Provisional | 97.73 | |
| KOG2784 | 483 | consensus Phenylalanyl-tRNA synthetase, beta subun | 97.72 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 97.66 | |
| PRK12293 | 281 | hisZ ATP phosphoribosyltransferase regulatory subu | 97.66 | |
| cd00770 | 297 | SerRS_core Seryl-tRNA synthetase (SerRS) class II | 97.65 | |
| PRK12305 | 575 | thrS threonyl-tRNA synthetase; Reviewed | 97.61 | |
| TIGR00418 | 563 | thrS threonyl-tRNA synthetase. This model represen | 97.59 | |
| CHL00201 | 430 | syh histidine-tRNA synthetase; Provisional | 97.57 | |
| TIGR00408 | 472 | proS_fam_I prolyl-tRNA synthetase, family I. Proly | 97.56 | |
| PRK12325 | 439 | prolyl-tRNA synthetase; Provisional | 97.55 | |
| PF13393 | 311 | tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI | 97.54 | |
| PRK12292 | 391 | hisZ ATP phosphoribosyltransferase regulatory subu | 97.54 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 97.52 | |
| PRK14799 | 545 | thrS threonyl-tRNA synthetase; Provisional | 97.51 | |
| PLN02972 | 763 | Histidyl-tRNA synthetase | 97.46 | |
| PRK08661 | 477 | prolyl-tRNA synthetase; Provisional | 97.45 | |
| PLN02530 | 487 | histidine-tRNA ligase | 97.42 | |
| PRK03991 | 613 | threonyl-tRNA synthetase; Validated | 97.4 | |
| PRK12421 | 392 | ATP phosphoribosyltransferase regulatory subunit; | 97.35 | |
| PLN02837 | 614 | threonine-tRNA ligase | 97.34 | |
| PRK12420 | 423 | histidyl-tRNA synthetase; Provisional | 97.32 | |
| PLN02678 | 448 | seryl-tRNA synthetase | 97.12 | |
| PRK04173 | 456 | glycyl-tRNA synthetase; Provisional | 97.06 | |
| PRK12295 | 373 | hisZ ATP phosphoribosyltransferase regulatory subu | 97.03 | |
| cd04487 | 73 | RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB f | 97.0 | |
| cd04489 | 78 | ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol | 96.98 | |
| cd04478 | 95 | RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor | 96.72 | |
| PF03590 | 244 | AsnA: Aspartate-ammonia ligase; InterPro: IPR00461 | 96.55 | |
| PLN02320 | 502 | seryl-tRNA synthetase | 96.4 | |
| PF13742 | 99 | tRNA_anti_2: OB-fold nucleic acid binding domain | 96.34 | |
| COG0172 | 429 | SerS Seryl-tRNA synthetase [Translation, ribosomal | 96.26 | |
| cd04483 | 92 | hOBFC1_like hOBFC1_like: A subfamily of OB folds s | 96.2 | |
| PRK12294 | 272 | hisZ ATP phosphoribosyltransferase regulatory subu | 96.19 | |
| COG0442 | 500 | ProS Prolyl-tRNA synthetase [Translation, ribosoma | 96.14 | |
| TIGR00415 | 520 | serS_MJ seryl-tRNA synthetase, Methanococcus janna | 96.12 | |
| COG0423 | 558 | GRS1 Glycyl-tRNA synthetase (class II) [Translatio | 96.1 | |
| cd04482 | 91 | RPA2_OBF_like RPA2_OBF_like: A subgroup of unchara | 96.1 | |
| PRK00960 | 517 | seryl-tRNA synthetase; Provisional | 96.07 | |
| PF10451 | 256 | Stn1: Telomere regulation protein Stn1; InterPro: | 95.54 | |
| COG1107 | 715 | Archaea-specific RecJ-like exonuclease, contains D | 95.52 | |
| PF04076 | 103 | BOF: Bacterial OB fold (BOF) protein; InterPro: IP | 95.39 | |
| cd04490 | 79 | PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds | 95.38 | |
| cd03524 | 75 | RPA2_OBF_family RPA2_OBF_family: A family of oligo | 95.19 | |
| COG3111 | 128 | Periplasmic protein with OB-fold [Function unknown | 95.17 | |
| PRK09616 | 552 | pheT phenylalanyl-tRNA synthetase subunit beta; Re | 94.96 | |
| PRK07373 | 449 | DNA polymerase III subunit alpha; Reviewed | 94.86 | |
| COG0441 | 589 | ThrS Threonyl-tRNA synthetase [Translation, riboso | 94.77 | |
| COG5235 | 258 | RFA2 Single-stranded DNA-binding replication prote | 94.76 | |
| cd04492 | 83 | YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol | 94.53 | |
| TIGR00156 | 126 | conserved hypothetical protein TIGR00156. As of th | 94.51 | |
| PF12869 | 144 | tRNA_anti-like: tRNA_anti-like; InterPro: IPR02442 | 94.47 | |
| cd04485 | 84 | DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp | 94.45 | |
| TIGR00389 | 551 | glyS_dimeric glycyl-tRNA synthetase, dimeric type. | 94.42 | |
| KOG2324 | 457 | consensus Prolyl-tRNA synthetase [Translation, rib | 94.01 | |
| PRK14894 | 539 | glycyl-tRNA synthetase; Provisional | 93.91 | |
| PRK14699 | 484 | replication factor A; Provisional | 93.41 | |
| PRK10053 | 130 | hypothetical protein; Provisional | 93.3 | |
| PRK05672 | 1046 | dnaE2 error-prone DNA polymerase; Validated | 93.26 | |
| PRK15491 | 374 | replication factor A; Provisional | 93.18 | |
| PRK07374 | 1170 | dnaE DNA polymerase III subunit alpha; Validated | 93.0 | |
| cd04479 | 101 | RPA3 RPA3: A subfamily of OB folds similar to huma | 92.47 | |
| PF08661 | 109 | Rep_fac-A_3: Replication factor A protein 3; Inter | 92.15 | |
| PRK06826 | 1151 | dnaE DNA polymerase III DnaE; Reviewed | 92.12 | |
| KOG1936 | 518 | consensus Histidyl-tRNA synthetase [Translation, r | 91.99 | |
| cd00769 | 198 | PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR | 91.98 | |
| PRK05673 | 1135 | dnaE DNA polymerase III subunit alpha; Validated | 91.97 | |
| COG4085 | 204 | Predicted RNA-binding protein, contains TRAM domai | 91.97 | |
| PRK06920 | 1107 | dnaE DNA polymerase III DnaE; Reviewed | 91.22 | |
| PF03100 | 131 | CcmE: CcmE; InterPro: IPR004329 CcmE is the produc | 91.15 | |
| COG3705 | 390 | HisZ ATP phosphoribosyltransferase involved in his | 91.09 | |
| PRK06461 | 129 | single-stranded DNA-binding protein; Reviewed | 90.66 | |
| COG2024 | 536 | Phenylalanyl-tRNA synthetase alpha subunit (archae | 89.34 | |
| KOG2509 | 455 | consensus Seryl-tRNA synthetase [Translation, ribo | 88.9 | |
| PRK07279 | 1034 | dnaE DNA polymerase III DnaE; Reviewed | 88.45 | |
| PRK13480 | 314 | 3'-5' exoribonuclease YhaM; Provisional | 88.36 | |
| cd04474 | 104 | RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds cor | 86.99 | |
| cd04491 | 82 | SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil | 85.7 | |
| PRK07211 | 485 | replication factor A; Reviewed | 85.22 | |
| cd04488 | 75 | RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB f | 84.95 | |
| COG1570 | 440 | XseA Exonuclease VII, large subunit [DNA replicati | 84.76 | |
| COG1571 | 421 | Predicted DNA-binding protein containing a Zn-ribb | 84.55 | |
| PRK07217 | 311 | replication factor A; Reviewed | 84.28 | |
| PRK14699 | 484 | replication factor A; Provisional | 84.1 | |
| PRK15491 | 374 | replication factor A; Provisional | 83.84 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 83.49 | |
| PRK12366 | 637 | replication factor A; Reviewed | 83.43 | |
| PRK00286 | 438 | xseA exodeoxyribonuclease VII large subunit; Revie | 83.42 | |
| cd04484 | 82 | polC_OBF polC_OBF: A subfamily of OB folds corresp | 82.93 | |
| TIGR00237 | 432 | xseA exodeoxyribonuclease VII, large subunit. This | 82.65 | |
| KOG1035 | 1351 | consensus eIF-2alpha kinase GCN2 [Translation, rib | 81.4 | |
| PRK07218 | 423 | replication factor A; Provisional | 81.29 | |
| KOG3108 | 265 | consensus Single-stranded DNA-binding replication | 80.56 | |
| cd05694 | 74 | S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp | 80.33 | |
| PRK07459 | 121 | single-stranded DNA-binding protein; Provisional | 80.09 |
| >PLN02603 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-111 Score=882.89 Aligned_cols=457 Identities=88% Similarity=1.391 Sum_probs=422.0
Q ss_pred CCccccceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCC
Q 012612 4 KVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (460)
Q Consensus 4 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g 83 (460)
..+++..+++|+++....+.+.+..|++|+|+|||+++|.+|+++|++|+|+++..+||||++++...++.+..+.|+.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~iR~~g~~~Fi~l~Dgs~~~~lQ~v~~~~~~~~~~l~~~~l~~g 161 (565)
T PLN02603 82 AVGEFRKKLRIADVKGGEDEGLARVGKTLNVMGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTPDAEGYDQVESGLITTG 161 (565)
T ss_pred cccccCCceEhhhcccccccccccCCCEEEEEEEEEEEEeCCCeEEEEEECCCCCEeEEEEEECcHHHHHHHhhcCCCCC
Confidence 35677788999999844333446789999999999999999999999999999877899999877555666542239999
Q ss_pred cEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccccChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhh
Q 012612 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQ 163 (460)
Q Consensus 84 ~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~ 163 (460)
|+|.|+|+|++++.+++.+||.++++++|++|++++|++.+.++.+++|.++|||+|++.+++++++||++++++|+||.
T Consensus 162 s~V~V~G~v~~~~~~~~~~EL~v~~i~vlg~a~~~~Pi~~~~~s~e~lr~~~hLr~Rt~~~~ai~RiRS~i~~air~ff~ 241 (565)
T PLN02603 162 ASVLVQGTVVSSQGGKQKVELKVSKIVVVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQ 241 (565)
T ss_pred CEEEEEEEEEecCCCCccEEEEEeEEEEEECCCCCCCCcccccchhhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888899999999999999877999888899999999999999999999999999999999999999
Q ss_pred hCCceeecCceeecCCCCCCCCceeeec---------------------------cccCCccccccccHHHHHHHHhcCC
Q 012612 164 ENGFIWISSPIITASDCEGAGEQFCVTT---------------------------LDFFEKPAFLTVSGQLNAETYATAL 216 (460)
Q Consensus 164 ~~gF~EV~TPiL~~~~~eg~~~~F~v~~---------------------------~~~~~~~~~L~~Spql~l~l~~~g~ 216 (460)
++||+||+||+|++++|||+++.|.|++ .+||++++||++|||||||++++|+
T Consensus 242 ~~gF~eV~TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~QL~~E~~~~~l 321 (565)
T PLN02603 242 ENGFVWVSSPIITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGETYATAL 321 (565)
T ss_pred HCCCEEEECCeecccCCCccccCceeeeccccccccccccccccccCcccccccchhhhCcceeeccCchHHHHHHHhcc
Confidence 9999999999999999999999998864 2589999999999999999999999
Q ss_pred CceEEEecccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhh
Q 012612 217 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTV 296 (460)
Q Consensus 217 ~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 296 (460)
+|||+||||||||+++|+|||+||||||+||+|+|++|+|+++|++|+++++.+.+++.+++++.+.+.+.++.+.+++.
T Consensus 322 ~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af~dl~d~m~~~E~~l~~~~~~v~~~~~~el~~~~~~~~~~~~~~l~~~ 401 (565)
T PLN02603 322 SDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILENCKEDMEFFNTWIEKGIIDRLSDV 401 (565)
T ss_pred cceEEEecceeCCCCCCccccccceeeeeeeecCCHHHHHHHHHHHHHHHHHHHHcccHhHHHhcCCcccccHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999988887777788888888
Q ss_pred hcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccceeeeec
Q 012612 297 AERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDM 376 (460)
Q Consensus 297 ~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~fDl 376 (460)
++.||++|+|+||+++|++.+.+++...+||.+|+.++|++|.+.++..+|+||+|||.+++||||+.+++++++++|||
T Consensus 402 ~~~~f~rity~EAi~iL~~~~~~~~~~~~~g~dl~~e~Er~L~~~~~~~~PvfVtdyP~~ikpFYm~~~~d~~~v~~fDL 481 (565)
T PLN02603 402 VEKNFVQLSYTDAIELLLKAKKKFEFPVKWGLDLQSEHERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDM 481 (565)
T ss_pred cCCCCCCCCHHHHHHHHHHhccccCCCCCccccccHHHHHHHHHHhccCCCEEEECCccccCccccccCCCCCeeEEEEE
Confidence 88899999999999999988766665678999999999999998776447999999999999999988878889999999
Q ss_pred ccCCceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCC
Q 012612 377 LVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 456 (460)
Q Consensus 377 ~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~ 456 (460)
++||+|||+||++|+|+++++.+++++.|+++++|+|||++++||+|||||||||||||+||+||.+|||||++|||+++
T Consensus 482 l~p~~gEl~gGsqRe~r~e~L~~~~~e~g~~~e~y~wYLdl~r~G~pPhgGfGlG~ERLvm~ltg~~nIRdvi~FPR~~g 561 (565)
T PLN02603 482 LVPRVGELIGGSQREERLEYLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFPRVPG 561 (565)
T ss_pred EecCceEecCHHHHHhhHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCceeEEcHHHHHHHHhCCCchhheeeccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccC
Q 012612 457 SVEF 460 (460)
Q Consensus 457 ~~~~ 460 (460)
+|++
T Consensus 562 ~~~~ 565 (565)
T PLN02603 562 SAEF 565 (565)
T ss_pred CCCC
Confidence 9975
|
|
| >COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-111 Score=847.57 Aligned_cols=428 Identities=47% Similarity=0.792 Sum_probs=394.3
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc---cchhhHhccCCCCCcEE
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASI 86 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V 86 (460)
.+++++|+.+. ..++.|+|+|||+++|++|+++|+.|||++|+ ||||++++. ..++ +++ |+.||+|
T Consensus 3 ~~~~i~di~~~------~~~~~V~v~GWV~~~R~~g~i~Fi~lrDgsg~--iQ~v~~~~~~~~~~~~-~~~--L~~es~v 71 (435)
T COG0017 3 KRTYIKDIKPH------VGGQEVTVRGWVHNKRDLGKIIFLVLRDGSGF--IQAVVPKNKVYEELFK-AKK--LTLESSV 71 (435)
T ss_pred ceeeHHhhhcc------CCCcEEEEEEEeeeecccCCeEEEEEEcCCcE--EEEEEECCCCcHHHhh-hhc--CCCccEE
Confidence 46788899764 33489999999999999999999999999987 999998743 2345 678 9999999
Q ss_pred EEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccccC-hhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhC
Q 012612 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS-REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 165 (460)
Q Consensus 87 ~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~-~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~ 165 (460)
.|+|+|++++.+.|.+||++++|+|++++.+++|++++.++ +++++++|||++|++..+++|++||.+++++|+||.++
T Consensus 72 ~V~G~v~~~~~a~~g~El~v~~i~Vl~~a~~~~Pi~~~~~~~~e~lld~rhL~lR~~~~~Av~kirs~i~~a~~eff~~~ 151 (435)
T COG0017 72 VVTGIVKASPKAPQGFELQVEKIEVLGEADPPYPIDKKEHSELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYEN 151 (435)
T ss_pred EEEEEEEcCCCCCCCEEEEEEEEEEeeccCCCCCcCcccccCHHHHHhchheeccccchHHHHhHHHHHHHHHHHHHHhC
Confidence 99999999999889999999999999999667999999995 99999999999999999999999999999999999999
Q ss_pred CceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHHHHhcCCCceEEEecccccCCCCCCCCCCccceeee
Q 012612 166 GFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEP 245 (460)
Q Consensus 166 gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~ 245 (460)
||+||+||+|+++++||++++|.| +||+.++||+||||||||+++++++|||+|||+||+|+++|+|||.||||+|.
T Consensus 152 gF~eV~tP~i~~~~~EGg~elF~v---~yf~~~a~LtqS~QLyke~~~~al~rVf~igP~FRAE~s~T~RHL~EF~~ld~ 228 (435)
T COG0017 152 GFTEVHTPIITASATEGGGELFKV---DYFDKEAYLTQSPQLYKEALAAALERVFTIGPTFRAEKSNTRRHLSEFWMLDP 228 (435)
T ss_pred CcEEecCceEeccCCCCCceeEEE---eecCcceEEecCHHHHHHHHHHHhCceEEecCceecCCCCCcchhhhHheecc
Confidence 999999999999999999999999 89999999999999999988888999999999999999999999999999999
Q ss_pred eecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHccccccccc
Q 012612 246 ELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVK 325 (460)
Q Consensus 246 e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~ 325 (460)
||+|++++|+|+++|+||+++++.+.++|..++++++. +.. .++.....||+||+|+||+++|++.+.+. ++
T Consensus 229 Emaf~~~~d~m~l~E~~i~~i~~~v~e~~~~el~~l~~--~~~---~l~~~~~~pf~ritY~eAieiL~~~~~e~---~~ 300 (435)
T COG0017 229 EMAFADLNDVMDLAEELIKYLFKKVLEECADELEFLGR--DNS---ELKRPESAPFPRITYKEAIEILEEKGFEK---VE 300 (435)
T ss_pred eeccCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc--cch---hhcccccCCccEEEHHHHHHHHHhcCCcc---cC
Confidence 99999999999999999999999999999988877753 111 12221246899999999999999876542 78
Q ss_pred cccccchhhhcccccccccCccEEEEeCCCcCccccccccCCc-cceeeeecccCCceeeecHHHhhhhHHHHHHHHHHc
Q 012612 326 WGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG-RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL 404 (460)
Q Consensus 326 ~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~-~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~ 404 (460)
||+|+++++|++|.++++. .|+||+|||.+++||||+.++|+ +++.+|||++||+|||+|||||+|+++.|.+++++.
T Consensus 301 ~GdDl~~e~Er~l~e~~~~-~~vfv~~yP~~~kpFYm~~~~d~p~~~~~~Dll~p~~gEIigGsqRe~~~d~L~~ri~~~ 379 (435)
T COG0017 301 WGDDLGTEHERYLGEEYFK-PPVFVTNYPKEIKPFYMRPDPDNPGTVASFDLLAPGGGEIIGGSQREHDYDLLVERIKEK 379 (435)
T ss_pred CCCccCCHHHHHHHHHhCC-CcEEEEeCcccccccccccCCCCCCeEEEEeeecCCceeeecceeccccHHHHHHHHHHc
Confidence 9999999999999988764 57999999999999999988876 799999999999889999999999999999999999
Q ss_pred CCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCccC
Q 012612 405 KLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 460 (460)
Q Consensus 405 ~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~~ 460 (460)
|+++++|+|||++++||+|||||||||+|||+|++||.+||||++||||+++++.+
T Consensus 380 gl~~e~~~wYld~~kyG~~PHaGfGlG~ERlv~~i~gl~nIRea~pFPR~~~r~~p 435 (435)
T COG0017 380 GLDPESYEWYLDLRKYGMPPHAGFGLGLERLVMYILGLDNIREAIPFPRDPGRLYP 435 (435)
T ss_pred CCChHHhHHHHHHHHcCCCCCcccccCHHHHHHHHhCCCcceeccccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999864
|
|
| >PTZ00425 asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-107 Score=852.32 Aligned_cols=432 Identities=53% Similarity=0.962 Sum_probs=394.6
Q ss_pred CCCCCEEEEEEEEeeeccCC--CeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCC-----
Q 012612 26 DRVGLMIVVAGWVRTLRAQS--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGS----- 98 (460)
Q Consensus 26 ~~~~~~V~v~GwV~~~R~~g--~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~----- 98 (460)
++.|+.|+|+|||+++|++| +++|++|||++|...+|||++.+...++.+++ |+.|++|.|+|+|+.++.+
T Consensus 78 ~~~g~~Vtl~GWv~~iR~~g~~~~~Fv~lrDgsg~~~iQiVv~~~~~~~~~l~~--l~~gs~v~v~G~v~~~~~~~~n~~ 155 (586)
T PTZ00425 78 KYIDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQSIENYEKLLK--CGVGCCFRFTGKLIISPVQNENKK 155 (586)
T ss_pred ccCCCEEEEEEEEeehhhcCCceEEEEEEECCCCCcceEEEECCchHHHHHHhc--CCCccEEEEEEEEEcCCccccCcC
Confidence 56799999999999999987 49999999999877899999765445667778 9999999999999987533
Q ss_pred ---CceEEEEE-----eEEEEEecCC-C-CCCCCccccChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhCCce
Q 012612 99 ---KQKVELKV-----NKIVLVGKSD-P-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFI 168 (460)
Q Consensus 99 ---~~~~El~~-----~~i~ils~~~-~-~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~ 168 (460)
++.+||.+ ++++||+++. + .+|++++.++.+++|++||||+|++.++++||+||++..++|+||.++||+
T Consensus 156 g~~~~~~El~~~~~~~~~~~ilg~~~d~~~yPi~~k~~~~e~lr~~rhL~lR~~~~~avlRiRs~l~~a~r~ff~~~gF~ 235 (586)
T PTZ00425 156 GLLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKNHGKEFLREVAHLRPRSYFISSVIRIRNALAIATHLFFQSRGFL 235 (586)
T ss_pred CCCCccEEEEEecCCCceEEEEeccCCCCCCCCCCccCChhhhhhccceeccCHHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 35699998 7999999983 2 489998889999999999999999999999999999999999999999999
Q ss_pred eecCceeecCCCCCCCCceeeecc--------------------------------------------------------
Q 012612 169 WISSPIITASDCEGAGEQFCVTTL-------------------------------------------------------- 192 (460)
Q Consensus 169 EV~TPiL~~~~~eg~~~~F~v~~~-------------------------------------------------------- 192 (460)
||+||+|++++|||+++.|.|++.
T Consensus 236 eI~TPiit~s~~EGa~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~ 315 (586)
T PTZ00425 236 YIHTPLITTSDCEGGGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNANNNNGNSSSSNAVSSPAYPDQYLI 315 (586)
T ss_pred EeeCCeecccCCCCCcceEEeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999998642
Q ss_pred ----ccCCccccccccHHHHHHHHhcCCCceEEEecccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHH
Q 012612 193 ----DFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVR 268 (460)
Q Consensus 193 ----~~~~~~~~L~~Spql~l~l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~ 268 (460)
+||++++||+||||||||++++|++|||+||||||||+++|+||+|||||||+||+|.+++++|+++|++|+++++
T Consensus 316 ~~~~~yF~k~ayL~~S~QLylE~~~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE~E~af~d~~d~m~~~E~li~~v~~ 395 (586)
T PTZ00425 316 DYKKDFFSKQAFLTVSGQLSLENLCSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAFADLYDNMELAESYIKYCIG 395 (586)
T ss_pred cccccccCcceEEEcCchHHHHHHHhccCCEEEEeceEeCCCCCCCCCCcccceEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 6899999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccccccccCccE
Q 012612 269 YILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPV 348 (460)
Q Consensus 269 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~ 348 (460)
.+.+++..++.+.+.....++.+.++..++.||++|||+||+++|++.+..++...+||.++..++|++|.+.++. .|+
T Consensus 396 ~vl~~~~~~i~~~~~~~~~~l~~~l~~~~~~pf~rIty~EAi~iL~~~~~~~~~~~~~G~dL~~e~Er~L~~~~~~-~Pv 474 (586)
T PTZ00425 396 YVLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNVIDLLQPYSDSFEVPVKWGMDLQSEHERFVAEQIFK-KPV 474 (586)
T ss_pred HHhcccccccccccccccccHHHHHHHhcCCCCCcCCHHHHHHHHHHhHHhcCCCCCcccccchHHHHHHHHHhcC-CcE
Confidence 9999888888776543334566677766778999999999999999876544445789999999999999986544 799
Q ss_pred EEEeCCCcCccccccccCCccceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcce
Q 012612 349 IVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGF 428 (460)
Q Consensus 349 ~I~~fP~~~~pf~~~~~~~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~ 428 (460)
||+|||.+++|||++.++++..+++|||++||+|||+|||+|+|+++.+.+++++.|+++++|+|||++++||+||||||
T Consensus 475 FItdyP~~~kPFY~~~~~d~~~v~~fDLlvpgiGEI~gGsqRe~~~e~L~~~ike~gl~~e~~~wYLd~rryG~pPhgGf 554 (586)
T PTZ00425 475 IVYNYPKDLKAFYMKLNEDQKTVAAMDVLVPKIGEVIGGSQREDNLERLDKMIKEKKLNMESYWWYRQLRKFGSHPHAGF 554 (586)
T ss_pred EEECCccccCccccCcCCCCCeEEEEeEEccCceEEccCCCccccHHHHHHHHHHcCCChhHHHHHHHHhhCCCCCCceE
Confidence 99999999999999888777889999999999899999999999999999999999999999999999999999999999
Q ss_pred eccHHHHHHHHcCCCCccccccccCCCCCccC
Q 012612 429 GLGFERLVQFATGVENIRDAIPFPRTPGSVEF 460 (460)
Q Consensus 429 giGidRL~m~l~~~~~Irdv~~FPr~~~~~~~ 460 (460)
|||+|||+||+||.+|||||++|||++++|.|
T Consensus 555 GLGiERLvm~ltGl~nIRDvi~FPR~~g~~~~ 586 (586)
T PTZ00425 555 GLGFERLIMLVTGVDNIKDTIPFPRYPGHAEF 586 (586)
T ss_pred EEcHHHHHHHHcCCCchheEEECcCCCCcCCC
Confidence 99999999999999999999999999999986
|
|
| >PLN02221 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-106 Score=847.79 Aligned_cols=451 Identities=57% Similarity=0.975 Sum_probs=402.3
Q ss_pred CccccceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCC--eEEEEEEcCCCccceEEEEeCCccchhhHhccCCCC
Q 012612 5 VGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSS--VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITT 82 (460)
Q Consensus 5 ~~~~~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~--~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~ 82 (460)
-++|..+.+|++|....+.+.++.|+.|+|+|||+++|.+|| ++|++|||+++.+.||||++++.. ...+. |+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~g~~V~I~GWV~~iR~~Gk~~i~Fl~LRDgs~~g~iQvVv~~~~~--~~~~~--L~~ 101 (572)
T PLN02221 26 KAQFSDRVLIRSILDRPDGGAGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVMVDSSLY--DLSTL--VAT 101 (572)
T ss_pred cccccCceEHHHHhccccCChhcCCCEEEEEEEEEehhhCCCceEEEEEEeCCcccccEEEEEcCchh--hHHhc--CCC
Confidence 345778889999986555566789999999999999999985 899999999965569999986532 22245 999
Q ss_pred CcEEEEEeeEeecCC---CCceEEEEEeEEEEEecCCC-CCCCCccccChhhhhccccccCCChhhhHHHHHHHHHHHHH
Q 012612 83 GASIWIQGNVVPSQG---SKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYAT 158 (460)
Q Consensus 83 g~~V~V~G~v~~~~~---~~~~~El~~~~i~ils~~~~-~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~i 158 (460)
|++|.|+|+|+.++. .++++||.+++|.|||+|.+ ++|++.+.++.+++|+++|||+|++.++++|++||.+.+++
T Consensus 102 ES~V~V~G~V~~~~~~~~~~~~iEl~v~~i~vl~~a~~~~~Pi~~~~~~~e~lrr~~hLR~R~~~~~Ai~RiRS~i~~ai 181 (572)
T PLN02221 102 GTCVTVDGVLKVPPEGKGTKQKIELSVEKVIDVGTVDPTKYPLPKTKLTLEFLRDVLHLRSRTNSISAVARIRNALAFAT 181 (572)
T ss_pred ceEEEEEEEEEeCCccCCCCccEEEEEeEEEEEecCCCCCCCCCCCcCChHHHhhcchhhcCCHHHHHHHHHHHHHHHHH
Confidence 999999999998764 35689999999999999974 59998888899999999999999999999999999999999
Q ss_pred HHhhhhCCceeecCceeecCCCCCCCCceeeecc----------------------------------------------
Q 012612 159 HKFFQENGFIWISSPIITASDCEGAGEQFCVTTL---------------------------------------------- 192 (460)
Q Consensus 159 R~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~---------------------------------------------- 192 (460)
|+||.++||+||+||+|++++|||+++.|.|++.
T Consensus 182 R~ff~~~gFiEI~TP~Lt~s~~EGg~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (572)
T PLN02221 182 HSFFQEHSFLYIHTPIITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAKASK 261 (572)
T ss_pred HHHHHHCCCEEEeCCeeccccCCCCccceeeeecccccccccccccccCcccchhhhhhhhhhhhhcchhhhhhccccch
Confidence 9999999999999999999999999999998431
Q ss_pred -----------------------------------------ccCCccccccccHHHHHHHHhcCCCceEEEecccccCCC
Q 012612 193 -----------------------------------------DFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENS 231 (460)
Q Consensus 193 -----------------------------------------~~~~~~~~L~~Spql~l~l~~~g~~rvfeI~~~FR~E~~ 231 (460)
+|||+++||+||||||||++++|++|||+||||||||++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dyFg~~ayLtqS~QLy~e~~~~~l~rVfeIgP~FRAE~s 341 (572)
T PLN02221 262 EEITAAVAELKIAKESLAHIEERSKLKPGLPKKDGKIDYSKDFFGRQAFLTVSGQLQVETYACALSSVYTFGPTFRAENS 341 (572)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhcccCCcccccccccccccCCCCeeeccCHHHHHHHHHHhcCCeEEEccceecCCC
Confidence 699999999999999999988999999999999999999
Q ss_pred CCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHH
Q 012612 232 NTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIE 311 (460)
Q Consensus 232 ~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~ 311 (460)
+|+||||||||||+||+|.|++|+|+++|+||+++++.+.+++..++++..........+.++...+.||+||+|.||++
T Consensus 342 ~T~RHL~EFtmlE~Emaf~d~~dvm~l~E~lv~~i~~~l~~~~~~~l~~l~~~~~~~~~~~l~~~~~~pf~RIty~EAi~ 421 (572)
T PLN02221 342 HTSRHLAEFWMVEPEIAFADLEDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAIE 421 (572)
T ss_pred CCCcccccccceeeeeecCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCchhhhhhhhccCCCceEEEHHHHHH
Confidence 99999999999999999999999999999999999999998888777665432222344556555678999999999999
Q ss_pred HHHHH---ccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccceeeeecccCCceeeecHH
Q 012612 312 LLIKA---KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGS 388 (460)
Q Consensus 312 ~l~~~---~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~fDl~~~G~~Ei~~g~ 388 (460)
+|++. |.+++...+||.|++.++|++|.+.++. +|+||+|||..++||||+.++++..+++|||+++|+|||++|+
T Consensus 422 ~L~~~~~~g~~~~~~~~~G~dl~~e~Er~L~~~~~~-~pvfv~dyP~~~~pfy~~~~~d~~~~~~fDLl~~g~~El~~g~ 500 (572)
T PLN02221 422 LLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQ-KPLIVYNYPKGIKAFYMRLNDDEKTVAAMDVLVPKVGELIGGS 500 (572)
T ss_pred HHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHhcC-CcEEEEcCChhhCcccccCCCCCceEEEEEEecCCceEECCHH
Confidence 99884 4444434679999999999999886554 8999999999999999877777778899999999999999999
Q ss_pred HhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCccC
Q 012612 389 QREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 460 (460)
Q Consensus 389 ~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~~ 460 (460)
+|+|+++.+.+++++.|+++++++|||++++||+|||||||||+|||+||++|.+|||||++|||++++|..
T Consensus 501 ~R~~r~e~l~~~~~~~g~~~~~~~~yLda~~~G~pPh~G~GlGiERLvm~l~g~~nIRdvi~FPR~~~~~~~ 572 (572)
T PLN02221 501 QREERYDVIKQRIEEMGLPIEPYEWYLDLRRYGTVKHCGFGLGFERMILFATGIDNIRDVIPFPRYPGKADL 572 (572)
T ss_pred HHHHHHHHHHHHHHHcCCChhhhHHHHHHhhCCCCCCceEEEeHHHHHHHHcCCCchheEeecCCCcCcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999863
|
|
| >TIGR00457 asnS asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-106 Score=838.62 Aligned_cols=441 Identities=57% Similarity=0.974 Sum_probs=397.5
Q ss_pred eeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc--cchhhHhccCCCCCcEEEEEe
Q 012612 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIWIQG 90 (460)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~--~~~~~~~~~~l~~g~~V~V~G 90 (460)
+++++... ..++.|++|+|+|||+++|.+|+++|++|||+++.+.||||++++. ..++.++. |+.||+|.|+|
T Consensus 3 ~~~~~~~~---~~~~~g~~v~v~Gwv~~~R~~~~~~F~~lrD~~~~g~iQ~v~~~~~~~~~~~~~~~--l~~gs~V~v~G 77 (453)
T TIGR00457 3 AIKDLLQQ---VYKFVGDEVTVSGWVRTKRSSKKIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKS--LTTGSSVSVTG 77 (453)
T ss_pred cHHHHHhc---chhcCCCEEEEEEEeEEEEcCCCeEEEEEECCCCCccEEEEEeCCcChHHHHHHHc--CCCCcEEEEEE
Confidence 34555542 1246799999999999999999999999999994446999998763 22455677 99999999999
Q ss_pred eEeecCCCCceEEEEEeEEEEEecCC-CCCCCCccccChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhCCcee
Q 012612 91 NVVPSQGSKQKVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIW 169 (460)
Q Consensus 91 ~v~~~~~~~~~~El~~~~i~ils~~~-~~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~E 169 (460)
++++++.+++++||.+++++|||+|. ..+|++.+.+++++++++||||+|++.++++|++||+|++++|+||.++||+|
T Consensus 78 ~v~~~~~~~~~~El~~~~i~vl~~~~~~~~P~~~~~~~~~~~~~~r~l~lR~~~~~~~lr~Rs~i~~~~r~~~~~~gf~e 157 (453)
T TIGR00457 78 KVVESPGKGQPVELQVKKIEVVGEAEPDDYPLQKKEHSLEFLRDIAHLRLRTNTLGAVMRVRNALSQAIHRYFQENGFTW 157 (453)
T ss_pred EEEcCCCCCCCEEEEEeEEEEEecCCccCCCCCccccChhhHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence 99998766789999999999999997 35899988889999999999999999999999999999999999999999999
Q ss_pred ecCceeecCCCCCCCCceeeecc------ccCCccccccccHHHHHHHHhcCCCceEEEecccccCCCCCCCCCCcccee
Q 012612 170 ISSPIITASDCEGAGEQFCVTTL------DFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMI 243 (460)
Q Consensus 170 V~TPiL~~~~~eg~~~~F~v~~~------~~~~~~~~L~~Spql~l~l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~l 243 (460)
|+||+|+++++||++++|.|++. +||++++||+||||+|||++++|++||||||||||||+++++|||||||||
T Consensus 158 V~TP~l~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~yL~~Spql~lq~l~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~l 237 (453)
T TIGR00457 158 VSPPILTSNDCEGAGELFRVSTDGIDFSQDFFGKEAYLTVSGQLYLETYALALSKVYTFGPTFRAEKSNTSRHLSEFWMI 237 (453)
T ss_pred ecCCeEeecCCCCCCCceEecccccccchhccCCccccccCHHHHHHHHhhcccCceEeeeccccCCCCCCcCcchhccc
Confidence 99999999999999999988532 289999999999999999888999999999999999999889999999999
Q ss_pred eeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHccccccc
Q 012612 244 EPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFL 323 (460)
Q Consensus 244 E~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~ 323 (460)
||||+|++++|+|+++|++|+++++.+.+.+..+++..+.....++...+++.++.+|++++|.||+++|++.+..++..
T Consensus 238 e~e~~~~~~~dvm~~~E~lv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rit~~ea~~~l~~~~~~~~~~ 317 (453)
T TIGR00457 238 EPEMAFANLNDLLQLAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINNKFARITYTDAIEILKESDKNFEYE 317 (453)
T ss_pred eeeeecCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHhcCCCCceeEHHHHHHHHHhcCCCCcCC
Confidence 99999999999999999999999999998877666665544444566677778889999999999999999986554445
Q ss_pred cccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccceeeeecccCCceeeecHHHhhhhHHHHHHHHHH
Q 012612 324 VKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE 403 (460)
Q Consensus 324 ~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~ 403 (460)
..||.+|+.++|++|++.++. .|+||+|||.+++|||++.++++++++||||+++|+|||+|||+|+|+++++.+++++
T Consensus 318 ~~~g~~l~~~~e~~L~~~~~~-~p~fIt~~P~~~~pfy~~~~~~~~~~~~fDL~~~g~gEi~~gsere~~~~~l~~~~~~ 396 (453)
T TIGR00457 318 DFWGDDLQTEHERFLAEEYFK-PPVFVTNYPKDIKAFYMKLNDDGKTVAAMDLLAPGIGEIIGGSEREDDLDKLENRMKE 396 (453)
T ss_pred CCCCCCCCcHHHHHHHHHhCC-CCEEEECCCcccChhhcccCCCcCceeeeeeccCCceEEeehhccCCCHHHHHHHHHH
Confidence 679999999999999987665 7999999999999999877767789999999999999999999999999999999999
Q ss_pred cCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCcc
Q 012612 404 LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459 (460)
Q Consensus 404 ~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~ 459 (460)
.|++++.++|||++++||+|||||||||||||+||+||.+|||||++|||++++|.
T Consensus 397 ~g~d~~~~~~Yl~~~~~G~pPhgG~GiGieRlvm~l~g~~~Irdv~~FPr~~~~~~ 452 (453)
T TIGR00457 397 MGLDTDALNWYLDLRKYGSVPHSGFGLGFERLLAYITGLENIRDAIPFPRTPGNIN 452 (453)
T ss_pred cCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999985
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn. |
| >PRK03932 asnC asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-106 Score=834.73 Aligned_cols=439 Identities=62% Similarity=1.066 Sum_probs=400.0
Q ss_pred eeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc--cchhhHhccCCCCCcEEEE
Q 012612 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIWI 88 (460)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~--~~~~~~~~~~l~~g~~V~V 88 (460)
+.+++++... ++.|++|+|+|||+++|.+||++|++|||++|. +|+++..+. ..++.++. |+.||+|.|
T Consensus 3 ~~~~~~~~~~-----~~~~~~V~i~G~v~~~R~~g~~~Fi~lrD~~g~--iq~~~~~~~~~~~~~~~~~--l~~~s~v~v 73 (450)
T PRK03932 3 RVSIKDILKG-----KYVGQEVTVRGWVRTKRDSGKIAFLQLRDGSCF--KQLQVVKDNGEEYFEEIKK--LTTGSSVIV 73 (450)
T ss_pred cEEHHHhccc-----ccCCCEEEEEEEEEEEEeCCCeEEEEEECCCCc--EEEEEEcCCChHHHHHHhc--CCCCcEEEE
Confidence 4568888643 578999999999999999999999999999975 888776542 34667777 999999999
Q ss_pred EeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccccChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhCCce
Q 012612 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFI 168 (460)
Q Consensus 89 ~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~ 168 (460)
+|++.+++++++++||.+++++|||+|...+|++.+.+++++++++||||+|++.++++|++||.|++++|+||.++||+
T Consensus 74 ~G~v~~~~~~~~~~el~~~~i~vl~~~~~~~p~~~~~~~~~~~~~~r~l~lR~~~~~~~l~~Rs~i~~~iR~f~~~~gf~ 153 (450)
T PRK03932 74 TGTVVESPRAGQGYELQATKIEVIGEDPEDYPIQKKRHSIEFLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNENGFV 153 (450)
T ss_pred EEEEEcCCCCCCCEEEEEEEEEEccCCCCCCCCCccccChHHHhhCceeeccCHHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 99999998877899999999999999876799999989999999999999999999999999999999999999999999
Q ss_pred eecCceeecCCCCCCCCceeeecc------ccCCccccccccHHHHHHHHhcCCCceEEEecccccCCCCCCCCCCccce
Q 012612 169 WISSPIITASDCEGAGEQFCVTTL------DFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWM 242 (460)
Q Consensus 169 EV~TPiL~~~~~eg~~~~F~v~~~------~~~~~~~~L~~Spql~l~l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~ 242 (460)
||+||+|+++++||++++|.|++. +||+.++||+||||+|||++++|++|||||+||||||+++++||||||||
T Consensus 154 EV~TP~L~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~lq~l~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~ 233 (450)
T PRK03932 154 WVDTPIITASDCEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAYAMALGKVYTFGPTFRAENSNTRRHLAEFWM 233 (450)
T ss_pred EecCCceeccCCCCCCCceEeecccccccccccCCCcccccCHHHHHHHHHhccCCeEEeeeccccCCCCCccccccccc
Confidence 999999999999999999988543 69999999999999999988899999999999999999999999999999
Q ss_pred eeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHcccccc
Q 012612 243 IEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF 322 (460)
Q Consensus 243 lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~ 322 (460)
||||++|.|++++|+++|+||+++++.+.+++..++++.+.+.+.+..+.++..++.||+++||.||++++++.+.+++.
T Consensus 234 lE~e~~~~~~~~~m~~~e~li~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~rity~eA~~~l~~~~~~~~~ 313 (450)
T PRK03932 234 IEPEMAFADLEDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERLENFIESPFPRITYTEAIEILQKSGKKFEF 313 (450)
T ss_pred cceEEeccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccccCchHHHHHHhhcCCCceEeEHHHHHHHHHHcCCCcCC
Confidence 99999999999999999999999999999888778887776655555555555566799999999999999988776655
Q ss_pred ccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccceeeeecccCCceeeecHHHhhhhHHHHHHHHH
Q 012612 323 LVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD 402 (460)
Q Consensus 323 ~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~ 402 (460)
...||.+++...|++|.++.+. .|+||+|||.+++|||++.++++++++||||++||+|||++|++|+|+++++.++++
T Consensus 314 ~~~~g~~l~~~~e~~l~~~~~~-~pvfI~~yP~~~~pfy~~~~~~~~~~~~fdLl~~g~~El~~g~~r~~~~~~l~~~~~ 392 (450)
T PRK03932 314 PVEWGDDLGSEHERYLAEEHFK-KPVFVTNYPKDIKAFYMRLNPDGKTVAAMDLLAPGIGEIIGGSQREERLDVLEARIK 392 (450)
T ss_pred CCCcccccChHHHHHHHHHhcC-CcEEEECCCcccCcccCcCCCCCCEEEEEEEEcCCCceeCCHHHHhhhHHHHHHHHH
Confidence 5589999999999999885555 799999999999999987766668999999999999999999999999999999999
Q ss_pred HcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCcc
Q 012612 403 ELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459 (460)
Q Consensus 403 ~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~ 459 (460)
+.|+++++++||+++++||||||||||||||||+||+||.+|||||++|||++++|.
T Consensus 393 ~~g~~~~~~~~yl~~~~~G~pP~gG~GiGidRL~m~l~g~~nIrdv~~FPr~~~r~~ 449 (450)
T PRK03932 393 ELGLNKEDYWWYLDLRRYGSVPHSGFGLGFERLVAYITGLDNIRDVIPFPRTPGRAE 449 (450)
T ss_pred HcCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999985
|
|
| >PLN02532 asparagine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-106 Score=845.76 Aligned_cols=450 Identities=47% Similarity=0.877 Sum_probs=408.6
Q ss_pred CccccceeeeccccCCccCCCCCCCCEEEEEEEEeeecc-----------------------------------------
Q 012612 5 VGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA----------------------------------------- 43 (460)
Q Consensus 5 ~~~~~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~----------------------------------------- 43 (460)
..||+.|+.++-|....++|...+|+.|+|.|||++.+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (633)
T PLN02532 23 PSKYSNRVVLKTILGRSDGGAGLVGKRVVVGGWVKSAKEVKKEPAPPPPPQSPSSAGDQSPGHKDVRCTEILQSRVPIFR 102 (633)
T ss_pred chhccceeeeeeecccCCCccccccceEEecceehhhHHhhcCCCCCCCCCCCCCCCCCCCCcCCcchhHHHhhhcHHHH
Confidence 468999999999999888888999999999999987542
Q ss_pred -----------------------------CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEee
Q 012612 44 -----------------------------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVP 94 (460)
Q Consensus 44 -----------------------------~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~ 94 (460)
+|+++||+||||+|.+++|||++++...+. +. |+.|++|.|+|+|+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~g~i~FI~LrDGSg~~~lQvVv~~~~~~~~--~~--L~~Es~V~V~G~V~~ 178 (633)
T PLN02532 103 SIAKVLSGGGSTYPVREKTEIAIQKSAPPPPSVAYLLISDGSCVASLQVVVDSALAPLT--QL--MATGTCILAEGVLKL 178 (633)
T ss_pred HHHHHHcCCCCCCCcccccccccccccccCCCcEEEEEECCCCccceEEEEeCCcccHh--hc--CCCceEEEEEEEEEe
Confidence 338899999999998889999987644332 45 999999999999998
Q ss_pred cCC--CCceEEEEEeEEEEEecCCC-CCCCCccccChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhCCceeec
Q 012612 95 SQG--SKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWIS 171 (460)
Q Consensus 95 ~~~--~~~~~El~~~~i~ils~~~~-~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~ 171 (460)
++. .++.+||.+++|.||+++.. ++|++++.+++|++|++||||+|++.++++|++||++.+++|+||.++||+||+
T Consensus 179 ~~~~~~~g~iEl~v~~i~VLg~a~~~p~Pi~~k~~~~E~LR~~RhLdLRt~~~~ailRiRS~i~~aiR~ff~~~GFiEV~ 258 (633)
T PLN02532 179 PLPAQGKHVIELEVEKILHIGTVDPEKYPLSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQ 258 (633)
T ss_pred cCCCCCCCcEEEEeeEEEEEecCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEee
Confidence 843 36789999999999999863 599998888999999999999999999999999999999999999999999999
Q ss_pred CceeecCCCCCCCCceeeecc-----------------------------------------------------------
Q 012612 172 SPIITASDCEGAGEQFCVTTL----------------------------------------------------------- 192 (460)
Q Consensus 172 TPiL~~~~~eg~~~~F~v~~~----------------------------------------------------------- 192 (460)
||+|++++|||+++.|.|++.
T Consensus 259 TPiLT~s~~EGa~elF~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (633)
T PLN02532 259 VPIITTTDATGFGEMFRVTTLLGKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDLRKTN 338 (633)
T ss_pred CCeecccCCCccccccceeccccccccccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccc
Confidence 999999999999999887631
Q ss_pred ---------------------------ccCCccccccccHHHHHHHHhcCCCceEEEecccccCCCCCCCCCCccceeee
Q 012612 193 ---------------------------DFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEP 245 (460)
Q Consensus 193 ---------------------------~~~~~~~~L~~Spql~l~l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~ 245 (460)
+||++++||+||||||||++++||+|||+||||||||+++|.|||+||||||+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~f~~dyFg~~ayLtqS~QLylE~~~~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE~ 418 (633)
T PLN02532 339 QLASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESYACALGNVYTFGPRFRADRIDSARHLAEMWMVEV 418 (633)
T ss_pred cccccccccccccccccccccccccccccCCCCeeeccCHHHHHHHHHHhcCceEEEccceecCCCCCCcccccccceee
Confidence 58999999999999999988899999999999999999999999999999999
Q ss_pred eecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHc-ccccccc
Q 012612 246 ELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK-KKFEFLV 324 (460)
Q Consensus 246 e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~-~~~~~~~ 324 (460)
||+|.|++|+|+++|+||+++++.+.++|..++++.+........+.++..+..||+||||.||+++|++.+ .+++...
T Consensus 419 Emaf~d~~dvM~l~E~lI~~v~k~v~~~~~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~~~~~~~e~~~ 498 (633)
T PLN02532 419 EMAFSELEDAMNCAEDYFKFLCKWVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDKKFETKP 498 (633)
T ss_pred eehhcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHHhcCCCccccc
Confidence 999999999999999999999999999988888877644433445566666778999999999999998763 3444456
Q ss_pred ccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccceeeeecccCCceeeecHHHhhhhHHHHHHHHHHc
Q 012612 325 KWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL 404 (460)
Q Consensus 325 ~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~ 404 (460)
+||.||+.++|++|++.++. .|+||+|||.+++||||+.++++.++++|||+++|+|||+||++|+|+++.+.+++++.
T Consensus 499 ~~g~dL~~e~Er~L~~~~~~-~PvFVtdyP~~ikPFY~~~~~d~~~v~~FDLlvp~~GEIigGsqRE~r~e~L~~~~ke~ 577 (633)
T PLN02532 499 EWGIALTTEHLSYLADEIYK-KPVIIYNYPKELKPFYVRLNDDGKTVAAFDLVVPKVGTVITGSQNEERMDILNARIEEL 577 (633)
T ss_pred ccCCccChHHHHHHHHHHcC-CCEEEECCChhhchhhCCcCCCCCceEEEEEecCCCeEEeeCcEeHHHHHHHHHHHHHc
Confidence 89999999999999987555 89999999999999999888888899999999999899999999999999999999999
Q ss_pred CCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCcc
Q 012612 405 KLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459 (460)
Q Consensus 405 ~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~ 459 (460)
|+++++|+|||++++||+|||||||||||||+||+||.+|||||++|||++++|.
T Consensus 578 Gld~e~~ewYLdlrryG~pPHgGfGLG~ERLvm~ltGl~nIRDvi~FPR~~g~~~ 632 (633)
T PLN02532 578 GLPREQYEWYLDLRRHGTVKHSGFSLGFELMVLFATGLPDVRDAIPFPRSWGKAN 632 (633)
T ss_pred CCChhhHHHHHHHHHcCCCCCeEEEEhHHHHHHHHhCCCchheEeecCCCcCcCC
Confidence 9999999999999999999999999999999999999999999999999999985
|
|
| >TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-101 Score=796.51 Aligned_cols=418 Identities=29% Similarity=0.485 Sum_probs=373.1
Q ss_pred eeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc---cchhhHhccCCCCCcEEEEE
Q 012612 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQ 89 (460)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V~V~ 89 (460)
.+++|... +.|+.|+|+|||+++|.+||++|++|||++| .||||++.+. ..++.+++ |+.||+|.|+
T Consensus 2 ~~~~l~~~------~~g~~v~i~G~v~~~R~~g~~~Fi~lrd~~g--~iQ~v~~~~~~~~~~~~~~~~--l~~~s~v~v~ 71 (428)
T TIGR00458 2 YSADIKPE------MDGQEVTFMGWVHEIRDLGGLIFVLLRDREG--LIQITAPAKKVSKNLFKWAKK--LNLESVVAVR 71 (428)
T ss_pred chhhCchh------hCCCEEEEEEEEEEEecCCCcEEEEEEeCCe--eEEEEEECCcCCHHHHHHHhC--CCCCcEEEEE
Confidence 45666543 6789999999999999999999999999997 4999998653 23556777 9999999999
Q ss_pred eeEeecCCCCceEEEEEeEEEEEecCCCCCCCCcccc---ChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhCC
Q 012612 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRV---SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENG 166 (460)
Q Consensus 90 G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~---~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~g 166 (460)
|+|+.++...+++||.+++++|||+|..++|+..+.. +.+...++||||+|++.++++|++||+|++++|+||.++|
T Consensus 72 G~v~~~~~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~~~r~~~R~ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~g 151 (428)
T TIGR00458 72 GIVKIKEKAPGGFEIIPTKIEVINEAKEPLPLDPTEKVPAELDTRLDYRFLDLRRPTVQAIFRIRSGVLESVREFLAEEG 151 (428)
T ss_pred EEEEecCCCCCcEEEEEeEEEEEecCCCCCCCCccccCCCCHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999887766789999999999999976788876543 4566669999999999999999999999999999999999
Q ss_pred ceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCCCCCCCCCCccceeee
Q 012612 167 FIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEP 245 (460)
Q Consensus 167 F~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~ 245 (460)
|+||+||+|+++++||++++|++ +||+.++||+||||+||| ++++|++||||||||||||+++++|||||||||||
T Consensus 152 f~EV~TP~L~~~~~eg~~~~f~v---~~~~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~ 228 (428)
T TIGR00458 152 FIEVHTPKLVASATEGGTELFPI---TYFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDI 228 (428)
T ss_pred CEEEeCCceecCCCCCCcceeee---EecCCcEEECcCHHHHHHHHHhcccCcEEEEecccccCCCCCccchheeeEeee
Confidence 99999999999999999999988 689999999999999998 67899999999999999999988899999999999
Q ss_pred eecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHccccccccc
Q 012612 246 ELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVK 325 (460)
Q Consensus 246 e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~ 325 (460)
|++|.|++|+|+++|+||+++++.+.+++..+++..+.. + .....||+|+||.||++++++.|+. ..
T Consensus 229 e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~~~~~~~~--------~-~~~~~pf~rity~eA~~~l~~~g~~----~~ 295 (428)
T TIGR00458 229 EMAFEDHHDVMDILEELVVRVFEDVPERCAHQLETLEFK--------L-EKPEGKFVRLTYDEAIEMANAKGVE----IG 295 (428)
T ss_pred eeccCCHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccc--------c-ccCCCCceEEEHHHHHHHHHHcCCC----CC
Confidence 999999999999999999999999998876555433210 0 0124589999999999999987764 46
Q ss_pred cccccchhhhcccccccccCccEEEEeCCCcCccccccccC-CccceeeeecccCCceeeecHHHhhhhHHHHHHHHHHc
Q 012612 326 WGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL 404 (460)
Q Consensus 326 ~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~-~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~ 404 (460)
||.+++..+|+.|.+.+ . .|+||+|||.+++|||++.++ ++++++||||+++|. ||+||++|+|+++.+++++++.
T Consensus 296 ~~~~l~~~~E~~l~~~~-~-~p~fi~d~P~~~~pfy~~~~~~~p~~~~~fdl~~~g~-Ei~~g~~r~~~~~~l~~~~~~~ 372 (428)
T TIGR00458 296 WGEDLSTEAEKALGEEM-D-GLYFITDWPTEIRPFYTMPDEDNPEISKSFDLMYRDL-EISSGAQRIHLHDLLVERIKAK 372 (428)
T ss_pred CccccchHHHHHHHHHh-C-CCEEEEeCchhcCcccccccCCCCCEEEEEEEEeCCe-EEeeCchhcCCHHHHHHHHHHc
Confidence 88899999999998765 3 799999999999999976654 457999999999995 9999999999999999999999
Q ss_pred CCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCcc
Q 012612 405 KLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459 (460)
Q Consensus 405 ~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~ 459 (460)
|++++.++|||+|++||||||||||||+|||+|++||.+|||||++|||+++++.
T Consensus 373 g~~~~~~~~yl~a~~~G~pP~~G~GiGidRL~m~l~g~~~Irdv~~FPr~~~r~~ 427 (428)
T TIGR00458 373 GLNPEGFKDYLEAFSYGMPPHAGWGLGAERFVMFLLGLKNIREAVLFPRDRKRLT 427 (428)
T ss_pred CCChHHHHHHHHHHHCCCCCcCceeecHHHHHHHHcCCCchheEEeccCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999974
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). |
| >PRK05159 aspC aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-101 Score=796.54 Aligned_cols=422 Identities=31% Similarity=0.540 Sum_probs=376.6
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc--cchhhHhccCCCCCcEEE
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIW 87 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~--~~~~~~~~~~l~~g~~V~ 87 (460)
++|+++|+... ..|+.|+|+|||+++|.+||++|++|||++|. ||+|++.+. ..++.++. |++||+|.
T Consensus 3 ~~~~~~~l~~~------~~g~~V~i~GrV~~~R~~gk~~Fl~LrD~~g~--iQ~v~~~~~~~~~~~~~~~--L~~gs~V~ 72 (437)
T PRK05159 3 KRHLTSELTPE------LDGEEVTLAGWVHEIRDLGGIAFLILRDRSGI--IQVVVKKKVDEELFETIKK--LKRESVVS 72 (437)
T ss_pred ceeEhhhCChh------hCCCEEEEEEEeEeeecCCCeEEEEEEcCCcE--EEEEEeCCccHHHHHHHhC--CCCCcEEE
Confidence 68999999874 67999999999999999999999999999974 999998763 23555777 99999999
Q ss_pred EEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccc---cChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhh
Q 012612 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 164 (460)
Q Consensus 88 V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~---~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~ 164 (460)
|+|++.+++..++++||.+++|+|||+|..++|+..+. .+.+.++++||||+|++.++++|++||+|++++|+||.+
T Consensus 73 v~G~v~~~~~~~~~~el~~~~i~vls~a~~~~P~~~~~~~~~~~~~~~~~r~Ldlr~~~~~~~l~~Rs~i~~~iR~ff~~ 152 (437)
T PRK05159 73 VTGTVKANPKAPGGVEVIPEEIEVLNKAEEPLPLDISGKVLAELDTRLDNRFLDLRRPRVRAIFKIRSEVLRAFREFLYE 152 (437)
T ss_pred EEEEEEcCCCCCCCEEEEEeEEEEEeCCCCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999877778999999999999998668875432 356778899999999999999999999999999999999
Q ss_pred CCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCCCCCCCCCCcccee
Q 012612 165 NGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMI 243 (460)
Q Consensus 165 ~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~l 243 (460)
+||+||+||+|++++++|+++.|++ +||+.++||+||||+||| ++++|++||||||||||||++++.|||||||||
T Consensus 153 ~gf~EV~TP~L~~~~~eg~~~~f~~---~~~~~~~~L~~Spql~~q~l~~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~l 229 (437)
T PRK05159 153 NGFTEIFTPKIVASGTEGGAELFPI---DYFEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEHNTSRHLNEYTSI 229 (437)
T ss_pred CCCEEEeCCcccccCCCCCcceEeE---EecCCceEecCCHHHHHHHHHhcCCCcEEEEeceeeCCCCCCcccchhhhee
Confidence 9999999999999999999999988 789999999999999998 556789999999999999999888999999999
Q ss_pred eeeecCCC-HHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHcccccc
Q 012612 244 EPELAFAD-LKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF 322 (460)
Q Consensus 244 E~e~~~~~-~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~ 322 (460)
||||+|.+ ++++|+++|+||+++++.+.+++..++++.+.. +. ..+.||+++||.||++++++.|.+
T Consensus 230 E~e~a~~~~~~~lm~~~e~lv~~i~~~~~~~~~~~i~~~~~~--------~~-~~~~~f~rit~~eA~~~l~~~~~~--- 297 (437)
T PRK05159 230 DVEMGFIDDHEDVMDLLENLLRYMYEDVAENCEKELELLGIE--------LP-VPETPIPRITYDEAIEILKSKGNE--- 297 (437)
T ss_pred eeeeeecccHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhccC--------CC-cCCCCceEeEHHHHHHHHHHcCCC---
Confidence 99999998 999999999999999999988776665544321 10 234689999999999999887753
Q ss_pred ccccccccchhhhccccccc----ccCccEEEEeCCCcCccccccccCC-ccceeeeecccCCceeeecHHHhhhhHHHH
Q 012612 323 LVKWGCDLQSEHERYLTEEA----FGGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLEYL 397 (460)
Q Consensus 323 ~~~~~~~l~~~~e~~l~~~~----~~~~p~~I~~fP~~~~pf~~~~~~~-~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~ 397 (460)
..||.+++...|+.+.+.+ .. .|+||+|||.+++|||++.+++ +++++||||+++|+ ||+||++|+||++++
T Consensus 298 -~~~~~~~~~~~e~~l~~~~~~~~~~-~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~g~-Ei~~g~~r~~d~~~~ 374 (437)
T PRK05159 298 -ISWGDDLDTEGERLLGEYVKEEYGS-DFYFITDYPSEKRPFYTMPDEDDPEISKSFDLLFRGL-EITSGGQRIHRYDML 374 (437)
T ss_pred -CCCCCCCCcHHHHHHHHHHhhhcCC-ceEEEecCchhcCcceeeecCCCCCEEEEEEEEECCE-EEeeCeEEcCCHHHH
Confidence 4578889888888875432 22 3899999999999999877654 46899999999996 999999999999999
Q ss_pred HHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCcc
Q 012612 398 EGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459 (460)
Q Consensus 398 ~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~ 459 (460)
++++++.|++++.++|||+|++||+|||||||||+|||+|++||.+|||||++|||++++|.
T Consensus 375 ~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~giGidRl~m~~~g~~~Irdv~~FPr~~~~~~ 436 (437)
T PRK05159 375 VESIKEKGLNPESFEFYLEAFKYGMPPHGGFGLGLERLTMKLLGLENIREAVLFPRDRHRLT 436 (437)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHCCCCCCCeeeEhHHHHHHHHcCCCchhEEeeccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999984
|
|
| >KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-100 Score=740.47 Aligned_cols=433 Identities=59% Similarity=0.988 Sum_probs=405.8
Q ss_pred cccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeec
Q 012612 16 DVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS 95 (460)
Q Consensus 16 ~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~ 95 (460)
++....+.+....|+.+++.|||+++|..|+++|++|+||++.+++|||++++ ..+. +.+|++|.|+|.+..+
T Consensus 7 ~v~~~~~~~~~~~g~~~~i~GWvKsvr~~~~~~Fl~i~DGs~~~~lQvVv~~~-----~~q~--la~Gt~i~~~g~l~~~ 79 (446)
T KOG0554|consen 7 SVLSGRILGHPRAGDTISIGGWVKSVRKLKKVTFLDINDGSCPSPLQVVVDSE-----QSQL--LATGTCISAEGVLKVS 79 (446)
T ss_pred eeeccccccCCCCCCceeecchhhhcccccceEEEEecCCCCCcceEEEechH-----Hhhh--ccccceEEEEeeEEec
Confidence 33333333456789999999999999999999999999999999999999983 2344 9999999999999999
Q ss_pred CCCCceEEEEEeEEEEEecCCCCCCCCccccChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhCCceeecCcee
Q 012612 96 QGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPII 175 (460)
Q Consensus 96 ~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL 175 (460)
+.+++.+|+.+++|.+++.+++++|++++.++++++|+..||+.|++...+++|+||.+..+++.||.+++|++|+||+|
T Consensus 80 ~~~~q~iel~~eki~~vG~v~~~ypl~Kk~lt~e~LR~~~HLR~Rt~~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPii 159 (446)
T KOG0554|consen 80 KGAKQQIELNAEKIKVVGTVDESYPLQKKKLTPEMLRDKLHLRSRTAKVGAVLRVRSALAFATHSFFQSHDFTYINTPII 159 (446)
T ss_pred cchheeeeeeeeEEEEEeecCCCCCCccccCCHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHcCceEecCcEe
Confidence 77888999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCceeeecc-----ccCCccccccccHHHHHHHHhcCCCceEEEecccccCCCCCCCCCCccceeeeeecCC
Q 012612 176 TASDCEGAGEQFCVTTL-----DFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 250 (460)
Q Consensus 176 ~~~~~eg~~~~F~v~~~-----~~~~~~~~L~~Spql~l~l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~ 250 (460)
|+++|||+++.|.|++. +||++++||++|.|||++.|+++++|||.+||+||+|+++++|||.||||+|.|+||+
T Consensus 160 Tt~DCEGaGE~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE~~a~~LsrvyTfgP~FRAEnS~tsRHLAEFwMlEaE~AF~ 239 (446)
T KOG0554|consen 160 TTNDCEGAGEVFQVTTLTDYSKDFFGRPAFLTVSGQLHLEAMACALSRVYTFGPTFRAENSHTSRHLAEFWMLEAELAFA 239 (446)
T ss_pred eccCCCCCcceEEEEecCcccccccCCceEEEEeceehHHHHHhhhcceEeeccceecccCCchhHHhhhhhhhhHHHHH
Confidence 99999999999999865 7999999999999999999999999999999999999999999999999999999999
Q ss_pred C-HHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHc-ccccccccccc
Q 012612 251 D-LKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK-KKFEFLVKWGC 328 (460)
Q Consensus 251 ~-~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~-~~~~~~~~~~~ 328 (460)
+ ++|+|+++|.+++++++.++++|.+++++..++..+..+..++.....+|.+++|.||+++|++.. ..++.+++||.
T Consensus 240 ~sl~d~m~~~e~~~K~mik~llek~~edmel~~k~~~~~~~~rl~~~~~~~~~~~tYteAie~L~~a~t~~fk~~~kwG~ 319 (446)
T KOG0554|consen 240 ESLDDLMSCAEAYIKHMIKYLLEKCIEDMELMHKNEDPGSIDRLELVAKENLLRITYTEAIELLQKAVTKKFKTPPKWGI 319 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhheeccccCCCccchhhhhccchhhhccHHHHHHHHHHhcccccccCccccc
Confidence 8 999999999999999999999999999998888777888888888888899999999999999987 66777889999
Q ss_pred ccchhhhcccccccccCccEEEEeCCCcCccccccccCCccceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCc
Q 012612 329 DLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNR 408 (460)
Q Consensus 329 ~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~ 408 (460)
+|++++|++|++.+++ .||||+|||..++||||+.++++.++.+|||++||+|||+|||+|+.+ .+++++.|..+
T Consensus 320 ~l~~ehe~yL~~~~~~-~PVfV~dYP~~iKpFYMr~n~~~~tVaa~DlLVP~vGEliGGSlREe~----~~~l~e~g~~~ 394 (446)
T KOG0554|consen 320 DLSTEHEKYLVEECFK-KPVFVTDYPKGIKPFYMRLNDDGKTVAAFDLLVPGVGELIGGSLREER----KARLKERGLTR 394 (446)
T ss_pred ccchhhHHHHHHHhcC-CCEEEEeccccccceEEEecCCCCeeEEEEeecccchhhcCcccchhh----HHHHHhcCCCc
Confidence 9999999999998875 999999999999999999998888899999999999999999999988 56678899999
Q ss_pred ccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCccC
Q 012612 409 DSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 460 (460)
Q Consensus 409 ~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~~ 460 (460)
++++|||++++||.+||||||||+||++++++|.+||||||||||.+++++.
T Consensus 395 ~~~eWYldLRryG~vphgGFGlGfER~lq~~tG~~nIkd~IPFpR~~~s~~~ 446 (446)
T KOG0554|consen 395 EELEWYLDLRRYGSVPHGGFGLGFERMLQYLTGNDNIKDVIPFPRYPGSAEL 446 (446)
T ss_pred cccceehhhhhcCCCCCCcccccHHHHHHHHhCCcchhhceecCCCcccccC
Confidence 9999999999999999999999999999999999999999999999998863
|
|
| >PTZ00401 aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-98 Score=785.27 Aligned_cols=430 Identities=25% Similarity=0.409 Sum_probs=366.8
Q ss_pred eeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc----cchhhHhccCCCCCcEE
Q 012612 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA----EGYDQVKSGLITTGASI 86 (460)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~----~~~~~~~~~~l~~g~~V 86 (460)
.++|++|... ...|+.|+|+|||+++|.+|+++|++|||+++ +||+|++.+. ..++.++. |+.||+|
T Consensus 65 ~~~i~~l~~~-----~~~g~~V~v~Grv~~~R~~Gk~~Fl~LRd~~~--~iQ~v~~~~~~~~~~~~~~~~~--l~~esiV 135 (550)
T PTZ00401 65 FIPVAVLSKP-----ELVDKTVLIRARVSTTRKKGKMAFMVLRDGSD--SVQAMAAVEGDVPKEMIDFIGQ--IPTESIV 135 (550)
T ss_pred eEEHHHCCcc-----ccCCCEEEEEEEEEEEecCCCeEEEEEEeCCc--CEEEEEECCCccCHHHHHHHhc--CCCCCEE
Confidence 5788888754 23799999999999999999999999999996 5999997542 12445667 9999999
Q ss_pred EEEeeEeecC-----CCCceEEEEEeEEEEEecCCCCCCCCcccc-----------ChhhhhccccccCCChhhhHHHHH
Q 012612 87 WIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPSYPIQKKRV-----------SREFLRTKAHLRPRTNTFGAVARV 150 (460)
Q Consensus 87 ~V~G~v~~~~-----~~~~~~El~~~~i~ils~~~~~~p~~~~~~-----------~~~~~r~~r~l~~R~~~~~~~~~~ 150 (460)
.|+|+|++.+ +..+++||++++++|||+|..++|+..++. +.+...++||||+|++.++++|++
T Consensus 136 ~V~G~v~~~~~~~~~~~~~~~El~v~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~dtrl~~R~LdlR~~~~~~i~r~ 215 (550)
T PTZ00401 136 DVEATVCKVEQPITSTSHSDIELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVNFDTRLNSRWMDLRTPASGAIFRL 215 (550)
T ss_pred EEEEEEEecCccCCCCCCccEEEEeeEEEEEeCCCCCCCCCcccccccccccccccChhhhhhhhhhhhcCHHHHHHHHH
Confidence 9999999742 345789999999999999987788865432 345555999999999999999999
Q ss_pred HHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHHHH-hcCCCceEEEecccccC
Q 012612 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETY-ATALSNVYTFGPTFRAE 229 (460)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~l~-~~g~~rvfeI~~~FR~E 229 (460)
||.|++++|+||.++||+||+||+|+++++||++++|.| +||+.++||+||||+|||++ ++|++||||||||||||
T Consensus 216 rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~egga~~F~v---~yf~~~~~L~qSpql~kq~li~~g~~rVfeI~p~FRaE 292 (550)
T PTZ00401 216 QSRVCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVFKL---EYFNRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRSE 292 (550)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCccccCCCCcccccccc---ccCCCCeecCCCHHHHHHHHHhcCCCCEEEEeCeEeCC
Confidence 999999999999999999999999999999999999998 79999999999999999855 57899999999999999
Q ss_pred CCCCCCCCCccceeeeeecCC-CHHHHHHHHHHHHHHHHHHHhccCccccccccccc--------c--------------
Q 012612 230 NSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWI--------E-------------- 286 (460)
Q Consensus 230 ~~~~~rHl~EFt~lE~e~~~~-~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~--------~-------------- 286 (460)
+++|+|||||||||||||+|. +|+++|+++|+||.++++.+.+.+ .+++...... .
T Consensus 293 ~s~T~RHl~EFt~Le~E~~~~~~y~evm~~~e~l~~~i~~~l~~~~-~ei~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~ 371 (550)
T PTZ00401 293 NSNTHRHLTEFVGLDVEMRINEHYYEVLDLAESLFNYIFERLATHT-KELKAVCQQYPFEPLVWKLTPERMKELGVGVIS 371 (550)
T ss_pred CCCCCCCccchhhhhhhhHhcCCHHHHHHHHHHHHHHHHHHHHccc-hhhhhhccccccccccccccHHHHHhcCCCccc
Confidence 999999999999999999986 799999999999999999887652 2322221000 0
Q ss_pred ------chhHhhhhhhhcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccc---cccccCccEEEEe-CCCc
Q 012612 287 ------KGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLT---EEAFGGCPVIVSD-YPKE 356 (460)
Q Consensus 287 ------~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~---~~~~~~~p~~I~~-fP~~ 356 (460)
..+.+.+.. .+.+|+||+|.||+++|++.+. ....|+.|++...|+.|. ++.++ .|+||+| ||..
T Consensus 372 ~~~~~~~~l~~~~~~-~~~~~~rl~y~eai~lL~~~~~---~~~~~~~dl~~~~E~~L~~~v~~~~~-~~~fI~d~yP~~ 446 (550)
T PTZ00401 372 EGVEPTDKYQARVHN-MDSRMLRINYMHCIELLNTVLE---EKMAPTDDINTTNEKLLGKLVKERYG-TDFFISDRFPSS 446 (550)
T ss_pred ccccchHHHHHHHHh-cCCCcccccHHHHHHHHHHhcc---cCCCcccccCchHHHHHHHHHHHhcC-CCEEEECCCChh
Confidence 001112221 3567999999999999999752 224678899999998874 33334 7999998 9999
Q ss_pred CccccccccC-CccceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHH
Q 012612 357 IKAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERL 435 (460)
Q Consensus 357 ~~pf~~~~~~-~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL 435 (460)
++|||++.++ ++++++||||+++| +||+||++|+||++.|.+++++.|++++.++|||+|++||+|||||||||+|||
T Consensus 447 ~rpFY~~~~~~dp~~s~~fDlf~~G-~EI~sG~qR~~d~~~l~~r~~~~G~d~~~~~~Yl~a~~~G~PPhgG~GiGlERL 525 (550)
T PTZ00401 447 ARPFYTMECKDDERFTNSYDMFIRG-EEISSGAQRIHDPDLLLARAKMLNVDLTPIKEYVDSFRLGAWPHGGFGVGLERV 525 (550)
T ss_pred hCchhcCcCCCCCCEEEEEEEEeCC-EEEccchhhcCCHHHHHHHHHHcCCCchhhHHHHHHHHcCCCCCceEEEhHHHH
Confidence 9999976554 55799999999999 599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCccccccccCCCCCcc
Q 012612 436 VQFATGVENIRDAIPFPRTPGSVE 459 (460)
Q Consensus 436 ~m~l~~~~~Irdv~~FPr~~~~~~ 459 (460)
+|++||.+|||||++|||+++|+.
T Consensus 526 vM~~lg~~nIR~v~lFPRdp~rl~ 549 (550)
T PTZ00401 526 VMLYLGLSNVRLASLFPRDPQRTT 549 (550)
T ss_pred HHHHhCCCcHheeecCCCCCCCCC
Confidence 999999999999999999999974
|
|
| >PLN02850 aspartate-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-98 Score=783.79 Aligned_cols=426 Identities=26% Similarity=0.432 Sum_probs=366.7
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc-----chhhHhccCCCCCc
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-----GYDQVKSGLITTGA 84 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~-----~~~~~~~~~l~~g~ 84 (460)
..+.|.+|... +.|+.|+|+|||+++|.+|+++|++|||+++ +||+|+..+.. .++.+.. |+.||
T Consensus 68 ~~~~i~~l~~~------~~g~~V~v~Grv~~~R~~gk~~Fl~Lrd~~~--~iQ~v~~~~~~~~~~~~~~~~~~--l~~es 137 (530)
T PLN02850 68 EWTDVSDLGEE------LAGSEVLIRGRVHTIRGKGKSAFLVLRQSGF--TVQCVVFVSEVTVSKGMVKYAKQ--LSRES 137 (530)
T ss_pred eEeEhhhcchh------hCCCEEEEEEEEEEEccCCCeEEEEEEeCCc--CEEEEEECCccccCHHHHHHHhC--CCCCC
Confidence 34777788653 7899999999999999999999999999985 59999976532 1334667 99999
Q ss_pred EEEEEeeEeecC----CCCceEEEEEeEEEEEecCCCCCCCCccc--------------------cChhhhhccccccCC
Q 012612 85 SIWIQGNVVPSQ----GSKQKVELKVNKIVLVGKSDPSYPIQKKR--------------------VSREFLRTKAHLRPR 140 (460)
Q Consensus 85 ~V~V~G~v~~~~----~~~~~~El~~~~i~ils~~~~~~p~~~~~--------------------~~~~~~r~~r~l~~R 140 (460)
+|.|+|+|++++ +.++++||.+++|+|||+|...+|+..++ .+.+...+|||||+|
T Consensus 138 ~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~R~LdlR 217 (530)
T PLN02850 138 VVDVEGVVSVPKKPVKGTTQQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLR 217 (530)
T ss_pred EEEEEEEEEccCcCCCCCCccEEEEEeEEEEEeCCCCCCCCChhhcccccccccccccccccccccChhhhhcchhhhhc
Confidence 999999998532 23458999999999999998778876543 123455599999999
Q ss_pred ChhhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCce
Q 012612 141 TNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNV 219 (460)
Q Consensus 141 ~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rv 219 (460)
++.++++|++||.|++++|+||.++||+||+||+|+++++||++++|.| +||++++||+||||+||| ++++|++||
T Consensus 218 ~~~~qaifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v---~yf~~~~~L~qSpql~kq~li~~g~~rV 294 (530)
T PLN02850 218 TPANQAIFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRL---DYKGQPACLAQSPQLHKQMAICGDFRRV 294 (530)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCCccccceeee---ccCCcceecCCCHHHHHHHHHHhcCCce
Confidence 9999999999999999999999999999999999999999999999998 799999999999999998 567899999
Q ss_pred EEEecccccCCCCCCCCCCccceeeeeecCC-CHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhc
Q 012612 220 YTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE 298 (460)
Q Consensus 220 feI~~~FR~E~~~~~rHl~EFt~lE~e~~~~-~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~ 298 (460)
||||||||||+++|.|||||||||||||+|. +|+|+|+++|+||++++..+.+.+..+++......+. ..+ +.++
T Consensus 295 feIgp~FRaE~s~t~RHl~EFt~Le~Em~~~~~y~evm~~~E~ll~~i~~~l~~~~~~el~~i~~~~~~---~~~-~~~~ 370 (530)
T PLN02850 295 FEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLNERCKKELEAIREQYPF---EPL-KYLP 370 (530)
T ss_pred EEEecccccCCCCCCccchhhccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhcccCCc---chh-hhcC
Confidence 9999999999999999999999999999998 5999999999999999999988776665443321110 111 1222
Q ss_pred CCCcccCHHHHHHHHHHHccccccccccccccchhhhccccc----ccccCccEEEEeCCCcCccccccccC-Cccceee
Q 012612 299 RDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE----EAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAA 373 (460)
Q Consensus 299 ~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~----~~~~~~p~~I~~fP~~~~pf~~~~~~-~~~~~~~ 373 (460)
++++++|.||+++|++.|+.. .++.|++...|+.|.. ++.. .++||+|||..++|||++.++ +++++++
T Consensus 371 -~~~rit~~ea~~~L~~~g~~~----~~~~dl~~~~E~~Lg~~v~~~~~~-~~~ii~~yP~~~~pfY~~~~~~d~~~~~~ 444 (530)
T PLN02850 371 -KTLRLTFAEGIQMLKEAGVEV----DPLGDLNTESERKLGQLVKEKYGT-DFYILHRYPLAVRPFYTMPCPDDPKYSNS 444 (530)
T ss_pred -CcccCCHHHHHHHHHHcCCCC----CCCCCcchHHHHHHHHHHHHhcCC-CeEEEECCccccCchhccccCCCCCeEEE
Confidence 678999999999999988642 3566888888887743 3433 467789999999999876554 5579999
Q ss_pred eecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccC
Q 012612 374 MDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 453 (460)
Q Consensus 374 fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr 453 (460)
|||+++| +||+||++|+||++.|+++++..|++++.++|||+|++||+|||||||||||||+||+||.+|||||++|||
T Consensus 445 fDl~i~G-~EI~~G~qr~~d~~~l~~r~~~~g~d~~~~~~Yl~a~~~G~pPhgG~GiGlERLvM~l~g~~nIr~v~~FPR 523 (530)
T PLN02850 445 FDVFIRG-EEIISGAQRVHDPELLEKRAEECGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPR 523 (530)
T ss_pred EEEEeCC-EEEeccceecCCHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCCceEEEcHHHHHHHHcCCCchheEeecCC
Confidence 9999999 599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcc
Q 012612 454 TPGSVE 459 (460)
Q Consensus 454 ~~~~~~ 459 (460)
+|+||.
T Consensus 524 ~p~rl~ 529 (530)
T PLN02850 524 DPQRLA 529 (530)
T ss_pred CCCCCC
Confidence 999974
|
|
| >PLN02502 lysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-97 Score=774.86 Aligned_cols=440 Identities=20% Similarity=0.273 Sum_probs=378.7
Q ss_pred CCCccccceeeeccccCCccC---CCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc-----chhh
Q 012612 3 SKVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-----GYDQ 74 (460)
Q Consensus 3 ~~~~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~-----~~~~ 74 (460)
|++++|.++++++|+.+.|++ +.+..++.|+|+|||+++|.+||++|++|+|++| .||||++.+.. .|+.
T Consensus 79 pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~Gk~~F~~LrD~~g--~iQv~~~~~~~~~~~~~~~~ 156 (553)
T PLN02502 79 PYPYKFDVTHTAPELQEKYGSLENGEELEDVSVSVAGRIMAKRAFGKLAFYDLRDDGG--KIQLYADKKRLDLDEEEFEK 156 (553)
T ss_pred CCCCCCCCCccHHHHHHHhhccccccccCCCEEEEEEEEEEEecCCCeEEEEEecCCc--cEEEEEECccccchhHHHHH
Confidence 889999999999999887743 4456788999999999999999999999999996 59999986532 2555
Q ss_pred H-hccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccccCh---hhhhccccccCC-ChhhhHHHH
Q 012612 75 V-KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR---EFLRTKAHLRPR-TNTFGAVAR 149 (460)
Q Consensus 75 ~-~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~~---~~~r~~r~l~~R-~~~~~~~~~ 149 (460)
+ +. |+.||+|.|+|++.+++++ ++||.+++|+|||+|. .|+|.+.+++ +...++||||++ ++..+++|+
T Consensus 157 ~~~~--l~~gdiV~V~G~~~~t~~g--elel~~~~i~vLs~~l--~plP~k~~~~~d~e~r~r~RyLdl~~n~~~~~i~r 230 (553)
T PLN02502 157 LHSL--VDRGDIVGVTGTPGKTKKG--ELSIFPTSFEVLTKCL--LMLPDKYHGLTDQETRYRQRYLDLIANPEVRDIFR 230 (553)
T ss_pred HHhC--CCCCcEEEEEEEEEecCCC--CEEEEEeEEEEEeccC--CCCCcccccccchhhhccchhhhhhcCHHHHHHHH
Confidence 5 35 9999999999999998865 8999999999999997 5676666653 444489999995 889999999
Q ss_pred HHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEeccccc
Q 012612 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRA 228 (460)
Q Consensus 150 ~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~ 228 (460)
+||+|+++||+||.++||+||+||+|+++.+++++.+|. +++++++.++||+||||||+| |+++|++|||||||||||
T Consensus 231 ~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~gGA~a~pF~-t~~n~~~~~~yL~~Spel~lK~L~v~g~~rVfeIg~~FRn 309 (553)
T PLN02502 231 TRAKIISYIRRFLDDRGFLEVETPMLNMIAGGAAARPFV-THHNDLNMDLYLRIATELHLKRLVVGGFERVYEIGRQFRN 309 (553)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeeeccCCCcccccee-eecccCCcceeeecCHHHHHHHHHHhccCCEEEEcCeeeC
Confidence 999999999999999999999999999987766778996 455899999999999999986 789999999999999999
Q ss_pred CCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCc-----cccccccccccchhHhhhhhhhcCCCcc
Q 012612 229 ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK-----EDMDFFNTWIEKGIIDRLSTVAERDFVQ 303 (460)
Q Consensus 229 E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~-----~~i~~~~~~~~~~~~~~l~~~~~~~~~~ 303 (460)
|+++ .||||||||||||++|+|++|+|+++|+||+++++.+.+.+. .++++..+|.+.++.+.+++..+.+|+.
T Consensus 310 E~~~-~rH~pEFtmlE~y~a~~d~~dlm~~~E~li~~i~~~v~~~~~~~~~~~~i~~~~p~~rit~~e~l~~~~g~~~~~ 388 (553)
T PLN02502 310 EGIS-TRHNPEFTTCEFYQAYADYNDMMELTEEMVSGMVKELTGSYKIKYHGIEIDFTPPFRRISMISLVEEATGIDFPA 388 (553)
T ss_pred CCCC-CccccceeehhhhhhcCCHHHHHHHHHHHHHHHHHHHhcccccccCCccccCCCCceeccHHHHHHHHhCCCCCc
Confidence 9996 599999999999999999999999999999999999986653 3456667787788889999888888877
Q ss_pred -cCHHHHHHHHH----HHccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccceeeeeccc
Q 012612 304 -LSYTDAIELLI----KAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLV 378 (460)
Q Consensus 304 -i~~~ea~~~l~----~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~fDl~~ 378 (460)
++++++.+.|. +.++.+.....||..++.+++.++.+.+ . +|+||+|||..++|||++..+++++++|||||+
T Consensus 389 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ve~~l-~-~PtFV~dyP~~~splak~~~~~p~~~erFELfi 466 (553)
T PLN02502 389 DLKSDEANAYLIAACEKFDVKCPPPQTTGRLLNELFEEFLEETL-V-QPTFVLDHPVEMSPLAKPHRSKPGLTERFELFI 466 (553)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHHHHhhc-C-CCEEEECCccccCcccccCCCCCCeEEEEEEEe
Confidence 88888876554 3455444445688888999999888765 4 799999999999999987667778999999999
Q ss_pred CCceeeecHHHhhhhHHHHHHHHHHc----CC-Ccc--cH-HHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCcccccc
Q 012612 379 PRIGELIGGSQREERLEYLEGRLDEL----KL-NRD--SY-WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIP 450 (460)
Q Consensus 379 ~G~~Ei~~g~~r~~~~~~~~~~~~~~----~~-~~~--~~-~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~ 450 (460)
+|+ ||+||+++.||+.+|+++|... +. +.+ .+ ++||+|++||||||||||||||||+|+|||..|||||++
T Consensus 467 ~G~-Eiangy~ELnDp~~Qr~rf~~q~~~~~~~~~~~~~~De~fl~aleyGmPP~gG~GiGiDRLvMlltg~~sIrdVi~ 545 (553)
T PLN02502 467 NGR-ELANAFSELTDPVDQRERFEEQVKQHNAGDDEAMALDEDFCTALEYGLPPTGGWGLGIDRLVMLLTDSASIRDVIA 545 (553)
T ss_pred CCe-EEccchhhccCHHHHHHHHHHHHHHhhcCCccccccHHHHHHHHHcCCCCCceEEehHHHHHHHHcCCcchheeec
Confidence 997 9999999999999988877532 21 112 23 669999999999999999999999999999999999999
Q ss_pred ccCCC
Q 012612 451 FPRTP 455 (460)
Q Consensus 451 FPr~~ 455 (460)
||+..
T Consensus 546 FP~~k 550 (553)
T PLN02502 546 FPAMK 550 (553)
T ss_pred CCcCC
Confidence 99875
|
|
| >TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-96 Score=768.42 Aligned_cols=430 Identities=20% Similarity=0.323 Sum_probs=358.7
Q ss_pred CCCccccceeeeccccCCccC----CCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc---chhhH
Q 012612 3 SKVGEFRKKLKIVDVKGGPNE----GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQV 75 (460)
Q Consensus 3 ~~~~~~~~~~~i~~l~~~~~~----~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~---~~~~~ 75 (460)
|++++|.++++++++.+.|++ .....++.|+|+|||+++|.+||++|++|+|++| +||+|++.+.. .++.+
T Consensus 23 ~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~gk~~F~~l~D~~g--~iQ~~~~~~~~~~~~~~~~ 100 (496)
T TIGR00499 23 PYLNKFERTHSSQEFQEEYADLSNEELEDKNIEVSIAGRIMARRSMGKATFITLQDESG--QIQLYVNKDDLPEDFYEFD 100 (496)
T ss_pred CCCCCCCCCcCHHHHHHHhhccCccchhcCCCEEEEEEEEEEEecCCCeEEEEEEcCCc--cEEEEEECCcCcHHHHHHH
Confidence 888999999999999887642 1124478899999999999999999999999996 49999987642 23344
Q ss_pred hccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccccCh---hhhhccccccCC-ChhhhHHHHHH
Q 012612 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR---EFLRTKAHLRPR-TNTFGAVARVR 151 (460)
Q Consensus 76 ~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~~---~~~r~~r~l~~R-~~~~~~~~~~R 151 (460)
+. .|+.||+|.|+|++.+++++ ++||.+++|++||+|. .|+|.+.+++ +...++||||+| ++.++++|++|
T Consensus 101 ~~-~l~~gd~V~v~G~~~~t~~g--elel~~~~i~ilsk~~--~plP~k~~~~~d~e~r~r~R~Ldl~~n~~~~~~~r~R 175 (496)
T TIGR00499 101 EY-LLDLGDIIGVTGYPFKTKTG--ELSVHVTELQILTKAL--RPLPDKFHGLTDQETRYRQRYLDLIVNPDSRQTFLVR 175 (496)
T ss_pred Hh-cCCCCCEEEEEEEEEECCCC--cEEEEeeEEEEEecCC--CCCCccccccCChhhhhhhhhhhhhcCHHHHHHHHHH
Confidence 32 28999999999999998764 7999999999999997 5666666554 554589999999 57999999999
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCC
Q 012612 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAEN 230 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~ 230 (460)
|+|++++|+||.++||+||+||+|+++.+++++++|.+ ++++++.++||+|||||||| |+++|++||||||||||||+
T Consensus 176 s~i~~~iR~fl~~~gF~EVeTP~L~~~~gga~a~pF~t-~~~~~~~~~yLriSpELylKrlivgG~~rVfeIg~~FRnE~ 254 (496)
T TIGR00499 176 SKIIKAIRRFLDDRGFIEVETPMLQVIPGGANARPFIT-HHNALDMDLYLRIAPELYLKRLIVGGFEKVYEIGRNFRNEG 254 (496)
T ss_pred HHHHHHHHHHHHHCcCEEEeCCeeecCCCCccceeEEe-ecccCCCceEEecCHHHHHHHHHhCCCCceEEEecceecCC
Confidence 99999999999999999999999998877767789975 34679999999999999986 78999999999999999999
Q ss_pred CCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHH
Q 012612 231 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAI 310 (460)
Q Consensus 231 ~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~ 310 (460)
++ .||||||||||||++|+||+|+|+++|+||+++++.+.+++...+. + ....+..||+|+||.||+
T Consensus 255 ~~-~rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~~~l~~~~~~~~~--~----------~~~~~~~pf~rit~~eai 321 (496)
T TIGR00499 255 VD-TTHNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQELLGTTKITYG--E----------LEIDFKKPFKRITMVEAI 321 (496)
T ss_pred CC-CcccchhheeehhhhcCCHHHHHHHHHHHHHHHHHHHhcccceecC--c----------eeccCCCCceEEEHHHHH
Confidence 95 6999999999999999999999999999999999999866543221 1 001234578888888888
Q ss_pred HHHHH-Hcccc---------------------ccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCc
Q 012612 311 ELLIK-AKKKF---------------------EFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG 368 (460)
Q Consensus 311 ~~l~~-~~~~~---------------------~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~ 368 (460)
+++.+ .|+++ .....||..++..++.++.+.+ . +|+||+|||.+++||++...+++
T Consensus 322 ~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ve~~l-~-~P~fv~dyP~~~splak~~~~~p 399 (496)
T TIGR00499 322 KKYDMETGIDFDDLKDFETAKALAKKIGIEVAEKSLTLGHILNELFEQFLEHTL-I-QPTFITHYPAEISPLAKRNPSNP 399 (496)
T ss_pred HHHHHhcCCCchhcCCHHHHHHHHHHcCCCcCCCCCCHHHHHHHHHHHHHHhcc-C-CCEEEECCchhcCcccccCCCCC
Confidence 86643 23221 1112345566677777776554 4 79999999999999976555566
Q ss_pred cceeeeecccCCceeeecHHHhhhhHHHHHHHHH------HcCCCcccH--HHHHHHHhcCCCCCcceeccHHHHHHHHc
Q 012612 369 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD------ELKLNRDSY--WWYLDLRHYGSVPHAGFGLGFERLVQFAT 440 (460)
Q Consensus 369 ~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~------~~~~~~~~~--~~yl~~~~~G~pp~~G~giGidRL~m~l~ 440 (460)
.+++||||+++|+ ||+||++|+||+++|+++++ +.|.+++.+ +|||+|++||||||||||||||||+|++|
T Consensus 400 ~~~~rFeL~i~G~-Ei~ng~~El~dp~~q~~rf~~q~~~k~~g~~~~~~~de~yl~a~~~G~PP~gG~GiGiDRLvMllt 478 (496)
T TIGR00499 400 EFTDRFELFIAGK-EIANAFSELNDPLDQRERFEQQVAEKEAGDDEAQFVDEDFVEALEYGMPPTGGLGIGIDRLVMLLT 478 (496)
T ss_pred CeEEEEEEEeCCe-EEeccccccCCHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHcCCCCCceEEEhHHHHHHHHh
Confidence 7999999999997 99999999999999999875 457776654 79999999999999999999999999999
Q ss_pred CCCCccccccccCCCC
Q 012612 441 GVENIRDAIPFPRTPG 456 (460)
Q Consensus 441 ~~~~Irdv~~FPr~~~ 456 (460)
|.+|||||++||+++.
T Consensus 479 g~~~Irdvi~FP~~~~ 494 (496)
T TIGR00499 479 DSKSIRDVILFPAMRP 494 (496)
T ss_pred CCCcHheeccCCCCCC
Confidence 9999999999999864
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms. |
| >PRK00484 lysS lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-96 Score=764.83 Aligned_cols=429 Identities=21% Similarity=0.317 Sum_probs=354.1
Q ss_pred CCCccccceeeeccccCCccC----CCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc---chhhH
Q 012612 3 SKVGEFRKKLKIVDVKGGPNE----GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQV 75 (460)
Q Consensus 3 ~~~~~~~~~~~i~~l~~~~~~----~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~---~~~~~ 75 (460)
|++++|.++++++++...+.+ .....++.|+|+|||+++|.+|+++|++|||++| .||||++++.. .|+.+
T Consensus 24 ~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~G~v~~~R~~g~~~Fi~lrD~~g--~iQ~v~~~~~~~~~~~~~~ 101 (491)
T PRK00484 24 PYPNKFERTHTAAELRAKYDDKEKEELEELEIEVSVAGRVMLKRVMGKASFATLQDGSG--RIQLYVSKDDVGEEALEAF 101 (491)
T ss_pred CCCCCCcCccCHHHHHHHhccccchhhcccCcEEEEEEEEEEEecCCceEEEEEEcCCc--cEEEEEECCcCCHHHHHHH
Confidence 788999999999999887643 1112247799999999999999999999999996 49999987632 36667
Q ss_pred hccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccccC---hhhhhccccccCC-ChhhhHHHHHH
Q 012612 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVR 151 (460)
Q Consensus 76 ~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~---~~~~r~~r~l~~R-~~~~~~~~~~R 151 (460)
++ |+.||+|.|+|+|.+++++ ++||.++++++||+|.. |+|.+.++ .+...++||||+| ++.++++|++|
T Consensus 102 ~~--l~~g~~v~v~G~v~~t~~g--e~el~~~~~~vls~~~~--plP~~~~~~~~~~~r~r~R~lDl~~~~~~~~~~r~R 175 (491)
T PRK00484 102 KK--LDLGDIIGVEGTLFKTKTG--ELSVKATELTLLTKSLR--PLPDKFHGLTDVETRYRQRYVDLIVNPESRETFRKR 175 (491)
T ss_pred hc--CCCCCEEEEEEEEEEcCCC--cEEEEEeEEEEEeccCC--CCCcccccccchhhhccceeeehhcCHHHHHHHHHH
Confidence 77 9999999999999998765 89999999999999974 55555444 3444489999997 78999999999
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCC
Q 012612 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAEN 230 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~ 230 (460)
|+|++++|+||.++||+||+||+|+++.+++++++|.+ +.++++.++||+||||+||| ++++|++||||||||||||+
T Consensus 176 s~i~~~iR~f~~~~gF~EVeTPiL~~~~~Ga~a~pF~t-~~~~~~~~~yL~~Spql~lk~l~v~g~~rVfei~~~FR~E~ 254 (491)
T PRK00484 176 SKIISAIRRFLDNRGFLEVETPMLQPIAGGAAARPFIT-HHNALDIDLYLRIAPELYLKRLIVGGFERVYEIGRNFRNEG 254 (491)
T ss_pred HHHHHHHHHHHHHCCCEEEECCceeccCCCccceeeee-ccccCCCceEeccCHHHHHHHHHhccCCcEEEEecceecCC
Confidence 99999999999999999999999998766666789964 44899999999999999986 78899999999999999999
Q ss_pred CCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHH
Q 012612 231 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAI 310 (460)
Q Consensus 231 ~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~ 310 (460)
++ .||||||||||||++|+|++|+|+++|+||+++++.+.+++ .+.+.+.. ..++.||+++||.||+
T Consensus 255 ~~-~rH~pEFt~lE~e~a~~d~~d~m~~~E~li~~i~~~~~~~~--~i~~~~~~----------~~~~~pf~rity~eai 321 (491)
T PRK00484 255 ID-TRHNPEFTMLEFYQAYADYNDMMDLTEELIRHLAQAVLGTT--KVTYQGTE----------IDFGPPFKRLTMVDAI 321 (491)
T ss_pred CC-CCcCCceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCc--eEecCCEe----------ecCCCCceEEEHHHHH
Confidence 96 59999999999999999999999999999999999987653 23332210 0134588999999988
Q ss_pred HHHHH-----------------HccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccceee
Q 012612 311 ELLIK-----------------AKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAA 373 (460)
Q Consensus 311 ~~l~~-----------------~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~ 373 (460)
+.+.. .++.......+|..++..++.++.+ .+. +|+||+|||.+++|||++.++++++++|
T Consensus 322 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ve~-~~~-~P~Fi~dyP~~~~pf~k~~~~~~~~~~r 399 (491)
T PRK00484 322 KEYTGVDFDDMTDEEARALAKELGIEVEKSWGLGKLINELFEEFVEP-KLI-QPTFITDYPVEISPLAKRHREDPGLTER 399 (491)
T ss_pred HHHhCCCcccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhh-hcC-CcEEEECCChHHhhhhccCCCCCCeEEE
Confidence 76532 1111111112444455556665444 444 7999999999999999866667789999
Q ss_pred eecccCCceeeecHHHhhhhHHHHHHHHHH------cCCCcc-cH-HHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCc
Q 012612 374 MDMLVPRIGELIGGSQREERLEYLEGRLDE------LKLNRD-SY-WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENI 445 (460)
Q Consensus 374 fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~------~~~~~~-~~-~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~I 445 (460)
|||+++|+ ||+||++|.||++.|++++++ .|.++. .+ +|||+|++||||||||||||||||+|++||.+||
T Consensus 400 FdL~i~G~-Ei~ngy~El~dp~~q~~r~~~q~~~~~~~~~e~~~~d~~yl~a~~~G~PP~gG~GiGiDRLvm~ltg~~~I 478 (491)
T PRK00484 400 FELFIGGR-EIANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFMDEDFLRALEYGMPPTGGLGIGIDRLVMLLTDSPSI 478 (491)
T ss_pred EEEEECCE-EEecchhhhCCHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHCCCCCCCeEEEeHHHHHHHHhCCCcH
Confidence 99999997 999999999999999998863 243332 24 6999999999999999999999999999999999
Q ss_pred cccccccCCCC
Q 012612 446 RDAIPFPRTPG 456 (460)
Q Consensus 446 rdv~~FPr~~~ 456 (460)
|||++||+++.
T Consensus 479 rdvi~FP~~~~ 489 (491)
T PRK00484 479 RDVILFPLMRP 489 (491)
T ss_pred HhcccCCCCCC
Confidence 99999999875
|
|
| >PRK12445 lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-95 Score=762.98 Aligned_cols=429 Identities=20% Similarity=0.300 Sum_probs=351.6
Q ss_pred CCCccccceeeeccccCCccC--C--CCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc---cchh-h
Q 012612 3 SKVGEFRKKLKIVDVKGGPNE--G--LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYD-Q 74 (460)
Q Consensus 3 ~~~~~~~~~~~i~~l~~~~~~--~--~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~---~~~~-~ 74 (460)
|+.++|.++++++++.+.|++ + ....++.|+|+|||+++|.+||++|++|+|++| +||||++++. ..|. .
T Consensus 35 py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~Gk~~F~~lrD~~g--~iQ~~~~~~~~~~~~~~~~ 112 (505)
T PRK12445 35 AFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGG--RIQLYVARDSLPEGVYNDQ 112 (505)
T ss_pred CCCCCCcCccCHHHHHHHhhccCcchhhcCCCEEEEEEEEEEEecCCCcEEEEEEeCCc--cEEEEEECCccchhhHHHH
Confidence 888999999999999887643 1 123477899999999999999999999999986 5999998653 2354 3
Q ss_pred HhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccccCh---hhhhccccccCC-ChhhhHHHHH
Q 012612 75 VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR---EFLRTKAHLRPR-TNTFGAVARV 150 (460)
Q Consensus 75 ~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~~---~~~r~~r~l~~R-~~~~~~~~~~ 150 (460)
+++ |+.||+|.|+|++.+++++ ++||.++++++||+|. .|+|.+.++. +...++||||+| ++..+++|++
T Consensus 113 ~~~--l~~Gd~V~v~G~~~~t~~g--elel~~~~~~llsk~~--~plP~~~~~~~d~e~r~r~Ryldl~~n~~~r~~~r~ 186 (505)
T PRK12445 113 FKK--WDLGDIIGARGTLFKTQTG--ELSIHCTELRLLTKAL--RPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVV 186 (505)
T ss_pred Hhc--CCCCCEEEEEEEEEecCCC--cEEEEEeEEEEEecCC--CCCCcccccccChhhhhhhhhhhhhcCHHHHHHHHH
Confidence 566 9999999999999998865 8999999999999997 5666665543 444489999999 6899999999
Q ss_pred HHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccC
Q 012612 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAE 229 (460)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E 229 (460)
||+|+++||+||.++||+||+||+|++..+++++.+|. +++++++.++||+||||+||| |+++|++||||||||||||
T Consensus 187 Rs~i~~~iR~f~~~~gFiEVeTPiL~~~~gGa~a~pF~-t~~~~~~~~~yL~~SpELylKrlivgG~~rVfeIg~~FRnE 265 (505)
T PRK12445 187 RSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFI-THHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNE 265 (505)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCeeEecCCCCccccee-cccccCCcceeeecCHHHHHHHHHhccCCcEEEEehhccCC
Confidence 99999999999999999999999999876655667894 556899999999999999985 8899999999999999999
Q ss_pred CCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHH
Q 012612 230 NSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDA 309 (460)
Q Consensus 230 ~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea 309 (460)
++ +.||||||||||||++|+|++|+|+++|+||+++++.+.+.+... +.+.. + -+..||+++||.||
T Consensus 266 ~~-~~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~l~~~~~~~~~~~--~~~~~--------i--~~~~pf~rit~~ea 332 (505)
T PRK12445 266 GI-SVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVT--YGEHV--------F--DFGKPFEKLTMREA 332 (505)
T ss_pred CC-CCCcCcccceeeeeeecCCHHHHHHHHHHHHHHHHHHHhccccee--cCcee--------c--cCCCCceEEEHHHH
Confidence 99 899999999999999999999999999999999999987654321 11100 0 12347778888877
Q ss_pred HHHHHH-------------------HccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccc
Q 012612 310 IELLIK-------------------AKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRT 370 (460)
Q Consensus 310 ~~~l~~-------------------~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~ 370 (460)
++.+.. .|+.......+|..+ .+....++++.+. +|+||+|||.+++|||++.++++++
T Consensus 333 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~vE~~l~-~P~Fv~dyP~~~splak~~~~~p~~ 410 (505)
T PRK12445 333 IKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIV-TEIFDEVAEAHLI-QPTFITEYPAEVSPLARRNDVNPEI 410 (505)
T ss_pred HHHHhCCCCccccCCHHHHHHHHHHcCCCCCCCCCHHHHH-HHHHHHHHHhhcC-CCEEEECCCchhCcccccCCCCCCc
Confidence 766542 222211111122122 2333344555554 8999999999999999766666789
Q ss_pred eeeeecccCCceeeecHHHhhhhHHHHHHHHHH------cCCCcccH--HHHHHHHhcCCCCCcceeccHHHHHHHHcCC
Q 012612 371 VAAMDMLVPRIGELIGGSQREERLEYLEGRLDE------LKLNRDSY--WWYLDLRHYGSVPHAGFGLGFERLVQFATGV 442 (460)
Q Consensus 371 ~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~------~~~~~~~~--~~yl~~~~~G~pp~~G~giGidRL~m~l~~~ 442 (460)
++||||+++|+ ||+||++|.||+++|++++++ .|.++... +|||+|++||||||||||||||||+|++||.
T Consensus 411 ~~rFeL~i~G~-Ei~ng~~El~dp~eq~~rf~~q~~~~~~g~~e~~~~de~yl~al~yG~PP~gG~GiGiDRLvMlltg~ 489 (505)
T PRK12445 411 TDRFEFFIGGR-EIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNS 489 (505)
T ss_pred eEEEEEEeCCE-EEcccccccCCHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHcCCCCCCeEEEhHHHHHHHHcCC
Confidence 99999999996 999999999999999999874 36554432 7899999999999999999999999999999
Q ss_pred CCccccccccCCCC
Q 012612 443 ENIRDAIPFPRTPG 456 (460)
Q Consensus 443 ~~Irdv~~FPr~~~ 456 (460)
+|||||++||+++.
T Consensus 490 ~sIrdvi~FP~~~~ 503 (505)
T PRK12445 490 HTIRDVILFPAMRP 503 (505)
T ss_pred CchheEecCCCCCC
Confidence 99999999999864
|
|
| >COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-94 Score=729.27 Aligned_cols=411 Identities=26% Similarity=0.397 Sum_probs=339.3
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc--cchhhHhccCCCCCcEEE
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIW 87 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~--~~~~~~~~~~l~~g~~V~ 87 (460)
|+|+|.+|... ++|++|+++|||++.|++|+++|++|||.+|+ +|||++.+. ..|+.+.. |+.|++|.
T Consensus 2 Rt~~cg~l~~~------~vG~~V~L~GWV~r~Rd~GgliFiDLRDr~Gi--vQvv~~~~~~~~~~~~a~~--lr~E~vi~ 71 (585)
T COG0173 2 RTHYCGELRES------HVGQTVTLSGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPEDSPEAFEVASR--LRNEFVIQ 71 (585)
T ss_pred CceeccccCHH------HCCCEEEEEeeeeeccccCCeEEEEcccCCCe--EEEEECCccCHHHHHHHHh--cCceEEEE
Confidence 68999999875 89999999999999999999999999999987 999999852 34777888 99999999
Q ss_pred EEeeEeecCC-------CCceEEEEEeEEEEEecCCCCCCCCccc--cChhhhh-ccccccCCChhhhHHHHHHHHHHHH
Q 012612 88 IQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR--VSREFLR-TKAHLRPRTNTFGAVARVRNALAYA 157 (460)
Q Consensus 88 V~G~v~~~~~-------~~~~~El~~~~i~ils~~~~~~p~~~~~--~~~~~~r-~~r~l~~R~~~~~~~~~~Rs~i~~~ 157 (460)
|+|+|.+++. .++++||.+++|+|||+|.+ +|++..+ ...+.+| +|||||||++.++..+++||+++.+
T Consensus 72 V~G~V~~R~e~~~N~~l~TGeiEv~a~~i~vln~s~~-lPf~i~d~~~~~Ee~RLkYRyLDLRR~~m~~~l~lR~kv~~~ 150 (585)
T COG0173 72 VTGTVRARPEGTINPNLPTGEIEVLAEEIEVLNASKT-LPFQIEDETNASEEIRLKYRYLDLRRPEMQKNLKLRSKVTKA 150 (585)
T ss_pred EEEEEEecCccccCCCCCcceEEEEeeeEEEEecCCC-CCcCCCCCCCcchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 9999998865 35799999999999999976 5665443 4555666 9999999999999999999999999
Q ss_pred HHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCCCCCCCC
Q 012612 158 THKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRH 236 (460)
Q Consensus 158 iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~~~~~rH 236 (460)
+|+||+++||+||+||+|++|++||++| |.|+++.+.|+-+.|.||||+||| ||++||+|||||++|||+|+.+.+|+
T Consensus 151 iR~~ld~~gF~EiETPiLtkSTPEGARD-fLVPSRv~~G~FYALPQSPQlfKQLLMvsGfdRYyQIarCFRDEDlRaDRQ 229 (585)
T COG0173 151 IRNFLDDQGFLEIETPILTKSTPEGARD-FLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQ 229 (585)
T ss_pred HHHHHhhcCCeEeecCccccCCCccccc-cccccccCCCceeecCCCHHHHHHHHHHhcccceeeeeeeecccccccccC
Confidence 9999999999999999999999999999 889999888899999999999999 79999999999999999999999999
Q ss_pred CCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHH-----
Q 012612 237 LAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIE----- 311 (460)
Q Consensus 237 l~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~----- 311 (460)
|||||+|+||+|.+-+|+|+++|+|+.++++.+.+.. ++.||+|+||+||++
T Consensus 230 -PEFTQiD~EmSF~~~edv~~~~E~l~~~vf~~~~~i~----------------------l~~pFprmtY~eAm~~YGSD 286 (585)
T COG0173 230 -PEFTQIDLEMSFVDEEDVMELIEKLLRYVFKEVKGIE----------------------LKTPFPRMTYAEAMRRYGSD 286 (585)
T ss_pred -CcceeEeEEeecCCHHHHHHHHHHHHHHHHHHhcCCc----------------------cCCCcccccHHHHHHHhCCC
Confidence 9999999999999999999999999999999876432 112333333333322
Q ss_pred --------------------------------------------------------HHHHHccc---c---cc-----c-
Q 012612 312 --------------------------------------------------------LLIKAKKK---F---EF-----L- 323 (460)
Q Consensus 312 --------------------------------------------------------~l~~~~~~---~---~~-----~- 323 (460)
..+..|.+ + .. +
T Consensus 287 KPDlRf~lel~dvt~~~~~~~F~vF~~~~~~~~~v~ai~vp~~~~~sRk~id~~~~~ak~~gakGLa~ikv~~~~~~gpi 366 (585)
T COG0173 287 KPDLRFPLELIDVTDLFKDSEFKVFSNALANGGRVKAIVVPGGASLSRKQIDELTEFAKIYGAKGLAYIKVEEDGLKGPI 366 (585)
T ss_pred CCcccCCceehhHHHHhcCCCcceehhhhhcCCeEEEEEcCCccccCHHHHHHHHHHHHHcCCCceEEEEEecCCccchH
Confidence 11111100 0 00 0
Q ss_pred -----------------ccccc------c--------cchh-----hhcccccccccCccEEEEeCCCc-----------
Q 012612 324 -----------------VKWGC------D--------LQSE-----HERYLTEEAFGGCPVIVSDYPKE----------- 356 (460)
Q Consensus 324 -----------------~~~~~------~--------l~~~-----~e~~l~~~~~~~~p~~I~~fP~~----------- 356 (460)
.+-|+ + +... -+.-|.++- ...++||+|||..
T Consensus 367 ~kfl~e~~~~~l~~~~~~~~gD~iff~A~~~~~~~~~lGalR~~l~~~l~li~~~-~~~f~WVvDFPlfE~~ee~~~~~a 445 (585)
T COG0173 367 AKFLSEEILEELIERLGAEDGDIIFFVADKKKVVNKALGALRLKLGKELGLIDKD-QFKFLWVVDFPLFEWDEEEGRYVA 445 (585)
T ss_pred HHhcCHHHHHHHHHHhCCCCCCEEEEecCcHHHHHHHHHHHHHHHHHHhCCCCcc-cceEEEEEecCccCCccccCceec
Confidence 00000 0 0000 011111111 1379999999983
Q ss_pred -CccccccccCCc---------cceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcc----cHHHHHHHHhcCC
Q 012612 357 -IKAFYMRQNDDG---------RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWWYLDLRHYGS 422 (460)
Q Consensus 357 -~~pf~~~~~~~~---------~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~----~~~~yl~~~~~G~ 422 (460)
++||+++...+. -.+..|||++||+ ||+|||+|+|+++.|++.|+..|++++ .|+++|+|++||+
T Consensus 446 ~HHPFT~P~~~~~~~l~~~p~~~~a~aYDlVlNG~-ElggGSiRIh~~eiQ~~vF~~lg~~~eea~ekFGFll~Af~yGa 524 (585)
T COG0173 446 AHHPFTMPKPEDLELLEADPESVRARAYDLVLNGY-ELGGGSIRIHDPEIQEKVFEILGISPEEAEEKFGFLLEAFKYGA 524 (585)
T ss_pred ccCCCCCCCccchhhhhcCHHHhhhhhccEEeccE-eeccceeeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC
Confidence 789998865321 2467899999998 999999999999999999999999987 5789999999999
Q ss_pred CCCcceeccHHHHHHHHcCCCCccccccccCCCCC
Q 012612 423 VPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 457 (460)
Q Consensus 423 pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~ 457 (460)
|||||+|+|+|||+|+|+|.+||||||+||++.+.
T Consensus 525 PPHgGiA~GlDRlvmll~g~~sIReVIAFPKt~~a 559 (585)
T COG0173 525 PPHGGIAFGLDRLVMLLTGAESIRDVIAFPKTQQA 559 (585)
T ss_pred CCCcceeccHHHHHHHHcCCCchhheeecCCCccc
Confidence 99999999999999999999999999999998764
|
|
| >PTZ00417 lysine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-94 Score=757.65 Aligned_cols=443 Identities=16% Similarity=0.255 Sum_probs=374.2
Q ss_pred CCCccccceeeeccccCCccC---CCCCCCCEEEEEEEEeeeccCC-CeEEEEEEcCCCccceEEEEeCCc-----cchh
Q 012612 3 SKVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-----EGYD 73 (460)
Q Consensus 3 ~~~~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~GwV~~~R~~g-~~~Fv~lrD~~~~~~iQvv~~~~~-----~~~~ 73 (460)
|++++|.++++++++.+.|++ +....+..|+|+|||+++|.+| +++|++|+|.+| +||||++++. ..|.
T Consensus 103 pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G~k~~F~~L~d~~g--~iQv~~~~~~~~~~~~~~~ 180 (585)
T PTZ00417 103 PYPHKFERTITVPEFVEKYQDLASGEHLEDTILNVTGRIMRVSASGQKLRFFDLVGDGA--KIQVLANFAFHDHTKSNFA 180 (585)
T ss_pred CCCCCCcCCcCHHHHHHHhhccCccccccCCeEEEEEEEEeeecCCCCCEEEEEEeCCe--eEEEEEECCccCCCHHHHH
Confidence 788999999999999887753 1112345699999999999998 799999999876 5999998652 2354
Q ss_pred h-HhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccccChhhhhccccccCC-ChhhhHHHHHH
Q 012612 74 Q-VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPR-TNTFGAVARVR 151 (460)
Q Consensus 74 ~-~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~~~~~r~~r~l~~R-~~~~~~~~~~R 151 (460)
. .+. |+.||+|.|+|.+.+++++ ++||.++++++||+|..++|..-...+.+..-++||||+| ++..+++|++|
T Consensus 181 ~~~~~--l~~Gd~V~V~G~~~~t~~g--el~i~~~~i~llsk~l~~lP~~~g~~d~e~r~r~RyLdL~~n~~~~~ifr~R 256 (585)
T PTZ00417 181 ECYDK--IRRGDIVGIVGFPGKSKKG--ELSIFPKETIILSPCLHMLPMKYGLKDTEIRYRQRYLDLMINESTRSTFITR 256 (585)
T ss_pred HHHhc--CCCCCEEEEEeEEcCCCCc--eEEEEEEEEEEEecCCCCCCcccCCCCcccccccchhhhhcCHHHHHHHHHH
Confidence 4 456 9999999999999987755 8999999999999998656653112233444489999998 78999999999
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCC
Q 012612 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAEN 230 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~ 230 (460)
|+|+++||+||.++||+||+||+|+++.+++++.||. +++++++.++||++|||||+| |+++|++||||||||||||+
T Consensus 257 S~Ii~aiR~Ff~~rGFlEVeTPiL~~~~GGA~a~PF~-T~~n~~d~~lYLriSpEL~lKrLlvgG~~rVfeIgp~FRnE~ 335 (585)
T PTZ00417 257 TKIINYLRNFLNDRGFIEVETPTMNLVAGGANARPFI-THHNDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEG 335 (585)
T ss_pred HHHHHHHHHHHHHCCeEEEeCCeeeccCCcccceeEE-ecccCCCcceEEeecHHHHHHHHHHhCCCCEEEEcccccCCC
Confidence 9999999999999999999999999987666778885 566889999999999999985 88899999999999999999
Q ss_pred CCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCc------------cccccccccccchhHhhhhhhhc
Q 012612 231 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK------------EDMDFFNTWIEKGIIDRLSTVAE 298 (460)
Q Consensus 231 ~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~------------~~i~~~~~~~~~~~~~~l~~~~~ 298 (460)
++ .||||||||||||++|+||+|+|+++|+||++++..+.+... .++++..+|...++.+++++.++
T Consensus 336 ~~-~rHnpEFTmlE~y~ay~dy~dlM~l~E~Li~~v~~~v~g~~~~~~~~~g~~~~~~~i~~~~pf~rit~~ea~~~~~g 414 (585)
T PTZ00417 336 ID-NTHNPEFTSCEFYWAYADFYDLIKWSEDFFSQLVMHLFGTYKILYNKDGPEKDPIEIDFTPPYPKVSIVEELEKLTN 414 (585)
T ss_pred CC-CCccceeeeeeeeeecCCHHHHHHHHHHHHHHHHHHhcCcceeeecccccccccccccCCCCceeccHHHHHHHHhC
Confidence 95 699999999999999999999999999999999998875421 23455566766778888888888
Q ss_pred CCCcc-----cCHHHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccceee
Q 012612 299 RDFVQ-----LSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAA 373 (460)
Q Consensus 299 ~~~~~-----i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~ 373 (460)
.++.. .+++++++++++.|++++....|+..++.+++.++.+++.. .|+||+|||.+++|||+...+++++++|
T Consensus 415 ~~~~~~~~~~~~~~el~~~l~~~g~~~~~~~~~~~~l~~l~e~~vE~~l~~-~PtFI~dyP~~~sPLak~~~~dp~v~eR 493 (585)
T PTZ00417 415 TKLEQPFDSPETINKMINLIKENKIEMPNPPTAAKLLDQLASHFIENKYPN-KPFFIIEHPQIMSPLAKYHRSKPGLTER 493 (585)
T ss_pred CCccccccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhhCC-CcEEEECCChhhCchhhhcCCCCCeEEe
Confidence 66542 57899999999988766555567778888888888777653 6999999999999999766667789999
Q ss_pred eecccCCceeeecHHHhhhhHHHHHHHHH------HcCCCcccH---HHHHHHHhcCCCCCcceeccHHHHHHHHcCCCC
Q 012612 374 MDMLVPRIGELIGGSQREERLEYLEGRLD------ELKLNRDSY---WWYLDLRHYGSVPHAGFGLGFERLVQFATGVEN 444 (460)
Q Consensus 374 fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~------~~~~~~~~~---~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~ 444 (460)
||||++|+ ||+||+++.+|+.+|+++++ +.| +++.+ ++||+|++||||||||||||||||+|++||.+|
T Consensus 494 FELfi~G~-EiangysELnDp~eQr~Rf~~q~~~r~~g-~~e~~~~Dedfl~AleyGmPPtgG~GiGIDRLvMlltg~~s 571 (585)
T PTZ00417 494 LEMFICGK-EVLNAYTELNDPFKQKECFSAQQKDREKG-DAEAFQFDAAFCTSLEYGLPPTGGLGLGIDRITMFLTNKNC 571 (585)
T ss_pred EEeEECCE-EEccCcchhcCHHHHHHHHHHHHHHHHcC-CCcccccHHHHHHHHHcCCCCCceEEEcHHHHHHHHcCCcc
Confidence 99999997 99999999999999988664 334 44443 339999999999999999999999999999999
Q ss_pred ccccccccCCCC
Q 012612 445 IRDAIPFPRTPG 456 (460)
Q Consensus 445 Irdv~~FPr~~~ 456 (460)
||||++||+++.
T Consensus 572 IrdVi~FP~~r~ 583 (585)
T PTZ00417 572 IKDVILFPTMRP 583 (585)
T ss_pred hheeecCCCCCC
Confidence 999999999864
|
|
| >COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-94 Score=726.26 Aligned_cols=441 Identities=20% Similarity=0.315 Sum_probs=386.9
Q ss_pred CCCccccceeeeccccCCccCCC----CCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc---cchhh-
Q 012612 3 SKVGEFRKKLKIVDVKGGPNEGL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQ- 74 (460)
Q Consensus 3 ~~~~~~~~~~~i~~l~~~~~~~~----~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~---~~~~~- 74 (460)
|+++.|.++++++++...+.+.+ ......|+|+|||.++|.+||.+|++|.|.+| +||++++++. ..|+.
T Consensus 31 ~yp~~~~~~~~~~~l~~~~~~~~~~el~~~~~~v~vAGRi~~~R~~GK~~F~~i~d~~g--kiQ~yi~k~~~~~~~~~~~ 108 (502)
T COG1190 31 PYPNDFERTHTSADLREKYADKTKEELEALNIEVSVAGRIMTIRNMGKASFADLQDGSG--KIQLYVNKDEVGEEVFEAL 108 (502)
T ss_pred CCCCcCcccccHHHHHHHHhccchhhhhhccceeEEecceeeecccCceeEEEEecCCc--eEEEEEeccccchhhHHHH
Confidence 78899999999999998775311 12223499999999999999999999999996 5999999875 33654
Q ss_pred HhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccccChhh--hh-ccccccCCC-hhhhHHHHH
Q 012612 75 VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREF--LR-TKAHLRPRT-NTFGAVARV 150 (460)
Q Consensus 75 ~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~~~~--~r-~~r~l~~R~-~~~~~~~~~ 150 (460)
.+. ++.||+|+|+|.+.+|+++ +++|.|+++++|+||+ .|+|+|.|++.+ .| +.||+|+-. +..+..|..
T Consensus 109 ~~~--~dlGDiigv~G~~~~T~~G--elSv~v~~~~lLsKsL--~pLPeK~hgL~D~E~RyR~RylDLi~N~e~r~~f~~ 182 (502)
T COG1190 109 FKK--LDLGDIIGVEGPLFKTKTG--ELSVSVEELRLLSKSL--RPLPEKFHGLTDKEIRYRQRYLDLIVNPESRQTFIK 182 (502)
T ss_pred Hhc--cccCCEEeeeeeeeecCCC--ceEEEEEEEeeecccC--CCCChhhcCCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 455 9999999999999999876 8999999999999998 688899997633 22 789999885 589999999
Q ss_pred HHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHH-HHHhcCCCceEEEecccccC
Q 012612 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNA-ETYATALSNVYTFGPTFRAE 229 (460)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~~g~~rvfeI~~~FR~E 229 (460)
||+|+++||+||+++||+||+||+|+..++++++.|| +|++|.++.++|||+|||||| +|+++|++|||||+++||||
T Consensus 183 Rs~ii~~iR~fl~~~gFlEVETP~lq~i~GGA~ArPF-~ThhNald~dlyLRIApELyLKRliVGG~erVfEIgr~FRNE 261 (502)
T COG1190 183 RSKIIRAIREFLDDRGFLEVETPMLQPIPGGAAARPF-ITHHNALDMDLYLRIAPELYLKRLIVGGFERVFEIGRNFRNE 261 (502)
T ss_pred HHHHHHHHHHHHHHCCCeEeccccccccCCCcccccc-eeeecccCCceEEeeccHHHHHHHHhcCchhheeeccccccC
Confidence 9999999999999999999999999999999999999 578899999999999999997 59999999999999999999
Q ss_pred CCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccC-----ccccccccccccchhHhhhhhhhcCC-Ccc
Q 012612 230 NSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC-----KEDMDFFNTWIEKGIIDRLSTVAERD-FVQ 303 (460)
Q Consensus 230 ~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~-----~~~i~~~~~~~~~~~~~~l~~~~~~~-~~~ 303 (460)
+. +.||||||||||+|+||+||+|+|+++|+||+++++.+.+.. ...+++.++|.+..+.+.+++..+.. +..
T Consensus 262 Gi-d~tHNPEFTmlE~Y~AYaDy~D~m~ltE~Li~~~a~~v~gt~~v~y~~~~id~~~pf~ri~m~dal~e~~g~~~~~~ 340 (502)
T COG1190 262 GI-DTTHNPEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTTKVTYGGQEIDFSKPFKRITMVDALKEYLGVDFDDL 340 (502)
T ss_pred CC-ccccCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCeEEEECCEeEecCCCeeeeehHHHHHHHhCcccccc
Confidence 99 689999999999999999999999999999999999998743 24588888999999999999988874 566
Q ss_pred cCHHHHHHHHHHHcccccccc--ccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccceeeeecccCCc
Q 012612 304 LSYTDAIELLIKAKKKFEFLV--KWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRI 381 (460)
Q Consensus 304 i~~~ea~~~l~~~~~~~~~~~--~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~fDl~~~G~ 381 (460)
.+.++|.++++++++...... .+|..++..+|..+.+++. +|+||+|||.++||++++.+++++.++||||+++|.
T Consensus 341 ~~~e~~~~~ak~~~i~~~~~~~~~~g~ll~~lFe~~vE~~li--qPTFv~d~P~eiSPLak~~~~~p~~teRFElfi~g~ 418 (502)
T COG1190 341 FDDEEAKELAKKHGIEVEKYGTWGLGHLLNELFEELVEAKLI--QPTFVTDHPVEISPLAKRHRSNPGLTERFELFIGGK 418 (502)
T ss_pred CCHHHHHHHHHHhCCCcCccccccHHHHHHHHHHHHhhhhhc--CCceeecCccccCccccCCCCCcchhhhheeeeccE
Confidence 788899999999887654332 2556788888887666554 799999999999999988888889999999999997
Q ss_pred eeeecHHHhhhhHHHHHHHHHH------cCCCccc-H-HHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccC
Q 012612 382 GELIGGSQREERLEYLEGRLDE------LKLNRDS-Y-WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 453 (460)
Q Consensus 382 ~Ei~~g~~r~~~~~~~~~~~~~------~~~~~~~-~-~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr 453 (460)
|||||+.+.+|+..|.++|.+ .|-+.+. + ++|++|++|||||+||+|||||||+|+|||+.|||||++||.
T Consensus 419 -EiaNaysELNDP~dQ~~RF~~Q~~~k~~Gddea~~~Dedfv~ALeyGmPPTgG~GiGIDRLvMllT~~~sIRdVilFP~ 497 (502)
T COG1190 419 -EIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDEDFVEALEYGMPPTGGLGIGIDRLVMLLTNSPSIRDVILFPA 497 (502)
T ss_pred -EeeeccchhcCHHHHHHHHHHHHHHHHcCCccccccCHHHHHHHhcCCCCCCCccccHHHHHHHHcCCCchhheecccc
Confidence 999999999999999999864 3444332 2 679999999999999999999999999999999999999997
Q ss_pred CCC
Q 012612 454 TPG 456 (460)
Q Consensus 454 ~~~ 456 (460)
...
T Consensus 498 mr~ 500 (502)
T COG1190 498 MRP 500 (502)
T ss_pred cCC
Confidence 653
|
|
| >PTZ00385 lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-93 Score=750.42 Aligned_cols=442 Identities=16% Similarity=0.228 Sum_probs=352.4
Q ss_pred CCccccceeeeccccCCccC---CCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc----chhhH-
Q 012612 4 KVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE----GYDQV- 75 (460)
Q Consensus 4 ~~~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~----~~~~~- 75 (460)
++++|.+++++++|.+.|++ +....++.|+|+|||+++|.+||++|++|||++| .||||++++.. .+..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrV~~~R~~Gk~~F~~LrD~~G--~IQvv~~~~~~~~~~~~~~~~ 156 (659)
T PTZ00385 79 AYSSFRGITPISEVRERYGYLASGDRAAQATVRVAGRVTSVRDIGKIIFVTIRSNGN--ELQVVGQVGEHFTREDLKKLK 156 (659)
T ss_pred ccccCcccccHHHHHHHhhccccccccCCCEEEEEEEEEeeeccCCeEEEEEEECCc--eEEEEEECCccCCHHHHHHHH
Confidence 45789999999999888753 1122355799999999999999999999999996 59999987642 24444
Q ss_pred hccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCC-CCCC-C--cccc---ChhhhhccccccCC-ChhhhHH
Q 012612 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDP-SYPI-Q--KKRV---SREFLRTKAHLRPR-TNTFGAV 147 (460)
Q Consensus 76 ~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~-~~p~-~--~~~~---~~~~~r~~r~l~~R-~~~~~~~ 147 (460)
+. |+.||+|.|+|+|.+++++ ++||.++++++||++.. ..|+ + .+.+ +.+...++||||+| ++.++++
T Consensus 157 ~~--l~~gdiV~V~G~v~~t~~G--eleI~~~~i~lLska~~~~~~~~p~~~k~~~~~d~e~R~r~RyLDL~~n~~~~~i 232 (659)
T PTZ00385 157 VS--LRVGDIIGADGVPCRMQRG--ELSVAASRMLILSPYVCTDQVVCPNLRGFTVLQDNDVKYRYRFTDMMTNPCVIET 232 (659)
T ss_pred hC--CCCCCEEEEEEEEEecCCc--eEEEEeeEEEEechhhhccccCCCCCccccccCChhhhcccceeeeecCHHHHHH
Confidence 45 9999999999999998754 89999999999999642 1222 2 2333 45666699999996 7789999
Q ss_pred HHHHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEeccc
Q 012612 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTF 226 (460)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~F 226 (460)
|++||+|+++||+||.++||+||+||+|+++++++++.+|.+ ++++++.++||+||||+||| |+++|++|||||||||
T Consensus 233 fr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~~ga~a~pF~t-~~n~~~~~~yL~~SPELylKrLivgG~erVyeIg~~F 311 (659)
T PTZ00385 233 IKKRHVMLQALRDYFNERNFVEVETPVLHTVASGANAKSFVT-HHNANAMDLFLRVAPELHLKQCIVGGMERIYEIGKVF 311 (659)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEeeCCEeeccCCCCCccceEe-ecccCCCCEEecCChHHHHHHHhhcccCCEEEEecee
Confidence 999999999999999999999999999999999999999964 45788999999999999986 8889999999999999
Q ss_pred ccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCcc------------ccccccccccchhHhhhh
Q 012612 227 RAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE------------DMDFFNTWIEKGIIDRLS 294 (460)
Q Consensus 227 R~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~------------~i~~~~~~~~~~~~~~l~ 294 (460)
|||+++ .||||||||||||++|.|++++|+++|+||++++..+.+...- ++++..+|.+..+.+.+.
T Consensus 312 RnE~~~-~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~~~~~v~g~~~~~~~~~~~~g~~~~i~~~~Pf~Rit~~d~~~ 390 (659)
T PTZ00385 312 RNEDAD-RSHNPEFTSCEFYAAYHTYEDLMPMTEDIFRQLAMRVNGTTVVQIYPENAHGNPVTVDLGKPFRRVSVYDEIQ 390 (659)
T ss_pred cCCCCC-CCccccccceeeeeecCCHHHHHHHHHHHHHHHHHHhcCCeeEEeeccccCCCcccccCCCCceEEeHHHHHH
Confidence 999995 8999999999999999999999999999999999998764321 122222333334444444
Q ss_pred hhhcCCCcc---c-CHHHH---HHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCC
Q 012612 295 TVAERDFVQ---L-SYTDA---IELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD 367 (460)
Q Consensus 295 ~~~~~~~~~---i-~~~ea---~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~ 367 (460)
+.+|.+++. + +.+++ ..++++.|++++....+|..++..++.++.+.+ . +|+||+|||.+++||++...++
T Consensus 391 e~~G~d~~~~~dl~~~~e~~~~~~~~~~~gi~~~~~~~~g~~~~~lfe~~ve~~l-~-qPtFI~dyP~e~sPLak~~~~d 468 (659)
T PTZ00385 391 RMSGVEFPPPNELNTPKGIAYMSVVMLRYNIPLPPVRTAAKMFEKLIDFFITDRV-V-EPTFVMDHPLFMSPLAKEQVSR 468 (659)
T ss_pred HHhCCCCCccccCCCHHHHHHHHHHHHHcCCCCCcccchhHHHHHHHHHHHHHhh-C-CcEEEeCCccccCcccccCCCC
Confidence 444433321 1 11111 122333344333222334455666677666654 4 8999999999999998765567
Q ss_pred ccceeeeecccCCceeeecHHHhhhhHHHHHHHHH-----HcCCCcccH---HHHHHHHhcCCCCCcceeccHHHHHHHH
Q 012612 368 GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD-----ELKLNRDSY---WWYLDLRHYGSVPHAGFGLGFERLVQFA 439 (460)
Q Consensus 368 ~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~-----~~~~~~~~~---~~yl~~~~~G~pp~~G~giGidRL~m~l 439 (460)
+++++|||||++|+ ||+||++|+||+.+|+++++ ..+.+++.+ +|||+|++||||||||||||||||+|+|
T Consensus 469 p~~teRFELfi~G~-EiaNGysELnDp~eQr~Rfe~q~~~k~~gd~ea~~~DedfL~AleyGmPPtgG~GIGIDRLvMll 547 (659)
T PTZ00385 469 PGLAERFELFVNGI-EYCNAYSELNDPHEQYHRFQQQLVDRQGGDEEAMPLDETFLKSLQVGLPPTAGWGMGIDRALMLL 547 (659)
T ss_pred CCeEEEEEEEeCCe-EeeecccccCCHHHHHHHHHHHHHHHhcCCchhhccHHHHHHHHHcCCCCCCceEEcHHHHHHHH
Confidence 78999999999997 99999999999999999993 345566655 8899999999999999999999999999
Q ss_pred cCCCCccccccccCCCC
Q 012612 440 TGVENIRDAIPFPRTPG 456 (460)
Q Consensus 440 ~~~~~Irdv~~FPr~~~ 456 (460)
||.+|||||++||....
T Consensus 548 tg~~sIReVilFP~mr~ 564 (659)
T PTZ00385 548 TNSSNIRDGIIFPLLRQ 564 (659)
T ss_pred cCCcchhheecCccccc
Confidence 99999999999998764
|
|
| >TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-92 Score=739.08 Aligned_cols=429 Identities=23% Similarity=0.349 Sum_probs=335.4
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEE
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (460)
+++++.++... +.|+.|+|+|||+++|.+|+++|++|||++|. +|||++++...++.++. |+.||+|.|+
T Consensus 2 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~Gkl~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~--L~~esvV~V~ 71 (583)
T TIGR00459 2 RTHYCGQLRTE------HLGQTVTLAGWVNRRRDLGGLIFIDLRDRSGI--VQVVCDPDADALKLAKG--LRNEDVVQVK 71 (583)
T ss_pred CceeHhhcchh------hCCCEEEEEEEEEEEEcCCCcEEEEEEeCCcc--EEEEEeCCHHHHHHHhc--CCCCCEEEEE
Confidence 57889999764 78999999999999999999999999999974 99999876444666777 9999999999
Q ss_pred eeEeecC-------CCCceEEEEEeEEEEEecCCCCCCCCcc-ccChhhhh-ccccccCCChhhhHHHHHHHHHHHHHHH
Q 012612 90 GNVVPSQ-------GSKQKVELKVNKIVLVGKSDPSYPIQKK-RVSREFLR-TKAHLRPRTNTFGAVARVRNALAYATHK 160 (460)
Q Consensus 90 G~v~~~~-------~~~~~~El~~~~i~ils~~~~~~p~~~~-~~~~~~~r-~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ 160 (460)
|+|.+++ ..++++||.++++++||+|. .+|++.. .+..+.+| ++||||+|++.++++|++||+|++++|+
T Consensus 72 G~v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~-~~P~~~~~~~~~~~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~~iR~ 150 (583)
T TIGR00459 72 GKVSARPEGNINRNLDTGEIEILAESITLLNKSK-TPPLIIEKTDAEEEVRLKYRYLDLRRPEMQQRLKLRHKVTKAVRN 150 (583)
T ss_pred EEEEeCCccccCccCCCCcEEEEEeEEEEeecCC-CCCCcccccccchhhhcccceEEcCCHHHHHHHHHHHHHHHHHHH
Confidence 9999765 34678999999999999996 4676543 23445555 8999999999999999999999999999
Q ss_pred hhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCCCCCCCCCCc
Q 012612 161 FFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAE 239 (460)
Q Consensus 161 ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~~~~~rHl~E 239 (460)
||.++||+||+||+|+++++||+++ |.+++..+.+..++|+||||+||| ||++|++||||||||||||+++++|| ||
T Consensus 151 ff~~~gFiEVeTP~L~~s~~eGar~-f~vp~~~~~~~~y~L~qSpQlykq~l~v~G~ervfqI~~~FR~E~~~t~r~-pE 228 (583)
T TIGR00459 151 FLDQQGFLEIETPMLTKSTPEGARD-YLVPSRVHKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQ-PE 228 (583)
T ss_pred HHHHCCCEEEECCeeccCCCCCCcc-eeeeeecCCCceeecCCCHHHHHHHHHhcccCcEEEEcceeeCCCCCCCCC-cc
Confidence 9999999999999999999999887 766543223334559999999998 78999999999999999999998888 99
Q ss_pred cceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhh--------------------c-
Q 012612 240 FWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA--------------------E- 298 (460)
Q Consensus 240 Ft~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~--------------------~- 298 (460)
||||||||+|+|++|+|+++|+||+++++.+.+.. +..+|.+..+.++++++- +
T Consensus 229 FT~le~E~af~d~~dvm~~~E~li~~v~~~v~~~~-----~~~pf~r~ty~ea~~~yGsDkPDlR~~~~~~d~~~~~~~~ 303 (583)
T TIGR00459 229 FTQIDMEMSFMTQEDVMELIEKLVSHVFLEVKGID-----LKKPFPVMTYAEAMERYGSDKPDLRFPLELIDVTDLFKDS 303 (583)
T ss_pred cCcceeeecCCCHHHHHHHHHHHHHHHHHHHhCCC-----CCCCceEEEHHHHHHHHCCCCCccccCcccccHHHhhccC
Confidence 99999999999999999999999999999886521 111121111112111110 0
Q ss_pred ------------------------CCCcccCHHHHHHHHHHHccc------cccc-c----------------------c
Q 012612 299 ------------------------RDFVQLSYTDAIELLIKAKKK------FEFL-V----------------------K 325 (460)
Q Consensus 299 ------------------------~~~~~i~~~ea~~~l~~~~~~------~~~~-~----------------------~ 325 (460)
.++.+-..++..++.++.|.+ .... . +
T Consensus 304 ~f~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (583)
T TIGR00459 304 EFKVFSNLINDGGRVKAIRVPGGWAELSRKSIKELRKFAKEYGAKGLAYLKVNEDGINSPIKKFLDEKKGKILLERTDAQ 383 (583)
T ss_pred CcchhhhhhccCCeEEEEEecCCcCccCHhHHHHHHHHHHHcCCCcceEEEEcCCcCCCchhhhcCHHHHHHHHHHhCCC
Confidence 011122233333444443322 1110 0 0
Q ss_pred cccc--------------cch----hhh-cccccccccCccEEEEeCCCc-----------CccccccccCCcc------
Q 012612 326 WGCD--------------LQS----EHE-RYLTEEAFGGCPVIVSDYPKE-----------IKAFYMRQNDDGR------ 369 (460)
Q Consensus 326 ~~~~--------------l~~----~~e-~~l~~~~~~~~p~~I~~fP~~-----------~~pf~~~~~~~~~------ 369 (460)
.|+. +.. ..+ .-++++-. .+|+||+|||.. ++||+++..+|..
T Consensus 384 ~gd~~~~~a~~~~~~~~~lG~lr~~l~~~~~l~~~~~-~~~~wV~dfPlfe~~~~~~~~a~hhPfT~p~~~d~~~l~~~p 462 (583)
T TIGR00459 384 NGDILLFGAGSKKIVLDALGALRLKLGKDLGLVDPDL-FSFLWVVDFPMFEKDKEGRLCAAHHPFTMPKDEDLENLEAAP 462 (583)
T ss_pred CCCEEEEecCcchhHHHHHHHHHHHHHHHcCCcCCCC-ceEEEEEeCCCccccCCCceeeeECCCCCCCCCChhhhhcCh
Confidence 0000 000 000 01222211 279999999997 9999987655433
Q ss_pred ---ceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcc----cHHHHHHHHhcCCCCCcceeccHHHHHHHHcCC
Q 012612 370 ---TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGV 442 (460)
Q Consensus 370 ---~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~----~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~ 442 (460)
.+++|||++||+ ||+|||.|+||++.|+++|+.+|++++ .+++||+|++||+|||||+|+|+|||+|+|||.
T Consensus 463 ~~~~~~~yDLvlnG~-ElggGs~rihd~~~Q~~~f~~l~~~~ee~~~~f~~ll~Al~yG~PPhgG~alG~DRlvmlLt~~ 541 (583)
T TIGR00459 463 EEALAEAYDLVLNGV-ELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYGTPPHAGFALGLDRLMMLLTGT 541 (583)
T ss_pred hhhhhheeeEEEece-EecceeEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCcCceeccHHHHHHHHcCC
Confidence 688999999998 999999999999999999999999876 379999999999999999999999999999999
Q ss_pred CCccccccccCCCCCc
Q 012612 443 ENIRDAIPFPRTPGSV 458 (460)
Q Consensus 443 ~~Irdv~~FPr~~~~~ 458 (460)
+||||||+||++.+..
T Consensus 542 ~sIRDVIaFPKt~~g~ 557 (583)
T TIGR00459 542 DNIRDVIAFPKTTAAA 557 (583)
T ss_pred CchhheeecCCCCCCc
Confidence 9999999999988653
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences. |
| >PRK02983 lysS lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-89 Score=767.01 Aligned_cols=428 Identities=18% Similarity=0.229 Sum_probs=350.7
Q ss_pred CCCCccccceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc---chhhH-hc
Q 012612 2 GSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQV-KS 77 (460)
Q Consensus 2 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~---~~~~~-~~ 77 (460)
-|+.++|.++++++|+.+. ..+++|+|+|||+++|.+||++|++|+|++| +||||++++.. .++.+ +.
T Consensus 630 ~pyp~~~~~~~~~~~~~~~------~~~~~V~v~Grv~~~R~~G~~~F~~lrD~~g--~iQ~v~~~~~~~~~~~~~~~~~ 701 (1094)
T PRK02983 630 DPYPVGVPPTHTVAEALDA------PTGEEVSVSGRVLRIRDYGGVLFADLRDWSG--ELQVLLDASRLEQGSLADFRAA 701 (1094)
T ss_pred CCCCCCCcCccCHHHHHHh------cCCCEEEEEEEEEEEeeCCCeEEEEEEeCCe--eEEEEEECCccchhhHHHHHhc
Confidence 3888999999999999764 6788999999999999999999999999996 59999987642 24443 44
Q ss_pred cCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccccCh---hhhhccccccCC-ChhhhHHHHHHHH
Q 012612 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR---EFLRTKAHLRPR-TNTFGAVARVRNA 153 (460)
Q Consensus 78 ~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~~---~~~r~~r~l~~R-~~~~~~~~~~Rs~ 153 (460)
|+.||+|.|+|++.+++++ ++||.+++|+++++|. .|+|++.+++ +...++||||+| ++.++++|++||+
T Consensus 702 --l~~gd~V~v~G~v~~t~~g--e~ei~~~~i~ll~k~~--~plP~k~~~~~d~e~R~r~R~lDL~~n~~~~~~~r~Rs~ 775 (1094)
T PRK02983 702 --VDLGDLVEVTGTMGTSRNG--TLSLLVTSWRLAGKCL--RPLPDKWKGLTDPEARVRQRYLDLAVNPEARDLLRARSA 775 (1094)
T ss_pred --CCCCCEEEEEEEEEEcCCC--CEEEEEeEEEEEeccC--cCCCCccccCCChhhcchhhhhhhhcCHHHHHHHHHHHH
Confidence 9999999999999998865 7999999999999997 5666665543 333489999996 6899999999999
Q ss_pred HHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCCCC
Q 012612 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSN 232 (460)
Q Consensus 154 i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~~~ 232 (460)
|+++||+||.++||+||+||+|+++.+++++++|.+ ++++++.++||+||||+||| |+++|++||||||||||||+++
T Consensus 776 i~~~iR~fl~~~gFlEVeTPiL~~~~gGa~a~pF~t-~~~~~~~~~yLriSPELylKrLivgG~erVFEIg~~FRnE~~~ 854 (1094)
T PRK02983 776 VVRAVRETLVARGFLEVETPILQQVHGGANARPFVT-HINAYDMDLYLRIAPELYLKRLCVGGVERVFELGRNFRNEGVD 854 (1094)
T ss_pred HHHHHHHHHHHCCCEEEeCCEeeccCCCcccceeEe-eecCCCccchhhcChHHHHHHHHhcccCceEEEcceecCCCCC
Confidence 999999999999999999999999988888899964 55899999999999999986 8889999999999999999995
Q ss_pred CCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHH
Q 012612 233 TSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIEL 312 (460)
Q Consensus 233 ~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~ 312 (460)
.||||||||||+|++|.||+|+|+++|+||+++++.+.+... +.+.+... ...+..++.||+++||.||++.
T Consensus 855 -~rHnpEFTmLE~y~a~~dy~d~m~l~E~li~~i~~~v~~~~~--~~~~~~~~-----~~~~i~~~~pf~rit~~eai~~ 926 (1094)
T PRK02983 855 -ATHNPEFTLLEAYQAHADYDTMRDLTRELIQNAAQAAHGAPV--VMRPDGDG-----VLEPVDISGPWPVVTVHDAVSE 926 (1094)
T ss_pred -CCccccccchhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCcE--EeeCCccc-----cccccccCCCceEEEHHHHHHH
Confidence 699999999999999999999999999999999999875432 11111000 0000113457888888887753
Q ss_pred H------------------HHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccceeee
Q 012612 313 L------------------IKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAM 374 (460)
Q Consensus 313 l------------------~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~f 374 (460)
. ++.+++.+....+|..++..++.+ +++.+. +|+||+|||.+++|||++.+++++.++||
T Consensus 927 ~~g~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~l~~~l~~~~-ve~~~~-~P~Fv~dyP~~~spla~~~~~~p~~~erF 1004 (1094)
T PRK02983 927 ALGEEIDPDTPLAELRKLCDAAGIPYRTDWDAGAVVLELYEHL-VEDRTT-FPTFYTDFPTSVSPLTRPHRSDPGLAERW 1004 (1094)
T ss_pred HhCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHH-HHhhcC-CCEEEECCCcccccccccCCCCCCeeEEE
Confidence 2 222332221111222233344444 444444 89999999999999998776777899999
Q ss_pred ecccCCceeeecHHHhhhhHHHHHHHHHH-----cCCCcccH---HHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCcc
Q 012612 375 DMLVPRIGELIGGSQREERLEYLEGRLDE-----LKLNRDSY---WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIR 446 (460)
Q Consensus 375 Dl~~~G~~Ei~~g~~r~~~~~~~~~~~~~-----~~~~~~~~---~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Ir 446 (460)
||+++|+ ||+||+++.||+.+|++++++ .+.|++.+ +|||+|++||||||||||||||||+|++||. |||
T Consensus 1005 dL~i~G~-Ei~ng~~El~Dp~eq~~r~~~q~~~~~~~d~e~~~~De~yl~al~yGmPP~gG~GiGiDRLvM~ltg~-sIR 1082 (1094)
T PRK02983 1005 DLVAWGV-ELGTAYSELTDPVEQRRRLTEQSLLAAGGDPEAMELDEDFLQALEYAMPPTGGLGMGVDRLVMLLTGR-SIR 1082 (1094)
T ss_pred EEEECCE-EEeccccccCCHHHHHHHHHHHHHHHhCCChhhccccHHHHHHHHcCCCCCCeEEeeHHHHHHHHhCC-Chh
Confidence 9999997 999999999999999777754 45677766 6899999999999999999999999999996 999
Q ss_pred ccccccCCCC
Q 012612 447 DAIPFPRTPG 456 (460)
Q Consensus 447 dv~~FPr~~~ 456 (460)
||++||+...
T Consensus 1083 dvi~FP~~k~ 1092 (1094)
T PRK02983 1083 ETLPFPLVKP 1092 (1094)
T ss_pred eEecCCcCCC
Confidence 9999999764
|
|
| >PLN02903 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-88 Score=712.56 Aligned_cols=435 Identities=22% Similarity=0.310 Sum_probs=326.3
Q ss_pred cceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc--cchhhHhccCCCCCcEE
Q 012612 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASI 86 (460)
Q Consensus 9 ~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~--~~~~~~~~~~l~~g~~V 86 (460)
.++|+|.+|... +.|++|+|+|||+++|.+|+++|++|||++|. +|||++.+. ..++.++. |+.||+|
T Consensus 58 ~rt~~cg~l~~~------~~gk~V~l~GWV~~~R~~G~l~FidLRD~~G~--iQvV~~~~~~~~~~~~~~~--L~~esvV 127 (652)
T PLN02903 58 SRSHLCGALSVN------DVGSRVTLCGWVDLHRDMGGLTFLDVRDHTGI--VQVVTLPDEFPEAHRTANR--LRNEYVV 127 (652)
T ss_pred cCCCchhhcchh------hCCCEEEEEEEEEEEecCCCcEEEEEEcCCcc--EEEEEeCCccHHHHHHHhc--CCCCCEE
Confidence 467888888774 88999999999999999999999999999975 999998653 22555677 9999999
Q ss_pred EEEeeEeecC-------CCCceEEEEEeEEEEEecCCCCCCCCcc-------ccChhhhhccccccCCChhhhHHHHHHH
Q 012612 87 WIQGNVVPSQ-------GSKQKVELKVNKIVLVGKSDPSYPIQKK-------RVSREFLRTKAHLRPRTNTFGAVARVRN 152 (460)
Q Consensus 87 ~V~G~v~~~~-------~~~~~~El~~~~i~ils~~~~~~p~~~~-------~~~~~~~r~~r~l~~R~~~~~~~~~~Rs 152 (460)
.|+|+|..++ ..++++||.+++++|||+|..++|++.. ..+.+..++|||||+|++.++++|++||
T Consensus 128 ~V~G~V~~r~~~~~n~~~~tGeiEl~~~~i~VL~~a~~~lPf~i~~~~~~~~~~~ee~Rl~~RyLDLR~~~~q~~lr~Rs 207 (652)
T PLN02903 128 AVEGTVRSRPQESPNKKMKTGSVEVVAESVDILNVVTKSLPFLVTTADEQKDSIKEEVRLRYRVLDLRRPQMNANLRLRH 207 (652)
T ss_pred EEEEEEEeCCCcCcCCCCCCCCEEEEEeEEEEEecCCCCCCccccccccccccCChhhhhccceeecCCHHHHHHHHHHH
Confidence 9999999763 1246899999999999999655665432 2355666699999999999999999999
Q ss_pred HHHHHHHHhhhh-CCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCC
Q 012612 153 ALAYATHKFFQE-NGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAEN 230 (460)
Q Consensus 153 ~i~~~iR~ff~~-~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~ 230 (460)
++++++|+||.+ +||+||+||+|+++++||+++.| +.+....+..+||+||||+||| +|++|++||||||||||||+
T Consensus 208 ~i~~~iR~fl~~~~gFiEVeTPiL~~st~eGardf~-v~~~~~~g~~y~L~qSPQlykQ~Lm~~G~~RvFqIa~~FR~E~ 286 (652)
T PLN02903 208 RVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDYL-VPSRVQPGTFYALPQSPQLFKQMLMVSGFDRYYQIARCFRDED 286 (652)
T ss_pred HHHHHHHHHHHhcCCeEEEECCeeccCCCCCCcccE-EeeecCCCcccccCCCHHHHHHHHHhccCCcEEEEehhhccCC
Confidence 999999999997 99999999999999999998844 4432233667789999999998 78899999999999999999
Q ss_pred CCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCc----cccccccccc-----cc---------hhHhh
Q 012612 231 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK----EDMDFFNTWI-----EK---------GIIDR 292 (460)
Q Consensus 231 ~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~----~~i~~~~~~~-----~~---------~~~~~ 292 (460)
++++|| ||||||||||+|.|++|+|+++|+||+++++.+.+... ..+.|...+. .+ ++.+.
T Consensus 287 ~~t~Rh-pEFTqLE~E~sf~d~~dvm~~~E~li~~v~~~~~~~~~~~PF~rity~eA~~~ygsDKPDlRf~~~l~dv~~~ 365 (652)
T PLN02903 287 LRADRQ-PEFTQLDMELAFTPLEDMLKLNEDLIRQVFKEIKGVQLPNPFPRLTYAEAMSKYGSDKPDLRYGLELVDVSDV 365 (652)
T ss_pred CCCCcc-cceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEHHHHHHHHcCCCCcccCCceeeEhHHh
Confidence 998888 99999999999999999999999999999987764210 1111100000 00 00000
Q ss_pred h--------hhhh------------c-CCCcccCHH---HHHHHHHHHc---cc---cccc--c----------------
Q 012612 293 L--------STVA------------E-RDFVQLSYT---DAIELLIKAK---KK---FEFL--V---------------- 324 (460)
Q Consensus 293 l--------~~~~------------~-~~~~~i~~~---ea~~~l~~~~---~~---~~~~--~---------------- 324 (460)
+ ...+ + ..+.+-... +.+....+.| .. .... .
T Consensus 366 ~~~~~f~~f~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gl~~~~~~~~~~~~~~~~~~k~~~~~~~~ 445 (652)
T PLN02903 366 FAESSFKVFAGALESGGVVKAICVPDGKKISNNTALKKGDIYNEAIKSGAKGLAFLKVLDDGELEGIKALVESLSPEQAE 445 (652)
T ss_pred hcCCCchhhhhhhccCCeEEEEEeCCCCccchhhhcccHHHHHHHHHcCCCceEEEEEcCCCCccCccchhhcCCHHHHH
Confidence 0 0000 0 001110010 0011011111 00 0000 0
Q ss_pred --------cccccc--------------chh----h-hcccccccccCccEEEEeCCCc------------Ccccccccc
Q 012612 325 --------KWGCDL--------------QSE----H-ERYLTEEAFGGCPVIVSDYPKE------------IKAFYMRQN 365 (460)
Q Consensus 325 --------~~~~~l--------------~~~----~-e~~l~~~~~~~~p~~I~~fP~~------------~~pf~~~~~ 365 (460)
+.|+.+ ... . +.-|.++- ...++||+|||+. ++||+++..
T Consensus 446 ~l~~~~~~~~GD~~~~~a~~~~~~~~~lG~lR~~l~~~l~l~~~~-~~~flWV~dFPlFe~~ee~~~~~a~HHPFTap~~ 524 (652)
T PLN02903 446 QLLAACGAGPGDLILFAAGPTSSVNKTLDRLRQFIAKTLDLIDPS-RHSILWVTDFPMFEWNEDEQRLEALHHPFTAPNP 524 (652)
T ss_pred HHHHHhCCCCCcEEEEECCcchHHHHHHHHHHHHHHHHcCCCCCC-CceEEEEEeCCCCCccCCCCceEecCCCCCCCCC
Confidence 000000 000 0 00111111 1368999999983 789998754
Q ss_pred CC-----ccceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcc----cHHHHHHHHhcCCCCCcceeccHHHHH
Q 012612 366 DD-----GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWWYLDLRHYGSVPHAGFGLGFERLV 436 (460)
Q Consensus 366 ~~-----~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~----~~~~yl~~~~~G~pp~~G~giGidRL~ 436 (460)
.| .-.+..|||++||+ ||+|||+|+|+++.|++.++..|++++ .|+|||+|++||+|||||+|+|+|||+
T Consensus 525 ~d~~~l~~~~a~~YDLVlNG~-EiggGS~Rih~~~~q~~~f~~~g~~~e~~~~~F~~~l~a~~yG~PphgG~alGldRlv 603 (652)
T PLN02903 525 EDMGDLSSARALAYDMVYNGV-EIGGGSLRIYRRDVQQKVLEAIGLSPEEAESKFGYLLEALDMGAPPHGGIAYGLDRLV 603 (652)
T ss_pred cchhhhhhhhhhcceeEecce-eeccceEecCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCceeecHHHHH
Confidence 33 12467899999998 999999999999999999999999986 589999999999999999999999999
Q ss_pred HHHcCCCCccccccccCCCCC
Q 012612 437 QFATGVENIRDAIPFPRTPGS 457 (460)
Q Consensus 437 m~l~~~~~Irdv~~FPr~~~~ 457 (460)
|+|+|.+||||||+||++.+.
T Consensus 604 mll~~~~~IrdviaFPKt~~g 624 (652)
T PLN02903 604 MLLAGAKSIRDVIAFPKTTTA 624 (652)
T ss_pred HHHcCCCchHheEecCCCCCc
Confidence 999999999999999998764
|
|
| >KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-89 Score=661.66 Aligned_cols=425 Identities=26% Similarity=0.440 Sum_probs=373.3
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc---c---hhhHhccCCCCC
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---G---YDQVKSGLITTG 83 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~---~---~~~~~~~~l~~g 83 (460)
..+.++||... ..++.|.|+||||+.|..||++|+.||++.+ ++||++..+.. . .+.++. |+.|
T Consensus 69 ~~~~v~dl~~~------~~~~~V~vRgrVhtsr~~GK~~FlvLRq~~~--tVQ~~~~~~~~~~isk~Mvkf~~~--is~E 138 (533)
T KOG0556|consen 69 ELTDVSDLDES------NDGSEVLVRGRVHTSRLKGKLCFLVLRQQGS--TVQCLVAVNEDGTISKQMVKFAGS--ISKE 138 (533)
T ss_pred ceeehhhhhhh------cCCceEEEEEEEeeccccceEEEEEEeccCc--eEEEEEEcCCCchHHHHHHHHHhh--cCcc
Confidence 34567777654 6789999999999999999999999999875 59999976543 1 223455 9999
Q ss_pred cEEEEEeeEeecCC-----CCceEEEEEeEEEEEecCCCCCCCCcccc--------------------Chhhhhcccccc
Q 012612 84 ASIWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKRV--------------------SREFLRTKAHLR 138 (460)
Q Consensus 84 ~~V~V~G~v~~~~~-----~~~~~El~~~~i~ils~~~~~~p~~~~~~--------------------~~~~~r~~r~l~ 138 (460)
|+|.|.|+|++.+. .++.+||++.+|.++|.+++.+|+..++. ..++..+||.+|
T Consensus 139 SiV~v~g~v~k~~~~i~scT~qdvEi~v~~iyviS~a~~~LPl~veDasrse~~eE~a~~~~~~~~~Vn~dtRLdnRvlD 218 (533)
T KOG0556|consen 139 SIVDVRGVVVKVKEPIKSCTVQDVEIHVRKIYVISIALPNLPLQVEDASRSEPDEEKAAEPESTLARVNLDTRLDNRVLD 218 (533)
T ss_pred eEEEEEEEEecCCCcccccccceeEEEEEEEEEEecccccCCeeehhhcccccchhhhcCCccccceecccccccceeee
Confidence 99999999998653 35789999999999999999899864322 123344899999
Q ss_pred CCChhhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCC
Q 012612 139 PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALS 217 (460)
Q Consensus 139 ~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~ 217 (460)
+|+|..+++|++++.|..++|+||..+||+||+||.|.+.++||++.+|.| .||+.++||+|||||||| +++++|+
T Consensus 219 LRtptnqAiFriq~gvc~~FRe~L~~kgF~EIhTpKli~asSEGGanvF~v---~Yfk~~A~LAQSPQLyKQMaI~gdf~ 295 (533)
T KOG0556|consen 219 LRTPTNQAIFRIQAGVCFAFREYLRSKGFVEIHTPKLIGASSEGGANVFRV---SYFKQKAYLAQSPQLYKQMAICGDFE 295 (533)
T ss_pred cccccchheeehHHHHHHHHHHHHHhcCcceecccccccccCCCCceeEEE---EeccCcchhhcChHHHHHHHHhcchh
Confidence 999999999999999999999999999999999999999999999999999 899999999999999998 6788999
Q ss_pred ceEEEecccccCCCCCCCCCCccceeeeeecCC-CHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhh
Q 012612 218 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTV 296 (460)
Q Consensus 218 rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~-~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 296 (460)
|||+||||||+|+|+|.||++||+-||+||+|. .|+|+|+++.+++.++++.+.+++..+|+..+++++.+-.+ .
T Consensus 296 rVyeIGpVfRAEdSnthRhltEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~l~ery~~Eie~Vr~qyp~e~fk----f 371 (533)
T KOG0556|consen 296 RVYEIGPVFRAEDSNTHRHLTEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKGLRERYAKEIETVRKQYPFEPFK----F 371 (533)
T ss_pred heeeecceeeccccchhhhhHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc----c
Confidence 999999999999999999999999999999998 59999999999999999999999988887766655422111 1
Q ss_pred hcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccc----cccccCccEEEEeCCCcCccccccccCCc-cce
Q 012612 297 AERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLT----EEAFGGCPVIVSDYPKEIKAFYMRQNDDG-RTV 371 (460)
Q Consensus 297 ~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~----~~~~~~~p~~I~~fP~~~~pf~~~~~~~~-~~~ 371 (460)
+ .|-.+++|.|++++|++.|++.. ..+||+.+.|+.|. +++.. .+.++.+||..++|||.++++++ .++
T Consensus 372 ~-~~~lrl~~~e~v~mLreaGvE~g----~~dDlsTe~Ek~LG~lV~eky~t-dfyildkyP~avRPFYTmpd~~~p~yS 445 (533)
T KOG0556|consen 372 L-EPPLRLTFKEGVAMLREAGVEMG----DEDDLSTESEKKLGQLVREKYDT-DFYILDKYPLAVRPFYTMPDPENPRYS 445 (533)
T ss_pred C-CCceEeehHHHHHHHHHcCcccC----CccccCChhHHHHHHHHHHHhCC-cEEEEccCccccccccccCCCCCCCcc
Confidence 1 35578999999999999998643 34589999898874 45555 78889999999999998887765 589
Q ss_pred eeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccc
Q 012612 372 AAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPF 451 (460)
Q Consensus 372 ~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~F 451 (460)
++||++++| .||.+|.||+|+++.|.++++.+|+++..+..|+++++||+|||||+|||+||++|++||..|||...+|
T Consensus 446 nSyD~fmRG-eEIlSGAQRIhdpe~L~era~~hGid~~~i~~YidsFryG~PPHaGgGIGLERvvmlyl~L~nIR~~SlF 524 (533)
T KOG0556|consen 446 NSYDFFMRG-EEILSGAQRIHDPELLVERAKEHGIDPSKISTYIDSFRYGAPPHAGGGIGLERVVMLYLGLNNIRKTSLF 524 (533)
T ss_pred cchhheech-hhhhccccccCCHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCCCCCcccHHHHHHHHhcCCcchhhccC
Confidence 999999999 5999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCc
Q 012612 452 PRTPGSV 458 (460)
Q Consensus 452 Pr~~~~~ 458 (460)
||+|+|+
T Consensus 525 PRDPkRL 531 (533)
T KOG0556|consen 525 PRDPKRL 531 (533)
T ss_pred CCCcccc
Confidence 9999997
|
|
| >KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-90 Score=678.20 Aligned_cols=442 Identities=18% Similarity=0.262 Sum_probs=380.5
Q ss_pred CCCCccccceeeeccccCCccC---CCCCCCCEEEEEEEEeeeccCC-CeEEEEEEcCCCccceEEEEeCCc----cchh
Q 012612 2 GSKVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA----EGYD 73 (460)
Q Consensus 2 ~~~~~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~GwV~~~R~~g-~~~Fv~lrD~~~~~~iQvv~~~~~----~~~~ 73 (460)
-|+++||..++++.|+...|.+ ++...+..|+|+|||+++|.+| |++|++|++++ .+||||++.+. ..|.
T Consensus 74 ~Pyphkf~vs~si~~fieky~~l~~ge~~~n~~~svaGRI~s~R~sGsKL~Fydl~~~g--~klQvm~~~~~~~~~~~F~ 151 (560)
T KOG1885|consen 74 NPYPHKFHVSISIPDFIEKYLHLATGEHLDNEIVSVAGRIHSKRESGSKLVFYDLHGDG--VKLQVMANAKKITSEEDFE 151 (560)
T ss_pred CCCcchhhccccHHHHHHHhcCcccccccccceeeeeeeEeeeeccCCceEEEEEecCC--eEEEEEEehhhcCCHHHHH
Confidence 4899999999999999988753 5555667799999999999986 89999999885 46999999765 2466
Q ss_pred hHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccccChhh---hhccccccCC-ChhhhHHHH
Q 012612 74 QVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREF---LRTKAHLRPR-TNTFGAVAR 149 (460)
Q Consensus 74 ~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~~~~---~r~~r~l~~R-~~~~~~~~~ 149 (460)
+..+ .|+.||+|+|+|.+.+|+++ +++|.+.++.+||+|+ .|+|.+.+++.+ .-+.||+|+- ++..+..|+
T Consensus 152 ~~~~-~lkrGDiig~~G~pgrt~~g--ELSi~~~~~~lLspcL--h~lP~~~~gLkD~EtRyrqRylDlilN~~~r~~f~ 226 (560)
T KOG1885|consen 152 QLHK-FLKRGDIIGVSGYPGRTKSG--ELSIIPNEIILLSPCL--HMLPHEHFGLKDKETRYRKRYLDLILNPEVRDRFR 226 (560)
T ss_pred HHHh-hhhccCEEeeecCCCcCCCc--eEEEeecchheecchh--ccCChhhcCCCcHHHHHHHHHHHHHcCHHHHHHHH
Confidence 6432 39999999999999998877 8999999999999999 566655555433 2268999987 557899999
Q ss_pred HHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHH-HHHhcCCCceEEEeccccc
Q 012612 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNA-ETYATALSNVYTFGPTFRA 228 (460)
Q Consensus 150 ~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~~g~~rvfeI~~~FR~ 228 (460)
+|++|++.||.||+++||+||+||+|...++++.+.|| ||+++-++.++||+++||||+ +|+++|++||||||+.|||
T Consensus 227 ~RakII~~iRkfld~rgFlEVETPmmn~iaGGA~AkPF-IT~hndldm~LylRiAPEL~lK~LvVGGldrVYEIGr~FRN 305 (560)
T KOG1885|consen 227 IRAKIISYIRKFLDSRGFLEVETPMMNMIAGGATAKPF-ITHHNDLDMDLYLRIAPELYLKMLVVGGLDRVYEIGRQFRN 305 (560)
T ss_pred HHHHHHHHHHHHhhhcCceEecchhhccccCccccCce-eecccccCcceeeeechHHHHHHHHhccHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999 678899999999999999997 5999999999999999999
Q ss_pred CCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCc------------cccccccccccchhHhhhhhh
Q 012612 229 ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK------------EDMDFFNTWIEKGIIDRLSTV 296 (460)
Q Consensus 229 E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~------------~~i~~~~~~~~~~~~~~l~~~ 296 (460)
|++ +.+||||||.||+||||+||+|+|+++|+|+..++..+.+..+ .++++..+|.+.++++.|++.
T Consensus 306 EGI-DlTHNPEFTTcEfY~AYady~dlm~~TE~l~s~mv~~i~G~~~i~y~p~~~~~~~~eldf~~pfrri~mi~~L~k~ 384 (560)
T KOG1885|consen 306 EGI-DLTHNPEFTTCEFYMAYADYEDLMDMTEELLSGMVKNITGSYKITYHPNGPEEPELELDFTRPFRRIEMIEELEKE 384 (560)
T ss_pred cCc-ccccCCCcchHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCceeEeecCCCCCCCceeeeccCCeeeeeHHHHHHHH
Confidence 999 6899999999999999999999999999999999999976532 247788899999999999999
Q ss_pred hcCCCcc---cCHHHHHHHHHHH----ccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCcc
Q 012612 297 AERDFVQ---LSYTDAIELLIKA----KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGR 369 (460)
Q Consensus 297 ~~~~~~~---i~~~ea~~~l~~~----~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~ 369 (460)
++.+++. +.-.|+-++|... +++++.+..-+..|+.+.+.+|.+.+ . +|+||.|+|..|||+++.+.+..+
T Consensus 385 lgi~l~~~~~l~~~e~~~~L~~~~~~~~v~~p~p~t~arlLdKLvg~flE~~c-v-nPTFi~~hP~imSPLAK~hrs~~g 462 (560)
T KOG1885|consen 385 LGIKLPPGSTLHTEETRELLKSLCVDEAVECPPPRTTARLLDKLVGEFLEPTC-V-NPTFIIDHPQIMSPLAKYHRSKAG 462 (560)
T ss_pred hCCCCCCccccCchhhHHHHHHHHHhcccCCCCcccHHHHHHHHHhHhhcccc-C-CCeeEcCCchhcCccccccccccc
Confidence 9998874 5667777777654 34433333344567888887777755 3 799999999999999998888888
Q ss_pred ceeeeecccCCceeeecHHHhhhhHHHHHHHHHHc------CCCccc--HHHHHHHHhcCCCCCcceeccHHHHHHHHcC
Q 012612 370 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDS--YWWYLDLRHYGSVPHAGFGLGFERLVQFATG 441 (460)
Q Consensus 370 ~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~------~~~~~~--~~~yl~~~~~G~pp~~G~giGidRL~m~l~~ 441 (460)
.++||||+++|- ||||++.+.+|+-.|+++|+++ |-|+.. -+.|++|++||+||+||||+|||||+|+||+
T Consensus 463 lteRFElFi~~k-EicNAYtElNdP~~Qr~rFe~Q~~~k~~GDDEa~~~De~Fc~ALEYGlPPtgGwGmGIDRL~MllTd 541 (560)
T KOG1885|consen 463 LTERFELFIAGK-EICNAYTELNDPVDQRQRFEQQARDKDAGDDEAQMVDEDFCTALEYGLPPTGGWGMGIDRLVMLLTD 541 (560)
T ss_pred hhhHHHHhhhhH-HHhhhhhhhcCHHHHHHHHHHHHHHhhcCCcccccccHHHHHHHHcCCCCCCccccchhhhhhhhcC
Confidence 999999999996 9999999999999999998653 444222 2779999999999999999999999999999
Q ss_pred CCCccccccccCCC
Q 012612 442 VENIRDAIPFPRTP 455 (460)
Q Consensus 442 ~~~Irdv~~FPr~~ 455 (460)
..|||||++||-..
T Consensus 542 s~~I~EVL~Fp~mk 555 (560)
T KOG1885|consen 542 SNNIREVLLFPAMK 555 (560)
T ss_pred CcchhheeeccccC
Confidence 99999999999753
|
|
| >PRK00476 aspS aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-87 Score=710.04 Aligned_cols=434 Identities=25% Similarity=0.362 Sum_probs=332.8
Q ss_pred cceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEE
Q 012612 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88 (460)
Q Consensus 9 ~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V 88 (460)
.+++++.++... +.|++|+|+|||+++|.+|+++|++|||++|. +|||++.....|+.+++ |+.||+|.|
T Consensus 3 ~r~~~~~~l~~~------~~g~~V~l~GwV~~~R~~g~l~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~--l~~es~V~V 72 (588)
T PRK00476 3 MRTHYCGELRES------HVGQTVTLCGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPDAEAFEVAES--LRSEYVIQV 72 (588)
T ss_pred ccceeHHHhhHH------hCCCEEEEEEEEEEEEeCCCeEEEEEEeCCce--EEEEEeCCHHHHHHHhC--CCCCCEEEE
Confidence 367899999764 78999999999999999999999999999975 99999863334666778 999999999
Q ss_pred EeeEeecCCC-------CceEEEEEeEEEEEecCCCCCCCCcc--ccChhhhh-ccccccCCChhhhHHHHHHHHHHHHH
Q 012612 89 QGNVVPSQGS-------KQKVELKVNKIVLVGKSDPSYPIQKK--RVSREFLR-TKAHLRPRTNTFGAVARVRNALAYAT 158 (460)
Q Consensus 89 ~G~v~~~~~~-------~~~~El~~~~i~ils~~~~~~p~~~~--~~~~~~~r-~~r~l~~R~~~~~~~~~~Rs~i~~~i 158 (460)
+|+|.+++.+ ++++||.+++++|||+|. ++|++.. ....+.+| +|||||+|++.+++++++||++++++
T Consensus 73 ~G~v~~~~~~~~n~~~~~g~~El~~~~i~il~~a~-~lP~~~~~~~~~~~~~Rl~~R~LdlR~~~~~~~l~~Rs~i~~~i 151 (588)
T PRK00476 73 TGTVRARPEGTVNPNLPTGEIEVLASELEVLNKSK-TLPFPIDDEEDVSEELRLKYRYLDLRRPEMQKNLKLRSKVTSAI 151 (588)
T ss_pred EEEEEecCCcccCccCCCCcEEEEEeEEEEEecCC-CCCCcccccccCChhhhhhcceEeecCHHHHHHHHHHHHHHHHH
Confidence 9999987632 568999999999999998 5676542 22344555 99999999999999999999999999
Q ss_pred HHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCCCCCCCCC
Q 012612 159 HKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHL 237 (460)
Q Consensus 159 R~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~~~~~rHl 237 (460)
|+||.++||+||+||+|+++++||+++ |.|++..+.+..+||+||||+||| ||++|++||||||||||||+++++||+
T Consensus 152 R~ff~~~gFiEV~TP~L~~s~~ega~~-f~v~~~~~~~~~~~L~qSpql~kq~l~~~g~~rvfqi~~~FR~E~~~~~r~~ 230 (588)
T PRK00476 152 RNFLDDNGFLEIETPILTKSTPEGARD-YLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQP 230 (588)
T ss_pred HHHHHHCCCEEEECCeeecCCCCCCcc-ceecccccCCceeecCCCHHHHHHHHHhcccCceEEEeceeecCCCCCCcCc
Confidence 999999999999999999999999877 888654467788899999999998 788999999999999999999999986
Q ss_pred CccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCc----cccccccccc-----cc---------hhHhhhh-----
Q 012612 238 AEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK----EDMDFFNTWI-----EK---------GIIDRLS----- 294 (460)
Q Consensus 238 ~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~----~~i~~~~~~~-----~~---------~~~~~l~----- 294 (460)
|||||||||+|.+++|+|+++|+||+++++.+.+... ..+.|...+. .+ ++.+.+.
T Consensus 231 -EFt~le~e~af~~~~dvm~~~E~li~~i~~~~~~~~~~~pf~r~ty~ea~~~yg~dkPDlR~~~eI~DVT~if~~s~f~ 309 (588)
T PRK00476 231 -EFTQIDIEMSFVTQEDVMALMEGLIRHVFKEVLGVDLPTPFPRMTYAEAMRRYGSDKPDLRFGLELVDVTDLFKDSGFK 309 (588)
T ss_pred -ccccceeeecCCCHHHHHHHHHHHHHHHHHHHhCccCCCCceEEEHHHHHHHHCCCCCcccCCceehhHHHHhccCCch
Confidence 9999999999999999999999999999998765210 0111110000 00 0000000
Q ss_pred ---hhh-------cCCCc-------ccCHHHHHHHHHHHcc------cccc-c----------------------ccccc
Q 012612 295 ---TVA-------ERDFV-------QLSYTDAIELLIKAKK------KFEF-L----------------------VKWGC 328 (460)
Q Consensus 295 ---~~~-------~~~~~-------~i~~~ea~~~l~~~~~------~~~~-~----------------------~~~~~ 328 (460)
+.+ ...++ +-..++..++.+..|. .... . .+-|+
T Consensus 310 vf~~~l~~gg~VkaI~vp~~~~~~~rk~id~L~e~AK~~gakGL~~i~~~~~~l~~~~akflsee~~~~L~e~l~~k~GD 389 (588)
T PRK00476 310 VFAGAANDGGRVKAIRVPGGAAQLSRKQIDELTEFAKIYGAKGLAYIKVNEDGLKGPIAKFLSEEELAALLERTGAKDGD 389 (588)
T ss_pred hhhhhhccCCeEEEEEecCCCCccchhHHHHHHHHHHHcCCCceEEEEEcCCCCcCchhhcCCHHHHHHHHHHhCCCCCC
Confidence 000 00001 1112222233332210 0000 0 00011
Q ss_pred cc--------------chh----hh-cccccccccCccEEEEeCCCc------------CccccccccCC--------c-
Q 012612 329 DL--------------QSE----HE-RYLTEEAFGGCPVIVSDYPKE------------IKAFYMRQNDD--------G- 368 (460)
Q Consensus 329 ~l--------------~~~----~e-~~l~~~~~~~~p~~I~~fP~~------------~~pf~~~~~~~--------~- 368 (460)
.+ ... .+ .-+.+.. ..+++||+|||.. ++||+++...| +
T Consensus 390 ll~~~A~~~~~v~~aLG~LR~~L~~~~~~~~~~-~~~f~Wv~dfPlf~~~~~~~~~~~~HhpFT~p~~~d~~~l~~~~p~ 468 (588)
T PRK00476 390 LIFFGADKAKVVNDALGALRLKLGKELGLIDED-KFAFLWVVDFPMFEYDEEEGRWVAAHHPFTMPKDEDLDELETTDPG 468 (588)
T ss_pred EEEEECCchHHHHHHHHHHHHHHHHHcCCCCCC-CceEEEEEeCCCCCccCCCCeeeeecCCCCCcCccChhHhhcCCHH
Confidence 00 000 00 0011111 1379999999983 78999875432 1
Q ss_pred -cceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcc----cHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCC
Q 012612 369 -RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVE 443 (460)
Q Consensus 369 -~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~----~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~ 443 (460)
-.+++|||++||+ ||+|||+|+|+++.|++.|+.+|++++ .++|||+|++||+|||||+|+|+|||+|+|+|.+
T Consensus 469 ~~~a~~~dlv~ng~-E~~~gs~ri~~~~~q~~~~~~~~~~~~~~~~~~~~~~~a~~~g~pph~g~~~G~dr~~~~~~~~~ 547 (588)
T PRK00476 469 KARAYAYDLVLNGY-ELGGGSIRIHRPEIQEKVFEILGISEEEAEEKFGFLLDALKYGAPPHGGIAFGLDRLVMLLAGAD 547 (588)
T ss_pred HhhhheeeeEEeee-eeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCc
Confidence 2568999999998 999999999999999999999999887 5899999999999999999999999999999999
Q ss_pred CccccccccCCCCC
Q 012612 444 NIRDAIPFPRTPGS 457 (460)
Q Consensus 444 ~Irdv~~FPr~~~~ 457 (460)
||||||+||++...
T Consensus 548 ~irdvi~fp~~~~g 561 (588)
T PRK00476 548 SIRDVIAFPKTQSA 561 (588)
T ss_pred cHHheeeccCCCCc
Confidence 99999999998764
|
|
| >PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-85 Score=701.36 Aligned_cols=434 Identities=22% Similarity=0.306 Sum_probs=320.4
Q ss_pred cceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc---cchhhHhccCCCCCcE
Q 012612 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGAS 85 (460)
Q Consensus 9 ~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~---~~~~~~~~~~l~~g~~ 85 (460)
.|+|+|.+|... +.|+.|+|+|||+++|++|+++|++|||++|. +|||++.+. ..|+.++. |+.||+
T Consensus 4 ~r~~~cg~l~~~------~~g~~V~l~GWV~~~R~~G~l~FidLRD~~G~--iQvV~~~~~~~~~~~~~~~~--L~~Esv 73 (706)
T PRK12820 4 NDRSFCGHLSLD------DTGREVCLAGWVDAFRDHGELLFIHLRDRNGF--IQAVFSPEAAPADVYELAAS--LRAEFC 73 (706)
T ss_pred ccccccccCChh------hCCCEEEEEEEEEEEEcCCCcEEEEEEeCCcc--EEEEEeCCcCCHHHHHHHhc--CCCCCE
Confidence 478999999875 78999999999999999999999999999975 999998653 23566777 999999
Q ss_pred EEEEeeEeecCC-------CCceEEEEEeEEEEEecCCCCCCCC--ccc-----------cChhhhh-ccccccCCChhh
Q 012612 86 IWIQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQ--KKR-----------VSREFLR-TKAHLRPRTNTF 144 (460)
Q Consensus 86 V~V~G~v~~~~~-------~~~~~El~~~~i~ils~~~~~~p~~--~~~-----------~~~~~~r-~~r~l~~R~~~~ 144 (460)
|.|+|+|.+++. .++++||.+++++||++|. .+|++ .+. ...+.+| +|||||+|++.+
T Consensus 74 V~V~G~v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~-~lP~~i~~~~~~~~~~~~~~~~~~e~~Rl~~RyLDLR~~~~ 152 (706)
T PRK12820 74 VALQGEVQKRLEETENPHIETGDIEVFVRELSILAASE-ALPFAISDKAMTAGAGSAGADAVNEDLRLQYRYLDIRRPAM 152 (706)
T ss_pred EEEEeEEeccCccccCCCCCCCcEEEEeeEEEEEecCC-CCCCCCcccccccccccccccccCHhhhhhCceeecCCHHH
Confidence 999999998532 2368999999999999996 35554 332 1234555 899999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEe
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFG 223 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~ 223 (460)
+++|++||++++++|+||.++||+||+||+|++++++|+++ |.+++..+.+..++|+||||+||| ||++|++||||||
T Consensus 153 ~~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~eGAr~-~~~p~~~~~~~~y~L~qSPQlykq~lm~~G~~rvfqI~ 231 (706)
T PRK12820 153 QDHLAKRHRIIKCARDFLDSRGFLEIETPILTKSTPEGARD-YLVPSRIHPKEFYALPQSPQLFKQLLMIAGFERYFQLA 231 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCCCCCcc-eEEeeecCCCcceecCCCHHHHHHHHHhccCCcEEEEe
Confidence 99999999999999999999999999999999999999887 444432223344559999999998 6889999999999
Q ss_pred cccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhc---cC----------------cccccccccc
Q 012612 224 PTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILD---NC----------------KEDMDFFNTW 284 (460)
Q Consensus 224 ~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~---~~----------------~~~i~~~~~~ 284 (460)
||||||+++++|| ||||||||||+|.|++|+|+++|+||+++++.... .+ ++++.+.-.+
T Consensus 232 ~~FR~E~~~t~r~-pEFT~LE~E~af~d~~dvm~l~E~li~~v~~~~~~~~~~pf~r~ty~eA~~~yG~DKPDlR~~~~l 310 (706)
T PRK12820 232 RCFRDEDLRPNRQ-PEFTQLDIEASFIDEEFIFELIEELTARMFAIGGIALPRPFPRMPYAEAMDTTGSDRPDLRFDLKF 310 (706)
T ss_pred chhcCCCCCCCcC-ccccccceeeccCCHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEHHHHHHHhCCCCCccccCcEE
Confidence 9999999988877 99999999999999999999999999999862110 00 1111110000
Q ss_pred ccc---------hhHh-hhhh---hhcCCCc----ccCH---HHHH--HHHHHHcc------cccc-c------------
Q 012612 285 IEK---------GIID-RLST---VAERDFV----QLSY---TDAI--ELLIKAKK------KFEF-L------------ 323 (460)
Q Consensus 285 ~~~---------~~~~-~l~~---~~~~~~~----~i~~---~ea~--~~l~~~~~------~~~~-~------------ 323 (460)
.+. .... .++. +....++ .++- ++++ ++.+..|. .... .
T Consensus 311 ~d~~~~~~~~~f~~f~~~~~~~g~v~~i~~~~~~~~~s~~~~~~~~~~~~~~~~g~~gl~~~~~~~~~~~~~~~~~~~~~ 390 (706)
T PRK12820 311 ADATDIFENTRYGIFKQILQRGGRIKGINIKGQSEKLSKNVLQNEYAKEIAPSFGAKGMTWMRAEAGGLDSNIVQFFSAD 390 (706)
T ss_pred EEHHHHhccCCchhhhhhhccCCeEEEEEeCCCccccCHHHHHHHHHHHHHHHcCCCceEEEEECCCCcCCchhccCCHH
Confidence 000 0000 0000 0000000 0111 1101 11222110 0000 0
Q ss_pred ----------ccccccc---------------chh-----hhcccccccccCccEEEEeCCC-----------cCccccc
Q 012612 324 ----------VKWGCDL---------------QSE-----HERYLTEEAFGGCPVIVSDYPK-----------EIKAFYM 362 (460)
Q Consensus 324 ----------~~~~~~l---------------~~~-----~e~~l~~~~~~~~p~~I~~fP~-----------~~~pf~~ 362 (460)
.+.|+.+ ... ...-|.++- ...++||+|||+ .++||++
T Consensus 391 ~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~~LG~lR~~l~~~~~l~~~~-~~~flWV~dFPlfe~~~e~~~~a~HHPFT~ 469 (706)
T PRK12820 391 EKEALKRRFHAEDGDVIIMIADASCAIVLSALGQLRLHLADRLGLIPEG-VFHPLWITDFPLFEATDDGGVTSSHHPFTA 469 (706)
T ss_pred HHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHHHHHcCCCCCC-CceEEEEEeCCcccCCCCCCeeeeeCCCCC
Confidence 0001100 000 000111111 136899999998 3699998
Q ss_pred cccCC--------c--cceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcc----cHHHHHHHHhcCCCCCcce
Q 012612 363 RQNDD--------G--RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWWYLDLRHYGSVPHAGF 428 (460)
Q Consensus 363 ~~~~~--------~--~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~----~~~~yl~~~~~G~pp~~G~ 428 (460)
+...| + -.+..|||++||+ ||+|||+|+|+++.|++.|+..|++++ .|++||+|++||+|||||+
T Consensus 470 p~~~d~~~l~~~~p~~~~~~~YDLV~nG~-E~ggGs~Rih~~~~q~~~f~~lg~~~~~~~~~Fgf~l~a~~~G~pphgG~ 548 (706)
T PRK12820 470 PDREDFDPGDIEELLDLRSRAYDLVVNGE-ELGGGSIRINDKDIQLRIFAALGLSEEDIEDKFGFFLRAFDFAAPPHGGI 548 (706)
T ss_pred cCccChhhhccCChHHhhhheeeEEecce-eeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCce
Confidence 74432 1 1467899999997 999999999999999999999999876 4789999999999999999
Q ss_pred eccHHHHHHHHcCCCCccccccccCCCCC
Q 012612 429 GLGFERLVQFATGVENIRDAIPFPRTPGS 457 (460)
Q Consensus 429 giGidRL~m~l~~~~~Irdv~~FPr~~~~ 457 (460)
|+|+|||+|+|+|.+||||||+||++...
T Consensus 549 a~G~dRlvm~l~~~~sirdviaFPK~~~g 577 (706)
T PRK12820 549 ALGLDRVVSMILQTPSIREVIAFPKNRSA 577 (706)
T ss_pred eccHHHHHHHHcCCccHHHhcccCCCCCC
Confidence 99999999999999999999999998764
|
|
| >KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-83 Score=621.32 Aligned_cols=415 Identities=31% Similarity=0.551 Sum_probs=375.4
Q ss_pred CCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc-cchhhHhccCCCCCcEEEEEeeEeecCCC---Cc
Q 012612 25 LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWIQGNVVPSQGS---KQ 100 (460)
Q Consensus 25 ~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~-~~~~~~~~~~l~~g~~V~V~G~v~~~~~~---~~ 100 (460)
.+..|+.|+|.||||+.|.+++++|++||||+|+ ||||++.+. ..|+.+ . |.+++.|.|.|++++.|.| .+
T Consensus 119 ~~~r~qrVkv~gWVhrlR~qk~l~FivLrdg~gf--lqCVl~~kl~~~yd~~-~--Ls~essv~vYG~i~~~p~GK~apg 193 (545)
T KOG0555|consen 119 TENRGQRVKVFGWVHRLRRQKSLIFIVLRDGTGF--LQCVLSDKLCQSYDAL-T--LSTESSVTVYGTIKKLPEGKSAPG 193 (545)
T ss_pred ccccCceEEeehhhHhhhhcCceEEEEEecCCce--EEEEEcchhhhhhccc-c--ccccceEEEEEEEecCcCCCCCCC
Confidence 3578999999999999999999999999999987 999999875 335444 3 9999999999999998654 47
Q ss_pred eEEEEEeEEEEEecCCCC---CCCCccccChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhCCceeecCceeec
Q 012612 101 KVELKVNKIVLVGKSDPS---YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITA 177 (460)
Q Consensus 101 ~~El~~~~i~ils~~~~~---~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~ 177 (460)
+.||.|+.++|++.|... .|+ +..++++.+.++|||-+|....+.+++.|+.+++++|++|.+.||.||..|.|+.
T Consensus 194 ghEl~vdy~Eiig~Apag~~~n~l-ne~s~~~~~LdnrHl~iRge~~s~vLK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQ 272 (545)
T KOG0555|consen 194 GHELNVDYWEIIGLAPAGGFDNPL-NEESDVDVLLDNRHLVIRGENASKVLKARAALLRAMRDHYFERGYTEVTPPTMVQ 272 (545)
T ss_pred CceEEeeeeeeecccCCCcccccc-cccCCcceEeccceeEEechhHHHHHHHHHHHHHHHHHHHHhcCceecCCCceEE
Confidence 899999999999998764 333 3456778888999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeeeccccCCccccccccHHHHHHHHhcCCCceEEEecccccCCCCCCCCCCccceeeeeecCCCHHHHHH
Q 012612 178 SDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMA 257 (460)
Q Consensus 178 ~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~ 257 (460)
..-||++..|.. +|||+++||+||+|||++....++++||+|+++||+|.|+|+|||+|||++|+|++|.+++++|+
T Consensus 273 TQVEGGsTLFkl---dYyGEeAyLTQSSQLYLEtclpAlgdvy~I~~SyRAEkSrTRRHLsEytHVEaE~afltfd~ll~ 349 (545)
T KOG0555|consen 273 TQVEGGSTLFKL---DYYGEEAYLTQSSQLYLETCLPALGDVYCIQQSYRAEKSRTRRHLSEYTHVEAECAFLTFDDLLD 349 (545)
T ss_pred EEecCcceEEee---cccCchhhccchhHHHHHHhhhhcCceeEecHhhhhhhhhhhhhhhhheeeeeecccccHHHHHH
Confidence 999999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCcc-ccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHcccccc--ccccccccchhh
Q 012612 258 CATAYLQYVVRYILDNCKE-DMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF--LVKWGCDLQSEH 334 (460)
Q Consensus 258 ~~e~li~~l~~~~~~~~~~-~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~--~~~~~~~l~~~~ 334 (460)
.+|.||...+..+++.+.. .+...++- + +....||.|++|.|||+.|++++++-++ ..++|+|+....
T Consensus 350 ~iE~lvc~~vdr~l~dp~~~li~~lnP~--------f-~~P~~PFkRm~Y~dAI~wLke~~vk~edg~~fefGdDI~eAa 420 (545)
T KOG0555|consen 350 RIEALVCDSVDRLLEDPIAPLIKQLNPD--------F-KAPKRPFKRMNYSDAIEWLKEHDVKKEDGTDFEFGDDIPEAA 420 (545)
T ss_pred HHHHHHHHHHHHHHhChhhhhHHHhCCC--------C-CCCCCchhcCCHHHHHHHHHhcCCcCccCcccccccchhhHH
Confidence 9999999999999877543 22222221 1 2356799999999999999999875433 357899999999
Q ss_pred hcccccccccCccEEEEeCCCcCccccccccCCc-cceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcccHHH
Q 012612 335 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG-RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWW 413 (460)
Q Consensus 335 e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~-~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~ 413 (460)
|+.+.+..+ .|+|++.||.++++|||+++.++ +.+++.|+++||+|||+|||+|+.+.+++.+.++..|+|+++|.|
T Consensus 421 ER~mtdtIg--~PIfLtrFpveiKsFYM~rc~dd~~lTESvD~LmPnVGEIvGGSMRi~d~eeLlagfkRegId~~pYYW 498 (545)
T KOG0555|consen 421 ERKMTDTIG--VPIFLTRFPVEIKSFYMKRCEDDPRLTESVDVLMPNVGEIVGGSMRIDDSEELLAGFKREGIDPDPYYW 498 (545)
T ss_pred HHhhhhhcC--CceEEeeccccccceeeecccCccccceeeeeecCCccccccceeeeccHHHHHHHHhhcCCCCCCceE
Confidence 999999764 79999999999999999988655 689999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCcc
Q 012612 414 YLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459 (460)
Q Consensus 414 yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~ 459 (460)
|++.++||..||||+|||+||++|||++..+||||++|||..+||.
T Consensus 499 y~DqrkyGt~pHGGyGLGlERfL~wL~~r~~vre~cLyPRfv~RC~ 544 (545)
T KOG0555|consen 499 YTDQRKYGTCPHGGYGLGLERFLAWLCDRYHVREVCLYPRFVGRCT 544 (545)
T ss_pred EeeccccccCCCCcccccHHHHHHHHhcccchhheeecchhhccCC
Confidence 9999999999999999999999999999999999999999999984
|
|
| >cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-81 Score=623.30 Aligned_cols=319 Identities=46% Similarity=0.800 Sum_probs=286.5
Q ss_pred cChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccH
Q 012612 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSG 205 (460)
Q Consensus 126 ~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Sp 205 (460)
++.++++++||||+|++.+++++++||.|++++|+||.++||+||+||+|+.+++|+++++|.+ +||++++||++||
T Consensus 2 ~~~~~~~~~r~l~lr~~~~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~e~~~~~f~~---~~~~~~~yL~~Sp 78 (322)
T cd00776 2 ANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFKV---SYFGKPAYLAQSP 78 (322)
T ss_pred CChHhhhhCceeeeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCCCccCCcccc---ccCCCcceecCCH
Confidence 4667888999999999999999999999999999999999999999999999999999999988 8999999999999
Q ss_pred HHHHHHHhcCCCceEEEecccccCCCCCCCCCCccceeeeeecCC-CHHHHHHHHHHHHHHHHHHHhccCcccccccccc
Q 012612 206 QLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTW 284 (460)
Q Consensus 206 ql~l~l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~-~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~ 284 (460)
|+|||+++.|++|||+||||||||++++.||||||||||||++|+ |++|+|+++|++|+++++.+.+.+..++.+...
T Consensus 79 ql~lk~l~~~~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~~~~l~~~~~~~~~~~~~- 157 (322)
T cd00776 79 QLYKEMLIAALERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVNQ- 157 (322)
T ss_pred HHHHHHHHHhhhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhc-
Confidence 999986555599999999999999998899999999999999999 999999999999999999999887766544210
Q ss_pred ccchhHhhhhhhhcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccc
Q 012612 285 IEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQ 364 (460)
Q Consensus 285 ~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~ 364 (460)
.......+..||+++||.||++++++.+.. ....||.+++..+|++|.+.+.. +|+||+|||.+++|||++.
T Consensus 158 -----~~~~~~~~~~~~~rit~~eA~~~l~~~~~~--~~~~~~~~l~~~~e~~l~~~~~~-~p~fi~~~P~~~~pfy~~~ 229 (322)
T cd00776 158 -----LNRELLKPLEPFPRITYDEAIELLREKGVE--EEVKWGEDLSTEHERLLGEIVKG-DPVFVTDYPKEIKPFYMKP 229 (322)
T ss_pred -----cCcccccCCCCceEEEHHHHHHHHHHcCCC--CCCCccchhcHHHHHHHHHHhCC-CcEEEECCccccCCceeee
Confidence 001111234689999999999999987653 12468999999999999876533 8999999999999999877
Q ss_pred cCCc-cceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCC
Q 012612 365 NDDG-RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVE 443 (460)
Q Consensus 365 ~~~~-~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~ 443 (460)
++++ ++++||||+++|++||+||++|+||+++|++++++.|+++++++|||+|+++|+|||||||||||||+|+++|.+
T Consensus 230 ~~~~~~~~~~fdl~~~G~~El~~g~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pp~~G~giGidRL~m~~~g~~ 309 (322)
T cd00776 230 DDDNPETVESFDLLMPGVGEIVGGSQRIHDYDELEERIKEHGLDPESFEWYLDLRKYGMPPHGGFGLGLERLVMWLLGLD 309 (322)
T ss_pred cCCCCCeeEEEEEEcCCCeEEeeceeecCCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCCceeeEhHHHHHHHHcCCC
Confidence 6544 799999999999669999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCCC
Q 012612 444 NIRDAIPFPRTPG 456 (460)
Q Consensus 444 ~Irdv~~FPr~~~ 456 (460)
|||||++|||+++
T Consensus 310 ~Irdv~~FPr~~~ 322 (322)
T cd00776 310 NIREAILFPRDPK 322 (322)
T ss_pred chheEeecCCCCC
Confidence 9999999999985
|
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >PRK06462 asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-79 Score=611.12 Aligned_cols=317 Identities=29% Similarity=0.504 Sum_probs=280.7
Q ss_pred ChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCCCCC----CceeeeccccCCcccccc
Q 012612 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAG----EQFCVTTLDFFEKPAFLT 202 (460)
Q Consensus 127 ~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~----~~F~v~~~~~~~~~~~L~ 202 (460)
+.+...++|++++|++.++++|++||+|++++|+||.++||+||+||+|+++++++.. .+|.+.+.+||++++||+
T Consensus 9 ~~~~~~~~r~~~lr~~~~~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~yL~ 88 (335)
T PRK06462 9 EYEEFLRMSWKHISSEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDFYGVEYYLA 88 (335)
T ss_pred chhhhhhhHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccccCCccccccccCCCceeec
Confidence 5566668999999999999999999999999999999999999999999998765332 345444448999999999
Q ss_pred ccHHHHHHHHhcCCCceEEEecccccCCCCC--CCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCcccccc
Q 012612 203 VSGQLNAETYATALSNVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDF 280 (460)
Q Consensus 203 ~Spql~l~l~~~g~~rvfeI~~~FR~E~~~~--~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~ 280 (460)
+|||+|||++++|++||||||||||||++++ .||||||||||||++|.|++|+|+++|+||+++++.+.++++.++.+
T Consensus 89 ~Spql~k~ll~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv~~i~~~~~~~~~~~i~~ 168 (335)
T PRK06462 89 DSMILHKQLALRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIEDLIKYLVKELLEEHEDELEF 168 (335)
T ss_pred cCHHHHHHHHHhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Confidence 9999999999999999999999999999976 69999999999999999999999999999999999999887766655
Q ss_pred ccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCccc
Q 012612 281 FNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAF 360 (460)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf 360 (460)
.+.. +. .+..||+++||.||++++++.+.. ..++.+++...|++|.+.+ . .|+||+|||..++||
T Consensus 169 ~~~~--------~~-~~~~p~~rit~~eA~~~l~~~~~~----~~~~~~l~~~~E~~l~~~~-~-~p~fi~~yP~~~~pf 233 (335)
T PRK06462 169 FGRD--------LP-HLKRPFKRITHKEAVEILNEEGCR----GIDLEELGSEGEKSLSEHF-E-EPFWIIDIPKGSREF 233 (335)
T ss_pred cCCc--------cc-cCCCCCeEEEHHHHHHHHHhcCCC----cchHHHHhHHHHHHHHHHh-C-CCEEEECCChhhCCc
Confidence 4321 00 124689999999999999887654 2346688889999988754 4 799999999999999
Q ss_pred cccccC-CccceeeeecccC-CceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHH
Q 012612 361 YMRQND-DGRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQF 438 (460)
Q Consensus 361 ~~~~~~-~~~~~~~fDl~~~-G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~ 438 (460)
|++.++ ++.+++||||+++ |+|||++|++|+|+++++.++++..|++++.++|||+|++||+|||||||||+|||+|+
T Consensus 234 y~~~~~~~~~~~~rFdL~~~~g~gEl~~g~er~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~glGidRLvm~ 313 (335)
T PRK06462 234 YDREDPERPGVLRNYDLLLPEGYGEAVSGGEREYEYEEIVERIREHGVDPEKYKWYLEMAKEGPLPSAGFGIGVERLTRY 313 (335)
T ss_pred ccccCCCCCCEEEEEEEEeeCCCcEEeeeEEEecCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCCCeEEEcHHHHHHH
Confidence 987654 4468899999997 77999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCccccccccCCCCCc
Q 012612 439 ATGVENIRDAIPFPRTPGSV 458 (460)
Q Consensus 439 l~~~~~Irdv~~FPr~~~~~ 458 (460)
+||.+|||||++|||++++.
T Consensus 314 ~~g~~~Irdv~~FPr~~g~~ 333 (335)
T PRK06462 314 ICGLRHIREVQPFPRVPGIV 333 (335)
T ss_pred HcCCCchheeeeccCCCCCC
Confidence 99999999999999999975
|
|
| >KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-77 Score=590.29 Aligned_cols=435 Identities=23% Similarity=0.310 Sum_probs=324.1
Q ss_pred cceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhh--HhccCCCCCcEE
Q 012612 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ--VKSGLITTGASI 86 (460)
Q Consensus 9 ~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~--~~~~~l~~g~~V 86 (460)
++++.+.++... .+|+.|.++||+...|.+|.+.|..|||.+|. +|+.++.+.-...+ ... ++.||+|
T Consensus 33 ~~t~~~~el~~~------~vg~kv~l~GWl~~~~~~k~~~F~~LRD~~G~--vq~lls~~s~~l~~~~~~~--v~~e~vv 102 (628)
T KOG2411|consen 33 SRTSLCGELSVN------DVGKKVVLCGWLELHRVHKMLTFFNLRDAYGI--VQQLLSPDSFPLAQKLEND--VPLEDVV 102 (628)
T ss_pred hhhccchhhccC------ccCCEEEEeeeeeeeeccccceEEEeeccCcc--eEEEecchhhhHHhcccCC--CChhheE
Confidence 456788888765 79999999999999999999999999999975 88888776422222 344 8999999
Q ss_pred EEEeeEeecCC-------CCceEEEEEeEEEEEecCCCCCCCCccc-------cChhhhhccccccCCChhhhHHHHHHH
Q 012612 87 WIQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR-------VSREFLRTKAHLRPRTNTFGAVARVRN 152 (460)
Q Consensus 87 ~V~G~v~~~~~-------~~~~~El~~~~i~ils~~~~~~p~~~~~-------~~~~~~r~~r~l~~R~~~~~~~~~~Rs 152 (460)
.|.|+|..++. .+|.+|+.++++.+++++...+|+.-.+ .+..+..++||||||++.++..+++||
T Consensus 103 ~v~gtvv~Rp~~sin~km~tg~vev~~e~~~vln~~~~~~p~~v~df~~ld~~~~er~rl~~RyldLR~~kmq~nLrlRS 182 (628)
T KOG2411|consen 103 QVEGTVVSRPNESINSKMKTGFVEVVAEKVEVLNPVNKKLPFEVTDFKELDDLAGERIRLRFRYLDLRRPKMQNNLRLRS 182 (628)
T ss_pred eeeeeEecccccccCccccccceEEEeeeeEEecCccCCCccchhhhhhhhccccccccchhhhhhhccHHHHHHHHHHH
Confidence 99999987642 3578999999999999998878865321 233334489999999999999999999
Q ss_pred HHHHHHHHhhhh-CCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCC
Q 012612 153 ALAYATHKFFQE-NGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAEN 230 (460)
Q Consensus 153 ~i~~~iR~ff~~-~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~ 230 (460)
.+...+|+||.+ .||+||+||+|...++||+++ |.|+++.--|+-+.|.||||+||| ||++|++||||||+|||+|+
T Consensus 183 ~~v~~iR~yl~n~~GFvevETPtLFkrTPgGA~E-FvVPtr~~~g~FYaLpQSPQQfKQlLMvsGidrYyQiARCfRDEd 261 (628)
T KOG2411|consen 183 NVVKKIRRYLNNRHGFVEVETPTLFKRTPGGARE-FVVPTRTPRGKFYALPQSPQQFKQLLMVSGIDRYYQIARCFRDED 261 (628)
T ss_pred HHHHHHHHHHhhhcCeeeccCcchhccCCCccce-eecccCCCCCceeecCCCHHHHHHHHHHhchhhHHhHHhhhcccc
Confidence 999999999966 579999999999999999999 889887655778899999999999 79999999999999999999
Q ss_pred CCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCc----ccccc------cccccc--------chhHhh
Q 012612 231 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK----EDMDF------FNTWIE--------KGIIDR 292 (460)
Q Consensus 231 ~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~----~~i~~------~~~~~~--------~~~~~~ 292 (460)
++.+|+ |||||+|+||+|.+.+++|+++|++++++|....+... ..|.| ++.-.+ .++.+.
T Consensus 262 lR~DRQ-PEFTQvD~EMsF~~~~dim~liEdll~~~ws~~k~~~l~~PF~riTY~~Am~~YG~DKPD~Rf~l~l~dv~~~ 340 (628)
T KOG2411|consen 262 LRADRQ-PEFTQVDMEMSFTDQEDIMKLIEDLLRYVWSEDKGIQLPVPFPRITYADAMDKYGSDKPDTRFPLKLKDVSES 340 (628)
T ss_pred cCcccC-CcceeeeeEEeccCHHHHHHHHHHHHHHhchhhcCCCCCCCcccccHHHHHHHhCCCCCcccCCcEecchHHh
Confidence 999999 99999999999999999999999999999988765311 00111 000000 000000
Q ss_pred hhh-----hhc-------------------------------------CCC--------------cccCHH-HHHHHHHH
Q 012612 293 LST-----VAE-------------------------------------RDF--------------VQLSYT-DAIELLIK 315 (460)
Q Consensus 293 l~~-----~~~-------------------------------------~~~--------------~~i~~~-ea~~~l~~ 315 (460)
+.+ ... .+| ..++.+ .|.++.+.
T Consensus 341 ~~~~~~~~~~~d~l~~~~~vv~~~~~~~~s~~~~rk~~e~~~~~~~~~~~f~~~~~~~~~w~~~~~~l~~e~~~~el~~~ 420 (628)
T KOG2411|consen 341 ISKSFEEALLSDGLISVEIVVLGAKKYSNSNYKKRKIYESLGKSGFVGLPFPIEHDANKNWFKKFSSLTDEAVAIELIKQ 420 (628)
T ss_pred hhhhhhhhhhcCCccceEEEEeccccccchhhHHhHHHHHHhhcccccceeeeeccchhhhhhhchhhccchHHHHHHHH
Confidence 000 000 000 001011 11222222
Q ss_pred Hccccccc--ccccc------cc-------chhhhcccccccccCccEEEEeCCCc-------------CccccccccCC
Q 012612 316 AKKKFEFL--VKWGC------DL-------QSEHERYLTEEAFGGCPVIVSDYPKE-------------IKAFYMRQNDD 367 (460)
Q Consensus 316 ~~~~~~~~--~~~~~------~l-------~~~~e~~l~~~~~~~~p~~I~~fP~~-------------~~pf~~~~~~~ 367 (460)
.+..-++- ..||. .| ..++.+.+.++.. -.+.||+|||.. ++||+++..+|
T Consensus 421 ~~l~~~Div~~~~g~~~~~~~~LgrlRL~l~~l~~~~l~d~~~-~~~lWVvDFPLF~p~~E~~q~L~StHHPFTaP~~~D 499 (628)
T KOG2411|consen 421 LGLAEGDIVLLCVGPKVSVNTPLGRLRLVLQDLLVKNLRDKSK-FSFLWVVDFPLFSPWEEKNQRLESTHHPFTAPHPKD 499 (628)
T ss_pred hCCCCCCEEEEeccCCccCCCchHHHHHHHHHHHhcccccccc-ceEEEEEeccccCccccCCceeccccCCCCCCChhh
Confidence 21110000 01111 01 1111111222211 257999999984 68999876543
Q ss_pred -------c--cceeeeecccCCceeeecHHHhhhhHHHHHHHHHHc-CCCcccH--HHHHHHHhcCCCCCcceeccHHHH
Q 012612 368 -------G--RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-KLNRDSY--WWYLDLRHYGSVPHAGFGLGFERL 435 (460)
Q Consensus 368 -------~--~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~-~~~~~~~--~~yl~~~~~G~pp~~G~giGidRL 435 (460)
+ -....|||++||+ |++|||.|+|+++.|+..++.. +++.+.+ ++.|+|+.+|+|||||||+|+|||
T Consensus 500 i~~L~s~p~~~rgqhYDlV~NGv-ElGGGSiRIhn~diQr~vLe~iLk~p~~~~s~gHLL~ALd~GaPPHGGiAlGlDRl 578 (628)
T KOG2411|consen 500 IDLLESAPEKIRGQHYDLVVNGV-ELGGGSIRIHNPDIQRYVLEDILKIPEDAESKGHLLNALDMGAPPHGGIALGLDRL 578 (628)
T ss_pred hhHhhcCchhhhcceeeeEEccE-eecCceeEecCHHHHHHHHHHHhcCchhhhhHHHHHHHhhcCCCCCCceeecHHHH
Confidence 1 2456799999998 9999999999999999999854 5554444 589999999999999999999999
Q ss_pred HHHHcCCCCccccccccCCCCC
Q 012612 436 VQFATGVENIRDAIPFPRTPGS 457 (460)
Q Consensus 436 ~m~l~~~~~Irdv~~FPr~~~~ 457 (460)
+|+|||..||||||+||++.+.
T Consensus 579 vaml~~a~sIRDVIAFPKt~~G 600 (628)
T KOG2411|consen 579 VAMLTGAPSIRDVIAFPKTTTG 600 (628)
T ss_pred HHHHcCCCchheeeeccccCCc
Confidence 9999999999999999998654
|
|
| >PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-79 Score=613.50 Aligned_cols=312 Identities=40% Similarity=0.687 Sum_probs=261.0
Q ss_pred hhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeec--cccCCccccccccH
Q 012612 128 REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTT--LDFFEKPAFLTVSG 205 (460)
Q Consensus 128 ~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~--~~~~~~~~~L~~Sp 205 (460)
.++++++||||+|++.++++|++||.|+++||+||.++||+||+||+|++++++|++++|.|.+ .+||++++||++||
T Consensus 2 ~e~~~~~r~l~~r~~~~~~~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~Sp 81 (335)
T PF00152_consen 2 EETRLDNRHLDLRTPAMSSILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQSP 81 (335)
T ss_dssp HHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-SSS
T ss_pred hhhhhhccceeccCcHHHHHHHHHHHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccchhhhcccceecCcCh
Confidence 4677899999999999999999999999999999999999999999999999999999999941 24899999999999
Q ss_pred HHHHH-HHhcCCCceEEEecccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCcccccccccc
Q 012612 206 QLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTW 284 (460)
Q Consensus 206 ql~l~-l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~ 284 (460)
|+||| ++++|++||||||||||||+++|.||+|||||||||++|+|++++|+++|+||+++++++.++....
T Consensus 82 ql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~~~~~~~~~~------- 154 (335)
T PF00152_consen 82 QLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDDLMDLIEELIKYIFKELLENAKEL------- 154 (335)
T ss_dssp HHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccCcHHHhHHHHHHHHHHHHHHHhccCccc-------
Confidence 99998 6778899999999999999999999999999999999999999999999999999999987441100
Q ss_pred ccchhHhhhhhhhcCCCcccCHHHHHHHHHHHcccccc-------------ccccccccchhhhcccccccccCccEEEE
Q 012612 285 IEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF-------------LVKWGCDLQSEHERYLTEEAFGGCPVIVS 351 (460)
Q Consensus 285 ~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~-------------~~~~~~~l~~~~e~~l~~~~~~~~p~~I~ 351 (460)
.+...+..+|++++|.||++++...+.+... ...+|.++...+|+.|++.... .|+||+
T Consensus 155 -------~~~~~~~~~f~ri~~~ea~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~e~~L~~~~~~-~p~fI~ 226 (335)
T PF00152_consen 155 -------SLNIDLPKPFPRITYEEAFEIYGGDKPDLRFDEELDDLAEIEELEFEVGRLLSEEVEPYLVEKYFT-DPVFIT 226 (335)
T ss_dssp -------HTCEESSSS-EEEEHHHHHHHHHHTTTTTTTCHHHHHHHHHHHTTHHCHHHHHHHHHHHHHHHHSS-SEEEEE
T ss_pred -------cccccccCCceEeeehHHHHHhhcccccchhHHHHHHHHHHhcccchHHHHHHHHHHHHhhhcccC-CcEEEE
Confidence 0011233569999999999998876432211 0123556778888877754444 899999
Q ss_pred eCCCcCccccccccCCc-cceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCccc----HHHHHHHHhcCCCCCc
Q 012612 352 DYPKEIKAFYMRQNDDG-RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS----YWWYLDLRHYGSVPHA 426 (460)
Q Consensus 352 ~fP~~~~pf~~~~~~~~-~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~----~~~yl~~~~~G~pp~~ 426 (460)
|||..++|||++.++++ .++++|||+++| +||+|||+|+||+++|++++++.++++++ ++|||+|+++|+||||
T Consensus 227 ~~P~~~~pf~~~~~~~~~~~~~~fdl~~~g-~Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~ 305 (335)
T PF00152_consen 227 DYPAEQSPFYKPPNDDDPGVAERFDLYIPG-GEIANGSQREHDPEELRERFEEQGIDPEEEMPIDEWYLEALKYGMPPHG 305 (335)
T ss_dssp EEBGGGSTTTBBBSSSTTTBBSEEEEEETT-EEEEEEEEB--SHHHHHHHHHHTTHHGGGSHHHGHHHHHHHHTT--SEE
T ss_pred ecccccCcccccccccccccccceeEEEeC-EEEehHHhhhhHHHHHHHHhhhcccccccccchhHhHHHhhhccCcccC
Confidence 99999999999888776 799999999999 59999999999999999999999988777 8999999999999999
Q ss_pred ceeccHHHHHHHHcCCCCccccccccCCC
Q 012612 427 GFGLGFERLVQFATGVENIRDAIPFPRTP 455 (460)
Q Consensus 427 G~giGidRL~m~l~~~~~Irdv~~FPr~~ 455 (460)
|||||+|||+|+++|.+|||||++|||+.
T Consensus 306 G~glG~eRLvm~l~g~~~Irdv~~FPr~~ 334 (335)
T PF00152_consen 306 GFGLGLERLVMLLLGLKNIRDVIPFPRDR 334 (335)
T ss_dssp EEEEEHHHHHHHHHT-SSGGGGSSS-CBT
T ss_pred cceehHHHHHHHHcCCCcHHheecCCCCC
Confidence 99999999999999999999999999986
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B .... |
| >cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-71 Score=557.78 Aligned_cols=296 Identities=21% Similarity=0.299 Sum_probs=248.5
Q ss_pred ChhhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCce
Q 012612 141 TNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNV 219 (460)
Q Consensus 141 ~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rv 219 (460)
++.+++++++||++++++|+||.++||+||+||+|+++++++++++|.+. .++++.++||+||||+|+| ++++|++||
T Consensus 1 ~~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~~-~~~~~~~~yL~~Spql~~k~ll~~g~~~v 79 (329)
T cd00775 1 NEEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITH-HNALDMDLYLRIAPELYLKRLIVGGFERV 79 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCCccceeEEec-cCCCCcceeeccCHHHHHHHHHhcCCCcE
Confidence 35789999999999999999999999999999999988877778899764 3688999999999999986 778899999
Q ss_pred EEEecccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcC
Q 012612 220 YTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAER 299 (460)
Q Consensus 220 feI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~ 299 (460)
|+||||||||++ +.||||||||||||++|.+++|+|+++|++|+++++.+.+.+ ++++.+.- .....
T Consensus 80 f~i~~~FR~E~~-~~rHl~EFt~le~e~~~~~~~~~m~~~e~li~~i~~~~~~~~--~~~~~~~~----------~~~~~ 146 (329)
T cd00775 80 YEIGRNFRNEGI-DLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGKT--KIEYGGKE----------LDFTP 146 (329)
T ss_pred EEEeccccCCCC-CCCCCCceEEEEEeeecCCHHHHHHHHHHHHHHHHHHHhCCc--eeecCCcc----------ccCCC
Confidence 999999999999 589999999999999999999999999999999999887653 23222210 01235
Q ss_pred CCcccCHHHHHHHHHHHcccc-----------------------ccccccccccchhhhcccccccccCccEEEEeCCCc
Q 012612 300 DFVQLSYTDAIELLIKAKKKF-----------------------EFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKE 356 (460)
Q Consensus 300 ~~~~i~~~ea~~~l~~~~~~~-----------------------~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~ 356 (460)
||+++||.||++.+. |+.. +....|+..++..+++++.+.+ + .|+||+|||..
T Consensus 147 pf~rity~eA~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ve~~~-~-~p~fi~~yP~~ 222 (329)
T cd00775 147 PFKRVTMVDALKEKT--GIDFPELDLEQPEELAKLLAKLIKEKIEKPRTLGKLLDKLFEEFVEPTL-I-QPTFIIDHPVE 222 (329)
T ss_pred CceEEEHHHHHHHHh--CCCcccccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcccc-C-CCEEEECCChH
Confidence 899999999987653 2211 1111344445556667666654 4 89999999999
Q ss_pred CccccccccCCccceeeeecccCCceeeecHHHhhhhHHHHHHHHHHc------CCCccc--HHHHHHHHhcCCCCCcce
Q 012612 357 IKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDS--YWWYLDLRHYGSVPHAGF 428 (460)
Q Consensus 357 ~~pf~~~~~~~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~------~~~~~~--~~~yl~~~~~G~pp~~G~ 428 (460)
++|||+..++++++++||||+++|+ ||+||++|+||+++++++++.. +.+++. .+|||+|++||+||||||
T Consensus 223 ~~~f~~~~~~~~~~~~rfdl~~~G~-Ei~~G~~el~d~~e~~~r~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pp~~G~ 301 (329)
T cd00775 223 ISPLAKRHRSNPGLTERFELFICGK-EIANAYTELNDPFDQRERFEEQAKQKEAGDDEAMMMDEDFVTALEYGMPPTGGL 301 (329)
T ss_pred hCcCcCcCCCCCCeeEEEEeEECCE-EEEcccchhCCHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHCCCCCCCcE
Confidence 9999876555668999999999998 9999999999999999998663 555543 489999999999999999
Q ss_pred eccHHHHHHHHcCCCCccccccccCCC
Q 012612 429 GLGFERLVQFATGVENIRDAIPFPRTP 455 (460)
Q Consensus 429 giGidRL~m~l~~~~~Irdv~~FPr~~ 455 (460)
|||+|||+|+++|.+|||||++||++.
T Consensus 302 glGleRL~m~~~g~~~Irdv~~Fp~~~ 328 (329)
T cd00775 302 GIGIDRLVMLLTDSNSIRDVILFPAMR 328 (329)
T ss_pred EecHHHHHHHHcCCCcHHhcccCCCCC
Confidence 999999999999999999999999975
|
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-70 Score=529.54 Aligned_cols=260 Identities=27% Similarity=0.478 Sum_probs=234.4
Q ss_pred HHHHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccC--CccccccccHHHHHH-HHhcCCCceEEEec
Q 012612 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFF--EKPAFLTVSGQLNAE-TYATALSNVYTFGP 224 (460)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~--~~~~~L~~Spql~l~-l~~~g~~rvfeI~~ 224 (460)
+++||++++++|+||.++||+||+||+|+++++|+++++|.+ +|+ |+++||++|||+|+| ++++|++|||+|+|
T Consensus 1 ~~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~---~~~~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~ 77 (269)
T cd00669 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLV---KYNALGLDYYLRISPQLFKKRLMVGGLDRVFEINR 77 (269)
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEe---eecCCCCcEEeecCHHHHHHHHHhcCCCcEEEEec
Confidence 578999999999999999999999999999888888899998 566 899999999999997 56789999999999
Q ss_pred ccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCccc
Q 012612 225 TFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQL 304 (460)
Q Consensus 225 ~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i 304 (460)
|||+|+ .+.||++||||||+|++|.+++|+|+++|++|+++++.+.+++..++... . ..+..||++|
T Consensus 78 ~fR~e~-~~~~hl~EF~~le~e~~~~~~~dvm~~~e~lv~~i~~~~~~~~~~~~~~~-----------~-~~~~~~~~ri 144 (269)
T cd00669 78 NFRNED-LRARHQPEFTMMDLEMAFADYEDVIELTERLVRHLAREVLGVTAVTYGFE-----------L-EDFGLPFPRL 144 (269)
T ss_pred ceeCCC-CCCCcccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcccccccccc-----------c-cccCCCceEe
Confidence 999995 48999999999999999999999999999999999999987765444211 0 1234689999
Q ss_pred CHHHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccC-CccceeeeecccCCcee
Q 012612 305 SYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGE 383 (460)
Q Consensus 305 ~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~-~~~~~~~fDl~~~G~~E 383 (460)
||.||++++. .|+||+|||...+|||++.++ ++++++||||+++|+ |
T Consensus 145 t~~ea~~~~~-------------------------------~p~fi~d~P~~~~~fy~~~~~~~~~~~~~fdl~~~g~-E 192 (269)
T cd00669 145 TYREALERYG-------------------------------QPLFLTDYPAEMHSPLASPHDVNPEIADAFDLFINGV-E 192 (269)
T ss_pred eHHHHHHHhC-------------------------------CceEEECCCcccCCCCCCcCCCCCCeEEEEEEeeCCE-E
Confidence 9999976532 589999999999999887665 457899999999996 9
Q ss_pred eecHHHhhhhHHHHHHHHHHcCCCcc----cHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCC
Q 012612 384 LIGGSQREERLEYLEGRLDELKLNRD----SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 455 (460)
Q Consensus 384 i~~g~~r~~~~~~~~~~~~~~~~~~~----~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~ 455 (460)
|+||++|+||+++|.+++++.+++++ .++|||+|++||+|||||||||+|||+|+++|.+|||||++|||++
T Consensus 193 i~~G~~r~~d~~~l~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pp~~G~glGieRL~m~~~g~~~Irdv~~FPr~~ 268 (269)
T cd00669 193 VGNGSSRLHDPDIQAEVFQEQGINKEAGMEYFEFYLKALEYGLPPHGGLGIGIDRLIMLMTNSPTIREVIAFPKMR 268 (269)
T ss_pred EeeCchhcCCHHHHHHHHHHhCcChhhccccHHHHHHHHHcCCCCCceEeeHHHHHHHHHhCCCcHHHcccCCCCC
Confidence 99999999999999999999999988 8999999999999999999999999999999999999999999986
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >TIGR00462 genX lysyl-tRNA synthetase-like protein GenX | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-70 Score=540.99 Aligned_cols=288 Identities=23% Similarity=0.281 Sum_probs=245.4
Q ss_pred HHHHHHHHHHHHHhhhhCCceeecCceeecC-CCCCCCCceeeecc--ccCCccccccccHHHHHH-HHhcCCCceEEEe
Q 012612 148 ARVRNALAYATHKFFQENGFIWISSPIITAS-DCEGAGEQFCVTTL--DFFEKPAFLTVSGQLNAE-TYATALSNVYTFG 223 (460)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~-~~eg~~~~F~v~~~--~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~ 223 (460)
+++|+.+++++|+||.++||+||+||+|+++ .+++++++|.+... +++++++||+||||+|+| ++++|++||||||
T Consensus 1 l~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfeig 80 (304)
T TIGR00462 1 LRARARLLAAIRAFFAERGVLEVETPLLSPAPVTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQIC 80 (304)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEEc
Confidence 5789999999999999999999999999998 56788999987311 133479999999999987 8899999999999
Q ss_pred cccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcc
Q 012612 224 PTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQ 303 (460)
Q Consensus 224 ~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~ 303 (460)
||||||++ +.||||||||||||++|.|++|+|+++|++|+++++.. ..+|......+++++..+.++..
T Consensus 81 p~FRaE~~-~~rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~i~~~~----------~~~~~~it~~ea~~~~~~~~~~~ 149 (304)
T TIGR00462 81 KVFRNGER-GRRHNPEFTMLEWYRPGFDYHDLMDEVEALLQELLGDP----------FAPWERLSYQEAFLRYAGIDPLT 149 (304)
T ss_pred CceeCCCC-CCCcccHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHhc----------CCCcEEEEHHHHHHHHhCCCccc
Confidence 99999999 58999999999999999999999999999999998752 12333334556666677777777
Q ss_pred cCHHHHHHHHHHHccccccccccccccchhhhccccc---c-cccCccEEEEeCCCcCccccccccCCccceeeeecccC
Q 012612 304 LSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---E-AFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVP 379 (460)
Q Consensus 304 i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~---~-~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~fDl~~~ 379 (460)
.+..++.+++++.|+.. .++.|++..+|+.+.+ + +..++|+||+|||..++|||++..+++++++||||+++
T Consensus 150 ~~~~~~~~~~~~~g~~~----~~~~d~~~~~e~~l~~~ie~~~~~~~p~fi~~yP~~~~~~~~~~~~~~~~~~rfdl~~~ 225 (304)
T TIGR00462 150 ASLDELAAAAAAHGVRA----SEEDDRDDLLDLLFSEKVEPHLGFGRPTFLYDYPASQAALARISPDDPRVAERFELYIK 225 (304)
T ss_pred CCHHHHHHHHHHcCCCC----CCCCChhHHHHHHHHHHHHHhcCCCCCEEEEcCccccCcCccccCCCCCeeEEEEEEEC
Confidence 78888888888877542 3566788888887743 2 22237999999999999998654455678999999999
Q ss_pred CceeeecHHHhhhhHHHHHHHHHH-------cCCCcccH-HHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccc
Q 012612 380 RIGELIGGSQREERLEYLEGRLDE-------LKLNRDSY-WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPF 451 (460)
Q Consensus 380 G~~Ei~~g~~r~~~~~~~~~~~~~-------~~~~~~~~-~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~F 451 (460)
|+ ||+||++|++|+++++++++. .|+++.++ +|||+|++||+|||||||||+|||+|+++|.+|||||++|
T Consensus 226 G~-Ei~~G~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~yl~~~~~G~pP~~G~GiGieRL~m~l~g~~~Ir~vi~F 304 (304)
T TIGR00462 226 GL-ELANGFHELTDAAEQRRRFEADNAERKALGLPRYPLDERFLAALEAGLPECSGVALGVDRLLMLALGADSIDDVLAF 304 (304)
T ss_pred CE-EEeeceeecCCHHHHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHcCCCCCCceEEcHHHHHHHHhCCCchhhcccC
Confidence 97 999999999999999998865 68888888 6899999999999999999999999999999999999998
|
Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown. |
| >cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=495.47 Aligned_cols=271 Identities=29% Similarity=0.454 Sum_probs=217.4
Q ss_pred HHHHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEeccc
Q 012612 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTF 226 (460)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~F 226 (460)
+++||+|++++|+||.++||+||+||+|++++++|+++ |.+......+..+||+||||+||| ++++|++|||+|+|||
T Consensus 1 l~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~~~-f~~~~~~~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~f 79 (280)
T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGARD-FLVPSRLHPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCF 79 (280)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEeCCeeecCCCCCCCC-ceeccccCCCceeecccCHHHHHHHHHhcCcCcEEEeccce
Confidence 57899999999999999999999999999988888766 876422223455679999999998 6789999999999999
Q ss_pred ccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCH
Q 012612 227 RAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSY 306 (460)
Q Consensus 227 R~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~ 306 (460)
|+|++++.|| +||||+|||++|.|++++|+++|++|++++..+.+. ....||+++||
T Consensus 80 R~e~~~~~r~-~Ef~~~e~e~~~~~~~dlm~~~e~li~~i~~~~~~~----------------------~~~~p~~rity 136 (280)
T cd00777 80 RDEDLRADRQ-PEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEVLGV----------------------ELTTPFPRMTY 136 (280)
T ss_pred eCCCCCCCcc-ceeEEeEeeeccCCHHHHHHHHHHHHHHHHHHHhCC----------------------CCCCCCceeeH
Confidence 9999987777 599999999999999999999999999999887542 12358999999
Q ss_pred HHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEe-CCCcCc---cccccccCCccceeeeecccCCce
Q 012612 307 TDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSD-YPKEIK---AFYMRQNDDGRTVAAMDMLVPRIG 382 (460)
Q Consensus 307 ~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~-fP~~~~---pf~~~~~~~~~~~~~fDl~~~G~~ 382 (460)
.||++.+ +. ...|+.|+.. .+.... ..+++++++ ||+... |++ +.++++++++||||+++|+
T Consensus 137 ~eA~~~~---~~----~~~~~~d~~~-~~~~~~----~~~~~~~~~pf~~~~~~~~~~~-~~~~~~~~~~~fdl~~~G~- 202 (280)
T cd00777 137 AEAMERY---GF----KFLWIVDFPL-FEWDEE----EGRLVSAHHPFTAPKEEDLDLL-EKDPEDARAQAYDLVLNGV- 202 (280)
T ss_pred HHHHHHh---CC----CCccccCCcc-cCChhH----HHHHHHHhCCCcCCCcccchhh-hcCCccCeeEEEEEEeCCE-
Confidence 9998763 22 1235544321 000000 112333444 433221 222 2333336899999999997
Q ss_pred eeecHHHhhhhHHHHHHHHHHcCCC----cccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCC
Q 012612 383 ELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 456 (460)
Q Consensus 383 Ei~~g~~r~~~~~~~~~~~~~~~~~----~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~ 456 (460)
||+||++|+||+++|++++++.+++ ++.++|||+|++||+|||||||||+|||+|++||.+|||||++|||+.+
T Consensus 203 Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~a~~~G~pP~~G~giGidRL~m~~~g~~~Irdv~~FPr~~~ 280 (280)
T cd00777 203 ELGGGSIRIHDPDIQEKVFEILGLSEEEAEEKFGFLLEAFKYGAPPHGGIALGLDRLVMLLTGSESIRDVIAFPKTQN 280 (280)
T ss_pred EEccCEEEcCCHHHHHHHHHHcCCChhhhhhhHHHHHHHHHCCCCCCCeEeEhHHHHHHHHcCCCchheEeecCCCCC
Confidence 9999999999999999999999988 4567999999999999999999999999999999999999999999864
|
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. |
| >PRK09350 poxB regulator PoxA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-64 Score=499.56 Aligned_cols=285 Identities=18% Similarity=0.188 Sum_probs=230.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-CCCCCceeeeccccC------CccccccccHHHHHH-HHhcCC
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAGEQFCVTTLDFF------EKPAFLTVSGQLNAE-TYATAL 216 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~~~F~v~~~~~~------~~~~~L~~Spql~l~-l~~~g~ 216 (460)
..++++|++|++++|+||.++||+||+||+|+..+. +....+|.+ +|+ ++.+||+||||++++ ++++|+
T Consensus 2 ~~~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~~f~~---~y~~~~~~~~~~~~L~~SPe~~~kr~la~~~ 78 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVPFET---RFVGPGASQGKTLWLMTSPEYHMKRLLAAGS 78 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCCceee---eeccccccCCcceEEecCHHHHHHHHhhccc
Confidence 468999999999999999999999999999987654 344567876 455 789999999999975 888999
Q ss_pred CceEEEecccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhh
Q 012612 217 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTV 296 (460)
Q Consensus 217 ~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 296 (460)
+|||+||||||||++ +.||++||||||||++|.|++|+|+++|+||++++.. .+|......+++++.
T Consensus 79 ~rvf~i~~~FR~e~~-~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li~~i~~~------------~~~~~i~~~eaf~~~ 145 (306)
T PRK09350 79 GPIFQICKSFRNEEA-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC------------EPAESLSYQQAFLRY 145 (306)
T ss_pred cceEEecceeecCCC-CCCCCcHHHhhhhhhhCCCHHHHHHHHHHHHHHHHhc------------CCceEEEHHHHHHHH
Confidence 999999999999999 8999999999999999999999999999999998753 112222334556666
Q ss_pred hcCCCcccCHHHHHHHHHHHccccccccccccccchhhh----cccccccccCccEEEEeCCCcCccccccccCCcccee
Q 012612 297 AERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHE----RYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVA 372 (460)
Q Consensus 297 ~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e----~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~ 372 (460)
++.+....+..++.+.+.+.|..- ....+.+++...+ ..+.+.+..+.|+||+|||..++|||++.++++++++
T Consensus 146 ~g~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~l~~~~ve~~l~~~~p~fi~~yP~~~~~~a~~~~~~~~~~~ 223 (306)
T PRK09350 146 LGIDPLSADKTQLREVAAKLGLSN--IADEEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQAALAKISTEDHRVAE 223 (306)
T ss_pred hCCCCCcCCHHHHHHHHHHcCCCC--cCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEcCccccCccccccCCCCCeeE
Confidence 666666667777776666655410 0111223333333 3223333323699999999999999876555668999
Q ss_pred eeecccCCceeeecHHHhhhhHHHHHHHHHH-------cCCCcccH-HHHHHHHhcCCCCCcceeccHHHHHHHHcCCCC
Q 012612 373 AMDMLVPRIGELIGGSQREERLEYLEGRLDE-------LKLNRDSY-WWYLDLRHYGSVPHAGFGLGFERLVQFATGVEN 444 (460)
Q Consensus 373 ~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~-------~~~~~~~~-~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~ 444 (460)
||||+++|+ ||+||++|+||+++++++++. .|.++.++ +|||+|++||+|||||||||||||+|++||.+|
T Consensus 224 rfdl~i~G~-Ei~nG~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~~l~a~~~G~pp~~G~giGidRL~m~~~g~~~ 302 (306)
T PRK09350 224 RFEVYFKGI-ELANGFHELTDAREQRQRFEQDNRKRAARGLPQQPIDENLIAALEAGLPDCSGVALGVDRLIMLALGAES 302 (306)
T ss_pred EEEEEECCE-EEecchhhcCCHHHHHHHHHHHHHHHHhCCCCcccCcHHHHHHHHcCCCCCCceEecHHHHHHHHcCCCC
Confidence 999999997 999999999999999999864 67888888 569999999999999999999999999999999
Q ss_pred cccc
Q 012612 445 IRDA 448 (460)
Q Consensus 445 Irdv 448 (460)
||||
T Consensus 303 Irdv 306 (306)
T PRK09350 303 ISEV 306 (306)
T ss_pred cccC
Confidence 9997
|
|
| >COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-54 Score=406.04 Aligned_cols=293 Identities=22% Similarity=0.232 Sum_probs=233.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-CCCCCceeeecc---ccCCccccccccHHHHH-HHHhcCCCc
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAGEQFCVTTL---DFFEKPAFLTVSGQLNA-ETYATALSN 218 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~~~F~v~~~---~~~~~~~~L~~Spql~l-~l~~~g~~r 218 (460)
....+..|+.|++.||.||.++||+||+||.|+.++. +....+|.+... ..-+.+.||++|||+++ +|+++|-++
T Consensus 12 ~~~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAag~~~ 91 (322)
T COG2269 12 SIDNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAAGSGP 91 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCccceeeeeeEEeccCccccceeeeecCcHHHHHHHHHccCCc
Confidence 3456899999999999999999999999999998766 667788987322 11147899999999996 699999999
Q ss_pred eEEEecccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhc
Q 012612 219 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE 298 (460)
Q Consensus 219 vfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~ 298 (460)
+|||++||||++. +.+|+|||||||||..+.||+.+|+.+.+|++.++.... .+.+ ...+.+...+|
T Consensus 92 ifql~kvfRN~E~-G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~~~~---~E~l---------s~~eaF~r~~g 158 (322)
T COG2269 92 IFQLGKVFRNEEM-GRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLECVE---AERL---------SYQEAFLRYLG 158 (322)
T ss_pred chhhhHHHhcccc-cccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHHccCC---ccee---------eHHHHHHHHhC
Confidence 9999999999996 899999999999999999999999999999999876432 1122 22334445566
Q ss_pred CCCcccCHHHHHHHHHHHccccccccccccccchhhhccc----ccccccCccEEEEeCCCcCccccccccCCccceeee
Q 012612 299 RDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYL----TEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAM 374 (460)
Q Consensus 299 ~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l----~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~f 374 (460)
.+.....-.+..+.+++.|+.... +++.+.++.+.+ .++++.++|+||+|||...+.++.....|+.+++||
T Consensus 159 id~l~~~~~~L~~~~~~~~l~~~~----~~~~d~L~~~lf~~~VEP~lg~~rpt~ly~fP~~qaaLA~i~~~D~rVAERF 234 (322)
T COG2269 159 IDPLSADKTELREAAAKLGLSAAT----DEDWDTLLQLLFVEGVEPNLGKERPTFLYHFPASQAALAQISTGDPRVAERF 234 (322)
T ss_pred CCcccccHHHHHHHHHhcCCCCCC----ccCHHHHHHHHHHhhcCcccCCCCceEEEeCcHHHHHhhccCCCCcchhhhh
Confidence 555554444445555555654222 223444444433 334555689999999999999998777778899999
Q ss_pred ecccCCceeeecHHHhhhhHHHHHHHHHH-------cCCCcccH-HHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCcc
Q 012612 375 DMLVPRIGELIGGSQREERLEYLEGRLDE-------LKLNRDSY-WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIR 446 (460)
Q Consensus 375 Dl~~~G~~Ei~~g~~r~~~~~~~~~~~~~-------~~~~~~~~-~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Ir 446 (460)
|||+.|+ ||+||.-+..|.++|+++++. .+...-++ ++||.|+.. ||||+|+++|+|||+|+++|..+|.
T Consensus 235 ElY~kGi-ELaNgf~EltDa~EqrrRfe~dn~~r~~~~l~~~piDe~fl~Ala~-mP~cSGvALG~DRLvmLalg~~~i~ 312 (322)
T COG2269 235 ELYYKGI-ELANGFHELTDAAEQRRRFEQDNKERARRGLPQYPIDEDFLAALAR-MPPCSGVALGFDRLVMLALGAESID 312 (322)
T ss_pred hheeeee-eecccchhcCCHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHh-CCCcccceecHHHHHHHHcCcchHH
Confidence 9999999 999999999999999999853 23333333 679999999 9999999999999999999999999
Q ss_pred ccccccCCC
Q 012612 447 DAIPFPRTP 455 (460)
Q Consensus 447 dv~~FPr~~ 455 (460)
+|++||...
T Consensus 313 ~Vi~f~v~~ 321 (322)
T COG2269 313 DVIAFPVAR 321 (322)
T ss_pred HHhhccccc
Confidence 999999753
|
|
| >cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-21 Score=169.89 Aligned_cols=122 Identities=18% Similarity=0.339 Sum_probs=100.6
Q ss_pred eeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccc-hhhHhccCCCCCcEEEEE
Q 012612 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQ 89 (460)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~-~~~~~~~~l~~g~~V~V~ 89 (460)
+++++++.+. ..|+.|+|+|||+++|.+|+++|++|+|++| .+|+|++.+..+ ++.++. |+.||+|.|+
T Consensus 2 ~~~~~~~~~~------~~g~~V~i~Gwv~~~R~~gk~~Fi~LrD~~g--~~Q~v~~~~~~~~~~~~~~--l~~gs~V~V~ 71 (135)
T cd04317 2 THYCGELRES------HVGQEVTLCGWVQRRRDHGGLIFIDLRDRYG--IVQVVFDPEEAPEFELAEK--LRNESVIQVT 71 (135)
T ss_pred ceehhhCChh------HCCCEEEEEEeEehhcccCCEEEEEEecCCe--eEEEEEeCCchhHHHHHhC--CCCccEEEEE
Confidence 4677787653 5788999999999999999999999999996 499999865433 666777 9999999999
Q ss_pred eeEeecCC-------CCceEEEEEeEEEEEecCCCCCCCCccc---cChhhhhccccccCCChh
Q 012612 90 GNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNT 143 (460)
Q Consensus 90 G~v~~~~~-------~~~~~El~~~~i~ils~~~~~~p~~~~~---~~~~~~r~~r~l~~R~~~ 143 (460)
|++..++. ..+++||.++++++|++| .++|+..+. .+.+...+|||||+|++.
T Consensus 72 G~~~~~~~~~~~~~~~~~~~El~~~~i~vl~~~-~~lP~~~~~~~~~~~~~r~~~R~LdLR~~~ 134 (135)
T cd04317 72 GKVRARPEGTVNPKLPTGEIEVVASELEVLNKA-KTLPFEIDDDVNVSEELRLKYRYLDLRRPK 134 (135)
T ss_pred EEEECCCccccCCCCCCCcEEEEEeEEEEEECC-CCCCCccccccCCCHHHhhhcceeecCCCC
Confidence 99998643 346799999999999999 568886654 246666699999999874
|
These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh |
| >cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-19 Score=152.12 Aligned_cols=100 Identities=27% Similarity=0.500 Sum_probs=88.3
Q ss_pred EEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCC--ccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEE
Q 012612 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (460)
Q Consensus 32 V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~--~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i 109 (460)
|+|+|||+++|.+|+++|++|||++|. +|+|++.+ ...|+.+++ |+.||+|.|+|++.+++...+++||.++++
T Consensus 2 V~v~Gwv~~~R~~gk~~Fi~lrD~~g~--iQ~v~~~~~~~~~~~~~~~--l~~~s~v~V~G~v~~~~~~~~~~Ei~~~~i 77 (103)
T cd04319 2 VTLAGWVYRKREVGKKAFIVLRDSTGI--VQAVFSKDLNEEAYREAKK--VGIESSVIVEGAVKADPRAPGGAEVHGEKL 77 (103)
T ss_pred EEEEEEEEeEEcCCCeEEEEEecCCee--EEEEEeCCCCHHHHHHHhC--CCCCCEEEEEEEEEECCCCCCCEEEEEEEE
Confidence 899999999999999999999999964 99999865 234666777 999999999999999887777899999999
Q ss_pred EEEecCCCCCCCCccccChhhhhccccc
Q 012612 110 VLVGKSDPSYPIQKKRVSREFLRTKAHL 137 (460)
Q Consensus 110 ~ils~~~~~~p~~~~~~~~~~~r~~r~l 137 (460)
+++|+|. ++|++.+. +.++++++|||
T Consensus 78 ~vl~~a~-~~pi~~~~-~~~~~~~~rhL 103 (103)
T cd04319 78 EIIQNVE-FFPITEDA-SDEFLLDVRHL 103 (103)
T ss_pred EEEecCC-CCccCCCC-CHHHHhhccCC
Confidence 9999996 68988664 88899999986
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. |
| >cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.2e-19 Score=148.43 Aligned_cols=102 Identities=19% Similarity=0.368 Sum_probs=86.9
Q ss_pred eeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc---cchhhHhccCCCCCcEEEEE
Q 012612 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQ 89 (460)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V~V~ 89 (460)
++.++... ..|+.|+|+|||+++|.+|+++|++|||++|. +|+|++.+. ..|+.+++ |+.||+|.|+
T Consensus 2 ~~~~l~~~------~~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~~~~--l~~es~V~V~ 71 (108)
T cd04316 2 YSAEITPE------LDGEEVTVAGWVHEIRDLGGIKFVILRDREGI--VQVTAPKKKVDKELFKTVRK--LSRESVISVT 71 (108)
T ss_pred ChhhCchh------hCCCEEEEEEEEEeeeccCCeEEEEEecCCee--EEEEEeCCCCCHHHHHHHhC--CCCcCEEEEE
Confidence 45566543 57899999999999999999999999999974 999998653 23667778 9999999999
Q ss_pred eeEeecCCCCceEEEEEeEEEEEecCCCCCCCCcc
Q 012612 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKK 124 (460)
Q Consensus 90 G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~ 124 (460)
|++.+++...+++||.++++++||+|..++|++.+
T Consensus 72 G~v~~~~~~~~~~Ei~~~~i~il~~~~~~~P~~~~ 106 (108)
T cd04316 72 GTVKAEPKAPNGVEIIPEEIEVLSEAKTPLPLDPT 106 (108)
T ss_pred EEEEeCCCCCCCEEEEEeEEEEEeCCCCCCCcCcC
Confidence 99999887777899999999999999877887643
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes. |
| >cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=146.70 Aligned_cols=102 Identities=23% Similarity=0.338 Sum_probs=82.6
Q ss_pred EEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc---cchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEe
Q 012612 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (460)
Q Consensus 31 ~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~ 107 (460)
+|+|+|||+++|.+|+++|++|+|+++ .+|+|++.+. ..|..+.+ .|+.||+|.|+|++.+++++ ++||.++
T Consensus 1 ~v~v~GwV~~~R~~g~~~Fi~lrd~~~--~lQ~v~~~~~~~~~~~~~~~~-~l~~g~~V~v~G~v~~~~~g--~~El~~~ 75 (108)
T cd04322 1 EVSVAGRIMSKRGSGKLSFADLQDESG--KIQVYVNKDDLGEEEFEDFKK-LLDLGDIIGVTGTPFKTKTG--ELSIFVK 75 (108)
T ss_pred CEEEEEEEEEEecCCCeEEEEEEECCe--EEEEEEECCCCCHHHHHHHHh-cCCCCCEEEEEEEEEecCCC--CEEEEeC
Confidence 389999999999999999999999985 5999998653 23444432 29999999999999998874 7999999
Q ss_pred EEEEEecCCCCCCCCcccc---ChhhhhccccccC
Q 012612 108 KIVLVGKSDPSYPIQKKRV---SREFLRTKAHLRP 139 (460)
Q Consensus 108 ~i~ils~~~~~~p~~~~~~---~~~~~r~~r~l~~ 139 (460)
+++|||+|. +|+|.+.+ +.++.+++||||+
T Consensus 76 ~~~ils~~~--~plP~~~~~~~~~~~r~~~R~ldl 108 (108)
T cd04322 76 EFTLLSKSL--RPLPEKFHGLTDVETRYRQRYLDL 108 (108)
T ss_pred EeEEeeccC--CCCCCCccCcCChhheeecccccC
Confidence 999999997 45554433 4566668999885
|
These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein |
| >cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.8e-18 Score=161.02 Aligned_cols=268 Identities=16% Similarity=0.121 Sum_probs=173.4
Q ss_pred HHHHHHHhhh-----hCCceeecCceeecCCCC------CCCCceeeeccccCCccccccccHHHHHHH-H-hcCC---C
Q 012612 154 LAYATHKFFQ-----ENGFIWISSPIITASDCE------GAGEQFCVTTLDFFEKPAFLTVSGQLNAET-Y-ATAL---S 217 (460)
Q Consensus 154 i~~~iR~ff~-----~~gF~EV~TPiL~~~~~e------g~~~~F~v~~~~~~~~~~~L~~Spql~l~l-~-~~g~---~ 217 (460)
.|..|++||. +.+.+.|..|.++....+ |...|-..+..+.-+..+-..+|-.-||++ + --|| +
T Consensus 3 aI~~iK~~F~~~L~~~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~f~~k~~~~~~~eiVhSLAKWKR~aL~~y~f~~ge 82 (309)
T cd00645 3 AIKFIKDFFQDNLAKELNLIRVSAPLFVEKGSGLNDNLNGVEKPVSFKVKALPDATLEVVHSLAKWKRLALARYGFSLGE 82 (309)
T ss_pred hHHHHHHHHHHHHHHHhCeEEecCCeEEecCCCCccCCCCcccceEeecCCCCCceeEEeeehHHHHHHHHHhcCCCCCc
Confidence 3556666664 469999999999975553 222332222223335667788899999974 3 3455 6
Q ss_pred ceEEEeccccc-CCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhh
Q 012612 218 NVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTV 296 (460)
Q Consensus 218 rvfeI~~~FR~-E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 296 (460)
.+|+=..+.|. |+. +..|.----|.|||.....-+.-++.+.+.++.++..+......-...+ ..+...
T Consensus 83 GlytdMnAiR~dE~l-dn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~ik~te~~~~~~y---------~~~~~~ 152 (309)
T cd00645 83 GLYTDMNAIRPDEDL-DNIHSIYVDQWDWEKVISKGERNLETLKETVNKIYKAIKETELEVNEKY---------PQLEPI 152 (309)
T ss_pred eeccCCccccCCccc-CccceeEeccccHHhhcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHc---------hhhhhc
Confidence 68998988885 565 7899999999999998776666677777777777766543211000000 011112
Q ss_pred hcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCc---cccccccCCccceee
Q 012612 297 AERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK---AFYMRQNDDGRTVAA 373 (460)
Q Consensus 297 ~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~---pf~~~~~~~~~~~~~ 373 (460)
+...+.=+|.+|..+. +...-..+.|..++..+ +.|||+.--..++ |--.+..+.+.+..+
T Consensus 153 Lp~~i~FitsqeL~~~-------------YP~l~~keRE~~i~ke~---gaVFi~~IG~~L~~g~~Hd~RapDYDDW~LN 216 (309)
T cd00645 153 LPEEITFITSQELEDR-------------YPDLTPKEREDAICKEH---GAVFIIGIGGKLSDGKKHDGRAPDYDDWTLN 216 (309)
T ss_pred CCCceEEecHHHHHHH-------------CCCCCHHHHHHHHHHHh---CcEEEEeccCcCCCCCcCCCCCCCCcCcccc
Confidence 2222222333443221 11111234555555544 4677776554432 222222233445555
Q ss_pred eecccC------CceeeecHHHhhhhHHHHHHHHHHcC-CCcccHHHHHHHHhcC-CCCCcceeccHHHHHHHHcCCCCc
Q 012612 374 MDMLVP------RIGELIGGSQREERLEYLEGRLDELK-LNRDSYWWYLDLRHYG-SVPHAGFGLGFERLVQFATGVENI 445 (460)
Q Consensus 374 fDl~~~------G~~Ei~~g~~r~~~~~~~~~~~~~~~-~~~~~~~~yl~~~~~G-~pp~~G~giGidRL~m~l~~~~~I 445 (460)
=|+++- .+ ||.++++|.+. +.+.++++..| .+...+.| ++++..| +|||+|+|||+|||+|+|||..+|
T Consensus 217 GDil~w~~~l~~a~-ELSSmGiRVde-e~L~~Ql~~~g~~dr~~l~~-h~~ll~g~LP~TiGgGIGqsRL~M~LL~k~HI 293 (309)
T cd00645 217 GDILVWNPVLQRAF-ELSSMGIRVDE-ESLQKQLKLAGDEDRLELPF-HKMLLNGELPQTIGGGIGQSRLCMFLLQKAHI 293 (309)
T ss_pred ceEEEEchhcCcee-eecCcceEecH-HHHHHHHHHcCCCccccCHH-HHHHHcCCCCccccccccHHHHHHHHhccchh
Confidence 555432 56 99999999999 99999999988 56667776 9999999 999999999999999999999999
Q ss_pred ccccc
Q 012612 446 RDAIP 450 (460)
Q Consensus 446 rdv~~ 450 (460)
.+|++
T Consensus 294 gEVqa 298 (309)
T cd00645 294 GEVQA 298 (309)
T ss_pred cceee
Confidence 99975
|
AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB. |
| >PTZ00213 asparagine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-17 Score=159.26 Aligned_cols=278 Identities=14% Similarity=0.101 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHHHHhhhh-----CCceeecCceeecCCCCCC------CCceeeeccccCCccccccccHHHHHHHH--
Q 012612 146 AVARVRNALAYATHKFFQE-----NGFIWISSPIITASDCEGA------GEQFCVTTLDFFEKPAFLTVSGQLNAETY-- 212 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~-----~gF~EV~TPiL~~~~~eg~------~~~F~v~~~~~~~~~~~L~~Spql~l~l~-- 212 (460)
..++...+.|..|++||.. .+.+.|..|+++....+-+ ..+-.+...+.-+..+-..+|-.-||++.
T Consensus 6 ~~~~~~q~aI~~iK~~F~~~L~~~LnL~rVsaPLfv~~~~GlnDnLnG~ErpV~f~~k~~~~~~~evVhSLAKWKR~aL~ 85 (348)
T PTZ00213 6 SAYIDLQEQILKVKQIFSEALAKELNLIRVEAPLLAEVGDGTQDNLSGVEKAVQVHVKGIPNSVFEVVHSLAKWKRLTLG 85 (348)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCeeEecCCeEEcCCCCcccCCCCeeeeeEEecCCCCCceeEEehhhHHHHHHHHH
Confidence 3455566778888888854 6999999999997544211 12222222233356677788888899743
Q ss_pred hcCC---CceEEEecccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchh
Q 012612 213 ATAL---SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGI 289 (460)
Q Consensus 213 ~~g~---~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~ 289 (460)
--+| +.+|+=+++.|.++.-+..|.----|.|||+....-+.-++.+.+.++.++..+......-...+.
T Consensus 86 ~y~f~~geGlytdMnAiR~dE~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~ik~te~~~~~~yp------- 158 (348)
T PTZ00213 86 EHKFPVGEGIYTDMNALRVEEELDNIHSVYVDQWDWEMVIAPADRNLEYLKNTVRRLYAAIRKTEEAICNEYP------- 158 (348)
T ss_pred hcCCCCCceeeeccccccCCcccCccceeEeccccHHHhcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHch-------
Confidence 3455 569998888885433478999999999999987766666777777777776665432110000000
Q ss_pred HhhhhhhhcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCc---cccccccC
Q 012612 290 IDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK---AFYMRQND 366 (460)
Q Consensus 290 ~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~---pf~~~~~~ 366 (460)
.+...+...+.=++.+|..+. +...-..+.|..++..+ ..|||+.--..++ |--.+..+
T Consensus 159 --~l~~~Lp~~I~FitsqeL~~~-------------YP~lt~keRE~~i~ke~---gaVFi~~IG~~L~~G~~Hd~RApD 220 (348)
T PTZ00213 159 --NLKRILPKEITFLHTEHLLKM-------------YPNLSPKEREREIVKKY---GAVFLIGIGCKLSSGDTHDLRAPD 220 (348)
T ss_pred --hhhhcCCCceEEecHHHHHHH-------------CCCCCHHHHHHHHHHHh---CcEEEEeccCcCCCCCcCCCCCCC
Confidence 011111111111222221111 00000112222222222 2233333221110 00000000
Q ss_pred Cccc-------------------------eeeeecc-----cCCceeeecHHHhhhhHHHHHHHHHHcC-CCcccHHHHH
Q 012612 367 DGRT-------------------------VAAMDML-----VPRIGELIGGSQREERLEYLEGRLDELK-LNRDSYWWYL 415 (460)
Q Consensus 367 ~~~~-------------------------~~~fDl~-----~~G~~Ei~~g~~r~~~~~~~~~~~~~~~-~~~~~~~~yl 415 (460)
.+.+ ..+=|++ +.--.||.++++|+ +++.+.++++..| .+...+.||+
T Consensus 221 YDDW~t~~~~~~~~~~~~~~~~~~~~~~~gLNGDilvw~~~l~~a~ELSSmGiRV-d~esL~~Qlk~~g~~dr~~l~~h~ 299 (348)
T PTZ00213 221 YDDWSSPVSASKIGFPTADPTMNSLMSLQGLNGDILVYNPVLDDVLELSSMGIRV-DAEALRRQLEITNNTDRLKCMWHQ 299 (348)
T ss_pred cccccccccccccccccccccccccccccCccceEEEechhcCceeecCCcceEE-cHHHHHHHHHHcCCCccccCHHHH
Confidence 0011 1222332 22225999999999 9999999999998 5777889999
Q ss_pred HHHhcC-CCCCcceeccHHHHHHHHcCCCCcccccc
Q 012612 416 DLRHYG-SVPHAGFGLGFERLVQFATGVENIRDAIP 450 (460)
Q Consensus 416 ~~~~~G-~pp~~G~giGidRL~m~l~~~~~Irdv~~ 450 (460)
+ +..| +|+|+|+|||+|||+|+|||..+|.||++
T Consensus 300 ~-ll~g~LP~TiGGGIGqsRL~M~LL~k~HIgEVQ~ 334 (348)
T PTZ00213 300 M-LLNGELPQTIGGGIGQSRLCMFMLRKKHIGEVQC 334 (348)
T ss_pred H-HHcCCCCCcccccccHHHHHHHHhCcchhcceee
Confidence 9 6667 99999999999999999999999999975
|
|
| >PRK05425 asparagine synthetase AsnA; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-17 Score=157.97 Aligned_cols=273 Identities=15% Similarity=0.083 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHHHhhh-----hCCceeecCceeecCCCCCC------CCceeeeccccCCccccccccHHHHHHHHh--c
Q 012612 148 ARVRNALAYATHKFFQ-----ENGFIWISSPIITASDCEGA------GEQFCVTTLDFFEKPAFLTVSGQLNAETYA--T 214 (460)
Q Consensus 148 ~~~Rs~i~~~iR~ff~-----~~gF~EV~TPiL~~~~~eg~------~~~F~v~~~~~~~~~~~L~~Spql~l~l~~--~ 214 (460)
++.-...++.|+++|. +.+.+.|..|.++....+-+ ..|-.....+.-+..+-..+|-.-||++.. -
T Consensus 8 ~~~tq~aI~~iK~~F~~~L~~~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~F~~k~~~~~~~eiVhSLAKWKR~aL~~y 87 (327)
T PRK05425 8 FIETQQAISFVKDFFERQLAKKLNLIRVSAPLFVRVGSGLNDNLNGVEKPVSFKVKDLPDATFEVVHSLAKWKRLALKRY 87 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCeeEecCCeEEcCCCCcccCCCCeecceEeeccCCCCCeeEEEeehHHHHHHHHHhc
Confidence 3334455666676664 46999999999997554321 122222111333456778888888997443 3
Q ss_pred CC---CceEEEeccccc-CCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhH
Q 012612 215 AL---SNVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGII 290 (460)
Q Consensus 215 g~---~rvfeI~~~FR~-E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~ 290 (460)
+| +.+|+=..+.|. |+. +..|.----|.|||.....-+.-++.+.+.++.++..+......-...+.
T Consensus 88 ~f~~geGlytdMnAiR~dE~l-d~~HS~yVDQWDWEkvI~~~~Rn~~~Lk~tV~~Iy~~ik~te~~~~~~y~-------- 158 (327)
T PRK05425 88 GFSAGEGLYTDMNAIRPDEDL-DNTHSVYVDQWDWEKVIGKEERNLDYLKETVEKIYKAIKATEKAVSKKYP-------- 158 (327)
T ss_pred CCCCCceeccCCccccCCccc-CcccceEeccccHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhCc--------
Confidence 66 468998888885 565 78999999999999987766666777777777777665432110000000
Q ss_pred hhhhhhhcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCc---cccccccCC
Q 012612 291 DRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK---AFYMRQNDD 367 (460)
Q Consensus 291 ~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~---pf~~~~~~~ 367 (460)
.+ +.+...+.=||.+|..+. +...-..+.|..++..+ +.|||+.--..++ |-..+..+.
T Consensus 159 -~~-~~Lp~~i~FitsqeL~~~-------------YP~l~~keRE~~i~ke~---gaVFi~~IG~~L~~g~~Hd~RapDY 220 (327)
T PRK05425 159 -LL-PFLPEEITFITSQELEDR-------------YPDLTPKEREDAIAKEY---GAVFLIGIGGKLSDGKPHDGRAPDY 220 (327)
T ss_pred -cc-ccCCCceEEecHHHHHHH-------------CCCCCHHHHHHHHHHHh---CcEEEEeccCcCCCCCcCCCCCCCC
Confidence 00 111111122333342211 11112234455555544 4677776554432 222222233
Q ss_pred ccceeeeecccC------CceeeecHHHhhhhHHHHHHHHHHcC-CCcccHHHHHHHHhcC-CCCCcceeccHHHHHHHH
Q 012612 368 GRTVAAMDMLVP------RIGELIGGSQREERLEYLEGRLDELK-LNRDSYWWYLDLRHYG-SVPHAGFGLGFERLVQFA 439 (460)
Q Consensus 368 ~~~~~~fDl~~~------G~~Ei~~g~~r~~~~~~~~~~~~~~~-~~~~~~~~yl~~~~~G-~pp~~G~giGidRL~m~l 439 (460)
+.+..+=||++- .+ ||.++++|++ ++.+.++++..| .+...+.||+++ ..| +|||+|+|||+|||+|+|
T Consensus 221 DDW~LNGDilvw~~~l~~a~-ELSSmGiRVd-~e~L~~Qlk~~g~~dr~~l~~h~~l-l~g~LP~TiGgGIGqsRL~M~L 297 (327)
T PRK05425 221 DDWGLNGDILVWNPVLDDAF-ELSSMGIRVD-EEALKRQLKLTGDEDRLELEWHQAL-LNGELPLTIGGGIGQSRLCMLL 297 (327)
T ss_pred cCcccCceEEEEccccCcee-eecCcceEec-HHHHHHHHHHcCCCccccCHHHHHH-HhCCCCCcccccccHHHHHHHH
Confidence 445555555432 56 9999999999 999999999998 577788999999 667 999999999999999999
Q ss_pred cCCCCcccccc
Q 012612 440 TGVENIRDAIP 450 (460)
Q Consensus 440 ~~~~~Irdv~~ 450 (460)
||..+|.||++
T Consensus 298 L~k~HIgEVq~ 308 (327)
T PRK05425 298 LQKAHIGEVQA 308 (327)
T ss_pred hccchhccccc
Confidence 99999999975
|
|
| >cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.2e-17 Score=129.66 Aligned_cols=81 Identities=41% Similarity=0.808 Sum_probs=73.4
Q ss_pred EEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEE
Q 012612 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVL 111 (460)
Q Consensus 32 V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~i 111 (460)
|+|+|||+++|.+|+++|++|||+++.+++||+++++...|+.+++ |+.||+|.|+|.+.+++.+++++||.++++++
T Consensus 2 v~v~Gwv~~~R~~g~~~Fi~LrD~s~~~~lQvv~~~~~~~~~~~~~--l~~gs~V~v~G~v~~~~~~~~~~El~~~~i~i 79 (82)
T cd04318 2 VTVNGWVRSVRDSKKISFIELNDGSCLKNLQVVVDKELTNFKEILK--LSTGSSIRVEGVLVKSPGAKQPFELQAEKIEV 79 (82)
T ss_pred EEEEEeEEEEEcCCcEEEEEEECCCCccCEEEEEeCcccCHHHHhc--CCCceEEEEEEEEEeCCCCCCCEEEEEEEEEE
Confidence 7999999999999999999999999866899999877655777788 99999999999999998777899999999999
Q ss_pred Eec
Q 012612 112 VGK 114 (460)
Q Consensus 112 ls~ 114 (460)
++.
T Consensus 80 l~~ 82 (82)
T cd04318 80 LGE 82 (82)
T ss_pred ecC
Confidence 863
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial |
| >cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.3e-17 Score=134.43 Aligned_cols=89 Identities=24% Similarity=0.377 Sum_probs=75.1
Q ss_pred EEEEEEEEeeeccCC-CeEEEEEEcCCCccceEEEEeCCc-----cchhhHhccCCCCCcEEEEEeeEeecCCC-----C
Q 012612 31 MIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-----EGYDQVKSGLITTGASIWIQGNVVPSQGS-----K 99 (460)
Q Consensus 31 ~V~v~GwV~~~R~~g-~~~Fv~lrD~~~~~~iQvv~~~~~-----~~~~~~~~~~l~~g~~V~V~G~v~~~~~~-----~ 99 (460)
.|+|+|||+++|.+| +++|++|||++| .+||+++.+. ..++.++. |+.||+|.|+|++.+++.. +
T Consensus 1 ~V~i~Gwv~~~R~~g~k~~Fi~LrD~sg--~iQ~v~~~~~~~~~~~~~~~~~~--l~~es~V~V~G~v~~~~~~~~~~~~ 76 (102)
T cd04320 1 EVLIRARVHTSRAQGAKLAFLVLRQQGY--TIQGVLAASAEGVSKQMVKWAGS--LSKESIVDVEGTVKKPEEPIKSCTQ 76 (102)
T ss_pred CEEEEEEEEEeecCCCceEEEEEecCCc--eEEEEEeCCcccCCHHHHHHHhc--CCCccEEEEEEEEECCCCcccCCCc
Confidence 389999999999998 999999999996 4999998653 12445677 9999999999999987552 2
Q ss_pred ceEEEEEeEEEEEecCCCCCCCCc
Q 012612 100 QKVELKVNKIVLVGKSDPSYPIQK 123 (460)
Q Consensus 100 ~~~El~~~~i~ils~~~~~~p~~~ 123 (460)
+++||.++++++|++|..++|++.
T Consensus 77 ~~~El~~~~i~il~~~~~~~P~~~ 100 (102)
T cd04320 77 QDVELHIEKIYVVSEAAEPLPFQL 100 (102)
T ss_pred CcEEEEEEEEEEEecCCCCCCCCC
Confidence 689999999999999976688754
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. |
| >TIGR00669 asnA aspartate--ammonia ligase, AsnA-type | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-16 Score=152.60 Aligned_cols=275 Identities=15% Similarity=0.103 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHHhhhh-----CCceeecCceeecCCCC------CCCCceeeeccccCCccccccccHHHHHHHHh--
Q 012612 147 VARVRNALAYATHKFFQE-----NGFIWISSPIITASDCE------GAGEQFCVTTLDFFEKPAFLTVSGQLNAETYA-- 213 (460)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~-----~gF~EV~TPiL~~~~~e------g~~~~F~v~~~~~~~~~~~L~~Spql~l~l~~-- 213 (460)
.++.-...|..|++||.. .+.++|..|.++....+ |...|-..+..+.-+..+-..+|-.-||++..
T Consensus 4 ~~~~tq~aI~~iK~~F~~~L~~~L~L~rVsAPLfv~~~sGlnD~LnG~ErpV~f~~k~~~~~~~evVhSLAKWKR~aL~~ 83 (330)
T TIGR00669 4 AFILQQQQISFVKSTFTQQLEERLGLIEVQGPILSQVGDGTQDNLSGREKAVQVKVKAIPDAQFEVVHSLAKWKRHTLAR 83 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCeEEeccceEEcCCCCCcCCCCCeecceEeecCCCCCceeEEehhhHHHHHHHHHh
Confidence 455566677888888854 69999999999975442 11222222222333567778889999998443
Q ss_pred cCC---CceEEEeccccc-CCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchh
Q 012612 214 TAL---SNVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGI 289 (460)
Q Consensus 214 ~g~---~rvfeI~~~FR~-E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~ 289 (460)
-+| +.+|+=..+-|. |+.-+..|.----|.|||.....-+.-++.+.+.++.++..+......-...+
T Consensus 84 y~f~~geGlytdMnAiR~De~~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~Iy~~ik~te~~~~~~y-------- 155 (330)
T TIGR00669 84 HDFSAGEGLFVHMKALRPDEDRLDPLHSVYVDQWDWEKVMPDGERNFAYLKSTVEAIYAAIRATEAAVSERF-------- 155 (330)
T ss_pred cCCCCCceeeeccccccCCccccCccceeeeccccHHHhcCcccccHHHHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence 366 569998988885 56247899999999999998776666677777777777766543211000000
Q ss_pred HhhhhhhhcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCc---cccccccC
Q 012612 290 IDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK---AFYMRQND 366 (460)
Q Consensus 290 ~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~---pf~~~~~~ 366 (460)
.+...+..++.=+|.+|. .+. +...-..+.|..++..+ ..|||+.--..++ |--.+..+
T Consensus 156 --~l~~~Lp~~I~FitsqeL---~~~----------YP~lt~keRE~~i~ke~---gaVFi~~IG~~L~~G~~Hd~RApD 217 (330)
T TIGR00669 156 --GLAPFLPDQIHFVHSEEL---VSR----------YPDLDSKGRERAICKEL---GAVFLIGIGGKLSDGKPHDVRAPD 217 (330)
T ss_pred --CccccCCCceEEecHHHH---HHH----------CCCCCHHHHHHHHHHHh---CcEEEEeccCcCCCCCcCCCCCCC
Confidence 011111111122233332 221 11111234455555544 3577766544332 11111112
Q ss_pred Cccce---------eeeecccC------CceeeecHHHhhhhHHHHHHHHHHcC-CCcccHHHHHHHHhcC-CCCCccee
Q 012612 367 DGRTV---------AAMDMLVP------RIGELIGGSQREERLEYLEGRLDELK-LNRDSYWWYLDLRHYG-SVPHAGFG 429 (460)
Q Consensus 367 ~~~~~---------~~fDl~~~------G~~Ei~~g~~r~~~~~~~~~~~~~~~-~~~~~~~~yl~~~~~G-~pp~~G~g 429 (460)
.+.+. .+=|+++- .+ ||.+.+.|. |.+.+.++++..| .+...+.||+++ ..| +|||+|+|
T Consensus 218 YDDW~t~~~~~~~gLNGDilvw~~vl~~a~-ElSSMGIRV-d~~~L~~Qlk~~g~~dr~~l~~h~el-l~g~LP~TiGGG 294 (330)
T TIGR00669 218 YDDWTTPSELGYKGLNGDILVWNPVLGDAF-ELSSMGIRV-DEDALRHQLALTGDEDRLELEWHQDL-LNGELPQTIGGG 294 (330)
T ss_pred cccccccccccccCcCceEEEEchhcCcee-eeecceeEE-CHHHHHHHHHHcCCCccccCHHHHHH-HcCCCCcccccc
Confidence 22233 34444332 46 999999999 6777778888888 677889999999 667 99999999
Q ss_pred ccHHHHHHHHcCCCCcccccc
Q 012612 430 LGFERLVQFATGVENIRDAIP 450 (460)
Q Consensus 430 iGidRL~m~l~~~~~Irdv~~ 450 (460)
||+|||+|+|||..+|.||++
T Consensus 295 IGqsRL~MfLL~k~HIgEVQ~ 315 (330)
T TIGR00669 295 IGQSRLAMLLLQLKHIGEVQA 315 (330)
T ss_pred ccHHHHHHHHhccccccceee
Confidence 999999999999999999975
|
The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer. |
| >cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=128.68 Aligned_cols=80 Identities=20% Similarity=0.402 Sum_probs=71.2
Q ss_pred EEEEEEEeeecc-CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCC----ceEEEEE
Q 012612 32 IVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSK----QKVELKV 106 (460)
Q Consensus 32 V~v~GwV~~~R~-~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~----~~~El~~ 106 (460)
|+|+|||+++|. +|+++|++|||++| ..+||+++++...|+.+++ |+.||+|.|+|++.+++.+. +++||.+
T Consensus 2 V~v~Gwv~~~R~~~~~~~Fi~LrD~~g-~~iQvv~~~~~~~~~~~~~--l~~~s~V~V~G~v~~~~~~~~~~~~~~Ei~~ 78 (86)
T cd04321 2 VTLNGWIDRKPRIVKKLSFADLRDPNG-DIIQLVSTAKKDAFSLLKS--ITAESPVQVRGKLQLKEAKSSEKNDEWELVV 78 (86)
T ss_pred EEEEEeEeeEeCCCCceEEEEEECCCC-CEEEEEECCCHHHHHHHhc--CCCCcEEEEEEEEEeCCCcCCCCCCCEEEEE
Confidence 899999999999 69999999999998 4699999876556777888 99999999999999988654 7899999
Q ss_pred eEEEEEec
Q 012612 107 NKIVLVGK 114 (460)
Q Consensus 107 ~~i~ils~ 114 (460)
+++++|++
T Consensus 79 ~~i~il~~ 86 (86)
T cd04321 79 DDIQTLNA 86 (86)
T ss_pred EEEEEecC
Confidence 99999984
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for |
| >cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs | Back alignment and domain information |
|---|
Probab=99.68 E-value=4e-16 Score=125.57 Aligned_cols=79 Identities=29% Similarity=0.574 Sum_probs=70.7
Q ss_pred EEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccc-hhhHhccCCCCCcEEEEEeeEeecCCC---CceEEEEEe
Q 012612 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQGNVVPSQGS---KQKVELKVN 107 (460)
Q Consensus 32 V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~-~~~~~~~~l~~g~~V~V~G~v~~~~~~---~~~~El~~~ 107 (460)
|+|+|||+++|.+|+++|++|||+++. +|++++.+... ++.+++ |+.||+|.|+|++.+++.+ .+++||.++
T Consensus 2 V~v~Gwv~~~R~~g~~~Fi~LrD~~~~--iQ~v~~~~~~~~~~~~~~--l~~es~V~V~G~v~~~~~~~~~~~~~Ei~~~ 77 (84)
T cd04323 2 VKVFGWVHRLRSQKKLMFLVLRDGTGF--LQCVLSKKLVTEFYDAKS--LTQESSVEVTGEVKEDPRAKQAPGGYELQVD 77 (84)
T ss_pred EEEEEEEEEEecCCCcEEEEEEcCCeE--EEEEEcCCcchhHHHHhc--CCCcCEEEEEEEEEECCcccCCCCCEEEEEE
Confidence 899999999999999999999999975 99999865433 666778 9999999999999999877 788999999
Q ss_pred EEEEEec
Q 012612 108 KIVLVGK 114 (460)
Q Consensus 108 ~i~ils~ 114 (460)
++++||+
T Consensus 78 ~i~vl~~ 84 (84)
T cd04323 78 YLEIIGE 84 (84)
T ss_pred EEEEEcC
Confidence 9999985
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with |
| >cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=123.06 Aligned_cols=79 Identities=25% Similarity=0.564 Sum_probs=69.7
Q ss_pred EEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccc--hhhHhccCCCCCcEEEEEeeEeecCC---CCceEEEEE
Q 012612 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG--YDQVKSGLITTGASIWIQGNVVPSQG---SKQKVELKV 106 (460)
Q Consensus 32 V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~--~~~~~~~~l~~g~~V~V~G~v~~~~~---~~~~~El~~ 106 (460)
|+|+|||+++|.+|+++|++|||+++ .+|++++.+..+ ++.++. |+.||+|.|+|++.+++. ..+++||.+
T Consensus 2 V~i~Gwv~~~R~~g~~~Fi~Lrd~~~--~iQ~v~~~~~~~~~~~~~~~--l~~~s~V~v~G~~~~~~~~~~~~~~~El~~ 77 (85)
T cd04100 2 VTLAGWVHSRRDHGGLIFIDLRDGSG--IVQVVVNKEELGEFFEEAEK--LRTESVVGVTGTVVKRPEGNLATGEIELQA 77 (85)
T ss_pred EEEEEEEehhccCCCEEEEEEEeCCe--eEEEEEECCcChHHHHHHhC--CCCCCEEEEEeEEEECCCCCCCCCCEEEEE
Confidence 89999999999999999999999995 599999876533 556777 999999999999999885 467899999
Q ss_pred eEEEEEec
Q 012612 107 NKIVLVGK 114 (460)
Q Consensus 107 ~~i~ils~ 114 (460)
+++++|++
T Consensus 78 ~~i~il~~ 85 (85)
T cd04100 78 EELEVLSK 85 (85)
T ss_pred eEEEEECC
Confidence 99999985
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A |
| >PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=147.55 Aligned_cols=108 Identities=23% Similarity=0.343 Sum_probs=79.0
Q ss_pred CChhhhHHHHH-----HHHHHHHHHHhhhhCCceeecCceeecCCC------CCCCCceeeeccccCCcccccc--ccHH
Q 012612 140 RTNTFGAVARV-----RNALAYATHKFFQENGFIWISSPIITASDC------EGAGEQFCVTTLDFFEKPAFLT--VSGQ 206 (460)
Q Consensus 140 R~~~~~~~~~~-----Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~------eg~~~~F~v~~~~~~~~~~~L~--~Spq 206 (460)
|.+..++++.. .+.+.++||++|...||.||.||+|+.... .++.+ +. ...-..+...+|+ ..|+
T Consensus 190 r~~~~~~~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~-i~-~~my~ideel~LRpsLtPs 267 (417)
T PRK09537 190 RKNDLKQMYEEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTE-LS-KQIFRVDKNFCLRPMLAPG 267 (417)
T ss_pred cchhhHHhhccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCccc-ch-hhheeeCCceEehhhhHHH
Confidence 77889999999 999999999999999999999999975321 11111 10 0000124567888 5777
Q ss_pred HHHHHHh-----cCCCceEEEecccccCCCCCCCCCCccceeeeeecCC
Q 012612 207 LNAETYA-----TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 250 (460)
Q Consensus 207 l~l~l~~-----~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~ 250 (460)
++..+.. ..--|+|+||+|||+|.. +.+|++||+|++++....
T Consensus 268 Llr~la~n~k~~~~P~RIFEIG~VFR~E~~-g~~hlrEf~Ql~~~iiGs 315 (417)
T PRK09537 268 LYNYLRKLDRILPDPIKIFEIGPCYRKESD-GKEHLEEFTMVNFCQMGS 315 (417)
T ss_pred HHHHHHhhhhcccCCeeEEEEeceEecCCC-CCCCcceEEEEEEEEeCC
Confidence 7654321 112479999999999986 678999999999998754
|
|
| >PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-14 Score=138.54 Aligned_cols=191 Identities=17% Similarity=0.254 Sum_probs=119.5
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecC--------CC-C-C---CCCceeeeccccC--CccccccccHHHH-HHHH---
Q 012612 152 NALAYATHKFFQENGFIWISSPIITAS--------DC-E-G---AGEQFCVTTLDFF--EKPAFLTVSGQLN-AETY--- 212 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~--------~~-e-g---~~~~F~v~~~~~~--~~~~~L~~Spql~-l~l~--- 212 (460)
+++.+.||++|...||.|+.+|.+.+. .+ + . ..+.|.+.. ..- .....||++---. .+.|
T Consensus 20 ~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~-p~~~~~~~~vLRThts~~~~~~l~~~ 98 (247)
T PF01409_consen 20 TKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISN-PYSAEEDYSVLRTHTSPGQLRTLNKH 98 (247)
T ss_dssp HHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCS-SSBCECSSEEE-SSTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeec-cccccchhhhhhhhhhHHHHHHHHHh
Confidence 568889999999999999999999541 11 1 1 123343321 111 4556677533222 2444
Q ss_pred hcCCCceEEEecccccCCCCCCCCCCccceeeeeecCC--CHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhH
Q 012612 213 ATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGII 290 (460)
Q Consensus 213 ~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~--~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~ 290 (460)
...=-|+|+||+|||+|.. +.+|+|+|+|+|.-.... ++.++...++.++++++..
T Consensus 99 ~~~p~kif~iG~VyR~D~~-D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lfG~--------------------- 156 (247)
T PF01409_consen 99 RPPPIKIFEIGKVYRRDEI-DATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELFGI--------------------- 156 (247)
T ss_dssp SHSSEEEEEEEEEESSSCS-BSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHHTT---------------------
T ss_pred cCCCeEEEecCceEecCCc-ccccCccceeEeeEEEecccchhHHHHHHHHHHHHHhhc---------------------
Confidence 2224689999999999988 689999999999876654 5677766666666655311
Q ss_pred hhhhhhhcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccc
Q 012612 291 DRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRT 370 (460)
Q Consensus 291 ~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~ 370 (460)
+. +-.+.+.+ .||+.+
T Consensus 157 ----------------------------~~--------------~~r~~ps~---------------fPfteP------- 172 (247)
T PF01409_consen 157 ----------------------------DV--------------KVRFRPSY---------------FPFTEP------- 172 (247)
T ss_dssp ----------------------------TE--------------EEEEEECE---------------ETTEEE-------
T ss_pred ----------------------------cc--------------ceEeecCC---------------CCcccC-------
Confidence 00 00012212 266643
Q ss_pred eeeeeccc----C-CceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCc
Q 012612 371 VAAMDMLV----P-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENI 445 (460)
Q Consensus 371 ~~~fDl~~----~-G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~I 445 (460)
+...|+++ + |+-||+++++-. -+.+++.|+| +. -|..+||+|+|||+|+..|+++|
T Consensus 173 s~e~~i~~~~~~~~~wiEvgg~G~vh------P~Vl~~~gid-~~------------~~~~A~G~GleRlam~~~gi~di 233 (247)
T PF01409_consen 173 SREADIYCGVCKGGGWIEVGGCGMVH------PEVLENWGID-EE------------YPGFAFGLGLERLAMLKYGIPDI 233 (247)
T ss_dssp EEEEEEEEECTTTTCEEEEEEEEEE-------HHHHHHTT---TT------------SEEEEEEEEHHHHHHHHHT-SSG
T ss_pred CeEEEEEEeeccCCCceEEeeccccc------HhhhhccCcC-cc------------ceEEEecCCHHHHHHHHcCCchH
Confidence 34567766 1 333999888755 4455777886 32 24568999999999999999999
Q ss_pred ccc
Q 012612 446 RDA 448 (460)
Q Consensus 446 rdv 448 (460)
|+.
T Consensus 234 R~~ 236 (247)
T PF01409_consen 234 RLL 236 (247)
T ss_dssp GHH
T ss_pred HHH
Confidence 974
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B .... |
| >COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.3e-14 Score=138.69 Aligned_cols=191 Identities=20% Similarity=0.268 Sum_probs=120.7
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeecc--------ccCCcc---ccccc--cHHHHHHHHhcC---
Q 012612 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTL--------DFFEKP---AFLTV--SGQLNAETYATA--- 215 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~--------~~~~~~---~~L~~--Spql~l~l~~~g--- 215 (460)
.+++..|+++|.+.||.|++.|.+.+.-- .--..|....| -|++.. .-||+ || .--+.|...
T Consensus 114 ~~~~e~i~~iF~~mGF~~~~gp~IE~d~~-NFDaLn~P~dHPARdmqDTFy~~~~~~~~lLRTHTs~-vq~R~l~~~~~~ 191 (335)
T COG0016 114 TQTIEEIEDIFLGMGFTEVEGPEIETDFY-NFDALNIPQDHPARDMQDTFYLKDDREKLLLRTHTSP-VQARTLAENAKI 191 (335)
T ss_pred HHHHHHHHHHHHHcCceeccCCccccccc-chhhhcCCCCCCcccccceEEEcCCCCceeecccCcH-hhHHHHHhCCCC
Confidence 45888999999999999999996654211 00001111111 122221 34542 33 222444433
Q ss_pred CCceEEEecccccCCCCCCCCCCccceeeeeec--CCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhh
Q 012612 216 LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELA--FADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRL 293 (460)
Q Consensus 216 ~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~--~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l 293 (460)
=-|+|.+++|||+|.. +.+|+|||+|+|--.. ..++.+++.+++++++.++..-
T Consensus 192 P~k~~~~grvyR~D~~-DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~~fg~~----------------------- 247 (335)
T COG0016 192 PIKIFSPGRVYRNDTV-DATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKKFFGED----------------------- 247 (335)
T ss_pred CceEecccceecCCCC-CcccchheeeeEEEEEeCCccHHHHHHHHHHHHHHhcCCC-----------------------
Confidence 3589999999999988 6899999999994332 2345666665555555443110
Q ss_pred hhhhcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccceee
Q 012612 294 STVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAA 373 (460)
Q Consensus 294 ~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~ 373 (460)
.+-.+.+.++ ||+.+ +..
T Consensus 248 ----------------------------------------~~vRfrpsyF---------------PFTEP-------S~E 265 (335)
T COG0016 248 ----------------------------------------VKVRFRPSYF---------------PFTEP-------SAE 265 (335)
T ss_pred ----------------------------------------cceEeecCCC---------------CCCCC-------eEE
Confidence 0011222232 78754 445
Q ss_pred eecccCC---ceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCcccc
Q 012612 374 MDMLVPR---IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDA 448 (460)
Q Consensus 374 fDl~~~G---~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv 448 (460)
.|++++| +=||+|+++-. -+.++..|++++++.. -.||||+|||.|+.+|+++||+.
T Consensus 266 vdv~~~~~~~WlEi~G~Gmv~------P~VL~~~G~~~~~~~G------------fAfGlGlERlAMLkygI~DIR~l 325 (335)
T COG0016 266 VDVYCPGCGGWLEILGCGMVH------PNVLEAVGIDPEEYSG------------FAFGLGLERLAMLKYGIPDIRDL 325 (335)
T ss_pred EEEEEcCCCCEEEEecccccC------HHHHHhcCCCCCcceE------------EEEeecHHHHHHHHhCCcHHHHH
Confidence 7777763 45999999866 4566888987775421 16899999999999999999974
|
|
| >PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-13 Score=136.45 Aligned_cols=108 Identities=17% Similarity=0.194 Sum_probs=73.8
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecCC-C-C--------CCC---CceeeeccccCCcccccc--ccHHHHHHHHhcC-
Q 012612 152 NALAYATHKFFQENGFIWISSPIITASD-C-E--------GAG---EQFCVTTLDFFEKPAFLT--VSGQLNAETYATA- 215 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~-~-e--------g~~---~~F~v~~~~~~~~~~~L~--~Spql~l~l~~~g- 215 (460)
+.+...||++|...||.|+++|.|.+.. + + .++ +.|.+ +...-|| +||-+. +.|...
T Consensus 111 ~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI------~~~~lLRThTSp~qi-r~L~~~~ 183 (339)
T PRK00488 111 TQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYI------DDGLLLRTHTSPVQI-RTMEKQK 183 (339)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEE------cCCceeeccCcHHHH-HHHHhcC
Confidence 5688899999999999999999987521 0 1 111 23333 3334555 455442 333322
Q ss_pred C-CceEEEecccccCCCCCCCCCCccceeeeeecC--CCHHHHHHHHHHHHHHHH
Q 012612 216 L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQYVV 267 (460)
Q Consensus 216 ~-~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~--~~~~~~~~~~e~li~~l~ 267 (460)
. -|+|++|+|||++.. +.+|.|+|+|+|.-... .++.++...++.++++++
T Consensus 184 ~Pirif~~G~VyR~D~~-DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~f 237 (339)
T PRK00488 184 PPIRIIAPGRVYRNDSD-DATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFF 237 (339)
T ss_pred CCeEEEEeeeEEEcCCC-CcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHc
Confidence 2 389999999999987 68999999999976554 357777777766666654
|
|
| >TIGR02367 PylS pyrrolysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-13 Score=139.58 Aligned_cols=96 Identities=24% Similarity=0.376 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHhhhhCCceeecCceeecCC------CCC----CCCceeeeccccCCcccccc--ccHHHHHHHHh--
Q 012612 148 ARVRNALAYATHKFFQENGFIWISSPIITASD------CEG----AGEQFCVTTLDFFEKPAFLT--VSGQLNAETYA-- 213 (460)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg----~~~~F~v~~~~~~~~~~~L~--~Spql~l~l~~-- 213 (460)
..-.+.+.+.+|++|...||.||.||+|+... .+. ..+.|. ++...+|+ ..|+++..+..
T Consensus 239 ~~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk------~ee~lvLRPdLTPsLaR~La~N~ 312 (453)
T TIGR02367 239 EDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFR------VDKNFCLRPMLAPNLYNYLRKLD 312 (453)
T ss_pred ccHHHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceE------ecCceEecccCHHHHHHHHHHhh
Confidence 34468899999999999999999999997311 011 112332 23457888 77888753321
Q ss_pred ---cCCCceEEEecccccCCCCCCCCCCccceeeeeecCC
Q 012612 214 ---TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 250 (460)
Q Consensus 214 ---~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~ 250 (460)
..-.|+|+||+|||+|.. +.+|+.||+|++++.+..
T Consensus 313 ~~l~~PqKIFEIGkVFR~E~~-~~thlREF~QL~~eIaG~ 351 (453)
T TIGR02367 313 RALPDPIKIFEIGPCYRKESD-GKEHLEEFTMLNFCQMGS 351 (453)
T ss_pred hhccCCeeEEEEcCeEecCCC-CCCCcCeEEEEEEEEECC
Confidence 223599999999999987 678999999999998754
|
PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase. |
| >cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-13 Score=128.34 Aligned_cols=99 Identities=23% Similarity=0.333 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhhhhCCceeecCceeecCCC-CCCC---CceeeeccccCCccccccccHHHHH-HHHhc----CCCceEE
Q 012612 151 RNALAYATHKFFQENGFIWISSPIITASDC-EGAG---EQFCVTTLDFFEKPAFLTVSGQLNA-ETYAT----ALSNVYT 221 (460)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~---~~F~v~~~~~~~~~~~L~~Spql~l-~l~~~----g~~rvfe 221 (460)
|+.+.+.+|++|.+.||.||.||.++.... +... +...+ ..+..+...+|++|....+ +.+.. .--|+||
T Consensus 2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfe 80 (211)
T cd00768 2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLP-VGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAE 80 (211)
T ss_pred HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheee-eecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEE
Confidence 678999999999999999999999987522 2111 11111 1134466789999999987 55543 3468999
Q ss_pred EecccccCCCCCC--CCCCccceeeeeecCCC
Q 012612 222 FGPTFRAENSNTS--RHLAEFWMIEPELAFAD 251 (460)
Q Consensus 222 I~~~FR~E~~~~~--rHl~EFt~lE~e~~~~~ 251 (460)
||+|||+|.. +. +|+.||+|+++++...+
T Consensus 81 ig~vfr~e~~-~~~~~~~~ef~~l~~~~~g~~ 111 (211)
T cd00768 81 IGPAFRNEGG-RRGLRRVREFTQLEGEVFGED 111 (211)
T ss_pred EcceeecCCC-ccccccceeEEEcCEEEEcCC
Confidence 9999999875 33 68899999999998654
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. |
| >PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=134.87 Aligned_cols=46 Identities=24% Similarity=0.375 Sum_probs=34.4
Q ss_pred CceEEEecccccCCCCCCCCCCccceeeeeecC--CCHHHHHHHHHHHH
Q 012612 217 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYL 263 (460)
Q Consensus 217 ~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~--~~~~~~~~~~e~li 263 (460)
-|+|.|++|||+|.. +.+|+|||+|+|.-... .++.+++.++++++
T Consensus 343 ~k~fsigrVfR~d~i-DatH~~eFhQ~EG~vvd~~~t~~~L~g~l~~f~ 390 (492)
T PLN02853 343 KRYFSIDRVFRNEAV-DRTHLAEFHQVEGLVCDRGLTLGDLIGVLEDFF 390 (492)
T ss_pred cEEEeccceecCCCC-CcccCccceeEEEEEEeCCCCHHHHHHHHHHHH
Confidence 389999999999998 68999999999965542 24555554444443
|
|
| >PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3e-12 Score=132.84 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=29.4
Q ss_pred CceEEEecccccCCCCCCCCCCccceeeeeecCC
Q 012612 217 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 250 (460)
Q Consensus 217 ~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~ 250 (460)
-|+|.|++|||+|.. +.+|+|||+|+|......
T Consensus 358 ~k~fsigrVfR~d~~-DatH~~eFhQ~Eg~vi~~ 390 (494)
T PTZ00326 358 KKYFSIDRVFRNETL-DATHLAEFHQVEGFVIDR 390 (494)
T ss_pred ceEEecCCEecCCCC-CCCcCceeEEEEEEEEeC
Confidence 489999999999998 689999999999887643
|
|
| >PLN02788 phenylalanine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.9e-11 Score=121.90 Aligned_cols=96 Identities=18% Similarity=0.255 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhhhC---Cceeec--CceeecCCCCCCCCceeeecc-------ccCCccccccccHHHHH-HHHhcCCCc
Q 012612 152 NALAYATHKFFQEN---GFIWIS--SPIITASDCEGAGEQFCVTTL-------DFFEKPAFLTVSGQLNA-ETYATALSN 218 (460)
Q Consensus 152 s~i~~~iR~ff~~~---gF~EV~--TPiL~~~~~eg~~~~F~v~~~-------~~~~~~~~L~~Spql~l-~l~~~g~~r 218 (460)
+.+++.|+++|.+. ||.+++ .|+.+...+-.+.. |+..|. -|.+...-||+----+. ++|..+-.|
T Consensus 71 ~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~-~P~dHPaR~~~DTfy~~~~~lLRTHTSa~q~~~l~~~~~~ 149 (402)
T PLN02788 71 GILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVL-VPPDHVSRSYNDTYYVDAQTVLRCHTSAHQAELLRAGHTH 149 (402)
T ss_pred HHHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhC-CCCCCCccCccceEEecCCccccCCCcHHHHHHHHhCCCc
Confidence 34677788888886 999998 56555422211100 111111 23455666765433333 556567779
Q ss_pred eEEEecccccCCCCCCCCCCccceeeeeecC
Q 012612 219 VYTFGPTFRAENSNTSRHLAEFWMIEPELAF 249 (460)
Q Consensus 219 vfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~ 249 (460)
++.+|+|||++.. +.+|.|+|+|+|.-+.+
T Consensus 150 ~~~~g~VyRrD~i-D~tH~p~FhQ~EG~~v~ 179 (402)
T PLN02788 150 FLVTGDVYRRDSI-DATHYPVFHQMEGVRVF 179 (402)
T ss_pred EEEEeeEeecCCC-CcccCccceeEEEEEEe
Confidence 9999999999998 68999999999987764
|
|
| >COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.7e-10 Score=103.58 Aligned_cols=276 Identities=17% Similarity=0.141 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHHHHhhhh-----CCceeecCceeecCCCC------CCCCceeeeccccCCccccccccHHHHHH--HH
Q 012612 146 AVARVRNALAYATHKFFQE-----NGFIWISSPIITASDCE------GAGEQFCVTTLDFFEKPAFLTVSGQLNAE--TY 212 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~-----~gF~EV~TPiL~~~~~e------g~~~~F~v~~~~~~~~~~~L~~Spql~l~--l~ 212 (460)
..+..+.+-++.+.++|.+ .|.+||..|+|+....+ |...+..|.....-+...-...|-.-||+ |.
T Consensus 3 k~fI~qQ~~IsfvKn~Ft~~l~~~L~lieVq~Pils~vg~G~qDnLsg~ekaVsv~vk~~p~a~fEvVhSLAKWKR~tL~ 82 (330)
T COG2502 3 KAFILQQQAISFVKNTFTQHLEERLGLIEVQAPILSRVGDGLQDNLSGTEKAVSVKVKKLPDATFEVVHSLAKWKRHTLA 82 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCeEEeecceEeccCCcccccccccccceEEEEeecCCchhhhhHHHHHHHHHHHH
Confidence 4556667777777777754 69999999999974332 22233333222223334556678888886 34
Q ss_pred hcCC---CceEEEeccccc-CCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccch
Q 012612 213 ATAL---SNVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKG 288 (460)
Q Consensus 213 ~~g~---~rvfeI~~~FR~-E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~ 288 (460)
--|| +..|.=.++-|. |++-+..|.---.|.|||....+-+.-++.+.+.++.+...+..... .+ ...+
T Consensus 83 r~~f~~~eGlythM~AlRpDeD~ld~~HSvYVDQWDWEkvi~~g~rNl~yLK~tV~kIY~~ir~te~-av--~~~~---- 155 (330)
T COG2502 83 RYGFSAGEGLYTHMKALRPDEDRLDPIHSVYVDQWDWEKVIPDGDRNLAYLKSTVEKIYAAIRETEL-AV--SAEF---- 155 (330)
T ss_pred hcCCcCCCceeeechhcCCCcccccchheEEecccchhhhcCCccccHHHHHHHHHHHHHHHHHHHH-HH--HHhc----
Confidence 4455 569999999995 77667889888899999988777776677777777777766543210 00 0000
Q ss_pred hHhhhhhhhcCCCcccCHHHHHHHHHHHccccccccccccccc-hhhhcccccccccCccEEEEeCCCcCc---cccccc
Q 012612 289 IIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQ-SEHERYLTEEAFGGCPVIVSDYPKEIK---AFYMRQ 364 (460)
Q Consensus 289 ~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~-~~~e~~l~~~~~~~~p~~I~~fP~~~~---pf~~~~ 364 (460)
.+..++. ..|+|-.+-++.+. ++ +|+ +..|+.+...+ ..+|++.---.++ |-.-+.
T Consensus 156 ---~~~~~LP---~~ItFihseeL~~r----yP-------~L~~k~RE~ai~Ke~---gAvFligIGg~LsdG~~hd~Ra 215 (330)
T COG2502 156 ---GLAPFLP---DQITFIHSQELVAR----YP-------DLDPKGRERAIAKEL---GAVFLIGIGGKLSDGKPHDVRA 215 (330)
T ss_pred ---CCcccCc---cceEEeehHHHHHh----CC-------CCCcchhhHHHHHhh---CcEEEEecccccCCCCcCCCCC
Confidence 0111111 23444333223222 11 122 22344444333 3455554322211 111111
Q ss_pred cCCccce---------eeeecccC------CceeeecHHHhhhhHHHHHHHHHHcCCC-cccHHHHHHHHhcCCCCCcce
Q 012612 365 NDDGRTV---------AAMDMLVP------RIGELIGGSQREERLEYLEGRLDELKLN-RDSYWWYLDLRHYGSVPHAGF 428 (460)
Q Consensus 365 ~~~~~~~---------~~fDl~~~------G~~Ei~~g~~r~~~~~~~~~~~~~~~~~-~~~~~~yl~~~~~G~pp~~G~ 428 (460)
++-+.++ .+=|+++. ++ |+.+-+.|. |.+.++++++..|.. ...++|.-..+.--+|.+-|.
T Consensus 216 PdYDdWtt~se~~~~gLNGDilvwn~~l~~af-ElSSMGIRV-de~~l~~Ql~ltgdeDrl~~~wHq~llng~lP~TIGG 293 (330)
T COG2502 216 PDYDDWTTPSELGYKGLNGDILVWNPVLGDAF-ELSSMGIRV-DEDALKRQLALTGDEDRLELEWHQMLLNGELPQTIGG 293 (330)
T ss_pred CCccccCCcccccccccCCcEEEechhccchh-eeecceeEe-cHHHHHHHHhccCchhhhcCHHHHHHHcCCCCccccC
Confidence 1111111 23344332 56 999999998 667777777766643 234577777777779999999
Q ss_pred eccHHHHHHHHcCCCCcccccc
Q 012612 429 GLGFERLVQFATGVENIRDAIP 450 (460)
Q Consensus 429 giGidRL~m~l~~~~~Irdv~~ 450 (460)
|||-.||+|+|++.++|-+|.+
T Consensus 294 GIGQSRl~M~lL~k~HIGeVQ~ 315 (330)
T COG2502 294 GIGQSRLCMLLLQKKHIGEVQA 315 (330)
T ss_pred cccHHHHHHHHhcccccceeee
Confidence 9999999999999999999964
|
|
| >TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.7e-11 Score=115.99 Aligned_cols=105 Identities=15% Similarity=0.229 Sum_probs=69.5
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecCC-C-CCC---C--------CceeeeccccCCccccccccHHHH-HHHHhcCC-
Q 012612 152 NALAYATHKFFQENGFIWISSPIITASD-C-EGA---G--------EQFCVTTLDFFEKPAFLTVSGQLN-AETYATAL- 216 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~-~-eg~---~--------~~F~v~~~~~~~~~~~L~~Spql~-l~l~~~g~- 216 (460)
.++...+|+.|...||.|+.||.+.+.. . +.. . +.|.+ .....||+|---- ++.+....
T Consensus 75 ~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l------~d~~vLRtsl~p~ll~~l~~N~~ 148 (294)
T TIGR00468 75 TRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYI------KDRLLLRTHTTAVQLRTMEENEK 148 (294)
T ss_pred HHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceee------cCCcceecccHHHHHHHHHhcCC
Confidence 4577788999999999999999998751 1 111 0 12222 2345676655443 35555544
Q ss_pred --CceEEEecccccCCCCCCCCCCccceeeeeecCC--CHHHHHHHHHHHH
Q 012612 217 --SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYL 263 (460)
Q Consensus 217 --~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~--~~~~~~~~~e~li 263 (460)
-|+||||+|||++.. +.+|+|||+|++.-+... ++.++...+|.++
T Consensus 149 ~pirlFEiGrVfr~d~~-d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll 198 (294)
T TIGR00468 149 PPIRIFSPGRVFRNDTV-DATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFL 198 (294)
T ss_pred CCceEEEecceEEcCCC-CCccCChhhEEEEEEECCCCCHHHHHHHHHHHH
Confidence 489999999999876 568999999999775432 4555544444444
|
Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment. |
| >TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.6e-10 Score=115.07 Aligned_cols=64 Identities=20% Similarity=0.288 Sum_probs=48.0
Q ss_pred ccccccccCCccceeeeecccCC-ceeeecHHHhhhhHHHHHHHHHHcCCCcccH-HHHHHHHhcCCCCCcceeccHHHH
Q 012612 358 KAFYMRQNDDGRTVAAMDMLVPR-IGELIGGSQREERLEYLEGRLDELKLNRDSY-WWYLDLRHYGSVPHAGFGLGFERL 435 (460)
Q Consensus 358 ~pf~~~~~~~~~~~~~fDl~~~G-~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~-~~yl~~~~~G~pp~~G~giGidRL 435 (460)
.||+.+ +...|+.++| +=||+|+++-. .+.+++.|++++.+ +| -||||+|||
T Consensus 272 fPfteP-------s~evdi~~~g~WiEi~gcG~v~------p~vl~~~g~~~~~~~g~-------------AfGiGleRl 325 (460)
T TIGR00469 272 FPFTAP-------SWEIEIWFKDEWLELCGCGIIR------HDILLRAGVHPSETIGW-------------AFGLGLDRI 325 (460)
T ss_pred CCCCCc-------ceEEEEEECCeeEEEeeeccCc------HHHHHHcCCCccceEEE-------------EEEecHHHH
Confidence 477653 4557888888 22999999866 45667778876532 11 489999999
Q ss_pred HHHHcCCCCccc
Q 012612 436 VQFATGVENIRD 447 (460)
Q Consensus 436 ~m~l~~~~~Ird 447 (460)
+|++.|+++||.
T Consensus 326 aMl~~gi~DiR~ 337 (460)
T TIGR00469 326 AMLLFDIPDIRL 337 (460)
T ss_pred HHHHcCccHHHH
Confidence 999999999985
|
Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species. |
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.6e-09 Score=111.32 Aligned_cols=105 Identities=15% Similarity=0.223 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecC-------------CCCCCCCceeeeccc------------------
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITAS-------------DCEGAGEQFCVTTLD------------------ 193 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~-------------~~eg~~~~F~v~~~~------------------ 193 (460)
..-...+..+++.+|+.|...||.|++||.+.++ +.-...+.|.+....
T Consensus 229 ~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~he~ 308 (489)
T PRK04172 229 PGKKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEVHEH 308 (489)
T ss_pred CCCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHHHhc
Confidence 3445678889999999999999999999999743 001122333332100
Q ss_pred --c-------------CCccccccccHHHHH-HHHh-cCC--CceEEEecccccCCCCCCCCCCccceeeeeecCC
Q 012612 194 --F-------------FEKPAFLTVSGQLNA-ETYA-TAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 250 (460)
Q Consensus 194 --~-------------~~~~~~L~~Spql~l-~l~~-~g~--~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~ 250 (460)
+ .++...||..-=-.. ++++ .+. -|+|+||+|||+|.. +..|++||+|+++.+...
T Consensus 309 g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~~~p~rlFeiGrVFR~e~~-d~~~l~Ef~ql~~~i~G~ 383 (489)
T PRK04172 309 GGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTI-DATHLPEFYQLEGIVMGE 383 (489)
T ss_pred cCCCCCccccCCcchhhhhccccccCChHHHHHHHHhcCCCCeEEEEecceEcCCCC-CcccCCchheEEEEEEeC
Confidence 0 012345554332222 3333 232 389999999999987 467889999999998764
|
|
| >cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.3e-08 Score=97.59 Aligned_cols=100 Identities=21% Similarity=0.321 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhhhhCCceeecCceeecCCC-------CCCCCceeeeccccCCcccccccc--HHHHHHHHhc----
Q 012612 148 ARVRNALAYATHKFFQENGFIWISSPIITASDC-------EGAGEQFCVTTLDFFEKPAFLTVS--GQLNAETYAT---- 214 (460)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-------eg~~~~F~v~~~~~~~~~~~L~~S--pql~l~l~~~---- 214 (460)
.+.|..+.+.+++.|.+.||.||.||+|..... ....+.|.+. +--++.+.|+.- |++. ++.+.
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~--d~~g~~l~LRpd~T~~ia-R~~a~~~~~ 78 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFK--DKGGRDLALRPDLTAPVA-RAVAENLLS 78 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEE--CCCCCEEEeCCCCcHHHH-HHHHhcCcc
Confidence 367889999999999999999999999987432 1223456553 333666777743 3333 32221
Q ss_pred --CCCceEEEecccccCCCCCCCCCCccceeeeeecCCC
Q 012612 215 --ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 215 --g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~ 251 (460)
.--|+|++++|||+|.. ...|.-||+|+++|+-..+
T Consensus 79 ~~~p~k~~y~g~vfR~e~~-~~g~~re~~Q~g~Eiig~~ 116 (261)
T cd00773 79 LPLPLKLYYIGPVFRYERP-QKGRYREFYQVGVEIIGSD 116 (261)
T ss_pred CCCCeEEEEEcCEEecCCC-CCCCccceEEeceeeeCCC
Confidence 23489999999999987 4567899999999986553
|
HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain. |
| >PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands | Back alignment and domain information |
|---|
Probab=98.95 E-value=9e-09 Score=80.19 Aligned_cols=74 Identities=24% Similarity=0.448 Sum_probs=60.7
Q ss_pred EEEEEEEeee-ccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEE
Q 012612 32 IVVAGWVRTL-RAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (460)
Q Consensus 32 V~v~GwV~~~-R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ 110 (460)
|+|.|||.++ |..++++|+.|+|++| .+|+++..+. .....+. |++|++|.|+|++...+.+ +++|.+++++
T Consensus 1 V~v~G~V~~~~~~~~~~~~~~l~D~tg--~i~~~~~~~~-~~~~~~~--l~~g~~v~v~G~v~~~~~~--~~~l~~~~i~ 73 (75)
T PF01336_consen 1 VTVEGRVTSIRRSGGKIVFFTLEDGTG--SIQVVFFNEE-YERFREK--LKEGDIVRVRGKVKRYNGG--ELELIVPKIE 73 (75)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEETHH-HHHHHHT--S-TTSEEEEEEEEEEETTS--SEEEEEEEEE
T ss_pred CEEEEEEEEEEcCCCCEEEEEEEECCc--cEEEEEccHH-hhHHhhc--CCCCeEEEEEEEEEEECCc--cEEEEECEEE
Confidence 7899999999 6679999999999995 5999998721 1223455 9999999999999998654 6999999998
Q ss_pred EE
Q 012612 111 LV 112 (460)
Q Consensus 111 il 112 (460)
+|
T Consensus 74 ~l 75 (75)
T PF01336_consen 74 IL 75 (75)
T ss_dssp EE
T ss_pred EC
Confidence 76
|
The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A .... |
| >TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.2e-08 Score=102.07 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=40.6
Q ss_pred CceEEEecccccCCCCCCCCCCccceeeeeecCC--CHHHHHHHHHHHHHHH
Q 012612 217 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 266 (460)
Q Consensus 217 ~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~--~~~~~~~~~e~li~~l 266 (460)
-|+|++|+|||+|...+.+|+++|+|+|.-.+.. ++.+++..++.|++++
T Consensus 208 iRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~L 259 (533)
T TIGR00470 208 LKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQF 259 (533)
T ss_pred eEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 5899999999999643569999999999777654 5788887777777665
|
This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys. |
| >cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain | Back alignment and domain information |
|---|
Probab=98.61 E-value=2e-07 Score=88.50 Aligned_cols=109 Identities=17% Similarity=0.266 Sum_probs=77.7
Q ss_pred HHHHHHHHhhhhCCceeecCceeecCCC--CCCC-----------CceeeeccccCCccccccccHHHH-HHHHhc--CC
Q 012612 153 ALAYATHKFFQENGFIWISSPIITASDC--EGAG-----------EQFCVTTLDFFEKPAFLTVSGQLN-AETYAT--AL 216 (460)
Q Consensus 153 ~i~~~iR~ff~~~gF~EV~TPiL~~~~~--eg~~-----------~~F~v~~~~~~~~~~~L~~Spql~-l~l~~~--g~ 216 (460)
++.+.+|++|...||.||.|+.+++... +... +++.+. |-. -.+||+|-=-. ++.++. .-
T Consensus 5 ~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~--NP~--~~~LR~sLlp~LL~~l~~N~~~ 80 (218)
T cd00496 5 KVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYIN--DPA--RLLLRTHTSAVQARALAKLKPP 80 (218)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEEC--CCc--eEEEeccCcHHHHHHHHhcCCC
Confidence 4667789999999999999999987621 1110 111221 111 25677654333 255544 55
Q ss_pred CceEEEecccccCCCCCCCCCCccceeeeeecCC--CHHHHHHHHHHHHHHH
Q 012612 217 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 266 (460)
Q Consensus 217 ~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~--~~~~~~~~~e~li~~l 266 (460)
-|+||||+|||++.. +.+|+|||+|+++.++.. |+.+++..+|.++..+
T Consensus 81 ~~lFEiG~Vf~~~~~-~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~l 131 (218)
T cd00496 81 IRIFSIGRVYRNDEI-DATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKEL 131 (218)
T ss_pred eeEEEEcCeEECCCC-CCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 689999999999875 457889999999999987 8999999999988643
|
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. |
| >TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit | Back alignment and domain information |
|---|
Probab=98.48 E-value=4e-06 Score=84.15 Aligned_cols=117 Identities=17% Similarity=0.126 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC------CCCCCceeeeccccCCccccccc--cHHHHHHHHhc--C
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGAGEQFCVTTLDFFEKPAFLTV--SGQLNAETYAT--A 215 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~------eg~~~~F~v~~~~~~~~~~~L~~--Spql~l~l~~~--g 215 (460)
.-.+++..+...+++.|.+.||.||+||++..... +...+.|.+. +--|..+.|+. .+++-.-+... +
T Consensus 6 ~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~~--d~~g~~l~LRpD~T~~iaR~~~~~~~~ 83 (314)
T TIGR00443 6 EEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGGILNEDLFKLF--DSLGRVLGLRPDMTTPIARAVSTRLRD 83 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCCcchhceEEEE--CCCCCEEeecCcCcHHHHHHHHHhccc
Confidence 45677899999999999999999999999887322 1222355443 22366666663 44433222221 2
Q ss_pred ---CCceEEEecccccCCCCCCCCCCccceeeeeecCCC-H---HHHHHHHHHHHHH
Q 012612 216 ---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L---KDDMACATAYLQY 265 (460)
Q Consensus 216 ---~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~-~---~~~~~~~e~li~~ 265 (460)
--|+|++|+|||.|... .-+.-||+|+.+|.-..+ . -|++.++-+.+..
T Consensus 84 ~~~p~r~~y~g~VfR~~~~~-~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~~~l~~ 139 (314)
T TIGR00443 84 RPLPLRLCYAGNVFRTNESG-AGRSREFTQAGVELIGAGGPAADAEVIALLIEALKA 139 (314)
T ss_pred CCCCeEEEEeceEeecCCCc-CCCcccccccceEEeCCCCchhHHHHHHHHHHHHHH
Confidence 34899999999999873 456789999999985443 2 2445544444443
|
Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit. |
| >PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes | Back alignment and domain information |
|---|
Probab=98.44 E-value=4e-07 Score=83.19 Aligned_cols=116 Identities=25% Similarity=0.318 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhhh-hCCceeecCceeecCCC-C--C-----CCCceeeeccccCCccccccccHHHHH-HHHh----c-
Q 012612 150 VRNALAYATHKFFQ-ENGFIWISSPIITASDC-E--G-----AGEQFCVTTLDFFEKPAFLTVSGQLNA-ETYA----T- 214 (460)
Q Consensus 150 ~Rs~i~~~iR~ff~-~~gF~EV~TPiL~~~~~-e--g-----~~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~----~- 214 (460)
++.+|++.+++.+. +.||.||.||+|.+... . | ..+.|.+. +--+..++|+.+.+... .++. .
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~--~~~~~~~~L~pt~~~~~~~~~~~~~~~~ 78 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVK--DRGDEEYCLRPTSEPGIYSLFKNEIRSS 78 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEE--ETTTEEEEE-SSSHHHHHHHHHHHEEBH
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeee--ecccccEEeccccccceeeeecceeeec
Confidence 47889999999999 99999999999998433 1 1 12345443 22235688887766543 2221 1
Q ss_pred --CC-CceEEEecccccCCC--CCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHH
Q 012612 215 --AL-SNVYTFGPTFRAENS--NTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVR 268 (460)
Q Consensus 215 --g~-~rvfeI~~~FR~E~~--~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~ 268 (460)
.+ =|+|++|+|||+|.. .+-..+-||+|.|++....+ ++..+..++++.....
T Consensus 79 ~~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~-~~~~~~~~~~~~~~~~ 136 (173)
T PF00587_consen 79 YRDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP-EQSEEEFEELLELYKE 136 (173)
T ss_dssp GGGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS-HHHHHHHHHHHHHHHH
T ss_pred cccCCeEEeecccccccccccccccceeeEeeeeceEEEeCC-cccHHHHHHHHHHHHH
Confidence 12 279999999999932 23456779999999997777 7777777776665443
|
seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B .... |
| >COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.4e-05 Score=82.64 Aligned_cols=116 Identities=23% Similarity=0.315 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCC------CCCC----CCceeeeccccCCcccccc---ccHHHHHHHH
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGA----GEQFCVTTLDFFEKPAFLT---VSGQLNAETY 212 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg~----~~~F~v~~~~~~~~~~~L~---~Spql~l~l~ 212 (460)
.-...+..|...+|+-+.+.||.||.||++-... +|.. .+.|... +--++.+.|+ ++|=. +++
T Consensus 16 ~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~--Dkggr~laLRpe~Tapv~--R~~ 91 (429)
T COG0124 16 EDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFK--DKGGRSLALRPELTAPVA--RAV 91 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEE--eCCCCEEEecccCcHHHH--HHH
Confidence 3577889999999999999999999999886532 2221 1222221 2235556665 23321 332
Q ss_pred hc------CCCceEEEecccccCCCCCCCCCCccceeeeeecCCC----HHHHHHHHHHHHHHH
Q 012612 213 AT------ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDMACATAYLQYV 266 (460)
Q Consensus 213 ~~------g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~----~~~~~~~~e~li~~l 266 (460)
+. ---|.|.++||||.|.....|- =||+|+++|....+ --|++.++-+++..+
T Consensus 92 ~en~~~~~~p~k~yy~g~vfRyErPQ~GR~-RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~l 154 (429)
T COG0124 92 AENKLDLPKPLKLYYFGPVFRYERPQKGRY-RQFYQFGVEVIGSDSPDADAEVIALAVEILEAL 154 (429)
T ss_pred HhccccccCCeeEEEecceecCCCCCCCCc-eeeEEcCeEEeCCCCcccCHHHHHHHHHHHHHc
Confidence 22 2248999999999999988887 69999999997653 236677666666554
|
|
| >TIGR00442 hisS histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.2e-05 Score=83.19 Aligned_cols=104 Identities=18% Similarity=0.232 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC------CC----CCCceeeeccccCCccccccc--cHHHHHHHH
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EG----AGEQFCVTTLDFFEKPAFLTV--SGQLNAETY 212 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~------eg----~~~~F~v~~~~~~~~~~~L~~--Spql~l~l~ 212 (460)
-.-.+.+..+...+++.|.+.||.||.||++..... +. ..+.|.+. +.-|+.+.|+. .+++...+.
T Consensus 11 p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~--d~~g~~l~LRpD~T~~iaR~~~ 88 (397)
T TIGR00442 11 PEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFK--DKGGRSLTLRPEGTAPVARAVI 88 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEE--CCCCCEEeecCCCcHHHHHHHH
Confidence 345788899999999999999999999999966321 11 12345443 33466667763 334432222
Q ss_pred hc----C-CCceEEEecccccCCCCCCCCCCccceeeeeecCCC
Q 012612 213 AT----A-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 213 ~~----g-~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~ 251 (460)
.. . --|+|++++|||+|.... .|.-||+|+++|....+
T Consensus 89 ~~~~~~~~p~r~~y~g~vfR~e~~~~-gr~ref~Q~g~eiig~~ 131 (397)
T TIGR00442 89 ENKLLLPKPFKLYYIGPMFRYERPQK-GRYRQFHQFGVEVIGSD 131 (397)
T ss_pred hcccccCCCeEEEEEcCeecCCCCCC-CcccceEEcCeeeeCCC
Confidence 21 1 248999999999998754 45689999999986554
|
This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff. |
| >cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=98.14 E-value=8.2e-06 Score=78.03 Aligned_cols=103 Identities=19% Similarity=0.197 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhhhhCCceeecCceeecCCC---CCCC-----Cceeeeccc--cCCccccccccHHHHH-HHHhc---
Q 012612 149 RVRNALAYATHKFFQENGFIWISSPIITASDC---EGAG-----EQFCVTTLD--FFEKPAFLTVSGQLNA-ETYAT--- 214 (460)
Q Consensus 149 ~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg~~-----~~F~v~~~~--~~~~~~~L~~Spql~l-~l~~~--- 214 (460)
+++..|.+.+++.|.+.||.||.||.|..... .+.. +.|.+.... --+..++|+....... ++.+.
T Consensus 3 ~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~~ 82 (235)
T cd00670 3 ALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEIL 82 (235)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccCc
Confidence 56788999999999999999999999987432 1111 234332110 0035567775443332 22221
Q ss_pred ---CC-CceEEEecccccCCCCC--CCCCCccceeeeeecCCC
Q 012612 215 ---AL-SNVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 215 ---g~-~rvfeI~~~FR~E~~~~--~rHl~EFt~lE~e~~~~~ 251 (460)
.+ -|+|++++|||+|.... -.-.-||+|.|++.-..+
T Consensus 83 ~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~ 125 (235)
T cd00670 83 SYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEP 125 (235)
T ss_pred cchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCH
Confidence 12 37999999999997631 122469999999985444
|
This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.3e-06 Score=81.67 Aligned_cols=120 Identities=18% Similarity=0.114 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHhhhhCCceeecCceeecCCC----CC-----CCCceeeeccc--cCCccccccccHHHHH-----H
Q 012612 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC----EG-----AGEQFCVTTLD--FFEKPAFLTVSGQLNA-----E 210 (460)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~----eg-----~~~~F~v~~~~--~~~~~~~L~~Spql~l-----~ 210 (460)
-.+++..|.+.+++.+.+.||.||.||.|.+... .| ..+.|.+.... -.+.+++|+...+-.. .
T Consensus 31 g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~~ 110 (261)
T cd00778 31 GYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPMFSK 110 (261)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcEEEcCCCCHHHHHHHHh
Confidence 5788899999999999999999999999987432 11 12355553210 0123677877654433 2
Q ss_pred HHhcC--C-CceEEEecccccCCCCC--CCCCCccceeeeeecCCCHHHHHHHHHHHHHHH
Q 012612 211 TYATA--L-SNVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADLKDDMACATAYLQYV 266 (460)
Q Consensus 211 l~~~g--~-~rvfeI~~~FR~E~~~~--~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l 266 (460)
.+.+. + =|+|++++|||+|...+ --=.-||+|.|.+..+.+.+++.+..++++...
T Consensus 111 ~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~~~ 171 (261)
T cd00778 111 WIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILDLY 171 (261)
T ss_pred hccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHHHHHHHH
Confidence 22221 2 26899999999998632 001349999999999999998888888776543
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria. |
| >cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.4e-05 Score=76.53 Aligned_cols=116 Identities=20% Similarity=0.163 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-C--CC------CCceeeeccccCC----ccccccccHHHHH-HHH
Q 012612 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-E--GA------GEQFCVTTLDFFE----KPAFLTVSGQLNA-ETY 212 (460)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g~------~~~F~v~~~~~~~----~~~~L~~Spql~l-~l~ 212 (460)
-.+++.+|.+.+++-+.+.||.||.||.|..... . |. .+.|.+.. --+ .+++|+...+... .+.
T Consensus 31 g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~~--~~~~~~~~~l~LrPt~e~~~~~~~ 108 (264)
T cd00772 31 AKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKD--AGDEELEEDFALRPTLEENIGEIA 108 (264)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEEEe--CCCCccCceEEECCCCCHHHHHHH
Confidence 4667889999999999999999999999987332 1 11 23344431 112 5678876655432 222
Q ss_pred h----c--CCC-ceEEEecccccCCCCCCC---CCCccceeeeeecCCCHHHHHHHHHHHHHH
Q 012612 213 A----T--ALS-NVYTFGPTFRAENSNTSR---HLAEFWMIEPELAFADLKDDMACATAYLQY 265 (460)
Q Consensus 213 ~----~--g~~-rvfeI~~~FR~E~~~~~r---Hl~EFt~lE~e~~~~~~~~~~~~~e~li~~ 265 (460)
. . .+. |+|++++|||+|.. +.+ =.-||+|.|.+....+.++..+..+.++..
T Consensus 109 ~~~i~s~~~LPlrl~~~~~~fR~E~r-~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~ 170 (264)
T cd00772 109 AKFIKSWKDLPQHLNQIGNKFRDEIR-PRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSA 170 (264)
T ss_pred HhhhhhhhccCeeEEEEeCeEeCcCC-CCCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHH
Confidence 1 1 233 89999999999953 211 135999999998668888887777777744
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=98.08 E-value=1e-05 Score=78.77 Aligned_cols=116 Identities=21% Similarity=0.174 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-C--C-----CCCceeeeccccCCccccccccHHH-----HHHHHh
Q 012612 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLDFFEKPAFLTVSGQL-----NAETYA 213 (460)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g-----~~~~F~v~~~~~~~~~~~L~~Spql-----~l~l~~ 213 (460)
-.+++..|.+.+++.|.+.||.||.||+|..... . | ..+.|.+. +--+.+++|+...+- +...+.
T Consensus 30 g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~--d~~~~~l~LrPt~e~~~t~~~~~~i~ 107 (255)
T cd00779 30 GLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLK--DRHGKEFLLGPTHEEVITDLVANEIK 107 (255)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEe--cCCCCeEEEecCCcHHHHHHHHhccc
Confidence 5678899999999999999999999999987221 1 1 12456553 222467888765432 222222
Q ss_pred c--CCC-ceEEEecccccC-CCCCC--CCCCccceeeeeecCCCHHHHHHHHHHHHHH
Q 012612 214 T--ALS-NVYTFGPTFRAE-NSNTS--RHLAEFWMIEPELAFADLKDDMACATAYLQY 265 (460)
Q Consensus 214 ~--g~~-rvfeI~~~FR~E-~~~~~--rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~ 265 (460)
. .+. |+|++++|||+| ..... | .-||+|.|++....+..+..+..++++..
T Consensus 108 s~~~LPlr~~~~~~~FR~E~~~~~Gl~R-~reF~q~e~~~~~~~~~~a~~~~~~i~~~ 164 (255)
T cd00779 108 SYKQLPLNLYQIQTKFRDEIRPRFGLMR-GREFLMKDAYSFDIDEESLEETYEKMYQA 164 (255)
T ss_pred cHhhCCHHHHhCcceecCCCCCCCceee-eeeEeHhhheeccCCHHHHHHHHHHHHHH
Confidence 2 233 899999999999 43222 3 25999999999777766666655555543
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes. |
| >TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.5e-05 Score=82.29 Aligned_cols=122 Identities=17% Similarity=0.152 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC--C------CCCCceeeeccccCCccccccccHHH-----HHHHH
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC--E------GAGEQFCVTTLDFFEKPAFLTVSGQL-----NAETY 212 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--e------g~~~~F~v~~~~~~~~~~~L~~Spql-----~l~l~ 212 (460)
.-.+++.+|.+.+|+.|.+.||.||.||.|.+... + -+.+.|.+. +-.+..++|+...|- +.+.+
T Consensus 45 ~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~--dr~~~~l~LrPT~Ee~~t~~~~~~i 122 (568)
T TIGR00409 45 LGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLK--DRKGREFVLGPTHEEVITDLARNEI 122 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhcEEEe--cCCCCEEEEcCCCcHHHHHHHHHHH
Confidence 45778899999999999999999999999998322 1 123567664 334667888864332 22233
Q ss_pred hcC--CC-ceEEEecccccC-CCCCC--CCCCccceeeeeecCCCHHHHHHHHHHHH---HHHHHHH
Q 012612 213 ATA--LS-NVYTFGPTFRAE-NSNTS--RHLAEFWMIEPELAFADLKDDMACATAYL---QYVVRYI 270 (460)
Q Consensus 213 ~~g--~~-rvfeI~~~FR~E-~~~~~--rHl~EFt~lE~e~~~~~~~~~~~~~e~li---~~l~~~~ 270 (460)
.+. +. |+|||++|||+| ..+.. | .-||+|.|.|.-..+.++.....+.++ ..+++.+
T Consensus 123 ~syr~LPlrlyqi~~~fR~E~rpr~Gl~R-~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~L 188 (568)
T TIGR00409 123 KSYKQLPLNLYQIQTKFRDEIRPRFGLMR-GREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRL 188 (568)
T ss_pred hhccccCeEEEEeeCEeeCCCCCCCCccc-cccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHh
Confidence 322 33 899999999999 43222 3 259999999997777666655555444 5555554
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi. |
| >PRK00037 hisS histidyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.2e-05 Score=79.64 Aligned_cols=104 Identities=18% Similarity=0.239 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCC------CCC----CCCceeeeccccCCccccccc--cHHHHHHHH
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEG----AGEQFCVTTLDFFEKPAFLTV--SGQLNAETY 212 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg----~~~~F~v~~~~~~~~~~~L~~--Spql~l~l~ 212 (460)
..-.+.+..+...+++.|.+.||.||.||++.... ++. ..+.|.+. +--++.+.|+. .+++...+.
T Consensus 15 p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~--d~~g~~l~LRpd~T~~~ar~~~ 92 (412)
T PRK00037 15 PEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQ--DKGGRSLTLRPEGTAPVVRAVI 92 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEE--cCCCCEEEecCCCcHHHHHHHH
Confidence 44577888999999999999999999999996532 111 23455543 22466667764 344433332
Q ss_pred hc--CCCceEEEecccccCCCCCCCCCCccceeeeeecCCC
Q 012612 213 AT--ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 213 ~~--g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~ 251 (460)
.. .--|+|++++|||+|... ..|.-||+|+++|.-..+
T Consensus 93 ~~~~~p~r~~~~g~vfR~e~~~-~gr~ref~Q~g~ei~g~~ 132 (412)
T PRK00037 93 EHKLQPFKLYYIGPMFRYERPQ-KGRYRQFHQFGVEVIGSD 132 (412)
T ss_pred hCCCCCeEEEEEcCccccCCCC-CCcccceEEcCeeeeCCC
Confidence 22 235899999999999874 456689999999985443
|
|
| >cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.2e-05 Score=76.19 Aligned_cols=113 Identities=18% Similarity=0.188 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---CC-----CCCceeeeccccCCccccccccHHHHH-HHHh----
Q 012612 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLDFFEKPAFLTVSGQLNA-ETYA---- 213 (460)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg-----~~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~---- 213 (460)
-.+++..|.+.+++.+.+.||.||.||+|..... .| ..+.|.++ --+..++|+....... .+.+
T Consensus 29 g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~---~~~~~l~LRP~~~~~~~~~~~~~~~ 105 (298)
T cd00771 29 GAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFE---EEDEEYGLKPMNCPGHCLIFKSKPR 105 (298)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEec---cCCceEEEcccCCHHHHHHHHhhcc
Confidence 5777899999999999999999999999977432 11 22355552 2235677765433322 2222
Q ss_pred c--CCC-ceEEEecccccCCCCC----CCCCCccceeeeeecCCCHHHHHHHHHHHHH
Q 012612 214 T--ALS-NVYTFGPTFRAENSNT----SRHLAEFWMIEPELAFADLKDDMACATAYLQ 264 (460)
Q Consensus 214 ~--g~~-rvfeI~~~FR~E~~~~----~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~ 264 (460)
. .+. |+|++++|||+|.+.+ .| .-||+|.|++.- ...++..+.+++++.
T Consensus 106 s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R-~reF~q~e~~i~-~~~e~~~~e~~e~l~ 161 (298)
T cd00771 106 SYRDLPLRLAEFGTVHRYEQSGALHGLTR-VRGFTQDDAHIF-CTPDQIKEEIKGVLD 161 (298)
T ss_pred chhhCCeEEEEecCcccCCCCCCCCCccc-cccEEECCEEEE-eCCcchHHHHHHHHH
Confidence 1 232 8999999999997631 12 249999999985 333444333333333
|
ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >PRK09194 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=7.9e-05 Score=80.71 Aligned_cols=123 Identities=17% Similarity=0.120 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC--C------CCCCceeeeccccCCccccccccHHHHH-HHH---
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC--E------GAGEQFCVTTLDFFEKPAFLTVSGQLNA-ETY--- 212 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--e------g~~~~F~v~~~~~~~~~~~L~~Spql~l-~l~--- 212 (460)
-.-.+++..|.+.+|+.|.+.||.||.||+|.+..- + -..+.|.+. +--+++++|+...+-.. .++
T Consensus 44 P~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~--d~~~~~l~LrPt~e~~~~~~~~~~ 121 (565)
T PRK09194 44 PLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRLK--DRHGRDFVLGPTHEEVITDLVRNE 121 (565)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhceEEe--cCCCCEEEECCCChHHHHHHHHhh
Confidence 345778999999999999999999999999986322 1 123466654 33467788886444222 221
Q ss_pred -hcC--C-CceEEEecccccC-CCCCC--CCCCccceeeeeecCCCHHHHHHHHHHHH---HHHHHHH
Q 012612 213 -ATA--L-SNVYTFGPTFRAE-NSNTS--RHLAEFWMIEPELAFADLKDDMACATAYL---QYVVRYI 270 (460)
Q Consensus 213 -~~g--~-~rvfeI~~~FR~E-~~~~~--rHl~EFt~lE~e~~~~~~~~~~~~~e~li---~~l~~~~ 270 (460)
.+. + -|+|||++|||+| ..+.. | .-||+|.|.|....+.++.....++++ ..+++.+
T Consensus 122 ~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R-~reF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~l 188 (565)
T PRK09194 122 IKSYKQLPLNLYQIQTKFRDEIRPRFGLMR-GREFIMKDAYSFHADEESLDETYDAMYQAYSRIFDRL 188 (565)
T ss_pred hhhcccCCeEEEEeeCCccCCCCCCCcccc-cccEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 121 2 3799999999999 33222 2 259999999997766555444444444 4455443
|
|
| >cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.3e-05 Score=77.88 Aligned_cols=95 Identities=25% Similarity=0.204 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHhhhhCC--ceeecCceeecCCCCCCCCceeeecc--ccCCccccccc--cHH---HHHHHHhcC--
Q 012612 147 VARVRNALAYATHKFFQENG--FIWISSPIITASDCEGAGEQFCVTTL--DFFEKPAFLTV--SGQ---LNAETYATA-- 215 (460)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~g--F~EV~TPiL~~~~~eg~~~~F~v~~~--~~~~~~~~L~~--Spq---l~l~l~~~g-- 215 (460)
-.+++..|.+.+|+.|...| |.||+||+|.+. ..|.+..- +.-+..++|+. +|. .+++.....
T Consensus 31 g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~------~mf~~~~g~~d~~~~~~~Lrp~~~~~~~~~~~~~~~~~~~ 104 (254)
T cd00774 31 GVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE------LMFKTSIGPVESGGNLGYLRPETAQGIFVNFKNLLEFNRR 104 (254)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCH------HHheeeecccCCCCcccccCCcccchHHHHHHHHHHHhCC
Confidence 47788999999999999885 999999999986 45654200 11234567764 321 233433222
Q ss_pred -C-CceEEEecccccCCCCC---CCCCCccceeeeeec
Q 012612 216 -L-SNVYTFGPTFRAENSNT---SRHLAEFWMIEPELA 248 (460)
Q Consensus 216 -~-~rvfeI~~~FR~E~~~~---~rHl~EFt~lE~e~~ 248 (460)
+ =|+||||+|||+|.+-. .| .-||||.|+|.-
T Consensus 105 ~lP~~~~qig~~fR~E~~~~~gl~R-~ReF~q~d~~~f 141 (254)
T cd00774 105 KLPFGVAQIGKSFRNEISPRNGLFR-VREFTQAEIEFF 141 (254)
T ss_pred CCCchhhhhchhhccccCcccceee-eccchhhheeee
Confidence 2 27999999999997522 12 469999999973
|
GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly |
| >KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.77 E-value=8.6e-05 Score=73.86 Aligned_cols=83 Identities=16% Similarity=0.235 Sum_probs=57.1
Q ss_pred CceeecCceeecCCCCCCCCceeeecc------c-cCCccccccccHHHHH-HHHhcCCCceEEEecccccCCCCCCCCC
Q 012612 166 GFIWISSPIITASDCEGAGEQFCVTTL------D-FFEKPAFLTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHL 237 (460)
Q Consensus 166 gF~EV~TPiL~~~~~eg~~~~F~v~~~------~-~~~~~~~L~~Spql~l-~l~~~g~~rvfeI~~~FR~E~~~~~rHl 237 (460)
.-.+..||+.+....-+.-- |+-++. . |-+....|+..--.|. +++..|.+.--..|-|||...+ +++|.
T Consensus 94 s~~~~~spvvt~~qnfdsl~-~p~dh~sr~ksdtyy~n~~~~lr~htsahq~e~~~~~~~~flv~~DVyrrdei-dsthy 171 (436)
T KOG2783|consen 94 SIFENESPVVTTYQNFDSLL-FPADHVSRSKSDTYYVNHTHCLRAHTSAHQHELFQKGLDGFLVTGDVYRRDEI-DSTHY 171 (436)
T ss_pred hhccCCCceeehhhhccccc-CcccccccCcCCceeecceeeehhcchhhHHHHHHhcccccceeeeeeeeccc-ccccc
Confidence 34788899888754422110 111110 2 3355666777666775 6888889998999999999988 57999
Q ss_pred CccceeeeeecCC
Q 012612 238 AEFWMIEPELAFA 250 (460)
Q Consensus 238 ~EFt~lE~e~~~~ 250 (460)
|=|.|+|.-.-++
T Consensus 172 pvfhq~eg~~~~s 184 (436)
T KOG2783|consen 172 PVFHQMEGVRLWS 184 (436)
T ss_pred ceeccccceeEEe
Confidence 9999999776654
|
|
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0001 Score=81.01 Aligned_cols=116 Identities=15% Similarity=0.174 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---CCCCC-----ceeeeccccCCccccccccHHHHH-HHHhcCC
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGAGE-----QFCVTTLDFFEKPAFLTVSGQLNA-ETYATAL 216 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg~~~-----~F~v~~~~~~~~~~~L~~Spql~l-~l~~~g~ 216 (460)
.-..++..|.+.+++.+.+.||.||.||+|....- .|..+ .|.+ +--++.++|+...+... .+....+
T Consensus 272 ~g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy~~---d~~~~~~~LrP~~~~~~~~~~~~~~ 348 (639)
T PRK12444 272 KGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKDNMYFS---EVDNKSFALKPMNCPGHMLMFKNKL 348 (639)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhhhcCee---cCCCcEEEEccCCCHHHHHHHhCcc
Confidence 34556777999999999999999999999987422 22222 3322 11245667876665543 3333221
Q ss_pred -------CceEEEecccccCCCCC--C--CCCCccceeeeeecCCCHHHHHHHHHHHHHHH
Q 012612 217 -------SNVYTFGPTFRAENSNT--S--RHLAEFWMIEPELAFADLKDDMACATAYLQYV 266 (460)
Q Consensus 217 -------~rvfeI~~~FR~E~~~~--~--rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l 266 (460)
-|+|++|+|||.|.+.+ . | .-||+|.|++ .|.+-+++.+..++++..+
T Consensus 349 ~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R-~reF~q~d~~-~f~~~~~~~~e~~~~~~~~ 407 (639)
T PRK12444 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLR-VRTFCQDDAH-LFVTPDQIEDEIKSVMAQI 407 (639)
T ss_pred cChhhCCceeEEeccccCCCCCcCCcCcce-eeeeEEccEE-EECCHHHHHHHHHHHHHHH
Confidence 38999999999997632 1 2 2489999999 6888777666655555443
|
|
| >TIGR00414 serS seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00011 Score=76.36 Aligned_cols=117 Identities=15% Similarity=0.240 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-CCC-------CCceeeeccccCCccccccccHHHHHH-HHhc
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGA-------GEQFCVTTLDFFEKPAFLTVSGQLNAE-TYAT 214 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~-------~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~ 214 (460)
.....++...+++.+++.+.+.||.||.||.|.+... ++. .+.|.++ +..+||....+..+- +...
T Consensus 169 ~p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~-----~~~~~L~pTsE~~~~~~~~~ 243 (418)
T TIGR00414 169 KNDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLE-----DTDLYLIPTAEVPLTNLHRN 243 (418)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEec-----CCCEEEEeCCcHHHHHHHhC
Confidence 3467888999999999999999999999999998433 222 2345442 356788877666553 2221
Q ss_pred C------C-CceEEEecccccCCCC------CCCCCCccceeeeeecCCCHHHHHHHHHHHHHHH
Q 012612 215 A------L-SNVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLKDDMACATAYLQYV 266 (460)
Q Consensus 215 g------~-~rvfeI~~~FR~E~~~------~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l 266 (460)
- + =|+|++++|||+|-.. +--=.-||+|.|.+ .|.+-++..+..++++...
T Consensus 244 ~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~-~f~~~e~s~~~~~~~~~~~ 307 (418)
T TIGR00414 244 EILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELV-KFCKPEESAEELEEMTSDA 307 (418)
T ss_pred cCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEE-EEcCHHHHHHHHHHHHHHH
Confidence 1 2 3699999999999531 10013499999994 5888888877777766654
|
This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model. |
| >PRK05431 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00012 Score=76.46 Aligned_cols=116 Identities=17% Similarity=0.293 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHHHHhhh-hCCceeecCceeecCCC-CCC-------CCceeeeccccCCccccccccHHHHHH-HHhc
Q 012612 145 GAVARVRNALAYATHKFFQ-ENGFIWISSPIITASDC-EGA-------GEQFCVTTLDFFEKPAFLTVSGQLNAE-TYAT 214 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~-~~gF~EV~TPiL~~~~~-eg~-------~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~ 214 (460)
....++...+++.+++.+. +.||.||.||.|.+... ++. .+.|.++ +.++||....|..+- ++..
T Consensus 167 p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i~-----~~~~~L~pTsE~~l~~l~~~ 241 (425)
T PRK05431 167 GDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIE-----DDDLYLIPTAEVPLTNLHRD 241 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEec-----CCCEEEEeCCcHHHHHHHhc
Confidence 3577889999999999998 99999999999998433 222 1344442 467888877776653 3332
Q ss_pred C------C-CceEEEecccccCCCCC--CC----CCCccceeeeeecCCCHHHHHHHHHHHHHHH
Q 012612 215 A------L-SNVYTFGPTFRAENSNT--SR----HLAEFWMIEPELAFADLKDDMACATAYLQYV 266 (460)
Q Consensus 215 g------~-~rvfeI~~~FR~E~~~~--~r----Hl~EFt~lE~e~~~~~~~~~~~~~e~li~~l 266 (460)
- + =|+|++++|||+|-... .+ =.-||+|.|.+ +|..-++..+..++++...
T Consensus 242 ~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~-~f~~~e~s~~~~~~~l~~~ 305 (425)
T PRK05431 242 EILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELV-KFTKPEDSYAELEELTANA 305 (425)
T ss_pred ccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEE-EEECHHHHHHHHHHHHHHH
Confidence 2 2 37999999999996411 01 13499999999 5887788877777777654
|
|
| >KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.72 E-value=3.9e-05 Score=75.66 Aligned_cols=117 Identities=21% Similarity=0.344 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCC--------------CCCCCCceeeecc--------cc--------
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD--------------CEGAGEQFCVTTL--------DF-------- 194 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~--------------~eg~~~~F~v~~~--------~~-------- 194 (460)
+-.+++|++ +|++|-+.||.|..|---+.+. .-.+.|.|.+..+ +|
T Consensus 212 HPLmKvR~e----FRqiF~emGFsEMptn~yVEssFWNFDALfqPQqHpARDahDTFfl~~Pa~s~~~p~dY~~rVk~vH 287 (483)
T KOG2784|consen 212 HPLMKVREE----FRQIFFEMGFSEMPTNNYVESSFWNFDALFQPQQHPARDAHDTFFLKDPATSTKFPEDYLERVKAVH 287 (483)
T ss_pred chHHHHHHH----HHHHHHHccccccccccchhhccccchhhcCcccCCccccccceEecChhhcccCCHHHHHHHHHHH
Confidence 446676655 6889999999999887654331 1233444544322 00
Q ss_pred ----CC-------------cccccc-----ccHHHHHHHHhcCC--CceEEEecccccCCCCCCCCCCccceeeeeecCC
Q 012612 195 ----FE-------------KPAFLT-----VSGQLNAETYATAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 250 (460)
Q Consensus 195 ----~~-------------~~~~L~-----~Spql~l~l~~~g~--~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~ 250 (460)
|| ++.-|+ +|.-+.-+|.-.|| .|+|.|-+|||||.. +.+||.||.|+|--.+-.
T Consensus 288 ~~G~ygs~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LAk~~f~p~K~FSIDrVFRNEtv-DaTHLAEFHQVEGviad~ 366 (483)
T KOG2784|consen 288 EQGGYGSIGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLAKKGFKPAKYFSIDRVFRNETV-DATHLAEFHQVEGVIADK 366 (483)
T ss_pred hcCCcCCcccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHHhCCCCcccccchhhhhhcccc-chHHHHHHhhhceeeecC
Confidence 11 112233 23322224445666 579999999999999 689999999999877754
Q ss_pred --CHHHHHHHHHHHHHHH
Q 012612 251 --DLKDDMACATAYLQYV 266 (460)
Q Consensus 251 --~~~~~~~~~e~li~~l 266 (460)
++-++|.++++++..+
T Consensus 367 gltLgdLig~l~~ff~~l 384 (483)
T KOG2784|consen 367 GLTLGDLIGILMEFFTKL 384 (483)
T ss_pred CCcHHHHHHHHHHHHhcc
Confidence 6889999888877653
|
|
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00017 Score=79.75 Aligned_cols=123 Identities=19% Similarity=0.166 Sum_probs=84.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-C--CC-----CCceeeeccccCCccccccccHHHHH-HHHh
Q 012612 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--GA-----GEQFCVTTLDFFEKPAFLTVSGQLNA-ETYA 213 (460)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g~-----~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~ 213 (460)
+.-.-.+++..|++.+|+.+.+.||.||.||.|.+..- . |. .+.|.+ +--+..++|+....... .+..
T Consensus 316 ~lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~---~~~~~~~~Lrp~~~~~~~~~~~ 392 (686)
T PLN02908 316 FLPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVF---EIEKQEFGLKPMNCPGHCLMFA 392 (686)
T ss_pred EechHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEE---ecCCeeEEEcCCCcHHHHHHHh
Confidence 34567889999999999999999999999999987432 1 11 124444 22246677775544433 2222
Q ss_pred cC------C-CceEEEecccccCCCC---CCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHH
Q 012612 214 TA------L-SNVYTFGPTFRAENSN---TSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRY 269 (460)
Q Consensus 214 ~g------~-~rvfeI~~~FR~E~~~---~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~ 269 (460)
.- + =|+|++++|||+|.+. +-.=.-||+|.|++. |.+.+++.+.+++++..+..-
T Consensus 393 ~~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~~~q~~~e~~~~l~~~~~v 457 (686)
T PLN02908 393 HRVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCREDQIKDEVKGVLDFLDYV 457 (686)
T ss_pred ccccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEE-EcCHHHHHHHHHHHHHHHHHH
Confidence 11 1 1799999999999772 111134899999998 888888888888877665443
|
|
| >PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00025 Score=69.93 Aligned_cols=111 Identities=18% Similarity=0.249 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCC---CCCCceeeeccccCCccccccc--cHHHHHHHHhc-----C
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCE---GAGEQFCVTTLDFFEKPAFLTV--SGQLNAETYAT-----A 215 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~e---g~~~~F~v~~~~~~~~~~~L~~--Spql~l~l~~~-----g 215 (460)
.-...+..+.+.+++.|...||-||+||++--...- ...+.|.+. +.-|+.+-||. .+++-. +++. .
T Consensus 17 ~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~~~--D~~g~~l~LRpD~T~~iaR-~~a~~~~~~~ 93 (281)
T PRK12293 17 KSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSIADEKELIRFS--DEKNHQISLRADSTLDVVR-IVTKRLGRST 93 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcccchhceEEEE--CCCCCEEEECCcCCHHHHH-HHHHhcccCC
Confidence 456788899999999999999999999999764331 223455543 33455556662 333332 2222 1
Q ss_pred -CCceEEEecccccCCCCCCCCCCccceeeeeecCC-CHHHHHHHHHHHHHHH
Q 012612 216 -LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYV 266 (460)
Q Consensus 216 -~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~-~~~~~~~~~e~li~~l 266 (460)
--|.|++++|||.|. .||+|+.+|.-.. +..|++.++-+.++.+
T Consensus 94 ~p~r~~Y~g~vfR~~~-------rEf~Q~GvEliG~~~~~Evi~la~~~l~~l 139 (281)
T PRK12293 94 EHKKWFYIQPVFRYPS-------NEIYQIGAELIGEEDLSEILNIAAEIFEEL 139 (281)
T ss_pred CceeEEEeccEEecCC-------CcccccCeEeeCCCCHHHHHHHHHHHHHHc
Confidence 238999999999873 4999999999766 4656666666555544
|
|
| >cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00011 Score=73.20 Aligned_cols=116 Identities=17% Similarity=0.281 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-C--CC-----CCceeeeccccCCccccccccHHHHH-HHHhcC
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--GA-----GEQFCVTTLDFFEKPAFLTVSGQLNA-ETYATA 215 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g~-----~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~~g 215 (460)
-...+++.+|.+.+++.+.+.||.||.||.|.+... + |- .+.|.+. +.+++|+...+... .+...-
T Consensus 49 p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v~-----~~~~~L~pt~e~~~~~l~~~~ 123 (297)
T cd00770 49 GDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVE-----GEDLYLIATAEVPLAALHRDE 123 (297)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEec-----CCCEEEeecCCHHHHHHHhcc
Confidence 346788999999999999999999999999998433 2 21 2345542 25678887776655 333221
Q ss_pred ------C-CceEEEecccccCCC------CCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHH
Q 012612 216 ------L-SNVYTFGPTFRAENS------NTSRHLAEFWMIEPELAFADLKDDMACATAYLQYV 266 (460)
Q Consensus 216 ------~-~rvfeI~~~FR~E~~------~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l 266 (460)
+ =|+|++++|||+|.. .+---.-||+|.|.+. |..-++..+..++++...
T Consensus 124 ~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~-f~~~e~~~~~~~~~l~~~ 186 (297)
T cd00770 124 ILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFV-FTKPEESWEELEELISNA 186 (297)
T ss_pred cCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEE-EECchHHHHHHHHHHHHH
Confidence 2 379999999999965 1111246999999974 665566666665555443
|
SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer. |
| >PRK12305 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00021 Score=77.65 Aligned_cols=124 Identities=19% Similarity=0.232 Sum_probs=80.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---CCC-----CCceeeeccccCCccccccccH-HHHHHHHh
Q 012612 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGA-----GEQFCVTTLDFFEKPAFLTVSG-QLNAETYA 213 (460)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg~-----~~~F~v~~~~~~~~~~~L~~Sp-ql~l~l~~ 213 (460)
.+-.-.+++..|.+.+++.+.+.||.||.||+|....- .|. .+.|.+. +--++.++|+.-. ..+-++.+
T Consensus 201 ~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~--d~~~~~~~LRP~~~~~~~~~~~ 278 (575)
T PRK12305 201 WHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPM--EIDEEEYYLKPMNCPGHILIYK 278 (575)
T ss_pred EeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhccccc--ccCCceEEEecCCCHHHHHHHh
Confidence 34567788999999999999999999999999987422 122 1345442 2235667777322 22222222
Q ss_pred c------CCC-ceEEEecccccCCCCCCC---CCCccceeeeeecCCCHHHHHHHHHHHHHHHHHH
Q 012612 214 T------ALS-NVYTFGPTFRAENSNTSR---HLAEFWMIEPELAFADLKDDMACATAYLQYVVRY 269 (460)
Q Consensus 214 ~------g~~-rvfeI~~~FR~E~~~~~r---Hl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~ 269 (460)
. .+. |.|++|+|||+|.+...+ =.-||+|.|++. |.+.+...+.+.+++..+..-
T Consensus 279 ~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~i-f~~~~~~~~e~~e~i~l~~~~ 343 (575)
T PRK12305 279 SRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHI-FCTPDQIEDEILKVLDFVLEL 343 (575)
T ss_pred cccCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEE-EeCHHHHHHHHHHHHHHHHHH
Confidence 1 232 899999999999773111 125999999995 767666666555555554443
|
|
| >TIGR00418 thrS threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0004 Score=75.32 Aligned_cols=116 Identities=16% Similarity=0.148 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---CCCC-----CceeeeccccCCccccccccHHHHH-HHHhc
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGAG-----EQFCVTTLDFFEKPAFLTVSGQLNA-ETYAT 214 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg~~-----~~F~v~~~~~~~~~~~L~~Spql~l-~l~~~ 214 (460)
+-.-.+++..|.+.+|+.+.+.||.||.||++....- .|.. +.|.++ +--++.++|+....... ++.+.
T Consensus 196 ~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~~--d~~~~~~~LrP~~~~~i~~~~~~ 273 (563)
T TIGR00418 196 LPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPFT--ELDNREFMLKPMNCPGHFLIFKS 273 (563)
T ss_pred eccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhcceec--cCCCceEEEecCCCHHHHHHHhC
Confidence 4456778899999999999999999999999986422 1222 244432 22246788886554432 33322
Q ss_pred C------C-CceEEEecccccCCCCCC-----CCCCccceeeeeecCCCHHHHHHHHHHHHH
Q 012612 215 A------L-SNVYTFGPTFRAENSNTS-----RHLAEFWMIEPELAFADLKDDMACATAYLQ 264 (460)
Q Consensus 215 g------~-~rvfeI~~~FR~E~~~~~-----rHl~EFt~lE~e~~~~~~~~~~~~~e~li~ 264 (460)
. + -|+|++|+|||+|.+ +. |- -||+|.|+|.- ...++.....++++.
T Consensus 274 ~~~s~~~lP~rl~~~g~~fR~E~~-g~~~Gl~R~-reF~q~~~~~~-~~~~~~~~e~~~~i~ 332 (563)
T TIGR00418 274 SLRSYRDLPLRIAELGYSHRYEQS-GELHGLMRV-RGFTQDDAHIF-CTEDQIKEEFKNQFR 332 (563)
T ss_pred cCCChHHCCceeeEeccccCCCCC-cCCcCcccc-cceEEeeeEEE-cCHHHHHHHHHHHHH
Confidence 1 2 389999999999955 32 32 49999999974 334544444333333
|
This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether.. |
| >CHL00201 syh histidine-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00036 Score=73.11 Aligned_cols=117 Identities=15% Similarity=0.161 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCC------CCCC----CCceeeeccccCCccccccc--cHHHHHHHHh
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGA----GEQFCVTTLDFFEKPAFLTV--SGQLNAETYA 213 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg~----~~~F~v~~~~~~~~~~~L~~--Spql~l~l~~ 213 (460)
.-...|..+.+.+++.|...||-||.||++-... ++.. .+.|.+. +.-++.+.|+. .|++..-...
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~--d~~g~~l~LRpd~T~~iaR~~~~ 93 (430)
T CHL00201 16 DEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFT--DRSNRDITLRPEGTAGIVRAFIE 93 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEE--cCCCCEEEeCCCCcHHHHHHHHH
Confidence 4566789999999999999999999999997632 1111 2455543 23356667773 3444322111
Q ss_pred -----cCC-CceEEEecccccCCCCCCCCCCccceeeeeecCCC-H---HHHHHHHHHHHHH
Q 012612 214 -----TAL-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L---KDDMACATAYLQY 265 (460)
Q Consensus 214 -----~g~-~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~-~---~~~~~~~e~li~~ 265 (460)
... -|.|++|+|||.|.+...|- -||+|+++|.-..+ . -|++.++-+.++.
T Consensus 94 ~~~~~~~~p~R~~y~g~vfR~e~~q~GR~-Ref~Q~g~EiiG~~~~~aD~Evi~l~~~~l~~ 154 (430)
T CHL00201 94 NKMDYHSNLQRLWYSGPMFRYERPQSGRQ-RQFHQLGIEFIGSIDARADTEVIHLAMQIFNE 154 (430)
T ss_pred ccccccCCCeEEEEEcceecCCCCcCCcc-ceeEEeceEEECCCChhhHHHHHHHHHHHHHH
Confidence 112 38999999999998766665 59999999986553 2 2455554444443
|
|
| >TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00017 Score=76.28 Aligned_cols=120 Identities=16% Similarity=0.167 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---CC------CCCceeeeccc--cCCccccccccHHHHH-HHH--
Q 012612 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---EG------AGEQFCVTTLD--FFEKPAFLTVSGQLNA-ETY-- 212 (460)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg------~~~~F~v~~~~--~~~~~~~L~~Spql~l-~l~-- 212 (460)
-.+++..|.+.+++-+.+.||.||.||.|.+..- +| ..+.|.++... -.+.+++|+...+-.. .+.
T Consensus 37 g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~ 116 (472)
T TIGR00408 37 GFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKK 116 (472)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhc
Confidence 3566899999999999999999999999977322 12 23466665321 1246788887665433 222
Q ss_pred --hcC--C-CceEEEecccccCCCCCC--CCCCccceeeeeecCCCHHHHHHHHHHHHHHH
Q 012612 213 --ATA--L-SNVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFADLKDDMACATAYLQYV 266 (460)
Q Consensus 213 --~~g--~-~rvfeI~~~FR~E~~~~~--rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l 266 (460)
.+. + -|+||+++|||+|...+. -=.-||+|-|.+..+.+.++..+..+.++...
T Consensus 117 ~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~y 177 (472)
T TIGR00408 117 WVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDIY 177 (472)
T ss_pred cccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHHH
Confidence 221 2 278999999999986310 11359999999998999888877777766543
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. |
| >PRK12325 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0005 Score=72.19 Aligned_cols=116 Identities=19% Similarity=0.164 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC--C-C-----CCCceeeeccccCCccccccccH-HH----HHHHH
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC--E-G-----AGEQFCVTTLDFFEKPAFLTVSG-QL----NAETY 212 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--e-g-----~~~~F~v~~~~~~~~~~~L~~Sp-ql----~l~l~ 212 (460)
.-.+++.+|.+.+|+-+.+.||.||.||.|.+..- . | ..+.|.+. +--+.+++|+... +. ++..+
T Consensus 45 ~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~--d~~~~~~~L~Pt~e~~~~~~~~~~~ 122 (439)
T PRK12325 45 LGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRIK--DRHDREMLYGPTNEEMITDIFRSYV 122 (439)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhheEEe--cCCCCEEEEcCCCcHHHHHHHHHHh
Confidence 35788999999999999999999999999997411 0 1 12466653 2235677777533 22 22222
Q ss_pred hc--CC-CceEEEecccccCCCCCCCC----CCccceeeeeecCCCHHHHHHHHHHHHHH
Q 012612 213 AT--AL-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQY 265 (460)
Q Consensus 213 ~~--g~-~rvfeI~~~FR~E~~~~~rH----l~EFt~lE~e~~~~~~~~~~~~~e~li~~ 265 (460)
.+ .+ -|+||++++||+|.. + +| .-||+|-|.|....+.+++.+..++++..
T Consensus 123 ~syrdLPlrl~q~~~~fR~E~~-~-~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~~ 180 (439)
T PRK12325 123 KSYKDLPLNLYHIQWKFRDEIR-P-RFGVMRGREFLMKDAYSFDLDEEGARHSYNRMFVA 180 (439)
T ss_pred hhchhhchHheEecCEecCCCC-C-CCCccccceEeEeccEEEeCCHHHHHHHHHHHHHH
Confidence 22 13 479999999999954 2 32 46999999998767877776655555543
|
|
| >PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00046 Score=69.02 Aligned_cols=116 Identities=20% Similarity=0.266 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCC------CCCCCCceeeeccccCCcccccccc--HHHHHHHHhc--
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGAGEQFCVTTLDFFEKPAFLTVS--GQLNAETYAT-- 214 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg~~~~F~v~~~~~~~~~~~L~~S--pql~l~l~~~-- 214 (460)
..-.+.+..+.+.+++.|.+.||.+|+||++.... ++...+.|.+. +--|..+-|+-- +++. ++++.
T Consensus 7 ~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~~--D~~G~~l~LR~D~T~~ia-R~~a~~~ 83 (311)
T PF13393_consen 7 PEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDNMYRFL--DRSGRVLALRPDLTVPIA-RYVARNL 83 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEEE--CTTSSEEEE-SSSHHHHH-HHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccchhhhEEEE--ecCCcEeccCCCCcHHHH-HHHHHhc
Confidence 34578889999999999999999999999997642 22223455543 335666666632 2332 33332
Q ss_pred ---CCCceEEEecccccCCCCCCCCCCccceeeeeecCCC-HH---HHHHHHHHHHH
Q 012612 215 ---ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LK---DDMACATAYLQ 264 (460)
Q Consensus 215 ---g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~-~~---~~~~~~e~li~ 264 (460)
-..|+|++|+|||.+... ..+.-||+|+.+|.-..+ .. |++.++-+++.
T Consensus 84 ~~~~~~r~~y~g~vfR~~~~~-~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~ 139 (311)
T PF13393_consen 84 NLPRPKRYYYIGPVFRYERPG-KGRPREFYQCGFEIIGSSSLEADAEVIKLADEILD 139 (311)
T ss_dssp GSSSSEEEEEEEEEEEEETTT-TTBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHH
T ss_pred CcCCCceEEEEcceeeccccC-CCCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 246799999999999763 345589999999987654 44 66666666665
|
... |
| >PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00037 Score=72.16 Aligned_cols=118 Identities=19% Similarity=0.123 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-------CCCCCceeeecccc-CCccccccc--cHHHHHHHHhc
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-------EGAGEQFCVTTLDF-FEKPAFLTV--SGQLNAETYAT 214 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-------eg~~~~F~v~~~~~-~~~~~~L~~--Spql~l~l~~~ 214 (460)
..-.+.|..+...+++.|.+.||.||.||++..... +...+.|.+. +. -|..+.|+. .+++- ++++.
T Consensus 14 p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~--d~~~g~~l~LRpD~T~~ia-R~~a~ 90 (391)
T PRK12292 14 PEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLV--DQLSGRTLGLRPDMTAQIA-RIAAT 90 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEEe--ecCCCCEEEECCCCcHHHH-HHHHH
Confidence 345678899999999999999999999999964211 1122355443 33 355566662 33332 33322
Q ss_pred C------CCceEEEecccccCCCCCCCCCCccceeeeeecCCC-H---HHHHHHHHHHHHHH
Q 012612 215 A------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L---KDDMACATAYLQYV 266 (460)
Q Consensus 215 g------~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~-~---~~~~~~~e~li~~l 266 (460)
. --|+|++++|||.|.... -+.-||+|+.+|.-..+ . -|++.++-+.+..+
T Consensus 91 ~~~~~~~p~r~~y~g~vfR~~~~~~-gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~l 151 (391)
T PRK12292 91 RLANRPGPLRLCYAGNVFRAQERGL-GRSREFLQSGVELIGDAGLEADAEVILLLLEALKAL 151 (391)
T ss_pred hccCCCCCeEEEeeceeeecCCCcC-CCccchhccceEEeCCCCchHHHHHHHHHHHHHHHc
Confidence 1 238999999999997743 34579999999986553 2 35566665555554
|
|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00045 Score=76.06 Aligned_cols=118 Identities=16% Similarity=0.175 Sum_probs=75.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---CC-----CCCceeeeccccCCccccccccHHHH-HHHHh
Q 012612 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLDFFEKPAFLTVSGQLN-AETYA 213 (460)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg-----~~~~F~v~~~~~~~~~~~L~~Spql~-l~l~~ 213 (460)
.+-.-.+++..|.+.+++.+.+.||.||.||++....- .| ..+.|.+. +--++.+.|+....-. -++.+
T Consensus 265 ~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~--d~~~~~~~LRP~~~~~~~r~~~ 342 (638)
T PRK00413 265 WHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPTT--ESDGEEYALKPMNCPGHVQIYK 342 (638)
T ss_pred EcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhccceee--cCCCcEEEEecCCcHHHHHHHh
Confidence 34566788999999999999999999999999976321 12 12345542 2235667776422221 23222
Q ss_pred c------CC-CceEEEecccccCCCCC--C--CCCCccceeeeeecCCCHHHHHHHHHHHHH
Q 012612 214 T------AL-SNVYTFGPTFRAENSNT--S--RHLAEFWMIEPELAFADLKDDMACATAYLQ 264 (460)
Q Consensus 214 ~------g~-~rvfeI~~~FR~E~~~~--~--rHl~EFt~lE~e~~~~~~~~~~~~~e~li~ 264 (460)
. .+ -|+|++|+|||+|.+.. . | .-||||.|++. |.+-+...+.+.+++.
T Consensus 343 ~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R-~reF~q~~~~~-~g~~~~~~~e~~eii~ 402 (638)
T PRK00413 343 QGLRSYRDLPLRLAEFGTVHRYEPSGALHGLMR-VRGFTQDDAHI-FCTPEQIEEEVKKVID 402 (638)
T ss_pred CcCCChhhCCceeeeccCeecCCCCCCCcCcce-eeeeEEeeEEE-EcCHHHHHHHHHHHHH
Confidence 1 22 28999999999998732 1 2 24999999997 6554444433334443
|
|
| >PRK14799 thrS threonyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00033 Score=75.09 Aligned_cols=122 Identities=13% Similarity=0.094 Sum_probs=83.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---CCCC-----CceeeeccccCCccccccccHHHHH-HHHh
Q 012612 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGAG-----EQFCVTTLDFFEKPAFLTVSGQLNA-ETYA 213 (460)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg~~-----~~F~v~~~~~~~~~~~L~~Spql~l-~l~~ 213 (460)
+.-.-.++|..|...+|+.+.+.||.||.||.+....- .|.- +.|.+ +--+++++|+.-..... .+..
T Consensus 163 ~lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~---~~~~e~~~LrPm~cp~~~~~~~ 239 (545)
T PRK14799 163 FHPKGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVF---NMEGDEYGVKPMNCPAHILIYK 239 (545)
T ss_pred EcChHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhhccccccchhhccee---eccCceEEeccCCCHHHHHHHh
Confidence 34567889999999999999999999999999866322 1111 23433 22256777775444433 2222
Q ss_pred cC------C-CceEEEecccccCCCCC----CCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHH
Q 012612 214 TA------L-SNVYTFGPTFRAENSNT----SRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRY 269 (460)
Q Consensus 214 ~g------~-~rvfeI~~~FR~E~~~~----~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~ 269 (460)
.. + =|+||+|+|||+|.+.. .| .-||||.|+.. |.+.+++.+.+.+++.-+..-
T Consensus 240 ~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~R-vReF~Q~DaHi-f~~~~q~~~E~~~~l~~i~~v 304 (545)
T PRK14799 240 SKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLR-VRGFVQDDGHI-FLREDQLREEIKMLISKTVEV 304 (545)
T ss_pred ccccChhhCCHhhEEecceecCCCCCCcccccc-ceeEEEcccEE-EeCHHHHHHHHHHHHHHHHHH
Confidence 21 1 27899999999998842 13 35999999998 888887777776666655443
|
|
| >PLN02972 Histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0007 Score=74.47 Aligned_cols=121 Identities=13% Similarity=0.151 Sum_probs=79.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCC------CCCCCCceeeeccccCCccccccccHHHHH-HHHhcC
Q 012612 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGAGEQFCVTTLDFFEKPAFLTVSGQLNA-ETYATA 215 (460)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg~~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~~g 215 (460)
.+-.-...|..|...+++.|...||.||+||++-... ++.....|... +.-|+.+.|+----.-. ++++..
T Consensus 336 ~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~f~--D~gGr~LaLRPDlTvPiAR~vA~n 413 (763)
T PLN02972 336 FAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGEDSKLIYDLA--DQGGELCSLRYDLTVPFARYVAMN 413 (763)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcchhheEEEE--CCCCCEEEeCCCChHHHHHHHHhC
Confidence 4556678899999999999999999999999986522 22222345443 33455566663221211 433321
Q ss_pred ---CCceEEEecccccCCCCCCCCCCccceeeeeecCC-C-H---HHHHHHHHHHHHHH
Q 012612 216 ---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-D-L---KDDMACATAYLQYV 266 (460)
Q Consensus 216 ---~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~-~-~---~~~~~~~e~li~~l 266 (460)
--|.|+|++|||.|..... +.-||+|+++|.... + . -|++.++-+.+..+
T Consensus 414 ~~~p~KrYyiG~VFR~e~pqkG-R~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~L 471 (763)
T PLN02972 414 GITSFKRYQIAKVYRRDNPSKG-RYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDEL 471 (763)
T ss_pred CCCcceEEEeccEEecCCCCCC-CCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHhC
Confidence 2367889999999977433 457999999999764 2 2 36666666666544
|
|
| >PRK08661 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00027 Score=74.95 Aligned_cols=118 Identities=19% Similarity=0.104 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---C-C-----CCCceeeeccc--cCCccccccccHHH-----HH
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-G-----AGEQFCVTTLD--FFEKPAFLTVSGQL-----NA 209 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---e-g-----~~~~F~v~~~~--~~~~~~~L~~Spql-----~l 209 (460)
.-.+++..|.+.+++.|.+.||.||.||.|.+..- + + ..+.|.|+... -.+.+++|+...+- +.
T Consensus 42 ~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~ 121 (477)
T PRK08661 42 YGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMYK 121 (477)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHHHH
Confidence 35788899999999999999999999999977422 1 2 22466664321 12467888866533 22
Q ss_pred HHHhcC--C-CceEEEecccccCCCCCC--CCCCccceeeeeecCCCHHHHHHHHHHHHH
Q 012612 210 ETYATA--L-SNVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFADLKDDMACATAYLQ 264 (460)
Q Consensus 210 ~l~~~g--~-~rvfeI~~~FR~E~~~~~--rHl~EFt~lE~e~~~~~~~~~~~~~e~li~ 264 (460)
+.+.+. + =|+||+++|||+|.. +. -=.-||+|.|.+..+.+.++..+..++++.
T Consensus 122 ~~i~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~ 180 (477)
T PRK08661 122 KWIQSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEEAEEETLEMLE 180 (477)
T ss_pred hhhcchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHH
Confidence 322222 2 268999999999976 33 124599999999999998888777777664
|
|
| >PLN02530 histidine-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00087 Score=71.35 Aligned_cols=118 Identities=15% Similarity=0.156 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC------C-CCCCceeeeccccCCccccccc--cHHHHHHHHhc
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC------E-GAGEQFCVTTLDFFEKPAFLTV--SGQLNAETYAT 214 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~------e-g~~~~F~v~~~~~~~~~~~L~~--Spql~l~l~~~ 214 (460)
+-.-.+.|..|...+++.|...||.||.||++-.... + ...+.|... +.-|+.+.|+. .+++. ++++.
T Consensus 80 lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f~--D~~g~~l~LRpD~T~~ia-R~~~~ 156 (487)
T PLN02530 80 PPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEEITDQLYNFE--DKGGRRVALRPELTPSLA-RLVLQ 156 (487)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcccccceEEEE--CCCCCEEecCCCCcHHHH-HHHHh
Confidence 3456778999999999999999999999999976321 1 122345432 33456666663 23332 33322
Q ss_pred C-----C-CceEEEecccccCCCCCCCCCCccceeeeeecCCC----HHHHHHHHHHHHHH
Q 012612 215 A-----L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDMACATAYLQY 265 (460)
Q Consensus 215 g-----~-~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~----~~~~~~~~e~li~~ 265 (460)
. + -|.|++++|||.|.....| .-||+|+.+|.-..+ --|++.++.+.+..
T Consensus 157 ~~~~~~~P~r~~y~g~vfR~e~~q~gr-~REf~Q~giEiiG~~~~~aDaEvi~l~~~~l~~ 216 (487)
T PLN02530 157 KGKSLSLPLKWFAIGQCWRYERMTRGR-RREHYQWNMDIIGVPGVEAEAELLAAIVTFFKR 216 (487)
T ss_pred cccccCCCeEEEEEcCEEcCcCCCCCC-ccceEEcCeeEeCCCCcchhHHHHHHHHHHHHH
Confidence 1 2 3899999999999874444 579999999986543 12555555554443
|
|
| >PRK03991 threonyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00067 Score=73.84 Aligned_cols=124 Identities=16% Similarity=0.200 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-------CC-CCCceeeeccccCCccccccccHHHHHH-----
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-------EG-AGEQFCVTTLDFFEKPAFLTVSGQLNAE----- 210 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-------eg-~~~~F~v~~~~~~~~~~~L~~Spql~l~----- 210 (460)
.-.-.+++..|.+.+++.+.+.||.+|.||.+..... ++ ..+.|.++. -+..++|+...+...=
T Consensus 223 ~P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~---~~e~l~Lrp~~c~~~~~~~~~ 299 (613)
T PRK03991 223 YPKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKS---DKKDLMLRFAACFGQFLMLKD 299 (613)
T ss_pred EcHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEecC---CCceEEEecCCCHHHHHHHhC
Confidence 4567889999999999999999999999998854311 11 224565532 2466777754443221
Q ss_pred HHhcC--C-CceEEEec-ccccCCCCC---CCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHH
Q 012612 211 TYATA--L-SNVYTFGP-TFRAENSNT---SRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYI 270 (460)
Q Consensus 211 l~~~g--~-~rvfeI~~-~FR~E~~~~---~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~ 270 (460)
...+. + =|+||+++ |||+|.+.. -.=.-||||-|++.--.+.++.++..++++..+..-+
T Consensus 300 ~~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i~ 366 (613)
T PRK03991 300 MTISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILETG 366 (613)
T ss_pred CcCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 11111 2 36899999 999997521 1124599999999855568999988888887765543
|
|
| >PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.001 Score=68.78 Aligned_cols=118 Identities=12% Similarity=0.095 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-------CCCCCceeeecccc-CCcccccc--ccHHHHHHHHh-
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-------EGAGEQFCVTTLDF-FEKPAFLT--VSGQLNAETYA- 213 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-------eg~~~~F~v~~~~~-~~~~~~L~--~Spql~l~l~~- 213 (460)
-.-.+.+..+.+.+++.|...||.||+||++..... +.....|.+. +. -|+.+-|+ ..+++-. +.+
T Consensus 18 p~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~--D~~~g~~l~LRpD~T~~iaR-~~a~ 94 (392)
T PRK12421 18 PEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLI--DQLSGRLMGVRADITPQVAR-IDAH 94 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEEE--cCCCCcEEEECCcCCHHHHH-HHHh
Confidence 345678899999999999999999999999975321 1112344432 22 24445555 2333332 221
Q ss_pred ----cCCCceEEEecccccCCCCCCCCCCccceeeeeecCCC-HH---HHHHHHHHHHHHH
Q 012612 214 ----TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LK---DDMACATAYLQYV 266 (460)
Q Consensus 214 ----~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~-~~---~~~~~~e~li~~l 266 (460)
..--|.|.+++|||.+.....|. -||+|+.+|.-..+ .. |++.++-+.++.+
T Consensus 95 ~~~~~~p~R~~Y~g~VfR~~~~~~gr~-rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~l 154 (392)
T PRK12421 95 LLNREGVARLCYAGSVLHTLPQGLFGS-RTPLQLGAELYGHAGIEADLEIIRLMLGLLRNA 154 (392)
T ss_pred hcCCCCceEEEEeeeEEEcCCCcCCCc-CccceeceEEeCCCCchhHHHHHHHHHHHHHHc
Confidence 12358999999999987644444 79999999986553 33 6677766666655
|
|
| >PLN02837 threonine-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00067 Score=74.17 Aligned_cols=122 Identities=17% Similarity=0.143 Sum_probs=81.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-CCCC-------CceeeeccccCCccccccccHHHH-----H
Q 012612 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLDFFEKPAFLTVSGQLN-----A 209 (460)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~-------~~F~v~~~~~~~~~~~L~~Spql~-----l 209 (460)
+.-.-.+++.+|++.+++...++||.||.||.|..... .+.+ +.|.+. +--+..+.|+.+.+-. +
T Consensus 242 ~~p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~--~~~~~~y~l~p~~~p~~~~~~~ 319 (614)
T PLN02837 242 WHPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQM--DIEDELYQLRPMNCPYHILVYK 319 (614)
T ss_pred EechHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhccccc--CCCCceEEECCCCcHHHHHHHh
Confidence 34567889999999999999999999999999998433 2211 234331 1112334555544332 2
Q ss_pred HHHhc--CC-CceEEEecccccCCCCCCC----CCCccceeeeeecCCCHHHHHHHHHHHHHHHHH
Q 012612 210 ETYAT--AL-SNVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFADLKDDMACATAYLQYVVR 268 (460)
Q Consensus 210 ~l~~~--g~-~rvfeI~~~FR~E~~~~~r----Hl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~ 268 (460)
..+.+ .+ =|++|+++|||+|.+ +.+ =.-||+|.|.+. |.+.+++.+..++++...-.
T Consensus 320 ~~~~SyrdLPlr~~~~~~~~R~E~~-g~~~GL~RvreF~~~e~h~-f~~~~q~~~e~~~~l~~~~~ 383 (614)
T PLN02837 320 RKLHSYRDLPIRVAELGTVYRYELS-GSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRGVLDLTEE 383 (614)
T ss_pred CccCChhHCCHhhEeecccccCCCC-CCCcCcccccceEECeEEE-EeCHHHHHHHHHHHHHHHHH
Confidence 11111 12 368999999999976 221 134899999996 99888888888887775543
|
|
| >PRK12420 histidyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0013 Score=68.71 Aligned_cols=119 Identities=18% Similarity=0.243 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-----CCC----CCceeeeccccCCccccccc--cHHHHHHHH
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-----EGA----GEQFCVTTLDFFEKPAFLTV--SGQLNAETY 212 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-----eg~----~~~F~v~~~~~~~~~~~L~~--Spql~l~l~ 212 (460)
+-.-..++..+.+.+++.|...||.||.||+|..... +.+ .+.|.+. +--|+.+.|+. .+++- +++
T Consensus 14 ~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~--D~~g~~l~LRpD~T~~ia-R~v 90 (423)
T PRK12420 14 LPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLT--DQGKRDLALRYDLTIPFA-KVV 90 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEe--cCCCceecccccccHHHH-HHH
Confidence 3445777889999999999999999999999977321 111 2345443 33466666663 22332 323
Q ss_pred hc--C--CC-ceEEEecccccCCCCCCCCCCccceeeeeecCCC----HHHHHHHHHHHHHHH
Q 012612 213 AT--A--LS-NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDMACATAYLQYV 266 (460)
Q Consensus 213 ~~--g--~~-rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~----~~~~~~~~e~li~~l 266 (460)
+. . .. |.|++++|||.|.... -+.-||+|+.+|.-..+ --|++.++-+.++.+
T Consensus 91 a~~~~~~~p~r~~y~g~vfR~~~~~~-gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~l 152 (423)
T PRK12420 91 AMNPNIRLPFKRYEIGKVFRDGPIKQ-GRFREFIQCDVDIVGVESVMAEAELMSMAFELFRRL 152 (423)
T ss_pred HhCcCCCCCeeEEEEcceECCCCCCC-CccceeEECCeeeECCCCCcccHHHHHHHHHHHHHC
Confidence 22 2 22 7899999999997643 45689999999986543 246666666555543
|
|
| >PLN02678 seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00071 Score=70.70 Aligned_cols=117 Identities=15% Similarity=0.218 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-CCCC-------CceeeeccccCCccccccccHHH-----HH-HH
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLDFFEKPAFLTVSGQL-----NA-ET 211 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~-------~~F~v~~~~~~~~~~~L~~Spql-----~l-~l 211 (460)
...+++..+++.+++++.++||.||.||.|..... ++++ +.|.+.. -+.+.||.-..|. |. +.
T Consensus 172 ~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~---~~~~~yLi~TaE~~l~~~h~~~~ 248 (448)
T PLN02678 172 AGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTG---EGDDKYLIATSEQPLCAYHRGDW 248 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCceecC---CCCceeeecccccccChHHhccc
Confidence 56889999999999999999999999999987433 3322 2343321 1123454433211 11 11
Q ss_pred H-hcCC-CceEEEecccccCCCCCC--C----CCCccceeeeeecCCCHHH--HHHHHHHHHHHH
Q 012612 212 Y-ATAL-SNVYTFGPTFRAENSNTS--R----HLAEFWMIEPELAFADLKD--DMACATAYLQYV 266 (460)
Q Consensus 212 ~-~~g~-~rvfeI~~~FR~E~~~~~--r----Hl~EFt~lE~e~~~~~~~~--~~~~~e~li~~l 266 (460)
+ -..+ =|++++++|||+|-+... + =.-+|+++|.. +|..-++ ..+..|+|+...
T Consensus 249 ~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f-~~~~pe~~~s~~~~e~~l~~~ 312 (448)
T PLN02678 249 IDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSPNGNESWEMHEEMLKNS 312 (448)
T ss_pred CCHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEE-EEECCCchhHHHHHHHHHHHH
Confidence 1 1112 379999999999975211 1 12489999995 4655555 666666666553
|
|
| >PRK04173 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0015 Score=68.93 Aligned_cols=48 Identities=23% Similarity=0.337 Sum_probs=36.8
Q ss_pred ceEEEecccccCCCCCCCCC----CccceeeeeecCCCHHHHHHHHHHHHHHHHH
Q 012612 218 NVYTFGPTFRAENSNTSRHL----AEFWMIEPELAFADLKDDMACATAYLQYVVR 268 (460)
Q Consensus 218 rvfeI~~~FR~E~~~~~rHl----~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~ 268 (460)
|+.|+|+|||+|-+ + +|- -||||.|.+ .|.+.+++.+.+..++..+..
T Consensus 188 r~aq~g~~~RnE~s-~-~~gL~RvReF~q~e~h-iF~~peq~~~e~~~~l~~~~~ 239 (456)
T PRK04173 188 GIAQIGKSFRNEIT-P-RNFIFRTREFEQMELE-FFVKPGTDNEWFAYWIELRKN 239 (456)
T ss_pred eeeEEchhHhCccC-C-CCCceeeceeeeeEEE-EEECcChHHHHHHHHHHHHHH
Confidence 69999999999976 4 442 799999997 588877776666666655443
|
|
| >PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0048 Score=63.41 Aligned_cols=109 Identities=21% Similarity=0.186 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecCCC------CC-CCCceeeeccccCCccccccc--cHHHHHHHHh---cCCCce
Q 012612 152 NALAYATHKFFQENGFIWISSPIITASDC------EG-AGEQFCVTTLDFFEKPAFLTV--SGQLNAETYA---TALSNV 219 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~------eg-~~~~F~v~~~~~~~~~~~L~~--Spql~l~l~~---~g~~rv 219 (460)
..+.+.+++.|.+.||.||+||++..... +. ..+.|.+. +--|+.+.|+. .+++-...+. ..--|+
T Consensus 8 ~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~--D~~G~~l~LRpD~T~piaR~~~~~~~~~p~R~ 85 (373)
T PRK12295 8 AAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTS--DENGEELCLRPDFTIPVCRRHIATAGGEPARY 85 (373)
T ss_pred HHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEE--CCCCCEEeeCCCCcHHHHHHHHHcCCCCCeEE
Confidence 47888999999999999999999976431 11 12345443 33355666662 2333322222 223489
Q ss_pred EEEecccccCCCCCCCCCCccceeeeeecCC-C-H---HHHHHHHHHHHHHH
Q 012612 220 YTFGPTFRAENSNTSRHLAEFWMIEPELAFA-D-L---KDDMACATAYLQYV 266 (460)
Q Consensus 220 feI~~~FR~E~~~~~rHl~EFt~lE~e~~~~-~-~---~~~~~~~e~li~~l 266 (460)
|++++|||.|.. | .-||+|+.+|.-.. + . -|++.++-+.+..+
T Consensus 86 ~Y~g~VfR~~~g---r-~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~l 133 (373)
T PRK12295 86 AYLGEVFRQRRD---R-ASEFLQAGIESFGRADPAAADAEVLALALEALAAL 133 (373)
T ss_pred EEEccEEECCCC---C-CCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHc
Confidence 999999999822 2 36999999999663 3 2 37777777766654
|
|
| >cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0062 Score=47.38 Aligned_cols=73 Identities=15% Similarity=0.332 Sum_probs=54.0
Q ss_pred EEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEE
Q 012612 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVL 111 (460)
Q Consensus 32 V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~i 111 (460)
|.|.|=|.+.+..++-+|+.|+|.. ..|.|++-+... ...... +..||-|.|.|.+.- + .+.+.+.++++++
T Consensus 1 v~v~GeVs~~~~~~GHvyfsLkD~~--a~i~cv~f~~~~-~~~~~~--l~~Gd~V~v~G~v~~-~--~G~~ql~v~~i~~ 72 (73)
T cd04487 1 VHIEGEVVQIKQTSGPTIFTLRDET--GTVWAAAFEEAG-VRAYPE--VEVGDIVRVTGEVEP-R--DGQLQIEVESLEV 72 (73)
T ss_pred CEEEEEEeccccCCCCEEEEEEcCC--EEEEEEEEchhc-cCCcCC--CCCCCEEEEEEEEec-C--CeEEEEEEeeEEE
Confidence 4678888876446667899999987 359998765432 111234 899999999999875 3 3479999999887
Q ss_pred E
Q 012612 112 V 112 (460)
Q Consensus 112 l 112 (460)
|
T Consensus 73 ~ 73 (73)
T cd04487 73 L 73 (73)
T ss_pred C
Confidence 5
|
RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function. |
| >cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.011 Score=46.23 Aligned_cols=73 Identities=19% Similarity=0.318 Sum_probs=54.3
Q ss_pred EEEEEEEeeecc-CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEE
Q 012612 32 IVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (460)
Q Consensus 32 V~v~GwV~~~R~-~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ 110 (460)
++|.|-|.++|. .++++|+.|.|.++ .+.+++-++. ++..+ ..|..|+.|.|+|++...+.+ +.+.+.++++.
T Consensus 2 ~~v~g~v~~i~~tk~g~~~~~L~D~~~--~i~~~~f~~~--~~~~~-~~l~~g~~v~v~g~v~~~~~~-~~~~l~v~~i~ 75 (78)
T cd04489 2 VWVEGEISNLKRPSSGHLYFTLKDEDA--SIRCVMWRSN--ARRLG-FPLEEGMEVLVRGKVSFYEPR-GGYQLIVEEIE 75 (78)
T ss_pred EEEEEEEecCEECCCcEEEEEEEeCCe--EEEEEEEcch--hhhCC-CCCCCCCEEEEEEEEEEECCC-CEEEEEEEEEE
Confidence 578899988885 45599999999985 5899887753 33332 249999999999999965322 35888887764
|
E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis. |
| >cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.023 Score=46.25 Aligned_cols=77 Identities=22% Similarity=0.277 Sum_probs=56.2
Q ss_pred EEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccch--hhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEE
Q 012612 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (460)
Q Consensus 32 V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~--~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i 109 (460)
|++.|+|.++...+.-.=+.|.|+||. |.+.+....... ..... +..|++|.|.|++..-+ +...|.+..+
T Consensus 2 v~~vG~V~~~~~~~~~~~~tL~D~TG~--I~~~~W~~~~~~~~~~~~~--~~~g~~v~v~G~v~~~~---g~~ql~i~~i 74 (95)
T cd04478 2 VTLVGVVRNVEEQSTNITYTIDDGTGT--IEVRQWLDDDNDDSSEVEP--IEEGTYVRVFGNLKSFQ---GKKSIMAFSI 74 (95)
T ss_pred EEEEEEEEeeeEcccEEEEEEECCCCc--EEEEEeCCCCCcccccccc--cccCCEEEEEEEEcccC---CeeEEEEEEE
Confidence 789999999998755555679999974 998887654211 12344 99999999999997654 2577777777
Q ss_pred EEEecC
Q 012612 110 VLVGKS 115 (460)
Q Consensus 110 ~ils~~ 115 (460)
..+...
T Consensus 75 ~~v~d~ 80 (95)
T cd04478 75 RPVTDF 80 (95)
T ss_pred EEeCCc
Confidence 755543
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam |
| >PF03590 AsnA: Aspartate-ammonia ligase; InterPro: IPR004618 Aspartate--ammonia ligase (asparagine synthetase) 6 | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.023 Score=53.65 Aligned_cols=123 Identities=11% Similarity=0.061 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhhhh-----CCceeecCceeecCCCC------CCCCceeeeccccCCccccccccHHHHHHHHh--cCC
Q 012612 150 VRNALAYATHKFFQE-----NGFIWISSPIITASDCE------GAGEQFCVTTLDFFEKPAFLTVSGQLNAETYA--TAL 216 (460)
Q Consensus 150 ~Rs~i~~~iR~ff~~-----~gF~EV~TPiL~~~~~e------g~~~~F~v~~~~~~~~~~~L~~Spql~l~l~~--~g~ 216 (460)
...+.|..|+++|.. .+.+.|..|+++....+ |...|-..+..+.-+..+-..+|-.-||++.. .+|
T Consensus 5 ~tq~aI~~iK~~F~~~L~~~LnL~rVsAPLfv~~~sGlNDnLnG~ErpVsF~~k~~~~~~~EIVhSLAKWKR~aL~~y~f 84 (244)
T PF03590_consen 5 ETQKAIKFIKDTFERELSKALNLTRVSAPLFVEKGSGLNDNLNGVERPVSFDIKDIPDETAEIVHSLAKWKRMALKRYGF 84 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-EEE----SEEETTSS-S--TTST----EE--TTSTT--EEE-S--TTHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHhCceEecCCeEEecCCCCcCCCCCeEeeEEEEccCCCCceeeeehhHHHHHHHHHHHcCC
Confidence 346677888888854 69999999999985442 22223222222333667778889889998543 366
Q ss_pred ---CceEEEecccc-cCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhc
Q 012612 217 ---SNVYTFGPTFR-AENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILD 272 (460)
Q Consensus 217 ---~rvfeI~~~FR-~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~ 272 (460)
+.+|+=+.+.| +|+.-+..|.--.-|.|||+....-+.-++.+.+.++.++..+..
T Consensus 85 ~~geGlyTdMnAiR~~de~ld~~HSiYVDQWDWEkvI~~~~Rnl~~Lk~tV~~Iy~aik~ 144 (244)
T PF03590_consen 85 PPGEGLYTDMNAIRPDDEELDNIHSIYVDQWDWEKVISKEDRNLEFLKETVRKIYKAIKE 144 (244)
T ss_dssp -TT-EEEEEEEEE-TT-SS--SS--SEEEEEEEEEE--TT--SHHHHHHHHHHHHHHHHH
T ss_pred CCCceEeecCceeecchhccCcceEEEecccCHhhhcCcccccHHHHHHHHHHHHHHHHH
Confidence 57999999999 886558999999999999999876667778888888887776654
|
3.1.1 from EC catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. This family represents one of two non-homologous forms of aspartate--ammonia ligase found in Escherichia coli. This type is also found in Haemophilus influenzae, Treponema pallidum and Lactobacillus delbrueckii, but appears to have a very limited distribution. The fact that the protein from the H. influenzae is more than 70% identical to that from the spirochete T. pallidum, but less than 65% identical to that from the closely related E. coli, strongly suggests lateral transfer.; GO: 0004071 aspartate-ammonia ligase activity, 0006529 asparagine biosynthetic process, 0005737 cytoplasm; PDB: 11AS_B 12AS_A. |
| >PLN02320 seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0077 Score=63.60 Aligned_cols=116 Identities=17% Similarity=0.205 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-CCCCC--------ceeeeccccCCccccccccHH-----HHH-HH
Q 012612 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAGE--------QFCVTTLDFFEKPAFLTVSGQ-----LNA-ET 211 (460)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~~--------~F~v~~~~~~~~~~~L~~Spq-----l~l-~l 211 (460)
..++...+++.++++..++||.||.||.|..... ++++. .|.+ -+.++||.-..| +|. +.
T Consensus 232 ~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~i-----e~ed~~Li~TaE~Pl~~~~~~~i 306 (502)
T PLN02320 232 AVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSI-----DGSDQCLIGTAEIPVGGIHMDSI 306 (502)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCCCcccccCceeEE-----CCCceEEeecccccccccccccc
Confidence 4557788999999999999999999999998544 33332 2222 145667743222 232 22
Q ss_pred H-hcCC-CceEEEecccccCCCCCCC------CCCccceeeeeecCCCHHHHHHHHHHHHHHHHH
Q 012612 212 Y-ATAL-SNVYTFGPTFRAENSNTSR------HLAEFWMIEPELAFADLKDDMACATAYLQYVVR 268 (460)
Q Consensus 212 ~-~~g~-~rvfeI~~~FR~E~~~~~r------Hl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~ 268 (460)
+ -..+ =|+.+.++|||.|-+...+ -.-+|++.|... |...+++.+..++|+..+-.
T Consensus 307 ls~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~i-f~~peqs~~e~e~ll~~~e~ 370 (502)
T PLN02320 307 LLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFV-ICRPEESESFHEELIQIEED 370 (502)
T ss_pred cCHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEE-EECHHHHHHHHHHHHHHHHH
Confidence 2 1122 3789999999999551110 123899999875 77888888888888776543
|
|
| >PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.032 Score=46.08 Aligned_cols=77 Identities=17% Similarity=0.281 Sum_probs=59.3
Q ss_pred CCEEEEEEEEeeecc-CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEe
Q 012612 29 GLMIVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (460)
Q Consensus 29 ~~~V~v~GwV~~~R~-~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~ 107 (460)
-+.|.|.|=|.+.+. .++-+|++|+|+. ..++|++-... +..+....++.|+-|.|.|.+.--+.. |.+.+.|.
T Consensus 21 ~~~vwV~GEIs~~~~~~~gh~YftLkD~~--a~i~~~~~~~~--~~~i~~~~l~~G~~V~v~g~~~~y~~~-G~~sl~v~ 95 (99)
T PF13742_consen 21 LPNVWVEGEISNLKRHSSGHVYFTLKDEE--ASISCVIFRSR--ARRIRGFDLKDGDKVLVRGRVSFYEPR-GSLSLIVE 95 (99)
T ss_pred cCCEEEEEEEeecEECCCceEEEEEEcCC--cEEEEEEEHHH--HhhCCCCCCCCCCEEEEEEEEEEECCC-cEEEEEEE
Confidence 367999999999998 6888999999987 57999988653 122220128999999999999775543 36888888
Q ss_pred EEE
Q 012612 108 KIV 110 (460)
Q Consensus 108 ~i~ 110 (460)
+|+
T Consensus 96 ~i~ 98 (99)
T PF13742_consen 96 DID 98 (99)
T ss_pred EeE
Confidence 774
|
|
| >COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.014 Score=60.28 Aligned_cols=115 Identities=17% Similarity=0.299 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCC-CCCC-------ceeeeccccCCccccccccHHHHH-HH-----
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCE-GAGE-------QFCVTTLDFFEKPAFLTVSGQLNA-ET----- 211 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~e-g~~~-------~F~v~~~~~~~~~~~L~~Spql~l-~l----- 211 (460)
.+.++--.+++.+=++..++||.|+.+|.|...... |.+. .|.+. +..+||....+.-+ .+
T Consensus 172 ~~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~-----~~~~~LipTaEvpl~~l~~~Ei 246 (429)
T COG0172 172 KGARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVE-----DPDLYLIPTAEVPLTNLHRDEI 246 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCCCCCcccceEec-----CCCEEEEecchhhhHHhhcccc
Confidence 356666677778888888999999999999985542 2222 23332 23678887776654 22
Q ss_pred Hh-cCCC-ceEEEecccccCCCCCC---C---CCCccceeeeeecCCCHHHHHHHHHHHHHHH
Q 012612 212 YA-TALS-NVYTFGPTFRAENSNTS---R---HLAEFWMIEPELAFADLKDDMACATAYLQYV 266 (460)
Q Consensus 212 ~~-~g~~-rvfeI~~~FR~E~~~~~---r---Hl~EFt~lE~e~~~~~~~~~~~~~e~li~~l 266 (460)
+. ..+. +++-.++|||.|..... | -.-+|.++|.-. |...++..+..|+|+...
T Consensus 247 l~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~-~~~Pe~S~~~~E~m~~~a 308 (429)
T COG0172 247 LDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVV-ITKPEESEEELEEMLGNA 308 (429)
T ss_pred cccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEE-EeCcchhHHHHHHHHHHH
Confidence 22 2233 57779999999954211 1 123899999865 677888877778777654
|
|
| >cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1) | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.052 Score=44.22 Aligned_cols=70 Identities=20% Similarity=0.352 Sum_probs=50.1
Q ss_pred EEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccc-------------------hhhHhccCCCCCcEEEEEeeEee
Q 012612 34 VAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-------------------YDQVKSGLITTGASIWIQGNVVP 94 (460)
Q Consensus 34 v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~-------------------~~~~~~~~l~~g~~V~V~G~v~~ 94 (460)
|.|+|.+++......-+.|.|+|| .|-|++...... .+.... +.+|++|.|.|++..
T Consensus 2 ivG~V~sv~~~~~~~~~tLdDgTG--~Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~G~vvrV~G~i~~ 77 (92)
T cd04483 2 ILGTVVSRRERETFYSFGVDDGTG--VVNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKV--LEIGDLLRVRGSIRT 77 (92)
T ss_pred eEEEEEEEEecCCeEEEEEecCCc--eEEEEEEcCcCcccccccccccccccccccccccccc--cCCCCEEEEEEEEec
Confidence 679999999875556668999997 499988764320 023345 999999999999986
Q ss_pred cCCCCceEEEEEeEEE
Q 012612 95 SQGSKQKVELKVNKIV 110 (460)
Q Consensus 95 ~~~~~~~~El~~~~i~ 110 (460)
=.. ...|.++.+.
T Consensus 78 frg---~~ql~i~~~~ 90 (92)
T cd04483 78 YRG---EREINASVVY 90 (92)
T ss_pred cCC---eeEEEEEEEE
Confidence 543 3556665543
|
Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization. |
| >PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.03 Score=54.99 Aligned_cols=105 Identities=15% Similarity=0.027 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC--CCC----CCceeeeccccCCcccccc--ccHHHHHHHHh---
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC--EGA----GEQFCVTTLDFFEKPAFLT--VSGQLNAETYA--- 213 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--eg~----~~~F~v~~~~~~~~~~~L~--~Spql~l~l~~--- 213 (460)
+..+..+.++.+.+++.|.+.||-||+||++-.... ..+ ...|..-. +.-|+.+-|| ..|++-. +.+
T Consensus 4 ~~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~-~~~Gr~laLRpD~T~~iAR-~~a~~~ 81 (272)
T PRK12294 4 SEQLIALKESETAFLKYFNKADYELVDFSVIEKLDWKQLNHEDLQQMGERSFW-QHEHQIYALRNDFTDQLLR-YYSMYP 81 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhccccchhhhheeeee-cCCCCEEEEcCCCCHHHHH-HHHhcC
Confidence 455677888999999999999999999999954322 111 11111100 1235666666 3455543 222
Q ss_pred cCCCceEEEecccccCCCCCCCCCCccceeeeeecCCCHHHHHHHH
Q 012612 214 TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACA 259 (460)
Q Consensus 214 ~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~ 259 (460)
.+..|.|.+++|||++. +|+|+-+|.-..+.+...+.+
T Consensus 82 ~~~~Rl~Y~g~VfR~~~--------~~~Q~GvEliG~~~~a~~e~l 119 (272)
T PRK12294 82 TAATKVAYAGLIIRNNE--------AAVQVGIENYAPSLANVQQSF 119 (272)
T ss_pred CCCceEEEeccEeccCC--------CcceeceEEECCCchhHHHHH
Confidence 24569999999999873 489999998764444444444
|
|
| >COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.013 Score=61.82 Aligned_cols=117 Identities=20% Similarity=0.187 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-------CC-CCCceeeeccccCCccccccccHHH-H--H-HHHhc
Q 012612 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-------EG-AGEQFCVTTLDFFEKPAFLTVSGQL-N--A-ETYAT 214 (460)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-------eg-~~~~F~v~~~~~~~~~~~L~~Spql-~--l-~l~~~ 214 (460)
-++++.+|.+.+|+-|++.|..||--|+|+++.- ++ +.++|.++.. -+.++.|+...|- . + +.-+.
T Consensus 46 g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v~dr--g~~~l~L~PTsEe~it~~~~~~i~ 123 (500)
T COG0442 46 GLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVKDR--GDRPLALRPTSEEVITDMFRKWIR 123 (500)
T ss_pred HHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcchhhEEEEcc--CCceeeeCCCcHHHHHHHHHHHhh
Confidence 5788899999999999999999999999998422 22 2357777644 3788888865543 2 1 22222
Q ss_pred C---C-CceEEEecccccCCC--CCCCCCCccceeeeeecCCCHHHHHHHHHHHHHH
Q 012612 215 A---L-SNVYTFGPTFRAENS--NTSRHLAEFWMIEPELAFADLKDDMACATAYLQY 265 (460)
Q Consensus 215 g---~-~rvfeI~~~FR~E~~--~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~ 265 (460)
. + =++|||..+||+|-- ..---.-||+|=|.|..+.|.+++.+..++++..
T Consensus 124 SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~~ 180 (500)
T COG0442 124 SYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLDA 180 (500)
T ss_pred hhhhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHHHHHHH
Confidence 2 2 369999999999943 0111256999999999999999998888887753
|
|
| >TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.027 Score=59.38 Aligned_cols=120 Identities=13% Similarity=0.069 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHhh-hhCCceeecCceeecCCC---CCCC-----Cceeeeccc----cC-----------------
Q 012612 146 AVARVRNALAYATHKFF-QENGFIWISSPIITASDC---EGAG-----EQFCVTTLD----FF----------------- 195 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff-~~~gF~EV~TPiL~~~~~---eg~~-----~~F~v~~~~----~~----------------- 195 (460)
..+++...+.+.+.+.+ .+.||.|+-+|.|.+... +|.. +.|.|++.. .+
T Consensus 221 ~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~ 300 (520)
T TIGR00415 221 KITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDK 300 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEEecCCCCcchhhcccccccccccccccc
Confidence 45667788888887655 556999999999998433 2222 234453210 00
Q ss_pred -----C-ccccccccHHHHH-HHHhc------CC-CceEEEe-cccccCCC--CCCCCCCccceeeeeecCCCHHHHHHH
Q 012612 196 -----E-KPAFLTVSGQLNA-ETYAT------AL-SNVYTFG-PTFRAENS--NTSRHLAEFWMIEPELAFADLKDDMAC 258 (460)
Q Consensus 196 -----~-~~~~L~~Spql~l-~l~~~------g~-~rvfeI~-~~FR~E~~--~~~rHl~EFt~lE~e~~~~~~~~~~~~ 258 (460)
. .+++|+.+.+... .+... .+ -++++++ +|||.|.. ++-.=.-||+|.|+-. +.+.++..+.
T Consensus 301 L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~-~~tpEea~e~ 379 (520)
T TIGR00415 301 LKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW-IAEPEETEEI 379 (520)
T ss_pred ccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-EeCHHHHHHH
Confidence 1 1566888777765 23222 22 3689955 79999974 2222245999999988 8899999998
Q ss_pred HHHHHHHH
Q 012612 259 ATAYLQYV 266 (460)
Q Consensus 259 ~e~li~~l 266 (460)
.++++...
T Consensus 380 ~e~mle~~ 387 (520)
T TIGR00415 380 RDKTLELA 387 (520)
T ss_pred HHHHHHHH
Confidence 88888653
|
The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases. |
| >COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.0076 Score=62.96 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhhhh--CCceeecCceeec
Q 012612 148 ARVRNALAYATHKFFQE--NGFIWISSPIITA 177 (460)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~--~gF~EV~TPiL~~ 177 (460)
..++..|+++.|++|.. .+++||+||+|.+
T Consensus 40 ~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p 71 (558)
T COG0423 40 VELKNNIKEAWRKSFVTEREDVVEIDTPIILP 71 (558)
T ss_pred HHHHHHHHHHHHHHHeeccCCeEEecccccCc
Confidence 45678899999999965 5899999999976
|
|
| >cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.05 Score=44.24 Aligned_cols=74 Identities=19% Similarity=0.410 Sum_probs=53.6
Q ss_pred EEEEEEeeecc--CCCeEEEEEEcCCCccceEEEEeCCccchhh-HhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEE
Q 012612 33 VVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (460)
Q Consensus 33 ~v~GwV~~~R~--~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~-~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i 109 (460)
.|.|.|.+.+. .++-+|+.|.|.++ .|.+++-+....+.. ... |..||-|.|.|.+..-. .|.++++
T Consensus 2 ~v~GeVs~~~~~~~sGH~yFtlkD~~~--~i~cv~f~~~g~~~~~~~~--l~~Gd~V~v~G~v~~y~------ql~ve~l 71 (91)
T cd04482 2 RVTGKVVEEPRTIEGGHVFFKISDGTG--EIDCAAYEPTKEFRDVVRL--LIPGDEVTVYGSVRPGT------TLNLEKL 71 (91)
T ss_pred EEEEEEeCCeecCCCCCEEEEEECCCc--EEEEEEECcccccccccCC--CCCCCEEEEEEEEecCC------EEEEEEE
Confidence 68999998865 46678889999874 588877654311112 234 99999999999986542 5888888
Q ss_pred EEEecCC
Q 012612 110 VLVGKSD 116 (460)
Q Consensus 110 ~ils~~~ 116 (460)
++++...
T Consensus 72 ~~~glg~ 78 (91)
T cd04482 72 RVIRLAR 78 (91)
T ss_pred EECCCcc
Confidence 8876643
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende |
| >PRK00960 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0087 Score=63.52 Aligned_cols=120 Identities=15% Similarity=0.120 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHHHHh-hhhCCceeecCceeecCCC---CCCC-----Cceeeecc----ccCC---------------
Q 012612 145 GAVARVRNALAYATHKF-FQENGFIWISSPIITASDC---EGAG-----EQFCVTTL----DFFE--------------- 196 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~f-f~~~gF~EV~TPiL~~~~~---eg~~-----~~F~v~~~----~~~~--------------- 196 (460)
..-.++...+.+.+++. ..+.||.||.||.|.+... .|.. +.|.|+.. ++++
T Consensus 220 p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~ 299 (517)
T PRK00960 220 PPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIE 299 (517)
T ss_pred ChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhcccccccccc
Confidence 45678888899999887 4666999999999987433 1222 24444321 0000
Q ss_pred --------ccccccc--cHHHHHH---HHhcCCC---ceEE-EecccccCCC--CCCCCCCccceeeeeecCCCHHHHHH
Q 012612 197 --------KPAFLTV--SGQLNAE---TYATALS---NVYT-FGPTFRAENS--NTSRHLAEFWMIEPELAFADLKDDMA 257 (460)
Q Consensus 197 --------~~~~L~~--Spql~l~---l~~~g~~---rvfe-I~~~FR~E~~--~~~rHl~EFt~lE~e~~~~~~~~~~~ 257 (460)
..+.|+. -|-+|.- -+...-+ |+|+ .|+|||+|.. ++-.=.-||+|.|+- .|.+.+++.+
T Consensus 300 ~~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~tpEqs~e 378 (517)
T PRK00960 300 KLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLGTPEQVEE 378 (517)
T ss_pred ccccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEeCHHHHHH
Confidence 0112221 2222211 1112222 7899 5599999942 111123599999998 6899999999
Q ss_pred HHHHHHHH
Q 012612 258 CATAYLQY 265 (460)
Q Consensus 258 ~~e~li~~ 265 (460)
..++++.+
T Consensus 379 e~e~ll~~ 386 (517)
T PRK00960 379 IRDELLKY 386 (517)
T ss_pred HHHHHHHH
Confidence 99999844
|
|
| >PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.085 Score=51.23 Aligned_cols=79 Identities=16% Similarity=0.272 Sum_probs=55.7
Q ss_pred CCCCEEEEEEEEeeeccC----CCeEEEEEEcCCCccceEEEEeCCccc--hhhHhccCCCCCcEEEEEeeEeecCCCCc
Q 012612 27 RVGLMIVVAGWVRTLRAQ----SSVTFIEVNDGSCLSNMQCVMTSDAEG--YDQVKSGLITTGASIWIQGNVVPSQGSKQ 100 (460)
Q Consensus 27 ~~~~~V~v~GwV~~~R~~----g~~~Fv~lrD~~~~~~iQvv~~~~~~~--~~~~~~~~l~~g~~V~V~G~v~~~~~~~~ 100 (460)
++=+.|+|.|.|.++... .+.+|+.|-|+||...|.|++..+... --.+.. + .|++|.|+|++. .+
T Consensus 64 hPI~~v~i~G~Vv~~~~~~~~~~~~~~l~iDD~Sg~~~i~~~~~~~~~~~~~l~~~~--~-~G~~V~VkG~vs-----r~ 135 (256)
T PF10451_consen 64 HPIRWVRIVGVVVGIDYKWIENEDRIILTIDDSSGANTIECKCSKSSYLSMGLPIND--L-IGKVVEVKGTVS-----RN 135 (256)
T ss_dssp EEE-EEEEEEEEEEEEEEE-BBTCEEEEEEE-SSCS-EEEEEEEHHHHHCCCHHCTT----TT-EEEEEEEEE-----SS
T ss_pred cccEEEEEEEEEEEEEEEeecccceEEEEEeCCCCceeEEEEEEcccccccCCCccC--C-CCcEEEEEEEEc-----cC
Confidence 344679999999999765 778999999999833689988864210 011334 6 999999999998 23
Q ss_pred eEEEEEeEEEEEe
Q 012612 101 KVELKVNKIVLVG 113 (460)
Q Consensus 101 ~~El~~~~i~ils 113 (460)
..+|.++.+.++.
T Consensus 136 ~~ql~ve~i~~~~ 148 (256)
T PF10451_consen 136 ERQLDVERIELVR 148 (256)
T ss_dssp SEEEEEEEEEEET
T ss_pred cEEEEEEEEEccC
Confidence 6888998888764
|
Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A. |
| >COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.022 Score=59.95 Aligned_cols=78 Identities=17% Similarity=0.311 Sum_probs=56.1
Q ss_pred CCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEE
Q 012612 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (460)
Q Consensus 27 ~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~ 106 (460)
+.|+.|.|.|-|..++.-++-+-+.|+|++|. +++.+-... +...... +++||+|.|.|.|..+... +.|.+
T Consensus 211 ~ig~tV~I~GeV~qikqT~GPTVFtltDetg~--i~aAAFe~a-GvRAyP~--IevGdiV~ViG~V~~r~g~---lQiE~ 282 (715)
T COG1107 211 MIGKTVRIEGEVTQIKQTSGPTVFTLTDETGA--IWAAAFEEA-GVRAYPE--IEVGDIVEVIGEVTRRDGR---LQIEI 282 (715)
T ss_pred hcCceEEEEEEEEEEEEcCCCEEEEEecCCCc--eehhhhccC-CcccCCC--CCCCceEEEEEEEeecCCc---EEEee
Confidence 78999999999999998765566689999976 887543211 1111234 9999999999999887543 55555
Q ss_pred eEEEEE
Q 012612 107 NKIVLV 112 (460)
Q Consensus 107 ~~i~il 112 (460)
..++.|
T Consensus 283 ~~me~L 288 (715)
T COG1107 283 EAMEKL 288 (715)
T ss_pred hhhHHh
Confidence 555544
|
|
| >PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif) | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.11 Score=43.11 Aligned_cols=82 Identities=15% Similarity=0.265 Sum_probs=51.5
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEE
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (460)
..++++++.+. ..+..|++.|.|.+.-..-+ ...+|.+| .|+|-++.+. |.- .. +++++-|.+.
T Consensus 21 ~~~TV~~a~~~------~Dd~~V~L~G~Iv~~l~~d~---Y~F~D~TG--~I~VeId~~~--w~g-~~--vt~~~~Vri~ 84 (103)
T PF04076_consen 21 TVTTVAQAKNA------KDDTPVTLEGNIVKQLGDDK---YLFRDATG--EIEVEIDDDV--WRG-QT--VTPDDKVRIS 84 (103)
T ss_dssp ----HHHHTTS-------SSEEEEEEEEEEEEEETTE---EEEEETTE--EEEEE--GGG--STT-------TTSEEEEE
T ss_pred CeEeHHHHhhC------cCCCeEEEEEEEEEEecCCE---EEEECCCC--cEEEEEChhh--cCC-cc--cCCCCEEEEE
Confidence 34677787653 56788999999876554433 34799996 4887776542 221 23 9999999999
Q ss_pred eeEeecCCCCceEEEEEeEEE
Q 012612 90 GNVVPSQGSKQKVELKVNKIV 110 (460)
Q Consensus 90 G~v~~~~~~~~~~El~~~~i~ 110 (460)
|+|.+.-. ..||.|..|+
T Consensus 85 GeVDk~~~---~~~IdV~~I~ 102 (103)
T PF04076_consen 85 GEVDKDWN---KTEIDVDRIE 102 (103)
T ss_dssp EEEEEETT---EEEEEEEEEE
T ss_pred EEEeCCCC---ceEEEEEEEE
Confidence 99996542 5888887764
|
Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A. |
| >cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.19 Score=39.63 Aligned_cols=67 Identities=18% Similarity=0.293 Sum_probs=48.6
Q ss_pred EEEEEEEeeecc--CCCeEEEEEEcCCCccceEEEEeCCccchh--hHhccCCCCCcEEEEEeeEeecCCCCceEEEEEe
Q 012612 32 IVVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYD--QVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (460)
Q Consensus 32 V~v~GwV~~~R~--~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~--~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~ 107 (460)
|+++|-|.++|. .|+. |+.|.|.+|. +.+++-++ .|+ ..+. .|..+.+|.|+|++... . + .+.+.
T Consensus 2 v~i~GiI~~v~~TK~g~~-~~~leD~~G~--~Ev~~F~~--~~~~~~~~~-~l~~d~~v~v~g~v~~~--~--~-~l~~~ 70 (79)
T cd04490 2 VSIIGMVNDVRSTKNGHR-IVELEDTTGR--ITVLLTKD--KEELFEEAE-DILPDEVIGVSGTVSKD--G--G-LIFAD 70 (79)
T ss_pred EEEEEEEeEEEEcCCCCE-EEEEECCCCE--EEEEEeCc--hhhhhhhhh-hccCCCEEEEEEEEecC--C--C-EEEEE
Confidence 678899988873 2566 9999999964 99988865 355 4432 48899999999999542 2 2 55555
Q ss_pred EE
Q 012612 108 KI 109 (460)
Q Consensus 108 ~i 109 (460)
++
T Consensus 71 ~I 72 (79)
T cd04490 71 EI 72 (79)
T ss_pred Ee
Confidence 43
|
PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain. |
| >cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.22 Score=37.17 Aligned_cols=67 Identities=18% Similarity=0.405 Sum_probs=49.0
Q ss_pred EEEEEeeeccC---CCeEEEEEEcCC-CccceEEEEeCCccchhhH-hccCCCCCcEEEEEeeEeecCCCCceEEEEEeE
Q 012612 34 VAGWVRTLRAQ---SSVTFIEVNDGS-CLSNMQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (460)
Q Consensus 34 v~GwV~~~R~~---g~~~Fv~lrD~~-~~~~iQvv~~~~~~~~~~~-~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~ 108 (460)
+.|.|.+++.. +.++++.|.|++ + .+.+++-.+. ++.. .. +..|+.|.|+|++.... +...+.+.+
T Consensus 2 v~g~v~~~~~~~~~~~~~~~~l~D~~~~--~i~~~~~~~~--~~~~~~~--~~~g~~v~v~g~v~~~~---~~~~l~~~~ 72 (75)
T cd03524 2 IVGIVVAVEEIRTEGKVLIFTLTDGTGG--TIRVTLFGEL--AEELENL--LKEGQVVYIKGKVKKFR---GRLQLIVES 72 (75)
T ss_pred eEEEEEeecccccCCeEEEEEEEcCCCC--EEEEEEEchH--HHHHHhh--ccCCCEEEEEEEEEecC---CeEEEEeee
Confidence 67888888764 378999999999 5 4888887642 2222 34 89999999999997642 346666654
Q ss_pred E
Q 012612 109 I 109 (460)
Q Consensus 109 i 109 (460)
+
T Consensus 73 ~ 73 (75)
T cd03524 73 I 73 (75)
T ss_pred e
Confidence 3
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco |
| >COG3111 Periplasmic protein with OB-fold [Function unknown] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.17 Score=42.84 Aligned_cols=83 Identities=16% Similarity=0.205 Sum_probs=58.3
Q ss_pred eeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEe
Q 012612 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90 (460)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G 90 (460)
.+++++..+- +.+..|++.|-|.+.- ++=.| ..||+|| .|+|-++... |.- .. +++.|-|.++|
T Consensus 45 ~~TV~~Ak~~------~Dda~V~l~GnIv~qi--~~D~y-~FrD~sG--eI~VeIdd~~--w~g-~t--v~P~dkV~I~G 108 (128)
T COG3111 45 VTTVDQAKTL------HDDAWVSLEGNIVRQI--GDDRY-VFRDASG--EINVDIDDKV--WNG-QT--VTPKDKVRIQG 108 (128)
T ss_pred eeEHHHhhcc------ccCCeEEEEeeEEEee--CCceE-EEEcCCc--cEEEEecccc--cCC-cc--cCcccEEEEEe
Confidence 4566665553 5678899999985433 33344 4899997 4999887653 111 23 99999999999
Q ss_pred eEeecCCCCceEEEEEeEEEEE
Q 012612 91 NVVPSQGSKQKVELKVNKIVLV 112 (460)
Q Consensus 91 ~v~~~~~~~~~~El~~~~i~il 112 (460)
.+-+.-. ..||.|+.|+.+
T Consensus 109 evDk~~~---~~eIdV~~I~k~ 127 (128)
T COG3111 109 EVDKDWN---SVEIDVKHIEKL 127 (128)
T ss_pred EEcCCCc---cceeEhhheEec
Confidence 9987522 588888888764
|
|
| >PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.15 Score=55.34 Aligned_cols=112 Identities=14% Similarity=0.120 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhhhhCCceeecCceeecCCC--CC---CC--CceeeeccccC-CccccccccHHHHH-HHHh---cCC--
Q 012612 151 RNALAYATHKFFQENGFIWISSPIITASDC--EG---AG--EQFCVTTLDFF-EKPAFLTVSGQLNA-ETYA---TAL-- 216 (460)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--eg---~~--~~F~v~~~~~~-~~~~~L~~Spql~l-~l~~---~g~-- 216 (460)
..++.+.+|++|...||.|+-|..+++..- +. .. +...+. |-. ..-.+||+|-=--+ +.+. .+.
T Consensus 361 ~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~~~~i~l~--NPls~e~svLRtsLlpgLL~~~~~N~~~~~~ 438 (552)
T PRK09616 361 IEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPEEDYVEVL--NPISEDYTVVRTSLLPSLLEFLSNNKHREYP 438 (552)
T ss_pred HHHHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCCCCCeEEEc--CCCccchheEeccchHHHHHHHHhccCCCCC
Confidence 456677899999999999999999987521 10 01 123332 222 23356777643332 4332 222
Q ss_pred CceEEEecccccCCCCCCCCCCccceeeeeecCC--CHHHHHHHHHHHHHH
Q 012612 217 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQY 265 (460)
Q Consensus 217 ~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~--~~~~~~~~~e~li~~ 265 (460)
-|+||||+||+.+.. +..|..|++++-+-++.. |+.++...+|.++..
T Consensus 439 ~~lFEiG~Vf~~~~~-~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~~ 488 (552)
T PRK09616 439 QKIFEIGDVVLIDES-TETGTRTERKLAAAIAHSEASFTEIKSVVQALLRE 488 (552)
T ss_pred eeEEEeeEEEecCCc-cccCcchhhEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 279999999998653 345778999999887764 788888888888754
|
|
| >PRK07373 DNA polymerase III subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.13 Score=54.10 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=58.9
Q ss_pred CCCEEEEEEEEeeeccC----C-CeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 012612 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (460)
Q Consensus 28 ~~~~V~v~GwV~~~R~~----g-~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (460)
.++.|+|+|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|+..+. .|..+.+|.|+|++.... +.+
T Consensus 279 ~~~~v~vaG~I~~ik~~~TKkG~~maf~~leD~tG~--ie~vvFp~--~y~~~~~-~l~~~~~v~v~G~v~~~~---~~~ 350 (449)
T PRK07373 279 EKTKVSAVVMLNEVKKIVTKKGDPMAFLQLEDLSGQ--SEAVVFPK--SYERISE-LLQVDARLIIWGKVDRRD---DQV 350 (449)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCC--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecC---CeE
Confidence 46789999999999753 2 4999999999975 99988764 3555542 499999999999997632 357
Q ss_pred EEEEeEEEEE
Q 012612 103 ELKVNKIVLV 112 (460)
Q Consensus 103 El~~~~i~il 112 (460)
.+.+.++.-+
T Consensus 351 ~liv~~i~~l 360 (449)
T PRK07373 351 QLIVEDAEPI 360 (449)
T ss_pred EEEEeEeecH
Confidence 7777776533
|
|
| >COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.035 Score=59.86 Aligned_cols=115 Identities=18% Similarity=0.267 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---CCCCCceeeeccccCCccccccccH--HHHHHHHh-------
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGAGEQFCVTTLDFFEKPAFLTVSG--QLNAETYA------- 213 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg~~~~F~v~~~~~~~~~~~L~~Sp--ql~l~l~~------- 213 (460)
.=..+|+.+.+.+|.-..+.||.||.||.+....- .|.. +.|....|+..+. ++.++-|.
T Consensus 218 kG~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~--------~~y~e~mf~~~~~~~~~~lKpmNCpgh~~i 289 (589)
T COG0441 218 KGATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHW--------DNYKEDMFLTESDDREYALKPMNCPGHILI 289 (589)
T ss_pred CcccHHHHHHHHHHHHHHhcCceEecCCeeeecccchhccch--------hhccccceeeccCChhheeeeccCHhHHHH
Confidence 34578999999999999999999999999987433 2222 2233444444443 22222111
Q ss_pred --cC-------CCceEEEecccccCCCCCCCC----CCccceeeeeecCCCHHHHHHHHHHHHHHHHHHH
Q 012612 214 --TA-------LSNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQYVVRYI 270 (460)
Q Consensus 214 --~g-------~~rvfeI~~~FR~E~~~~~rH----l~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~ 270 (460)
.. --|++|+|.|||.|.+ +.-| +-+|||=|.-. |+..+++.+.+.+.+..+..-.
T Consensus 290 fk~~~~SYR~LP~r~~E~g~v~R~E~S-Gal~GL~RvR~ftqdDaHi-fc~~dQi~~E~~~~~~~i~~v~ 357 (589)
T COG0441 290 FKSGLRSYRELPLRLAEFGYVYRYEKS-GALHGLMRVRGFTQDDAHI-FCTPDQIKDEFKGILELILEVY 357 (589)
T ss_pred HhcCCcceeccchhhhhcceeecccCc-chhhccccccceeecccce-eccHHHHHHHHHHHHHHHHHHH
Confidence 11 1488999999999987 3444 57899999765 6778888888877777665544
|
|
| >COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.17 Score=46.69 Aligned_cols=95 Identities=14% Similarity=0.224 Sum_probs=65.0
Q ss_pred cceeeeccccCCc-cC--CC----CCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccc-hhhHhccCC
Q 012612 9 RKKLKIVDVKGGP-NE--GL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLI 80 (460)
Q Consensus 9 ~~~~~i~~l~~~~-~~--~~----~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~-~~~~~~~~l 80 (460)
.+-++||+|.+.. +. ++ ...=..|.+.|||.++..+..-+|+.|.||+|. |-|-..+.... .++.+. +
T Consensus 39 LrpvTIKQIl~~~qd~~d~~f~vd~~Ev~~V~fVGvvrni~~~ttn~~~~iEDGTG~--Ievr~W~~~~~~~e~~~d--~ 114 (258)
T COG5235 39 LRPVTIKQILSCDQDETDSTFLVDSAEVTNVQFVGVVRNIKTSTTNSMFVIEDGTGS--IEVRFWPGNSYEEEQCKD--L 114 (258)
T ss_pred eeeeEHHHhhcccccccCCceeecceEEeeEEEEEEEEeeeecccceEEEEecCCce--EEEEecCCCchHHHhccc--c
Confidence 3458999998743 11 11 011134789999999999977788899999975 88877766533 233556 7
Q ss_pred CCCcEEEEEeeEeecCCCCceEEEEEeEEE
Q 012612 81 TTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (460)
Q Consensus 81 ~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ 110 (460)
..|-.|.|.|.++.=.. ...|....|.
T Consensus 115 ~~~~yvkV~G~lk~F~G---K~~I~~~~i~ 141 (258)
T COG5235 115 EEQNYVKVNGSLKTFNG---KRSISASHIS 141 (258)
T ss_pred ccccEEEEecceeeeCC---eeEEehhhee
Confidence 78889999999976433 3556554443
|
|
| >cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1) | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.62 Score=36.23 Aligned_cols=62 Identities=16% Similarity=0.325 Sum_probs=45.6
Q ss_pred CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecC
Q 012612 45 SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (460)
Q Consensus 45 g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~ 115 (460)
+.++++.|.|++|. +.+++-.+.. ..... +..|.+|.|.|++.... +..++.+.++..+...
T Consensus 18 ~~~~~~~l~D~tg~--i~~~~f~~~~--~~~~~--l~~g~~v~v~G~v~~~~---~~~~l~~~~i~~l~~~ 79 (83)
T cd04492 18 KPYLALTLQDKTGE--IEAKLWDASE--EDEEK--FKPGDIVHVKGRVEEYR---GRLQLKIQRIRLVTEE 79 (83)
T ss_pred CcEEEEEEEcCCCe--EEEEEcCCCh--hhHhh--CCCCCEEEEEEEEEEeC---CceeEEEEEEEECCcc
Confidence 45899999999974 8998876432 22334 99999999999997632 2588888888755543
|
Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases. |
| >TIGR00156 conserved hypothetical protein TIGR00156 | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.45 Score=40.97 Aligned_cols=81 Identities=15% Similarity=0.211 Sum_probs=56.8
Q ss_pred eeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEe
Q 012612 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90 (460)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G 90 (460)
-.++++..+- ..+..|++.|.|.+.-..-. ...+|++|. |+|-++.+. |.- .. ++++|-|.+.|
T Consensus 45 ~~tV~~a~~~------~Ddt~V~L~G~Iv~~l~~d~---Y~F~D~TG~--I~VeId~~~--w~G-~~--v~p~d~V~I~G 108 (126)
T TIGR00156 45 KMTVDFAKSM------HDGASVTLRGNIISHIGDDR---YVFRDKSGE--INVVIPAAV--WNG-RE--VQPKDMVNISG 108 (126)
T ss_pred eEeHHHHhhC------CCCCEEEEEEEEEEEeCCce---EEEECCCCC--EEEEECHHH--cCC-Cc--CCCCCEEEEEE
Confidence 4667776653 56788999999977654432 357999974 888876532 111 13 99999999999
Q ss_pred eEeecCCCCceEEEEEeEEE
Q 012612 91 NVVPSQGSKQKVELKVNKIV 110 (460)
Q Consensus 91 ~v~~~~~~~~~~El~~~~i~ 110 (460)
+|-+.-. ..||.|+.|+
T Consensus 109 eVDk~~~---~~~IdV~~I~ 125 (126)
T TIGR00156 109 SLDKKSA---PAEVDVTHIQ 125 (126)
T ss_pred EECCCCC---CeEEEEEEEE
Confidence 9986432 4777777765
|
As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae. |
| >PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.12 Score=45.50 Aligned_cols=83 Identities=16% Similarity=0.240 Sum_probs=49.8
Q ss_pred eeeeccccCCccC-----CCCCCCCEEEEEEEEeeecc-CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCc
Q 012612 11 KLKIVDVKGGPNE-----GLDRVGLMIVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGA 84 (460)
Q Consensus 11 ~~~i~~l~~~~~~-----~~~~~~~~V~v~GwV~~~R~-~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~ 84 (460)
..+..+|.+.|.+ ..++.|+.|.|.|.|.++.. .++-.++...+..+...++|.++.+........+ |+.||
T Consensus 44 ~~sa~~L~~~y~~N~~~A~~kY~gK~i~vtG~V~~I~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--l~~G~ 121 (144)
T PF12869_consen 44 SVSAEELYKDYKDNEVAADKKYKGKIIEVTGTVSSIDKGFGDNYVVLLGTENGFAGVQCYFSNDQEKRASVAK--LKKGQ 121 (144)
T ss_dssp EEEHHHHHHHHHH-HHHHHHHHTT-EEEEEEEEEEEEE-STT-EEEEEE-TT-S-S--EEEEEEGGGHHHHHH----TTS
T ss_pred eecHHHHHHHHHhCHHHHHhhcCCCEEEEEEEEEEEEEcCCCcEEEEccCCCCceeEEEEEccchhhhhhHhc--CCCCC
Confidence 3556666665521 23567999999999999976 3555666666655556799988876533334456 99999
Q ss_pred EEEEEeeEeec
Q 012612 85 SIWIQGNVVPS 95 (460)
Q Consensus 85 ~V~V~G~v~~~ 95 (460)
-|.|+|++.--
T Consensus 122 ~Vti~G~~~g~ 132 (144)
T PF12869_consen 122 KVTIKGICTGY 132 (144)
T ss_dssp EEEEEEE----
T ss_pred EEEEEEEEEee
Confidence 99999998654
|
; PDB: 3F1Z_I. |
| >cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE) | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.19 Score=38.93 Aligned_cols=72 Identities=21% Similarity=0.405 Sum_probs=48.8
Q ss_pred EEEEEeeecc----CC-CeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeE
Q 012612 34 VAGWVRTLRA----QS-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (460)
Q Consensus 34 v~GwV~~~R~----~g-~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~ 108 (460)
+.|.|.+++. .| .++++.|.|++|. +.+++-.+ .|+..+. .+..|..|.|.|++.... +..++.+.+
T Consensus 2 i~g~v~~~~~~~~k~g~~~~~~~l~D~tg~--~~~~~f~~--~~~~~~~-~l~~g~~v~v~G~v~~~~---~~~~l~~~~ 73 (84)
T cd04485 2 VAGLVTSVRRRRTKKGKRMAFVTLEDLTGS--IEVVVFPE--TYEKYRD-LLKEDALLLVEGKVERRD---GGLRLIAER 73 (84)
T ss_pred EEEEEEEeEEEEcCCCCEEEEEEEEeCCCe--EEEEECHH--HHHHHHH-HhcCCCEEEEEEEEEecC---CceEEEeec
Confidence 4566655432 23 4899999999974 88887753 3433321 399999999999998743 357888776
Q ss_pred EEEEe
Q 012612 109 IVLVG 113 (460)
Q Consensus 109 i~ils 113 (460)
+..+.
T Consensus 74 i~~~~ 78 (84)
T cd04485 74 IEDLE 78 (84)
T ss_pred cccHH
Confidence 65443
|
The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis. |
| >TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.051 Score=58.26 Aligned_cols=30 Identities=37% Similarity=0.534 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhhh-hCCceeecCceeec
Q 012612 148 ARVRNALAYATHKFFQ-ENGFIWISSPIITA 177 (460)
Q Consensus 148 ~~~Rs~i~~~iR~ff~-~~gF~EV~TPiL~~ 177 (460)
..++..|.+..|++|. +.+++||+||+|++
T Consensus 37 ~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~ 67 (551)
T TIGR00389 37 AVLKNNIKNAWRKFFIKNERVLEIDTPIITP 67 (551)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeeccccCC
Confidence 6678899999999994 77899999999976
|
This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases. |
| >KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.21 Score=49.93 Aligned_cols=121 Identities=25% Similarity=0.245 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHhhhhCCceeecCceeecCC-----C--CC-CCCceeeeccccCCccccccccHHHHH-HHHhcCCC
Q 012612 147 VARVRNALAYATHKFFQENGFIWISSPIITASD-----C--EG-AGEQFCVTTLDFFEKPAFLTVSGQLNA-ETYATALS 217 (460)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~-----~--eg-~~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~~g~~ 217 (460)
-+|.-.++...++.-|++-|=.+|.-|+|++.. + ++ +.+.|.+. +--++.+.|+..-|=-- .+|+.-..
T Consensus 51 g~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl~--Dr~gkq~cL~pThEE~iT~lmat~~~ 128 (457)
T KOG2324|consen 51 GLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRLH--DRKGKQMCLTPTHEEDITALMATYIP 128 (457)
T ss_pred hHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEee--ccCCCEeccCCchHHHHHHHHHhcCc
Confidence 466678899999999999999999999998732 2 11 34667653 56678888886665543 56665544
Q ss_pred --------ceEEEecccccCCC-CC--CCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHh
Q 012612 218 --------NVYTFGPTFRAENS-NT--SRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYIL 271 (460)
Q Consensus 218 --------rvfeI~~~FR~E~~-~~--~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~ 271 (460)
+||||++=||+|-- +. -| --||.|=|+|. |.+-++--..+-.++......+.
T Consensus 129 lsykqlPi~vYQigrKfRDElrpRfGLlR-gREFlMKDmYs-Fd~~~etA~qTy~~v~~aY~~iF 191 (457)
T KOG2324|consen 129 LSYKQLPIRVYQIGRKFRDELRPRFGLLR-GREFLMKDMYS-FDSDEETAQQTYQLVDQAYDRIF 191 (457)
T ss_pred cccccCcEEeeeechhhhhccCccccchh-hHHHHHhhhhc-ccCCHHHHHHHHHHHHHHHHHHH
Confidence 79999999999932 11 11 25999999997 65444444445555555555554
|
|
| >PRK14894 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.32 Score=51.38 Aligned_cols=102 Identities=20% Similarity=0.222 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhhh--hCCceeecCceeecCCC---CCCCCce-----------------------------------
Q 012612 148 ARVRNALAYATHKFFQ--ENGFIWISSPIITASDC---EGAGEQF----------------------------------- 187 (460)
Q Consensus 148 ~~~Rs~i~~~iR~ff~--~~gF~EV~TPiL~~~~~---eg~~~~F----------------------------------- 187 (460)
..++..|++.-|++|. ..+.+||+||+|++..- -|.-+.|
T Consensus 40 ~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~~aSGH~~~F~DpmV~CkkCk~ryRaD~LiikCP~CGs~dLTe~~ 119 (539)
T PRK14894 40 VELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVWKYSGHEETFNDPLVDCRDCKMRWRADHIQGVCPNCGSRDLTEPR 119 (539)
T ss_pred HHHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHeeeccCCCCCCCceeECCCCCccccCccceeeCCCCCCcCCCcce
Confidence 5567889999999884 56778999999865211 0111111
Q ss_pred ------eeeccccCC--ccccccc--cHHHH---HHHHhcCCC----ceEEEecccccCCCCCCCC----CCccceeeee
Q 012612 188 ------CVTTLDFFE--KPAFLTV--SGQLN---AETYATALS----NVYTFGPTFRAENSNTSRH----LAEFWMIEPE 246 (460)
Q Consensus 188 ------~v~~~~~~~--~~~~L~~--Spql~---l~l~~~g~~----rvfeI~~~FR~E~~~~~rH----l~EFt~lE~e 246 (460)
.+.--..-+ ..+|||. +--.+ +.++-..-. .+-|||++||||-+ .|. .-||+|+|+|
T Consensus 120 ~FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnFk~ll~~~~~klPFgiaQIGk~FRNEIs--Pr~~l~R~REF~q~EiE 197 (539)
T PRK14894 120 PFNMMFRTQIGPVADSDSFAYLRPETAQGIFVNFANVLATSARKLPFGIAQVGKAFRNEIN--PRNFLFRVREFEQMEIE 197 (539)
T ss_pred eccccceeccccCCCcCcceeeCcccchHHHHHHHHHHHhcCCCCCeeEEeeeccccCccC--CCCceeecccchhheEE
Confidence 100000011 4588883 22223 344433322 37899999999943 332 5799999999
Q ss_pred ecCCCH
Q 012612 247 LAFADL 252 (460)
Q Consensus 247 ~~~~~~ 252 (460)
. |.+-
T Consensus 198 ~-Fv~P 202 (539)
T PRK14894 198 Y-FVMP 202 (539)
T ss_pred E-EeCC
Confidence 7 5543
|
|
| >PRK14699 replication factor A; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.56 Score=49.83 Aligned_cols=96 Identities=16% Similarity=0.204 Sum_probs=66.2
Q ss_pred eeeccccCCccCCCCCCCCEEEEEEEEeeec-------cC---CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCC
Q 012612 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR-------AQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (460)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R-------~~---g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~ 81 (460)
.+|+||.. ..+.|++.|+|.++- .. |+++=+.|-|.||. |.+++..+... .+..+.|.
T Consensus 58 ~kI~di~~--------~~~~v~i~~rVl~i~~~r~f~r~dG~~g~v~~~~iaDeTG~--ir~tlW~~~a~--~~~~g~l~ 125 (484)
T PRK14699 58 VKIENITP--------ESGPVNFIARVVSVFDTKEFTRNDGTIGRVGNLIVGDETGK--IKLTLWDNMAD--LIKAGKIK 125 (484)
T ss_pred ccHhHccC--------CCceEEEEEEEEEecCceEEecCCCCceEEEEEEEecCCCe--EEEEEecCccc--hhhhcCCC
Confidence 46777743 346799999999983 22 56666788999974 99999876432 12312299
Q ss_pred CCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCC
Q 012612 82 TGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122 (460)
Q Consensus 82 ~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~ 122 (460)
+||+|.|.|.++.-. +..||.+.....+.++....+.+
T Consensus 126 ~GDvv~I~~~~r~~~---~g~el~~~~~~~i~~~~~~i~v~ 163 (484)
T PRK14699 126 AGQTLQISGYAKQGY---SGVEVNIGNNGVLTESEEEIDVA 163 (484)
T ss_pred CCCEEEEcceeccCC---CCceEEeCCCceeeccCcccccC
Confidence 999999999754322 24788888777777765445543
|
|
| >PRK10053 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.69 Score=40.05 Aligned_cols=81 Identities=12% Similarity=0.199 Sum_probs=56.3
Q ss_pred eeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEe
Q 012612 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90 (460)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G 90 (460)
.+++++..+- ..+..|++.|.|.+.=..- . ...+|++|. |+|-++.+. | ...-++++|-|.+.|
T Consensus 49 ~~tV~~a~~~------~Dd~~V~L~G~Iv~~lg~d--~-Y~F~D~tG~--I~VeID~~~--w---~G~~v~p~~kV~I~G 112 (130)
T PRK10053 49 KMTVEQAKTM------HDGATVSLRGNLIDHKGDD--R-YVFRDKSGE--INVIIPAAV--F---DGREVQPDQMINING 112 (130)
T ss_pred eEEHHHhhcC------cCCCeEEEEEEEEEEeCCc--e-EEEECCCCc--EEEEeCHHH--c---CCCcCCCCCEEEEEE
Confidence 3567776553 5678899999996554333 2 347999974 888876542 1 111299999999999
Q ss_pred eEeecCCCCceEEEEEeEEE
Q 012612 91 NVVPSQGSKQKVELKVNKIV 110 (460)
Q Consensus 91 ~v~~~~~~~~~~El~~~~i~ 110 (460)
.|-+.-. ..||.|+.|+
T Consensus 113 evDk~~~---~~~IdV~~i~ 129 (130)
T PRK10053 113 SLDKKSA---PPVVRVTHLQ 129 (130)
T ss_pred EECCCCC---CeEEEEEEEe
Confidence 9987532 4788888775
|
|
| >PRK05672 dnaE2 error-prone DNA polymerase; Validated | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.36 Score=56.05 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=60.2
Q ss_pred CCCEEEEEEEEeeeccC---CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEE
Q 012612 28 VGLMIVVAGWVRTLRAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVEL 104 (460)
Q Consensus 28 ~~~~V~v~GwV~~~R~~---g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El 104 (460)
.+..|+|+|.|..++.. ++++|+.|.|.+|. +.+++-++. |+..+. .|..|.++.|+|++... .+.+.+
T Consensus 952 ~~~~v~v~g~i~~~~~~~TkkGmaf~~leD~~g~--~e~~ifp~~--~~~~~~-~l~~~~~~~v~g~v~~~---~~~~~~ 1023 (1046)
T PRK05672 952 DGRRVRVAGVVTHRQRPGTASGVTFLTLEDETGM--VNVVVWPGL--WERQRR-EALGARLLLVRGRVQNA---EGVRHL 1023 (1046)
T ss_pred CCCEEEEEEEEEEEEEecCCCceEEEEEecCCCC--EEEEECHHH--HHHHHH-HhccCCEEEEEEEEEec---CCeEEE
Confidence 46789999999988652 34999999999975 999887652 555442 48999999999999864 235788
Q ss_pred EEeEEEEEec
Q 012612 105 KVNKIVLVGK 114 (460)
Q Consensus 105 ~~~~i~ils~ 114 (460)
.++++.-+..
T Consensus 1024 ~~~~i~~~~~ 1033 (1046)
T PRK05672 1024 VADRLEDLSP 1033 (1046)
T ss_pred EEeeeechHH
Confidence 8887765544
|
|
| >PRK15491 replication factor A; Provisional | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.58 Score=48.11 Aligned_cols=93 Identities=22% Similarity=0.284 Sum_probs=66.2
Q ss_pred eeeeccccCCccCCCCCCCCEEEEEEEEeee-------ccC---CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCC
Q 012612 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL-------RAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI 80 (460)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~-------R~~---g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l 80 (460)
-++|+||... ...|+|.|||.++ |.. |++.=+.|-|.+| ++++++..+..+ .+..+.|
T Consensus 57 ~~kI~dL~~~--------~~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~DeTG--~ir~tlW~~~a~--~~~~~~l 124 (374)
T PRK15491 57 TTKIADINES--------SSNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVADETG--SIRLTLWDDLAD--LIKTGDI 124 (374)
T ss_pred cccHHHCCCC--------CCceEEEEEEeeccCCeeeecCCCCceEEEEEEEEcCCC--eEEEEEECchhh--hhccCCc
Confidence 3578888543 3669999999988 222 4666678999996 499999876432 1221239
Q ss_pred CCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCC
Q 012612 81 TTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS 118 (460)
Q Consensus 81 ~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~ 118 (460)
..|+++.|.|.++..-. .+||.+..-..+.+|...
T Consensus 125 e~G~v~~I~~~~~~~y~---g~Ei~i~~~~~i~~~~~~ 159 (374)
T PRK15491 125 EVGKSLNISGYAKEGYS---GIEVNIGRYGGISESDEN 159 (374)
T ss_pred CCCCEEEEeeeeccCcc---cEEEEeCCCceeeecccc
Confidence 99999999998554332 389999888888888643
|
|
| >PRK07374 dnaE DNA polymerase III subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.36 Score=56.47 Aligned_cols=77 Identities=9% Similarity=0.215 Sum_probs=58.7
Q ss_pred CCCEEEEEEEEeeeccC----C-CeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 012612 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (460)
Q Consensus 28 ~~~~V~v~GwV~~~R~~----g-~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (460)
.+..|+|+|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|+..+. .|..|.+|.|+|++.... +.+
T Consensus 999 ~~~~v~v~g~i~~~k~~~Tk~G~~maf~~leD~tg~--~e~vvFp~--~y~~~~~-~l~~~~~~~v~g~v~~~~---~~~ 1070 (1170)
T PRK07374 999 DKAKVSAIAMIPEMKQVTTRKGDRMAILQLEDLTGS--CEAVVFPK--SYERLSD-HLMTDTRLLVWAKVDRRD---DRV 1070 (1170)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCC--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecC---CeE
Confidence 46789999999998752 2 4999999999975 99988764 3555542 499999999999997642 357
Q ss_pred EEEEeEEEEE
Q 012612 103 ELKVNKIVLV 112 (460)
Q Consensus 103 El~~~~i~il 112 (460)
.+.+.++.-+
T Consensus 1071 ~~~~~~i~~l 1080 (1170)
T PRK07374 1071 QLIIDDCREI 1080 (1170)
T ss_pred EEEEeeeecH
Confidence 7777776544
|
|
| >cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14) | Back alignment and domain information |
|---|
Probab=92.47 E-value=1.2 Score=36.82 Aligned_cols=67 Identities=15% Similarity=0.286 Sum_probs=47.5
Q ss_pred CCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEE
Q 012612 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (460)
Q Consensus 27 ~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~ 106 (460)
+.|+.|++-|+|.+.+.. . +.+.+..| +.++|.++... . +..+-.|.|.|+|.. ...|.+
T Consensus 13 f~gk~V~ivGkV~~~~~~---~-~~~~~~Dg-~~v~v~l~~~~-------~--~~~~~~vEViG~V~~------~~~I~~ 72 (101)
T cd04479 13 FVGKTVRIVGKVEKVDGD---S-LTLISSDG-VNVTVELNRPL-------D--LPISGYVEVIGKVSP------DLTIRV 72 (101)
T ss_pred hCCCEEEEEEEEEEecCC---e-EEEEcCCC-CEEEEEeCCCC-------C--cccCCEEEEEEEECC------CCeEEE
Confidence 689999999999999854 2 34555444 35888887642 3 778889999999964 345566
Q ss_pred eEEEEEe
Q 012612 107 NKIVLVG 113 (460)
Q Consensus 107 ~~i~ils 113 (460)
..+.-++
T Consensus 73 ~~~~~~g 79 (101)
T cd04479 73 LSYIDFG 79 (101)
T ss_pred EEEEECC
Confidence 5554444
|
RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer. |
| >PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.64 Score=38.97 Aligned_cols=58 Identities=14% Similarity=0.235 Sum_probs=38.4
Q ss_pred CCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecC
Q 012612 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (460)
Q Consensus 27 ~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~ 96 (460)
+.|+.|++-|+|.+....|+.+-+.-.|+. .++|.+.... . +..+..|.|.|+|....
T Consensus 16 ~~gk~VrivGkv~~~~~~g~~~~l~~~d~~---~V~v~l~~~~-------~--~~~~~~vEviG~V~~~~ 73 (109)
T PF08661_consen 16 FVGKTVRIVGKVESVDPDGGSATLSTSDGG---QVTVSLNPPS-------D--EELSKYVEVIGKVNDDG 73 (109)
T ss_dssp GTTSEEEEEEEEEEE-TTSSEEEEE-TTS----EEEEEESS---------S--S---SEEEEEEEE-TTS
T ss_pred hCCCeEEEEEEEeeEcCCCCEEEEEcCCCC---EEEEEeCCCC-------C--CCCCCEEEEEEEEcCCC
Confidence 689999999999999977775544445653 5787776542 2 66789999999997643
|
; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D. |
| >PRK06826 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.7 Score=54.15 Aligned_cols=80 Identities=15% Similarity=0.309 Sum_probs=59.8
Q ss_pred CCCEEEEEEEEeeeccC----C-CeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 012612 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (460)
Q Consensus 28 ~~~~V~v~GwV~~~R~~----g-~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (460)
.++.|+|+|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|+..+. .|..|.+|.|+|++..... +.+
T Consensus 990 ~~~~v~v~g~i~~~~~~~tk~G~~maf~~leD~~g~--~e~~vfp~--~~~~~~~-~l~~~~~~~v~g~v~~~~~--~~~ 1062 (1151)
T PRK06826 990 DGDKVIIGGIITEVKRKTTRNNEMMAFLTLEDLYGT--VEVIVFPK--VYEKYRS-LLNEDNIVLIKGRVSLRED--EEP 1062 (1151)
T ss_pred CCcEEEEEEEEEEeEeeccCCCCeEEEEEEEECCCc--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecCC--Cce
Confidence 46789999999998752 3 3999999999975 99988764 3555442 4999999999999975432 247
Q ss_pred EEEEeEEEEEec
Q 012612 103 ELKVNKIVLVGK 114 (460)
Q Consensus 103 El~~~~i~ils~ 114 (460)
.+.+.++.-+..
T Consensus 1063 ~~~~~~~~~l~~ 1074 (1151)
T PRK06826 1063 KLICEEIEPLVI 1074 (1151)
T ss_pred EEEEeeeecHhh
Confidence 778877764443
|
|
| >KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.36 Score=49.49 Aligned_cols=101 Identities=17% Similarity=0.198 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceee------cCCCCCCCCceeeeccccCCcccc----ccccHHHHHHH-Hhc
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIIT------ASDCEGAGEQFCVTTLDFFEKPAF----LTVSGQLNAET-YAT 214 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~------~~~~eg~~~~F~v~~~~~~~~~~~----L~~Spql~l~l-~~~ 214 (460)
+-+.+|..|.+.|.+-|...|..+|+||++- .-.+|...-.+-.. +--|+-.. |+++=.-|+-+ -+.
T Consensus 72 ~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEdskLiYdlk--DQGGEl~SLRYDLTVPfARylAmNki~ 149 (518)
T KOG1936|consen 72 EQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDSKLIYDLK--DQGGELCSLRYDLTVPFARYLAMNKIT 149 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhcccccceeEehh--hcCCcEEEeecccccHHHHHHHHcccc
Confidence 3578899999999999999999999999754 33333332122111 22232222 33332333311 122
Q ss_pred CCCceEEEecccccCCCC-CCCCCCccceeeeeecC
Q 012612 215 ALSNVYTFGPTFRAENSN-TSRHLAEFWMIEPELAF 249 (460)
Q Consensus 215 g~~rvfeI~~~FR~E~~~-~~rHl~EFt~lE~e~~~ 249 (460)
.+. -|+||++||.+... |.--.-||+|+|+-.+.
T Consensus 150 sik-Ry~iAkVyRRd~P~mtrGR~REFYQcDFDIAG 184 (518)
T KOG1936|consen 150 SIK-RYHIAKVYRRDQPAMTRGRYREFYQCDFDIAG 184 (518)
T ss_pred cce-eeeEEEEEeccCchhhchhhhhhhccCccccc
Confidence 233 49999999987552 11134699999998874
|
|
| >cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.6 Score=43.44 Aligned_cols=107 Identities=17% Similarity=0.169 Sum_probs=59.4
Q ss_pred HHHHHHHHhhhhCCceeecCceeecC-CCC----CCCCceeeeccccC-CccccccccHHHHH-HHH----hcCC--Cce
Q 012612 153 ALAYATHKFFQENGFIWISSPIITAS-DCE----GAGEQFCVTTLDFF-EKPAFLTVSGQLNA-ETY----ATAL--SNV 219 (460)
Q Consensus 153 ~i~~~iR~ff~~~gF~EV~TPiL~~~-~~e----g~~~~F~v~~~~~~-~~~~~L~~Spql~l-~l~----~~g~--~rv 219 (460)
.+.+.+|++|...||.|+-|..+++. ... ...++..+. |-. ..-.+||+|-=--+ +.+ ..+. -|+
T Consensus 4 ~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~~~~~~~~~i~l~--NPis~e~~~lR~sLlp~LL~~~~~N~~~~~~~~~l 81 (198)
T cd00769 4 KLERKLRRLLAGLGFQEVITYSLTSPEEAELFDGGLDEAVELS--NPLSEEYSVLRTSLLPGLLDALARNLNRKNKPLRL 81 (198)
T ss_pred HHHHHHHHHHHHCCCceeecccCCCHHHHHhccCCCCCeEEEc--CCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCEeE
Confidence 45677899999999999999999875 211 111222222 211 12234555432222 221 1232 379
Q ss_pred EEEecccccCCCCCCCCCCccceeeeeecC-------------CCHHHHHHHHHHHHHH
Q 012612 220 YTFGPTFRAENSNTSRHLAEFWMIEPELAF-------------ADLKDDMACATAYLQY 265 (460)
Q Consensus 220 feI~~~FR~E~~~~~rHl~EFt~lE~e~~~-------------~~~~~~~~~~e~li~~ 265 (460)
||||+||..+.. +..|.+.+=+-.+. .|+.++...+|.++..
T Consensus 82 FEiG~vf~~~~~----~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~ 136 (198)
T cd00769 82 FEIGRVFLKDED----GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRA 136 (198)
T ss_pred EEeEeEEecCCC----CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHH
Confidence 999999976431 22455555433332 2666777777776654
|
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain. |
| >PRK05673 dnaE DNA polymerase III subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.45 Score=55.65 Aligned_cols=79 Identities=16% Similarity=0.335 Sum_probs=60.2
Q ss_pred CCCEEEEEEEEeeeccC----C-CeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 012612 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (460)
Q Consensus 28 ~~~~V~v~GwV~~~R~~----g-~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (460)
.++.|++.|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|+..+. .|..|++|.|+|++.... +..
T Consensus 976 ~g~~V~v~G~I~~vk~~~TKkG~~mafltLeD~TG~--iEvviFp~--~ye~~~~-~L~~g~iV~V~GkVe~~~---~~~ 1047 (1135)
T PRK05673 976 GGSVVTVAGLVVSVRRRVTKRGNKMAIVTLEDLSGR--IEVMLFSE--ALEKYRD-LLEEDRIVVVKGQVSFDD---GGL 1047 (1135)
T ss_pred cCceEEEEEEEEEEEecccCCCCeEEEEEEEeCCCc--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecC---CeE
Confidence 46789999999999762 3 4999999999974 99988764 3555432 399999999999997642 357
Q ss_pred EEEEeEEEEEec
Q 012612 103 ELKVNKIVLVGK 114 (460)
Q Consensus 103 El~~~~i~ils~ 114 (460)
.+.++++.-+.+
T Consensus 1048 qlii~~I~~L~~ 1059 (1135)
T PRK05673 1048 RLTAREVMDLEE 1059 (1135)
T ss_pred EEEEeecccHHH
Confidence 788877765544
|
|
| >COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.97 E-value=1 Score=41.28 Aligned_cols=76 Identities=25% Similarity=0.369 Sum_probs=53.8
Q ss_pred CCCCEEEEEEEEeeecc--CCCeEEEEEEcCCCccceEEEEeCCccchhhHhcc--CCCCCcEEEEEeeEeecCCCCceE
Q 012612 27 RVGLMIVVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSG--LITTGASIWIQGNVVPSQGSKQKV 102 (460)
Q Consensus 27 ~~~~~V~v~GwV~~~R~--~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~--~l~~g~~V~V~G~v~~~~~~~~~~ 102 (460)
...+.|+|.|-|.+.+. ++++.++.|.|++| +|-+++..+....-.++.+ -+..|++|+|+|.+..-+.. .
T Consensus 49 ~l~e~v~vkg~V~~~~n~~~~gi~~l~lndgtG--ti~vva~~~tee~l~~n~~~p~~~eGe~veVtGrv~~yrG~---~ 123 (204)
T COG4085 49 RLNEEVTVKGEVTADQNAIGGGIESLVLNDGTG--TITVVASRSTEETLELNEGMPVTVEGEIVEVTGRVEEYRGS---S 123 (204)
T ss_pred eeeccceeeeEEEeeecccccceEEEEEECCCC--cEEEEEecChhHhHhhcCCCCccccCcEEEEEEEEEEeCCC---c
Confidence 45677889999999984 48899999999996 4998887654211111100 16689999999999876543 5
Q ss_pred EEEEe
Q 012612 103 ELKVN 107 (460)
Q Consensus 103 El~~~ 107 (460)
||.+.
T Consensus 124 eVkvn 128 (204)
T COG4085 124 EVKVN 128 (204)
T ss_pred eeecc
Confidence 55543
|
|
| >PRK06920 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.94 Score=52.78 Aligned_cols=78 Identities=15% Similarity=0.258 Sum_probs=58.6
Q ss_pred CCCEEEEEEEEeeeccC-----CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 012612 28 VGLMIVVAGWVRTLRAQ-----SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (460)
Q Consensus 28 ~~~~V~v~GwV~~~R~~-----g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (460)
.++.|+|+|.|.++|.. +.++|+.|.|.+|. +.+++-++ .|+..+. .|..|.+|.|+|++... .+..
T Consensus 942 ~~~~v~v~g~i~~~~~~~tk~g~~maf~~leD~tg~--~e~~vFp~--~y~~~~~-~l~~~~~~~v~G~v~~~---~~~~ 1013 (1107)
T PRK06920 942 KKKVQRAIVYITSVKVIRTKKGQKMAFITFCDQNDE--MEAVVFPE--TYIHFSD-KLQEGAIVLVDGTIELR---NHKL 1013 (1107)
T ss_pred CCCEEEEEEEEEEeEeecCCCCCeEEEEEEeeCCCc--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEec---CCcE
Confidence 46689999999998652 35999999999975 99988764 3555442 49999999999999764 2356
Q ss_pred EEEEeEEEEEe
Q 012612 103 ELKVNKIVLVG 113 (460)
Q Consensus 103 El~~~~i~ils 113 (460)
.+.+.++.-+.
T Consensus 1014 ~~~~~~i~~l~ 1024 (1107)
T PRK06920 1014 QWIVNGLYPLE 1024 (1107)
T ss_pred EEEEeecccHH
Confidence 77777765443
|
|
| >PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria | Back alignment and domain information |
|---|
Probab=91.15 E-value=3.8 Score=35.57 Aligned_cols=85 Identities=21% Similarity=0.402 Sum_probs=51.9
Q ss_pred eeeccccCCccCCCCCCCCEEEEEEEEe--eecc---CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEE
Q 012612 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVR--TLRA---QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASI 86 (460)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~--~~R~---~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V 86 (460)
.+..|+.... ...++.|+|.|+|. ++.. ...+.|. |.|+. +.+.|+.....++ +.+.|..|
T Consensus 37 ~t~se~~~~~----~~~~~~vrv~G~V~~gSv~~~~~~~~~~F~-i~D~~--~~i~V~Y~G~~Pd-------~F~eg~~V 102 (131)
T PF03100_consen 37 LTPSELAAEP----QKVGRKVRVGGLVVEGSVEYDPDGNTLTFT-ITDGG--KEIPVVYTGPLPD-------LFREGQGV 102 (131)
T ss_dssp E-TTTTTTTS----T-TTSEEEEEEEEECTTEEE-TTSSEEEEE-EE-SS---EEEEEEES--CT-------T--TTSEE
T ss_pred cCHHHHhhcc----ccCCceEEEeeEEccCCEEEcCCCCEEEEE-EEECC--cEEEEEECCCCCc-------cccCCCeE
Confidence 4566676541 24789999999998 5543 3668875 78886 5699988765432 27779999
Q ss_pred EEEeeEeecCCCCceEEEEEeEEEEEecCCCC
Q 012612 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS 118 (460)
Q Consensus 87 ~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~ 118 (460)
.|+|+.... + ..+++ +||.||+..
T Consensus 103 Vv~G~~~~~--g----~F~A~--~lL~Kcpsk 126 (131)
T PF03100_consen 103 VVEGRLGED--G----VFEAT--ELLAKCPSK 126 (131)
T ss_dssp EEEEEECCT--S----EEEEE--EEEETS---
T ss_pred EEEEEECCC--C----EEEEE--EEEeCCCCC
Confidence 999998331 1 23344 688898643
|
Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A. |
| >COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.53 Score=48.34 Aligned_cols=100 Identities=20% Similarity=0.177 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHhhhhCCceeecCceeecCCC---C---C-CCCceeeeccccCCccccccc--cHHHHH---HHHhcC
Q 012612 148 ARVRNALAYATHKFFQENGFIWISSPIITASDC---E---G-AGEQFCVTTLDFFEKPAFLTV--SGQLNA---ETYATA 215 (460)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---e---g-~~~~F~v~~~~~~~~~~~L~~--Spql~l---~l~~~g 215 (460)
.+....|.+.+++.|...||..|+||+|...++ + . -...|.+. +-.+..+.||. .++.-. ..+.+.
T Consensus 17 ~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~--d~~g~~l~LRpD~T~pVaR~~~~~~~~~ 94 (390)
T COG3705 17 ARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLE--DETGGRLGLRPDFTIPVARIHATLLAGT 94 (390)
T ss_pred HhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEe--cCCCCeEEecccccHHHHHHHHHhcCCC
Confidence 455677888889999999999999999998655 2 1 12477765 55666677772 444443 234455
Q ss_pred CCceEEEecccccCCCCCCCCCCccceeeeeecCC
Q 012612 216 LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 250 (460)
Q Consensus 216 ~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~ 250 (460)
-.|+...|++||+.+....+ ..||+|.=+|.=..
T Consensus 95 P~Rl~Y~G~Vfr~~~~~~g~-~~Ef~QaGiEllG~ 128 (390)
T COG3705 95 PLRLSYAGKVFRAREGRHGR-RAEFLQAGIELLGD 128 (390)
T ss_pred CceeeecchhhhcchhccCc-ccchhhhhhHHhCC
Confidence 78999999999987332222 35999998887443
|
|
| >PRK06461 single-stranded DNA-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=90.66 E-value=3 Score=36.07 Aligned_cols=84 Identities=21% Similarity=0.181 Sum_probs=56.8
Q ss_pred eeeeccccCCccCCCCCCCCEEEEEEEEeeec-------cCC--CeEEEEEEcCCCccceEEEEeCCccchhhHhccCCC
Q 012612 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR-------AQS--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (460)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R-------~~g--~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~ 81 (460)
..+|+||... ...|.+.|.|.++. +.+ .+.-+.|.|.|| +|.+.+..+. +.. +.
T Consensus 4 ~~kI~dL~~g--------~~~v~~~~~V~~i~~~~~~~~k~~~~~v~~~~l~D~TG--~I~~tlW~~~-----a~~--l~ 66 (129)
T PRK06461 4 ITKIKDLKPG--------MERVNVTVRVLEVGEPKVIQTKGGPRTISEAVVGDETG--RVKLTLWGEQ-----AGS--LK 66 (129)
T ss_pred ceEHHHcCCC--------CCceEEEEEEEEcCCceEEEeCCCceEEEEEEEECCCC--EEEEEEeCCc-----ccc--CC
Confidence 4678888542 25688899998542 122 356678899997 4898887753 224 89
Q ss_pred CCcEEEEE-eeEeecCCCCceEEEEEeE---EEEEec
Q 012612 82 TGASIWIQ-GNVVPSQGSKQKVELKVNK---IVLVGK 114 (460)
Q Consensus 82 ~g~~V~V~-G~v~~~~~~~~~~El~~~~---i~ils~ 114 (460)
+||+|.|. |.+..- . +.++|.+.+ +..+.+
T Consensus 67 ~GdvV~I~na~v~~f-~--G~lqL~i~~~~~i~~~~~ 100 (129)
T PRK06461 67 EGEVVEIENAWTTLY-R--GKVQLNVGKYGSISESDD 100 (129)
T ss_pred CCCEEEEECcEEeee-C--CEEEEEECCCEEEEECCc
Confidence 99999999 555543 2 368898874 555554
|
|
| >COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.34 E-value=0.22 Score=50.04 Aligned_cols=38 Identities=34% Similarity=0.729 Sum_probs=31.3
Q ss_pred HHHHhcCCC-CCcceeccHHHHHHHHcCCCCccccccccC
Q 012612 415 LDLRHYGSV-PHAGFGLGFERLVQFATGVENIRDAIPFPR 453 (460)
Q Consensus 415 l~~~~~G~p-p~~G~giGidRL~m~l~~~~~Irdv~~FPr 453 (460)
+.+.+||.| |---.|+|+|||+|.|.|.++||.. .+|.
T Consensus 314 ~ALaeY~Id~pVMNLGlGVERlaMIl~g~~DVR~m-vYpq 352 (536)
T COG2024 314 IALAEYGIDYPVMNLGLGVERLAMILHGADDVRSM-VYPQ 352 (536)
T ss_pred HHHHHcCCCCceeecchhHHHHHHHHhCchHHhhh-hccc
Confidence 445577876 8889999999999999999999964 5554
|
|
| >KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.90 E-value=0.97 Score=46.50 Aligned_cols=117 Identities=21% Similarity=0.289 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-CCCC-------CceeeeccccCCccccccccHHHHHH------
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLDFFEKPAFLTVSGQLNAE------ 210 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~-------~~F~v~~~~~~~~~~~L~~Spql~l~------ 210 (460)
.+...+-..+++..-+|+.++||+-+.||.+....- ++++ +...+. +- +...||.-..|.-+-
T Consensus 182 g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~~cg~~~~~d~~~~y~l--d~-~~~~~LiaTaE~plAa~~~~e 258 (455)
T KOG2509|consen 182 GAGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQKCGQLPRFDEEQYYVL--DG-GDEKYLIATAEQPLAAYHRDE 258 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHHHhccCcCCCcceEEee--cC-CccceeEeeccchhhhhhccc
Confidence 457778889999999999999999999998876322 1111 111110 10 123456544444221
Q ss_pred HHhc-CC-CceEEEecccccCC-C--CCCC---CCCccceeeeeecCCCHHHHHHHHHHHHHH
Q 012612 211 TYAT-AL-SNVYTFGPTFRAEN-S--NTSR---HLAEFWMIEPELAFADLKDDMACATAYLQY 265 (460)
Q Consensus 211 l~~~-g~-~rvfeI~~~FR~E~-~--~~~r---Hl~EFt~lE~e~~~~~~~~~~~~~e~li~~ 265 (460)
.+.. -+ -|+--.++|||.|- + .+.+ -.-+|+-+|.-. +.+-++.-++.|+|+..
T Consensus 259 ~~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fv-it~Pe~S~~~~eEmi~~ 320 (455)
T KOG2509|consen 259 WLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFV-ITGPEDSWEMLEEMINN 320 (455)
T ss_pred ccccccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEE-ecCcchhHHHHHHHHHH
Confidence 1111 11 24666899999994 2 1122 123899999643 34455555555555543
|
|
| >PRK07279 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=88.45 E-value=1.9 Score=49.85 Aligned_cols=74 Identities=14% Similarity=0.322 Sum_probs=54.8
Q ss_pred CCEEEEEEEEeeecc------CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 012612 29 GLMIVVAGWVRTLRA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (460)
Q Consensus 29 ~~~V~v~GwV~~~R~------~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~ 102 (460)
++.+++.|+|.++|. .+.++|+.|.|.+|. +.+++-++ .|+..+. .|..|.+|.|+|++... .+..
T Consensus 884 ~~~~~~~~~i~~~~~~~tk~~g~~maf~~leD~~g~--ie~~vFp~--~y~~~~~-~l~~~~~~~v~G~v~~~---~~~~ 955 (1034)
T PRK07279 884 NSEATILVQIQSIRVIRTKTKGQQMAFLSVTDTKKK--LDVTLFPE--TYRQYKD-ELKEGKFYYLKGKIQER---DGRL 955 (1034)
T ss_pred CCcceEEEEEEEEEEEEEcCCCCeEEEEEEeeCCCc--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEec---CCee
Confidence 456789999987653 134999999999975 99988764 3555442 39999999999999764 2357
Q ss_pred EEEEeEEE
Q 012612 103 ELKVNKIV 110 (460)
Q Consensus 103 El~~~~i~ 110 (460)
.+.++++.
T Consensus 956 ~l~~~~i~ 963 (1034)
T PRK07279 956 QMVLQQIQ 963 (1034)
T ss_pred EEEEeeee
Confidence 77777664
|
|
| >PRK13480 3'-5' exoribonuclease YhaM; Provisional | Back alignment and domain information |
|---|
Probab=88.36 E-value=3.6 Score=41.28 Aligned_cols=79 Identities=15% Similarity=0.242 Sum_probs=52.9
Q ss_pred CCEEEEEEEEeeecc----CCC-eEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEE
Q 012612 29 GLMIVVAGWVRTLRA----QSS-VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVE 103 (460)
Q Consensus 29 ~~~V~v~GwV~~~R~----~g~-~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~E 103 (460)
|+.|..-.-|.++.. .|+ ..-+.|.|.||. |...+..... +.... +..|++|.|+|++..-+. .+.
T Consensus 11 g~~v~~~~lv~~~~~~~~knG~~yl~l~l~D~tG~--I~ak~W~~~~--~~~~~--~~~g~vv~v~G~v~~y~g---~~Q 81 (314)
T PRK13480 11 GEQVDHFLLIKSATKGVASNGKPFLTLILQDKSGD--IEAKLWDVSP--EDEAT--YVPETIVHVKGDIINYRG---RKQ 81 (314)
T ss_pred CCEeeEEEEEEEceeeecCCCCeEEEEEEEcCCcE--EEEEeCCCCh--hhHhh--cCCCCEEEEEEEEEEECC---cce
Confidence 344444444444432 243 666778999974 9998876532 12345 999999999999986543 477
Q ss_pred EEEeEEEEEecCC
Q 012612 104 LKVNKIVLVGKSD 116 (460)
Q Consensus 104 l~~~~i~ils~~~ 116 (460)
+.+..++.+.+..
T Consensus 82 l~i~~i~~~~~~e 94 (314)
T PRK13480 82 LKVNQIRLATEED 94 (314)
T ss_pred EEEEEeEECCCCC
Confidence 8888998887753
|
|
| >cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70) | Back alignment and domain information |
|---|
Probab=86.99 E-value=3.9 Score=33.88 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=48.1
Q ss_pred CEEEEEEEEeee---cc------CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEe-eEeecCCC-
Q 012612 30 LMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG-NVVPSQGS- 98 (460)
Q Consensus 30 ~~V~v~GwV~~~---R~------~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G-~v~~~~~~- 98 (460)
..++|.|||.++ |. .|++.-++|.|..| +.|++.+..+... ... ..|..|+++.++| .|......
T Consensus 10 ~~~~I~~rV~~k~~~~~f~~~~~~g~~~~~~l~De~~-~~I~~t~~~~~~~--~f~-~~l~eG~vy~i~~~~V~~a~~~y 85 (104)
T cd04474 10 NKWTIKARVTNKSDIRTWSNARGEGKLFSFDLLDEDG-GEIRATFFNDAVD--KFY-DLLEVGKVYYISKGSVKVANKKF 85 (104)
T ss_pred CcEEEEEEEeeccccccccCCCCCcEEEEEEEEECCC-CEEEEEEehHHHH--Hhh-cccccccEEEEeccEEeeccccC
Confidence 458999999853 32 26788889999955 4799998875321 122 1399999999986 44443221
Q ss_pred ---CceEEEEEe
Q 012612 99 ---KQKVELKVN 107 (460)
Q Consensus 99 ---~~~~El~~~ 107 (460)
..++||...
T Consensus 86 ~~~~~~yeI~f~ 97 (104)
T cd04474 86 NTLKNDYEITFN 97 (104)
T ss_pred CCCCCcEEEEEC
Confidence 235666554
|
RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct |
| >cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB) | Back alignment and domain information |
|---|
Probab=85.70 E-value=7.7 Score=30.33 Aligned_cols=54 Identities=19% Similarity=0.227 Sum_probs=38.8
Q ss_pred CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEE-eeEeecCCCCceEEEEEeEE
Q 012612 45 SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ-GNVVPSQGSKQKVELKVNKI 109 (460)
Q Consensus 45 g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~-G~v~~~~~~~~~~El~~~~i 109 (460)
+++.=+.|.|.+| .|.+++..... ... +.+|++|.++ |++..-. +.++|.+.+.
T Consensus 22 ~~~~~~~l~D~TG--~i~~~~W~~~~----~~~--~~~G~vv~i~~~~v~~~~---g~~ql~i~~~ 76 (82)
T cd04491 22 GKVQSGLVGDETG--TIRFTLWDEKA----ADD--LEPGDVVRIENAYVREFN---GRLELSVGKN 76 (82)
T ss_pred eEEEEEEEECCCC--EEEEEEECchh----ccc--CCCCCEEEEEeEEEEecC---CcEEEEeCCc
Confidence 5566678899996 48988876532 234 9999999999 7776543 3577777553
|
SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating |
| >PRK07211 replication factor A; Reviewed | Back alignment and domain information |
|---|
Probab=85.22 E-value=5.7 Score=42.11 Aligned_cols=82 Identities=17% Similarity=0.221 Sum_probs=57.6
Q ss_pred eeeccccCCccCCCCCCCCEEEEEEEEeeecc-----------CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCC
Q 012612 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA-----------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI 80 (460)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~-----------~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l 80 (460)
.+|++|... ...|+|.|||.++-. .|++.=+.|-|.+| .|++++..+.... .... |
T Consensus 54 ~~I~dL~pg--------~~~vtI~aRV~~~~~~Rt~~~~~~~~eGkv~~v~l~DeTG--~Ir~TlW~d~ad~-~~~~--L 120 (485)
T PRK07211 54 NGIADIEPG--------MDEVKFLAKVLSIGDLRTFERDGEDEDGRVINVEVADETG--SVRVAFWDEQAVA-AEEE--L 120 (485)
T ss_pred ccHhhCCCC--------CCceEEEEEEeEccCceEEEeCCCCCCcEEEEEEEEcCCC--eEEEEEechHhHh-hhcc--c
Confidence 357777542 356999999988732 26888899999996 4999998764211 1234 9
Q ss_pred CCCcEEEEEeeEeecCCCCceEEEEEeEE
Q 012612 81 TTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (460)
Q Consensus 81 ~~g~~V~V~G~v~~~~~~~~~~El~~~~i 109 (460)
..|+++.|.|.++..- +.+||.+..+
T Consensus 121 e~GdV~~I~~~~~~~y---s~~El~i~~v 146 (485)
T PRK07211 121 EVGQVLRIKGRPKDGY---NGLEVSVDKV 146 (485)
T ss_pred CCCCEEEEeceEeccc---cceEEEEeeE
Confidence 9999999999875322 2478887753
|
|
| >cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG | Back alignment and domain information |
|---|
Probab=84.95 E-value=9.8 Score=28.37 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=41.2
Q ss_pred EEEEEeeecc----CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeE
Q 012612 34 VAGWVRTLRA----QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (460)
Q Consensus 34 v~GwV~~~R~----~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~ 108 (460)
+.|.|.+.+. .+++.-+.+.|+++ .+.+++-... .|. .+. +..|+.+.|.|++..... .+++.-.+
T Consensus 2 i~~~V~~~~~~~~~~~~~~~~~~~D~~g--~i~~~~F~~~-~~~-~~~--~~~G~~~~v~Gkv~~~~~---~~qi~~P~ 71 (75)
T cd04488 2 VEGTVVSVEVVPRRGRRRLKVTLSDGTG--TLTLVFFNFQ-PYL-KKQ--LPPGTRVRVSGKVKRFRG---GLQIVHPE 71 (75)
T ss_pred EEEEEEEEEeccCCCccEEEEEEEcCCC--EEEEEEECCC-HHH-Hhc--CCCCCEEEEEEEEeecCC---eeEEeCCc
Confidence 4566655432 13466677899985 4888776421 121 245 999999999999987532 35554433
|
RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha |
| >COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=84.76 E-value=4.4 Score=42.25 Aligned_cols=76 Identities=12% Similarity=0.214 Sum_probs=56.4
Q ss_pred CCEEEEEEEEeeeccC-CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEe
Q 012612 29 GLMIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (460)
Q Consensus 29 ~~~V~v~GwV~~~R~~-g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~ 107 (460)
-..|+|.|-|.+++.. .+..|+.|.|.. ..|+|++-+.....-.+ . +..|+-|.|.|++.-=+.. |.+.|.++
T Consensus 23 ~~~V~v~GEISn~t~~~sgH~YFtLKD~~--A~i~c~mf~~~~~~l~f-~--p~eG~~V~v~G~is~Y~~r-G~YQi~~~ 96 (440)
T COG1570 23 LGQVWVRGEISNFTRPASGHLYFTLKDER--AQIRCVMFKGNNRRLKF-R--PEEGMQVLVRGKISLYEPR-GDYQIVAE 96 (440)
T ss_pred CCeEEEEEEecCCccCCCccEEEEEccCC--ceEEEEEEcCcccccCC-C--ccCCCEEEEEEEEEEEcCC-CceEEEEe
Confidence 4569999999999864 338899999997 45999887754211011 3 8889999999999764433 37888888
Q ss_pred EEE
Q 012612 108 KIV 110 (460)
Q Consensus 108 ~i~ 110 (460)
+++
T Consensus 97 ~~~ 99 (440)
T COG1570 97 SME 99 (440)
T ss_pred cCC
Confidence 776
|
|
| >COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.55 E-value=5.2 Score=41.40 Aligned_cols=74 Identities=19% Similarity=0.323 Sum_probs=53.6
Q ss_pred CEEEEEEEEeeecc--CCCeEEEEEEcCCCccceEEEEeCCccchh-hHhccCCCCCcEEEEEeeEeecCCCCceEEEEE
Q 012612 30 LMIVVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYD-QVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (460)
Q Consensus 30 ~~V~v~GwV~~~R~--~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~-~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~ 106 (460)
..++|.|.|...-. -|+..|+.+.|+.| .|-+++-....+|. .+++ |.+||.|.+.|.++.. . |.+
T Consensus 267 ~~~~v~g~v~~~p~~ieGghv~v~i~d~~G--~I~~~A~eptk~fr~~a~~--L~pGD~i~~~G~~~~~-----~--~n~ 335 (421)
T COG1571 267 SKYRVVGRVEAEPRAIEGGHVVVEITDGEG--EIGAVAFEPTKEFRELARK--LIPGDEITVYGSVKPG-----T--LNL 335 (421)
T ss_pred cceEEEEEEecccEEeeCCEEEEEecCCCc--eEEEEEecccccchHHHHh--cCCCCEEEEecCcccc-----c--eeE
Confidence 45788998877643 49999999999996 47887765443343 3677 9999999999999753 2 566
Q ss_pred eEEEEEec
Q 012612 107 NKIVLVGK 114 (460)
Q Consensus 107 ~~i~ils~ 114 (460)
++++++.-
T Consensus 336 ek~~v~~l 343 (421)
T COG1571 336 EKFQVLKL 343 (421)
T ss_pred EEEEEEEe
Confidence 66665443
|
|
| >PRK07217 replication factor A; Reviewed | Back alignment and domain information |
|---|
Probab=84.28 E-value=17 Score=36.30 Aligned_cols=92 Identities=14% Similarity=0.212 Sum_probs=66.7
Q ss_pred eeeccccCCccCCCCCCCCEEEEEEEEeee--ccCCCeEE-EEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEE
Q 012612 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTL--RAQSSVTF-IEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88 (460)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~--R~~g~~~F-v~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V 88 (460)
.+|+||.. .++.|+|.|+|.+. +.+..+.. -.|-|.|| +|..++..+.. ... |..|+++.+
T Consensus 73 ~kI~Di~~--------~~~~VsV~aKVl~l~e~~~~si~qvGllgDETG--~IkfT~W~~s~----~~~--leeGd~~rI 136 (311)
T PRK07217 73 VNIADIDE--------PEQWVDVTAKVVQLWEPSSDSIAQVGLLGDETG--TIKFTKWAKSD----LPE--LEEGKSYLL 136 (311)
T ss_pred eeeeecCC--------CCCcEEEEEEEEEecCCCCCceEEEEEEEcCCc--eEEEEEccCCC----CCc--ccCCCEEEE
Confidence 46777754 46779999999988 33566666 45789986 48888776421 123 899999999
Q ss_pred EeeEeecCCCCceEEEEEeEEEEEecCCCCCCC
Q 012612 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121 (460)
Q Consensus 89 ~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~ 121 (460)
.+-.+..-.+ ..+|.+.+...+.+.+.+.++
T Consensus 137 ~na~v~ey~G--~~~lnlg~~t~I~~~de~IeV 167 (311)
T PRK07217 137 KNVVTDEYQG--RFSVKLNRTTSIEELDEDIEV 167 (311)
T ss_pred EeEEEeeECC--EEEEEeCCceEEEeCCCCccc
Confidence 9888775444 689999888888777655554
|
|
| >PRK14699 replication factor A; Provisional | Back alignment and domain information |
|---|
Probab=84.10 E-value=6.2 Score=42.02 Aligned_cols=84 Identities=14% Similarity=0.149 Sum_probs=60.5
Q ss_pred CCCEEEEEEEEeeec--------c--CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCC
Q 012612 28 VGLMIVVAGWVRTLR--------A--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG 97 (460)
Q Consensus 28 ~~~~V~v~GwV~~~R--------~--~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~ 97 (460)
.+..|+|.|+|.++- + .|++.=+.|.|.|| .|.+++..+... .+.. ++.|+.|.+.+.-++-..
T Consensus 285 ~~~~v~I~grV~~~~~~r~~~~~~Gseg~v~~~~l~DeTG--~Ir~T~W~~~a~--~~~~--i~~Gd~v~i~~~y~~~~~ 358 (484)
T PRK14699 285 DMNNINISGRVLDISEVRTFEKKDGSPGRVGNLLLGDSTG--KIRLTLWDEKTN--FLDE--IDFDETVEVLNAYSRENT 358 (484)
T ss_pred CCceeEEEEEEEEcCCCeEEEcCCCCeeEEEEEEEECCCC--eEEEEEeCcccc--cccc--cCCCceEEEEeEEEEecc
Confidence 357799999999762 1 25666688999997 499999876432 1334 889999998755444333
Q ss_pred CCceEEEEEeEEEEEecCCC
Q 012612 98 SKQKVELKVNKIVLVGKSDP 117 (460)
Q Consensus 98 ~~~~~El~~~~i~ils~~~~ 117 (460)
..+.+||.+.+-.++.+|..
T Consensus 359 ~~~~~eL~~~~~t~I~~~~~ 378 (484)
T PRK14699 359 FSQQVELNLGARGIIQKSEK 378 (484)
T ss_pred CCccEEEEecCceeEeecCC
Confidence 34579999988888888763
|
|
| >PRK15491 replication factor A; Provisional | Back alignment and domain information |
|---|
Probab=83.84 E-value=8.2 Score=39.75 Aligned_cols=81 Identities=17% Similarity=0.225 Sum_probs=56.4
Q ss_pred CEEEEEEEEeeecc-------C---CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEe-eEeecCCC
Q 012612 30 LMIVVAGWVRTLRA-------Q---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG-NVVPSQGS 98 (460)
Q Consensus 30 ~~V~v~GwV~~~R~-------~---g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G-~v~~~~~~ 98 (460)
..|.|.|+|.++-. . +++.=+.|-|.+| .|.+++..+...+ +.. |..||+|.+.+ .++.+. -
T Consensus 177 ~~V~I~g~V~~~~~~r~~~~~~G~~~~v~~~~l~DetG--~Ir~t~W~~~a~~--~~~--l~~Gd~V~i~~~~~r~~~-~ 249 (374)
T PRK15491 177 SDINIVGKVLDISDVRTFQKKDGSQGRVRNITIGDETG--KIRVTLWDGKTDL--ADK--LENGDSVEIINGYARTNN-Y 249 (374)
T ss_pred ccEEEEEEEEEccCceEEEecCCCeEEEEEEEEECCCC--eEEEEEecchhcc--ccc--CCCCCEEEEEeceEEEec-c
Confidence 45999999998843 2 3455588899986 4999888764321 234 89999999965 455432 2
Q ss_pred CceEEEEEeEEEEEecCCC
Q 012612 99 KQKVELKVNKIVLVGKSDP 117 (460)
Q Consensus 99 ~~~~El~~~~i~ils~~~~ 117 (460)
.+.+||.+..-..+.+|..
T Consensus 250 ~g~~El~~~~~s~I~~~~~ 268 (374)
T PRK15491 250 SQEVEIQIGNHGSLRKTDR 268 (374)
T ss_pred CCCEEEEeCCCceEEECCc
Confidence 3479999877666777753
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=83.49 E-value=8.9 Score=42.77 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=51.9
Q ss_pred CCCCEEEEEEEEeeeccC---CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEE
Q 012612 27 RVGLMIVVAGWVRTLRAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVE 103 (460)
Q Consensus 27 ~~~~~V~v~GwV~~~R~~---g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~E 103 (460)
..|+.|+|.|.|.+.+.. +++.-+.+.|++|. +++++=.-...|- .+. +.+|+.+.|.|++.... +.++
T Consensus 57 ~~g~~vtv~g~V~~~~~~~~~~~~~~v~l~D~tg~--i~l~~F~~n~~~~-~~~--l~~G~~~~v~Gkv~~~~---~~~q 128 (681)
T PRK10917 57 RPGEKVTVEGEVLSAEVVFGKRRRLTVTVSDGTGN--LTLRFFNFNQPYL-KKQ--LKVGKRVAVYGKVKRGK---YGLE 128 (681)
T ss_pred CCCCEEEEEEEEEEEEEccCCceEEEEEEEECCeE--EEEEEEccCcHHH-Hhh--CCCCCEEEEEEEEEecC---CeEE
Confidence 457889999999887432 35677888999864 8887763111221 244 99999999999998732 2355
Q ss_pred EEEeEEEE
Q 012612 104 LKVNKIVL 111 (460)
Q Consensus 104 l~~~~i~i 111 (460)
+.-.++.+
T Consensus 129 m~~P~~~~ 136 (681)
T PRK10917 129 MVHPEYEV 136 (681)
T ss_pred EEcCEEEe
Confidence 55455544
|
|
| >PRK12366 replication factor A; Reviewed | Back alignment and domain information |
|---|
Probab=83.43 E-value=8.5 Score=42.57 Aligned_cols=91 Identities=16% Similarity=0.244 Sum_probs=60.9
Q ss_pred eeeccccCCccCCCCCCCCEEEEEEEEeeecc---------CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCC
Q 012612 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA---------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITT 82 (460)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~---------~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~ 82 (460)
.+|++|.+. ..|..++|.|||.++-. .|++-=+.|.|.+| .|++++..+..+ .+.. |..
T Consensus 280 ~pI~~L~~~------~~g~~~~I~grV~~~~~~R~f~~~~g~gkv~s~~l~D~tG--~IR~t~w~~~~d--~~~~--l~~ 347 (637)
T PRK12366 280 VNIEELTEF------EDGEEVDVKGRIIAISDKREVERDDRTAEVQDIELADGTG--RVRVSFWGEKAK--ILEN--LKE 347 (637)
T ss_pred eeHHHCCcc------cCCCEEEEEEEEEecCCceEEEcCCCcEEEEEEEEEcCCC--eEEEEEeCchhh--hhcc--cCC
Confidence 455555442 14568999999998832 27788889999986 599999876432 2234 788
Q ss_pred CcEEEEEeeEeec---CCCCceEEEEEeEEEEEec
Q 012612 83 GASIWIQGNVVPS---QGSKQKVELKVNKIVLVGK 114 (460)
Q Consensus 83 g~~V~V~G~v~~~---~~~~~~~El~~~~i~ils~ 114 (460)
|+++.+++-..+. ..+...+||.+..-..+.+
T Consensus 348 G~vy~is~~~vk~y~~~~~~~~~El~~~~~s~I~~ 382 (637)
T PRK12366 348 GDAVKIENCKVRTYYDNEGEKRVDLNAGYSSEIIK 382 (637)
T ss_pred CCEEEEecCEEeeccccCCCcCEEEEcCCceEEEe
Confidence 9999998655441 1233468888865544433
|
|
| >PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=83.42 E-value=6.5 Score=41.31 Aligned_cols=79 Identities=19% Similarity=0.264 Sum_probs=59.0
Q ss_pred CCEEEEEEEEeeeccC-CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEe
Q 012612 29 GLMIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (460)
Q Consensus 29 ~~~V~v~GwV~~~R~~-g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~ 107 (460)
-..|+|.|=|.+.+.+ ++-+|+.|.|.. ..|-||+..... ..+. ..+..|+-|.|.|.+.--+.. |.+.|.|.
T Consensus 23 ~~~v~v~gEis~~~~~~sGH~Yf~Lkd~~--a~i~~~~~~~~~--~~~~-~~~~~G~~v~v~g~~~~y~~~-g~~ql~v~ 96 (438)
T PRK00286 23 LGQVWVRGEISNFTRHSSGHWYFTLKDEI--AQIRCVMFKGSA--RRLK-FKPEEGMKVLVRGKVSLYEPR-GDYQLIVE 96 (438)
T ss_pred CCcEEEEEEeCCCeeCCCCeEEEEEEcCC--cEEEEEEEcChh--hcCC-CCCCCCCEEEEEEEEEEECCC-CCEEEEEE
Confidence 4679999999999765 567899999997 459999887532 1121 128899999999999854322 36999999
Q ss_pred EEEEEe
Q 012612 108 KIVLVG 113 (460)
Q Consensus 108 ~i~ils 113 (460)
+|...+
T Consensus 97 ~i~~~g 102 (438)
T PRK00286 97 EIEPAG 102 (438)
T ss_pred EeeeCC
Confidence 987543
|
|
| >cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC) | Back alignment and domain information |
|---|
Probab=82.93 E-value=21 Score=28.12 Aligned_cols=73 Identities=19% Similarity=0.231 Sum_probs=46.4
Q ss_pred EEEEEEEeee--cc--CCC-eEEEEEEcCCCccceEEEEeCCccchhhHhccCCC-CCcEEEEEeeEeecCCCCceEEEE
Q 012612 32 IVVAGWVRTL--RA--QSS-VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT-TGASIWIQGNVVPSQGSKQKVELK 105 (460)
Q Consensus 32 V~v~GwV~~~--R~--~g~-~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~-~g~~V~V~G~v~~~~~~~~~~El~ 105 (460)
|+|.|-|-.+ |. .|+ +.-+.+.|.+.. +-|..-.. ..-+.+.. |. .|+.|.|+|.+....= .+++.+.
T Consensus 2 v~i~G~Vf~~e~re~k~g~~i~~~~itD~t~S--i~~K~F~~-~~~~~~~~--ik~~G~~v~v~G~v~~D~f-~~e~~~~ 75 (82)
T cd04484 2 VVVEGEVFDLEIRELKSGRKILTFKVTDYTSS--ITVKKFLR-KDEKDKEE--LKSKGDWVRVRGKVQYDTF-SKELVLM 75 (82)
T ss_pred EEEEEEEEEEEEEEecCCCEEEEEEEEcCCCC--EEEEEecc-CChhHHhh--cccCCCEEEEEEEEEEccC-CCceEEE
Confidence 6788888766 22 344 444788999854 55543332 11223445 88 9999999999976532 2367776
Q ss_pred EeEEE
Q 012612 106 VNKIV 110 (460)
Q Consensus 106 ~~~i~ 110 (460)
+..+.
T Consensus 76 i~~i~ 80 (82)
T cd04484 76 INDIE 80 (82)
T ss_pred eeeEE
Confidence 66554
|
Replication in B. subtilis and Staphylococcus aureus requires two different polymerases, polC and DnaE. The holoenzyme is thought to include the two different polymerases. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis. |
| >TIGR00237 xseA exodeoxyribonuclease VII, large subunit | Back alignment and domain information |
|---|
Probab=82.65 E-value=6.9 Score=41.10 Aligned_cols=76 Identities=13% Similarity=0.274 Sum_probs=56.4
Q ss_pred CEEEEEEEEeeeccC-CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeE
Q 012612 30 LMIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (460)
Q Consensus 30 ~~V~v~GwV~~~R~~-g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~ 108 (460)
..|+|.|=|.+.+.+ .+-+|+.|.|.. ..|.||+-+... ..++ ..+..|+-|.|.|.|.--+.. |.+.|.|.+
T Consensus 18 ~~v~V~GEisn~~~~~sGH~YFtLkD~~--a~i~~vmf~~~~--~~l~-f~~~~G~~V~v~g~v~~y~~~-G~~ql~v~~ 91 (432)
T TIGR00237 18 LQVWIQGEISNFTQPVSGHWYFTLKDEN--AQVRCVMFRGNN--NRLK-FRPQNGQQVLVRGGISVYEPR-GDYQIICFE 91 (432)
T ss_pred CcEEEEEEecCCeeCCCceEEEEEEcCC--cEEEEEEEcChh--hCCC-CCCCCCCEEEEEEEEEEECCC-CcEEEEEEE
Confidence 379999999999764 557888999987 469998877532 1111 127899999999999654332 369999998
Q ss_pred EEE
Q 012612 109 IVL 111 (460)
Q Consensus 109 i~i 111 (460)
+.-
T Consensus 92 i~~ 94 (432)
T TIGR00237 92 MQP 94 (432)
T ss_pred ecc
Confidence 875
|
This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits. |
| >KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.40 E-value=2.7 Score=48.69 Aligned_cols=116 Identities=12% Similarity=0.117 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeec-CCC-CCCCCceeeeccccCCc----cccccccHHHHHHHHhcC--
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITA-SDC-EGAGEQFCVTTLDFFEK----PAFLTVSGQLNAETYATA-- 215 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~-~~~-eg~~~~F~v~~~~~~~~----~~~L~~Spql~l~l~~~g-- 215 (460)
+-..-.+|..+...+-+-|.++|++|++||-+.. +++ -+.+++..+- +.-|. ++=|++--- +.++..
T Consensus 928 ~~~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~~~~~~~~~v~~l--d~sG~~v~Lp~DLr~pfa---r~vs~N~~ 1002 (1351)
T KOG1035|consen 928 TEINNELREYVVEEVVKIFRKHGAIELETPPLSLRNACAYFSRKAVELL--DHSGDVVELPYDLRLPFA---RYVSRNSV 1002 (1351)
T ss_pred chhHHHHHHHHHHHHHHHHHHhcceeccCCccccccccchhccceeeee--cCCCCEEEeeccccchHH---HHhhhchH
Confidence 3445567888888899999999999999996664 333 2333333221 22232 223332111 211111
Q ss_pred -CCceEEEecccccCCCCCCCCCCccceeeeeecCCC----HHHHHHHHHHHHHHHH
Q 012612 216 -LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDMACATAYLQYVV 267 (460)
Q Consensus 216 -~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~----~~~~~~~~e~li~~l~ 267 (460)
.-|-|+|++|||.+. .+ |..|++.+++-....+ -.|++.++-+++..++
T Consensus 1003 ~~~Kry~i~rVyr~~~--~~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~~l 1056 (1351)
T KOG1035|consen 1003 LSFKRYCISRVYRPAI--HN-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTEIL 1056 (1351)
T ss_pred HHHHHhhhheeecccc--cC-CCccccceeeeEecCCCCccHHHHHHHHHHHHHHHh
Confidence 234599999999987 23 9999999998775442 3477777777777644
|
|
| >PRK07218 replication factor A; Provisional | Back alignment and domain information |
|---|
Probab=81.29 E-value=12 Score=39.18 Aligned_cols=83 Identities=16% Similarity=0.140 Sum_probs=56.1
Q ss_pred eeeeccccCCccCCCCCCCCEEEEEEEEeeecc--------CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCC
Q 012612 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA--------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITT 82 (460)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~--------~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~ 82 (460)
..+|+||.. .++.|.|.|+|.++-. .|.+.=+.|-|.|| ++.+++..+. . |..
T Consensus 58 ~~kI~Di~~--------~~~~V~v~~kVl~i~~rt~r~dg~~g~v~~~~igDeTG--~Ir~tlW~~~-------~--l~~ 118 (423)
T PRK07218 58 SKDIKELST--------DDKNVTVTGRVLTIGERSIRYQGDDHVIYEGILADETG--TISYTAWKDF-------G--LSP 118 (423)
T ss_pred CccHhhCCC--------CCceeEEEEEEEEecceeEecCCCceEEEEEEEECCCC--eEEEEEECCC-------C--CCC
Confidence 356777754 2477999999998831 24566667778875 3777777632 3 999
Q ss_pred CcEEEEEeeEeecCCCCceEEEEEeEEEEEec
Q 012612 83 GASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (460)
Q Consensus 83 g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~ 114 (460)
||+|.+.+-..+.-. +.++|.+.+-.-+.+
T Consensus 119 Gdvv~I~na~vre~~--g~~el~ig~~t~I~~ 148 (423)
T PRK07218 119 GDTVTIGNAGVREWD--GRPELNIGESTTVSL 148 (423)
T ss_pred CCEEEEeccEeeccC--CceEEeccCcceEEE
Confidence 999999976655433 358888755444443
|
|
| >KOG3108 consensus Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=80.56 E-value=13 Score=36.35 Aligned_cols=74 Identities=23% Similarity=0.357 Sum_probs=52.4
Q ss_pred CEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccc-hhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeE
Q 012612 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (460)
Q Consensus 30 ~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~-~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~ 108 (460)
..|.+.|||.++-.+..-+.++|-|++|. |=+........ -.+... |..|-.|.|.|.++.-.. ..+|.+.+
T Consensus 69 ~~v~~VGivr~~e~~~t~i~y~I~D~tg~--id~r~W~~~~~~~~e~~~--l~~~~yVkv~G~Lk~f~G---k~sl~~fk 141 (265)
T KOG3108|consen 69 SAVSIVGIVRNIEKSATNITYEIEDGTGQ--IDVRQWFHDNAESEEMPA--LETGTYVKVYGHLKPFQG---KKSLQVFK 141 (265)
T ss_pred EEEEEEEEEEeceecCcceEEEEecCccc--EEEEEeccccchhhhCcc--cccCcEEEeeecccCCCC---ceeEEEEe
Confidence 35789999999988866677899999974 55655543311 112335 999999999999987543 35666665
Q ss_pred EE
Q 012612 109 IV 110 (460)
Q Consensus 109 i~ 110 (460)
|.
T Consensus 142 I~ 143 (265)
T KOG3108|consen 142 IR 143 (265)
T ss_pred ee
Confidence 54
|
|
| >cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
Probab=80.33 E-value=10 Score=29.29 Aligned_cols=46 Identities=13% Similarity=0.309 Sum_probs=33.5
Q ss_pred EEEEEEeeeccCCCeEEEEEE-cCCCccceEEEEeCCccchhhHhccCCCCCcEEEEE
Q 012612 33 VVAGWVRTLRAQSSVTFIEVN-DGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (460)
Q Consensus 33 ~v~GwV~~~R~~g~~~Fv~lr-D~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (460)
.|.|+|.++.++| +|+++- ++ +...+..+...+. .. +++|+.|.+.
T Consensus 7 ~v~g~V~si~d~G--~~v~~g~~g-----v~Gfl~~~~~~~~--~~--~~~Gq~v~~~ 53 (74)
T cd05694 7 VLSGCVSSVEDHG--YILDIGIPG-----TTGFLPKKDAGNF--SK--LKVGQLLLCV 53 (74)
T ss_pred EEEEEEEEEeCCE--EEEEeCCCC-----cEEEEEHHHCCcc--cc--cCCCCEEEEE
Confidence 5999999999998 889983 22 5666765543322 34 8999998876
|
Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea. |
| >PRK07459 single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=80.09 E-value=23 Score=30.24 Aligned_cols=52 Identities=15% Similarity=0.301 Sum_probs=35.3
Q ss_pred eEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecC----C-CC--ceEEEEEeEEEEEecC
Q 012612 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ----G-SK--QKVELKVNKIVLVGKS 115 (460)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~----~-~~--~~~El~~~~i~ils~~ 115 (460)
+.|++-.... +.+.+ .|+.|+.|.|+|.+.... . ++ ...||.+++|.+|++.
T Consensus 46 ~~v~~wg~~A--e~~~~-~l~KG~~V~V~G~l~~~~~~d~d~G~~r~~~ei~a~~i~~L~~k 104 (121)
T PRK07459 46 FNLEIWGKTA--QVAAD-YVKKGSLIGITGSLKFDRWTDRNTGEDRSKPVIRVDRLELLGSK 104 (121)
T ss_pred EEEEEehHHH--HHHHH-HcCCCCEEEEEEEEEecceEcCCCCeEEEEEEEEEeEEEECcCC
Confidence 6666654321 12222 399999999999998652 1 21 3689999999999754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 460 | ||||
| 1x54_A | 434 | Crystal Structure Of Asparaginyl-trna Synthetase Fr | 8e-59 | ||
| 3m4p_A | 456 | Entamoeba Histolytica Asparaginyl-Trna Synthetase ( | 5e-48 | ||
| 1b8a_A | 438 | Aspartyl-trna Synthetase Length = 438 | 3e-42 | ||
| 3nel_A | 438 | Aspartyl-Trna Synthetase Complexed With Aspartic Ac | 1e-41 | ||
| 2xti_A | 437 | Asparaginyl-Trna Synthetase From Brugia Malayi Comp | 1e-41 | ||
| 2xgt_A | 435 | Asparaginyl-Trna Synthetase From Brugia Malayi Comp | 1e-41 | ||
| 1wyd_A | 429 | Crystal Structure Of Aspartyl-Trna Synthetase From | 2e-41 | ||
| 1n9w_A | 422 | Crystal Structure Of The Non-Discriminating And Arc | 1e-30 | ||
| 1eov_A | 487 | Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.1 | 1e-25 | ||
| 1asy_A | 490 | Class Ii Aminoacyl Transfer Rna Synthetases: Crysta | 1e-25 | ||
| 3i7f_A | 548 | Aspartyl Trna Synthetase From Entamoeba Histolytica | 2e-21 | ||
| 3p8t_A | 294 | Crystal Structure Of The Archaeal Asparagine Synthe | 5e-12 | ||
| 1nnh_A | 294 | Hypothetical Protein From Pyrococcus Furiosus Pfu-1 | 9e-12 | ||
| 3e9h_A | 493 | Lysyl-Trna Synthetase From Bacillus Stearothermophi | 3e-11 | ||
| 1lyl_A | 504 | Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexe | 5e-10 | ||
| 1bbu_A | 504 | Lysyl-Trna Synthetase (Lyss) Complexed With Lysine | 2e-09 | ||
| 1eqr_A | 590 | Crystal Structure Of Free Aspartyl-Trna Synthetase | 5e-08 | ||
| 1c0a_A | 585 | Crystal Structure Of The E. Coli Aspartyl-Trna Synt | 5e-08 | ||
| 4ex5_A | 529 | Crystal Structure Of Lysyl-Trna Synthetase Lysrs Fr | 6e-07 | ||
| 4ah6_A | 617 | Human Mitochondrial Aspartyl-Trna Synthetase Length | 2e-04 | ||
| 1efw_A | 580 | Crystal Structure Of Aspartyl-Trna Synthetase From | 2e-04 | ||
| 1efw_A | 580 | Crystal Structure Of Aspartyl-Trna Synthetase From | 3e-04 |
| >pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From Pyrococcus Horikoshii Complexed With Asparaginyl-adenylate Length = 434 | Back alignment and structure |
|
| >pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs) In Complex With Asparaginyl-Adenylate Length = 456 | Back alignment and structure |
|
| >pdb|1B8A|A Chain A, Aspartyl-trna Synthetase Length = 438 | Back alignment and structure |
|
| >pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid Length = 438 | Back alignment and structure |
|
| >pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg Length = 437 | Back alignment and structure |
|
| >pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With The Sulphamoyl Analogue Of Asparaginyl-Adenylate Length = 435 | Back alignment and structure |
|
| >pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Sulfolobus Tokodaii Length = 429 | Back alignment and structure |
|
| >pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal- Type Aspartyl-Trna Synthetase From Thermus Thermophilus Length = 422 | Back alignment and structure |
|
| >pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From Yeast Length = 487 | Back alignment and structure |
|
| >pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal Structure Of Yeast Aspartyl-Trna Synthetase Complexed With Trna Asp Length = 490 | Back alignment and structure |
|
| >pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica Length = 548 | Back alignment and structure |
|
| >pdb|3P8T|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A Length = 294 | Back alignment and structure |
|
| >pdb|1NNH|A Chain A, Hypothetical Protein From Pyrococcus Furiosus Pfu-1801964 Length = 294 | Back alignment and structure |
|
| >pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus Complexed With L-Lysylsulfamoyl Adenosine Length = 493 | Back alignment and structure |
|
| >pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With Lysine Length = 504 | Back alignment and structure |
|
| >pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine Length = 504 | Back alignment and structure |
|
| >pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From Escherichia Coli Length = 590 | Back alignment and structure |
|
| >pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase : Trnaasp : Aspartyl-Adenylate Complex Length = 585 | Back alignment and structure |
|
| >pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From Burkholderia Thailandensis Bound To Lysine Length = 529 | Back alignment and structure |
|
| >pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase Length = 617 | Back alignment and structure |
|
| >pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus Thermophilus Complexed To Trnaasp From Escherichia Coli Length = 580 | Back alignment and structure |
|
| >pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus Thermophilus Complexed To Trnaasp From Escherichia Coli Length = 580 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Length = 434 | Back alignment and structure |
|---|
Score = 661 bits (1708), Expect = 0.0
Identities = 154/456 (33%), Positives = 235/456 (51%), Gaps = 31/456 (6%)
Query: 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD- 68
+K+ +VK + G + +AGWV T F+ + D + + +Q V+ +
Sbjct: 3 EKVYCQEVKP------ELDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGI--VQAVVAKNV 54
Query: 69 --AEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS-YPIQKKR 125
E +++ K + +S+ ++G V + + E+ V K+ ++ P ++
Sbjct: 55 VGEETFEKAKK--LGRESSVIVEGIVKADERAPGGAEVHVEKLEVIQAVSEFPIPENPEQ 112
Query: 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGE 185
S E L HL RT A+ +V+ L A ++ ++G+ + PI+ EG
Sbjct: 113 ASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGAT 172
Query: 186 QFCVTTLDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEP 245
F + +F+K A+L+ S QL E L V++ P+FRAE S T RHL EFW +E
Sbjct: 173 LFKL---KYFDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLEL 229
Query: 246 ELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLS 305
E A+ DL D M + Y+V+ L+ K++++ F + E F ++S
Sbjct: 230 EAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLTT------LKNTEPPFPRIS 283
Query: 306 YTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN 365
Y +AI++L E WG DL ++ ER LTEE F P V YPK IKAFYM+++
Sbjct: 284 YDEAIDILQSKGVNVE----WGDDLGADEERVLTEE-FDR-PFFVYGYPKHIKAFYMKED 337
Query: 366 -DDGRTVAAMDMLVPR-IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSV 423
+D R V A DML P GE+IGGSQRE+ + L R+ E ++ Y WYLDLR YGSV
Sbjct: 338 PNDPRKVLASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYGSV 397
Query: 424 PHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459
PH+GFGLG ERLV + +++IR A FPRTP +
Sbjct: 398 PHSGFGLGVERLVAWVLKLDHIRWAALFPRTPARLY 433
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Length = 456 | Back alignment and structure |
|---|
Score = 655 bits (1692), Expect = 0.0
Identities = 126/463 (27%), Positives = 208/463 (44%), Gaps = 36/463 (7%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTS 67
I D G ++ GW +R ++ F+E+ DGS QCV+
Sbjct: 17 PIVCNIRDAA-------GLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGY--CQCVIFG 67
Query: 68 DAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQ--------KVELKVNKIVLVGKSDP-S 118
+ L T S+ I G + G +E++V + ++G+S
Sbjct: 68 KELCEPEKVKLL-TRECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDL 126
Query: 119 YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
I K S H+ R+ V ++R+ + + K++ +N F I P I +
Sbjct: 127 ENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKT 186
Query: 179 DCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLA 238
CEG F + +F +PA+LT S QL E+ +L + ++RAE S T RHLA
Sbjct: 187 QCEGGSTLFKL---QYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQSRTVRHLA 243
Query: 239 EFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE 298
E+ +E EL F +D + + V+ ++ + + N ++ +
Sbjct: 244 EYLHLEAELPFISFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPHLK---------LPT 294
Query: 299 RDFVQLSYTDAIELLIKAK-KKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEI 357
R F +++Y DAI+ + ++G D+ + ER +T+E GCP+ + +P ++
Sbjct: 295 RPFKRMTYADAIKYCNDHGILNKDKPFEYGEDISEKPERQMTDEI--GCPIFMIHFPSKM 352
Query: 358 KAFYMRQ-NDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLD 416
KAFYM + ++D+L+P +GE++GGS R + L G LN D Y+WY
Sbjct: 353 KAFYMSKVPGHPDLTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQ 412
Query: 417 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459
R YGS PH G+GLG ERLV + G ++IR +PR E
Sbjct: 413 QRKYGSCPHGGYGLGVERLVMWLLGEDHIRKVCLYPRYLERCE 455
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Length = 435 | Back alignment and structure |
|---|
Score = 653 bits (1686), Expect = 0.0
Identities = 120/443 (27%), Positives = 209/443 (47%), Gaps = 25/443 (5%)
Query: 23 EGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81
+ + + + GW+ +R Q S+ F + DG+ +Q ++ + +
Sbjct: 5 DLVKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGF--LQVLLMDKLCQTYDALT--VN 60
Query: 82 TGASIWIQGNVVPSQGSKQK---VELKVNKIVLVGKSDPS--YPIQKKRVSREFLRTKAH 136
T ++ I G + K+ EL + ++G + P + + S + + H
Sbjct: 61 TECTVEIYGAIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRH 120
Query: 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFE 196
L R A+ R+R A A + F G++ ++ P + + EG F + D+F
Sbjct: 121 LVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNL---DYFG 177
Query: 197 KPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDM 256
+ +FLT S QL ET L +V+ ++RAE S T RHLAE+ +E E F L D M
Sbjct: 178 EQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLM 237
Query: 257 ACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA 316
+ V +L + + I ER F+++ Y DAI+ L +
Sbjct: 238 EKIEELVCDTVDRLLADE--EAKKLLEHINPKF-----QPPERPFLRMEYKDAIKWLQEH 290
Query: 317 --KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAA 373
+ +F +G D+ ER++T+ P++++ +P EIKAFYM+++ D +
Sbjct: 291 NVENEFGNTFTYGEDIAEAAERFMTDTI--NKPILLNRFPSEIKAFYMQRDAQDNTLTES 348
Query: 374 MDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFE 433
+D+L+P +GE++GGS R + + L ++++ Y+WYLD R YG+ PH G+GLG E
Sbjct: 349 VDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLE 408
Query: 434 RLVQFATGVENIRDAIPFPRTPG 456
R + + T +IRD +PR G
Sbjct: 409 RFICWLTNTNHIRDVCLYPRFVG 431
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Length = 429 | Back alignment and structure |
|---|
Score = 559 bits (1442), Expect = 0.0
Identities = 124/454 (27%), Positives = 209/454 (46%), Gaps = 30/454 (6%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD 68
+ I DV + G ++ AGWV LR FI + D + L Q V+ +
Sbjct: 2 YRSHFIADVTP------EYDGKEVIWAGWVHLLRDLGGKKFIILRDKTGL--GQVVVDKN 53
Query: 69 AEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ---KKR 125
+ + + +T + I ++G V + + + +EL +I L+ K+ P+ K +
Sbjct: 54 SSAFGISQE--LTQESVIQVRGIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVK 111
Query: 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGE 185
+ + L R AV ++++ A + + GFI I +P I AS EG +
Sbjct: 112 ADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQ 171
Query: 186 QFCVTTLDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEP 245
F + +F K AFL S QL E A + V+ P +RAE S+T HLAEF ++
Sbjct: 172 LF---PVIYFGKEAFLAQSPQLYKELMAGVVERVFEVAPAWRAEESDTPFHLAEFISMDV 228
Query: 246 ELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLS 305
E+AFAD D M L +V+ I + KE++ N + + +L
Sbjct: 229 EMAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPPE---------VKIPIKRLK 279
Query: 306 YTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN 365
YT+AIE+L + +G D+ + R L EE + D+P + + FY +
Sbjct: 280 YTEAIEILRSKGYNIK----FGDDIGTPELRILNEE-LKEDLYFIVDWPSDARPFYTKSK 334
Query: 366 DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPH 425
+ ++ L+ + E++ GS R + E LE L + L +S+ ++L YG PH
Sbjct: 335 SENPELSESFDLIYKFLEIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWFDYGMPPH 394
Query: 426 AGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459
AGFG+G RL+ TG++++++ +PFPR +
Sbjct: 395 AGFGMGLARLMVMLTGIQSVKEIVPFPRDKKRLT 428
|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Length = 438 | Back alignment and structure |
|---|
Score = 556 bits (1436), Expect = 0.0
Identities = 129/444 (29%), Positives = 212/444 (47%), Gaps = 29/444 (6%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKS-GLITTGA 84
+ G + VAGWV ++ + F+ + D + +Q + K + +
Sbjct: 13 ELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGI--VQITAPKKKVDPELFKLIPKLRSED 70
Query: 85 SIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ---KKRVSREFLRTKAHLRPRT 141
+ ++G V + +K E+ KIV++ +++ P+ K + + + R
Sbjct: 71 VVAVEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRR 130
Query: 142 NTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFL 201
A+ ++R+++ A FF ENGFI I +P I A+ EG E F + +FE+ AFL
Sbjct: 131 PEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELF---PMKYFEEDAFL 187
Query: 202 TVSGQLNAET-YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF-ADLKDDMACA 259
S QL + A+ L VY P FRAE NT+RHL E W I+ E+AF D ++ M+
Sbjct: 188 AQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFL 247
Query: 260 TAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKK 319
+ + + Y+ ++ +++D N +E+ + F ++SY A+E+L K+
Sbjct: 248 ERLVAHAINYVREHNAKELDILNFELEEP---------KLPFPRVSYDKALEILGDLGKE 298
Query: 320 FEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFY-MRQNDDGRTVAAMD 375
WG D+ +E ER L + E + YP E K FY M+ ++ A D
Sbjct: 299 IP----WGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFD 354
Query: 376 MLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERL 435
+ R E+ G QRE R + L ++ E LN +S+ +YL YG PH GFGLG ERL
Sbjct: 355 LEY-RGVEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERL 413
Query: 436 VQFATGVENIRDAIPFPRTPGSVE 459
++ + NIR+ I FPR +
Sbjct: 414 IKQMLDLPNIREVILFPRDRRRLT 437
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Length = 422 | Back alignment and structure |
|---|
Score = 514 bits (1325), Expect = 0.0
Identities = 111/457 (24%), Positives = 200/457 (43%), Gaps = 45/457 (9%)
Query: 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE 70
++ + D+K VG + + G++ R + F+ + D S + +Q V
Sbjct: 2 RVLVRDLK-------AHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGV--VQVVTGGLKL 52
Query: 71 GYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ----KKRV 126
+++ ++G VV + + +E++ ++ ++ + P++ + R
Sbjct: 53 ---------PLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRA 103
Query: 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ 186
+ + L ++ R A +V+ AL ++ F I +P + + EG
Sbjct: 104 NPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGL 163
Query: 187 FCVTTLDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPE 246
F +D+FEK A+L S QL + VY P +R E +TSRHL E+ ++ E
Sbjct: 164 F---GVDYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVE 220
Query: 247 LAF-ADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLS 305
+ F AD +D M A L ++ L+ +++ +D +L+
Sbjct: 221 MGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWP---------SFPQDIPRLT 271
Query: 306 YTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFYM 362
+ +A +L K++ G DL E ER L E E +G + V+ YP+ ++ FY
Sbjct: 272 HAEAKRIL---KEELG--YPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYT 326
Query: 363 RQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS 422
+DG T + D+L + E+ G QR R E L L ++ +++ YL++ YG
Sbjct: 327 YPEEDGTT-RSFDLLFRGL-EITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGM 384
Query: 423 VPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459
PH GF +G ERL Q G+ N+R A FPR +
Sbjct: 385 PPHGGFAIGAERLTQKLLGLPNVRYARAFPRDRHRLT 421
|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Length = 294 | Back alignment and structure |
|---|
Score = 483 bits (1245), Expect = e-172
Identities = 74/332 (22%), Positives = 130/332 (39%), Gaps = 52/332 (15%)
Query: 135 AHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITA----SDCEGAGEQFCVT 190
+ + ++ + FF + GF W+ II+ + AGE
Sbjct: 2 NAVEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPA 61
Query: 191 TLDFFEKPAFLTVSGQLNAET-YATALSNVYTFGPTFRAEN--SNTSRHLAEFWMIEPEL 247
++ + LT S L+ + A L ++ P R E+ + RH EF ++ E+
Sbjct: 62 EVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEV 121
Query: 248 AFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYT 307
A ++D M + + R + + F Y+
Sbjct: 122 ERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTK-----------------RFEVFEYS 164
Query: 308 DAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD 367
+ +E ++G D ++ E P + + P+E FY R+ D
Sbjct: 165 EVLE-------------EFGSDEKASQEM--------EEPFWIINIPRE---FYDREVDG 200
Query: 368 GRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSV-PH 425
D+++P GE+ G +RE E + ++ + LN DS+ YL++ G + P
Sbjct: 201 --FWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPS 258
Query: 426 AGFGLGFERLVQFATGVENIRDAIPFPRTPGS 457
AG G+G ERLV+F G ++I + PFPR PG
Sbjct: 259 AGAGIGVERLVRFIVGAKHIAEVQPFPRIPGI 290
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Length = 487 | Back alignment and structure |
|---|
Score = 473 bits (1219), Expect = e-165
Identities = 110/483 (22%), Positives = 206/483 (42%), Gaps = 49/483 (10%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTS 67
+K++K VD+ + + ++ V R Q ++ F+ + + L +Q ++ +
Sbjct: 21 QKRVKFVDLDEAKDSDKE-----VLFRARVHNTRQQGATLAFLTLRQQASL--IQGLVKA 73
Query: 68 DAEGY---DQVKS-GLITTGASIWIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPS 118
+ EG + VK G + + + ++G V + Q +E+ + KI + ++ +
Sbjct: 74 NKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEA 133
Query: 119 YPIQKKRVSR---------------EFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQ 163
PI + SR + + RT T A+ R++ + ++
Sbjct: 134 LPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLA 193
Query: 164 ENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETYATA-LSNVYTF 222
F + +P + + EG F + +F+ A+L S Q N + A VY
Sbjct: 194 TKKFTEVHTPKLLGAPSEGGSSVF---EVTYFKGKAYLAQSPQFNKQQLIVADFERVYEI 250
Query: 223 GPTFRAENSNTSRHLAEFWMIEPELAFADLKDD-MACATAYLQYVVRYILDNCKEDMDFF 281
GP FRAENSNT RH+ EF ++ E+AF + + + + ++ + +++
Sbjct: 251 GPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELV 310
Query: 282 NTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE- 340
++ + V+L+Y + IE+L A K+ DL +E+E++L +
Sbjct: 311 RKQYP---VEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIG----DFEDLSTENEKFLGKL 363
Query: 341 --EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLE 398
+ + I+ +P EI+ FY + + R E++ G+QR L+
Sbjct: 364 VRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQ 423
Query: 399 GRLDELKLNRDS--YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 456
R+ L+ + Y D YG PHAG G+G ER+V F ++NIR A FPR P
Sbjct: 424 ERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPRDPK 483
Query: 457 SVE 459
+
Sbjct: 484 RLR 486
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Length = 548 | Back alignment and structure |
|---|
Score = 419 bits (1079), Expect = e-143
Identities = 90/376 (23%), Positives = 153/376 (40%), Gaps = 20/376 (5%)
Query: 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVAR 149
+ K + + + + + +VS++ L RT T A+ R
Sbjct: 186 AKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFR 245
Query: 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNA 209
+++A +F F+ I +P + EG F + +F++ A+L S QL
Sbjct: 246 IQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIF---EVKYFDRKAYLAQSPQLYK 302
Query: 210 ETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDD-MACATAYLQYVV 267
+ V+ GP FRAENSNT RHL EF ++ E+ + + + ++
Sbjct: 303 QMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIF 362
Query: 268 RYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWG 327
I +++ + R F++L+Y +AIE+L + +
Sbjct: 363 DEIPKRFPDELKVIRKQYPF------EDLIYRPFLRLTYKEAIEMLRASGETIG----DY 412
Query: 328 CDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGE 383
D + E L E + I+ +P I+ FY M DD + D+ V E
Sbjct: 413 DDFTTPQEVKLGELIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVFVRG-QE 471
Query: 384 LIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVE 443
+ G+QR E+L R E ++ + Y++ +GS PHAG G+G ER+ G+
Sbjct: 472 ITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIESFRFGSWPHAGCGIGLERITMLYLGIP 531
Query: 444 NIRDAIPFPRTPGSVE 459
NIR FPR P +
Sbjct: 532 NIRKVTLFPRDPIRLN 547
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Length = 580 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 420 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 454
YG+ PH G G +RL+ TG +IR+ I FP+
Sbjct: 517 YGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKN 551
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Length = 580 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 6e-05
Identities = 35/169 (20%), Positives = 69/169 (40%), Gaps = 17/169 (10%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG +V+ GWV R + F+++ D L +Q V + Y + + +
Sbjct: 15 VGEEVVLEGWVNRRRDLGGLIFLDLRDREGL--VQLVAHPASPAYATAER--VRPEWVVR 70
Query: 88 IQGNVVP-SQGSKQ----KVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAHLR--- 138
+G V + + + +VE++++ + ++ ++ P +P+ E LR
Sbjct: 71 AKGLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKY 130
Query: 139 ----PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
R R+R+ + A F GF+ + +P +T S EGA
Sbjct: 131 RYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGA 179
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Length = 585 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 420 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 454
YG+ PHAG G +RL TG +NIRD I FP+T
Sbjct: 523 YGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKT 557
|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Length = 345 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 45/260 (17%), Positives = 77/260 (29%), Gaps = 56/260 (21%)
Query: 219 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK-ED 277
V+ +FR E H EF M+E D+ M L ++ +LD E
Sbjct: 112 VFQLCRSFRNEEMGR-YHNPEFTMLEWYRPHYDMYRLMN-EVDDL---LQQVLDCPAAES 166
Query: 278 MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCD-LQSEH-E 335
+ + ++ ID + T E+ K + D L
Sbjct: 167 LSYQQAFLRYLEID---------PLSADKTQLREVAAKLDLSNVADTEEDRDTLLQLLFT 217
Query: 336 RYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGE----LIGGS--- 388
+ P V +P + +D R+ E G
Sbjct: 218 FGVEPNIGKEKPTFVYHFPASQASLAQISTED-----------HRVAERFEVYYKGIELA 266
Query: 389 -----------QREERLE-----YLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGF 432
Q++ R E L + ++++ ++ G +G LG
Sbjct: 267 NGFHELTDAREQQQ-RFEQDNRKRAARGLPQHPIDQN----LIEALKVGMPDCSGVALGV 321
Query: 433 ERLVQFATGVENIRDAIPFP 452
+RLV A G E + + I F
Sbjct: 322 DRLVMLALGAETLAEVIAFS 341
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 4e-07
Identities = 75/485 (15%), Positives = 125/485 (25%), Gaps = 189/485 (38%)
Query: 94 PSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE----FLRTKA-HLRPRTNTF---- 144
PS ++ +E + +++ +D K VSR LR LRP N
Sbjct: 105 PSMMTRMYIE-QRDRL----YNDNQ-VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 145 -GA-----VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKP 198
G+ V L+Y + W++ C + E
Sbjct: 159 LGSGKTWVALDV--CLSYKVQCKM-DFKIFWLN-----------LKN--CNSPETVLE-- 200
Query: 199 AFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMAC 258
L L Y P + + + ++S +L ++ ++
Sbjct: 201 -------MLQK------LL--YQIDPNWTSRSDHSSN---------IKLRIHSIQAELR- 235
Query: 259 ATAYLQYVVRY-----ILDNC--KEDMDFFN-------TWIEKGIIDRLSTVAERDFVQL 304
L Y +L N + + FN T K + D LS +
Sbjct: 236 ---RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT---HI 289
Query: 305 SYTDAIELLIKAKKKFEFLVKW-GCDLQSEHERYLTEEAFGGCPVIVS------------ 351
S L + K L+K+ C Q L E P +S
Sbjct: 290 SLDHHSMTLTPDEVK-SLLLKYLDCRPQD-----LPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 352 -DY---------------------PKEIKAFYMR----QND-------------DGRTVA 372
D P E + + R D
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 373 AMDMLVPRIGELIGGS----QREERLEYLEGRLDELK--------LNR------------ 408
M ++ +L S Q +E + ELK L+R
Sbjct: 404 VMVVVN----KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 409 ----------DSYW-WYLDLRHYGSVPHAGFGLGFERL---VQFATGVEN-IRDAIPFPR 453
D Y+ ++ H ++ H F + +F +E IR
Sbjct: 460 DSDDLIPPYLDQYFYSHIG-HHLKNIEHPERMTLFRMVFLDFRF---LEQKIRHDSTAWN 515
Query: 454 TPGSV 458
GS+
Sbjct: 516 ASGSI 520
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 3e-05
Identities = 66/478 (13%), Positives = 136/478 (28%), Gaps = 133/478 (27%)
Query: 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDG------SCLSNMQCVMTSDAEGYDQVKSGLI 80
R+ + + + LR +V DG + ++ C + I
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLI----DGVLGSGKTWVALDVC----LSYKVQCKMDFKI 184
Query: 81 TTGASIWIQGNVVPSQGSKQKVELKVNKIV-LVGKSDPSYPIQKKRVSREFLRTKAHLRP 139
W+ + + E + + L+ + DP++ + S LR + ++
Sbjct: 185 -----FWL------NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS-IQA 232
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASD--CEGAGEQFCVTTLDFFEK 197
N L + + ++ A + C + +TT
Sbjct: 233 ELRRLLKSKPYENCLLVLLN--------VQ-NAKAWNAFNLSC-----KILLTTRF---- 274
Query: 198 PAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIE----PELA----- 248
V+ L+A T + ++ T L ++ P
Sbjct: 275 ---KQVTDFLSAATTTHISLDHHSMTLT----PDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 249 -----FADLKDDMACATAYLQYV----VRYILDNCKEDMD-------F-----F--NTWI 285
A+ D ++V + I+++ ++ F F + I
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 286 EKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE-HERYLTEEAFG 344
++ + + + +D + ++ K K + K + YL +
Sbjct: 388 PTILLSLI-------WFDVIKSDVMVVVNKLHKYS-LVEKQPKESTISIPSIYLELK--- 436
Query: 345 GCPV---------IVSDYPKEIKAFYMRQNDDGRTVAAMDM-LVPRIGELIGGSQREERL 394
+ IV Y K F + D +D IG + + ER+
Sbjct: 437 -VKLENEYALHRSIVDHY-NIPKTF----DSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 395 E-----YLEGRLDELKLNRDSYWWY---------LDLRHYGS--VPHAGFGLGFERLV 436
+L+ R E K+ DS W L+ Y + +ERLV
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK---YERLV 545
|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Length = 493 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 6e-07
Identities = 68/276 (24%), Positives = 102/276 (36%), Gaps = 74/276 (26%)
Query: 219 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 275
VY G FR E +T RH EF M+E A+AD +D M + ++ +L K
Sbjct: 245 VYEIGRVFRNEGIST-RHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTKIQY 303
Query: 276 --EDMDFFNTWIEKGIIDRLSTVAERDF-VQLSYTDAIELLIKAKKKFEFLVKWGCDLQS 332
+D W ++D + DF Q+S +A EL + + + +G
Sbjct: 304 GEHLVDLTPEWRRLHMVDAIKEYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFG----- 358
Query: 333 EHERYLTEEAFGGC-------PVIVSDYPKEIK--AFYMRQNDDGRTVAAMDMLVPRIGE 383
++ E F P + +P EI A ++N D PR +
Sbjct: 359 ----HIVNEFFEQKVEDKLIQPTFIYGHPVEISPLA---KKNPDD----------PRFTD 401
Query: 384 ----LIGGS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLD 416
I G QR+ E L+ R +DE D +L+
Sbjct: 402 RFELFIVGREHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDE-----D----FLE 452
Query: 417 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 452
YG P G G+G +RLV T +IRD + FP
Sbjct: 453 ALEYGMPPTGGLGIGVDRLVMLLTNSPSIRDVLLFP 488
|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Length = 529 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 54/276 (19%), Positives = 81/276 (29%), Gaps = 69/276 (25%)
Query: 219 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 275
V+ FR E + RH EF M+E A+ D + M ++ L
Sbjct: 275 VFEINRNFRNEGVSP-RHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTATIQY 333
Query: 276 --EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKK-FEFLVKWGCDLQS 332
++D + I + A +D L + K+ + +
Sbjct: 334 QGRELDLAQPFHRLTITQAIQKYAPSYTDGQL-SDDAFLRSELKRLGVDVTQPAFLNAGI 392
Query: 333 EHERYLTEEAFGGC-------PVIVSDYPKEIK--AFYMRQNDDGRTVAAMDMLVPRIGE 383
L F P + DYP E+ A R++D I E
Sbjct: 393 GA---LQLALFEETAEAQLWEPTFIIDYPIEVSPLA---RESDTV----------AGITE 436
Query: 384 ----LIGGS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLD 416
I G Q + +E + D D Y+
Sbjct: 437 RFELFITGREIANGFSELNDPEDQAARFKKQVEQKDAGDEEAMFFDA-----D----YIR 487
Query: 417 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 452
YG P G G+G +RLV T IRD + FP
Sbjct: 488 ALEYGMPPTGGCGIGIDRLVMLLTDSPTIRDVLLFP 523
|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Length = 504 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 4e-06
Identities = 60/271 (22%), Positives = 93/271 (34%), Gaps = 63/271 (23%)
Query: 219 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 275
V+ FR E + RH EF M+E +A+AD D + + + + + +L K
Sbjct: 254 VFEINRNFRNEGISV-RHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTY 312
Query: 276 --EDMDFFNTWIEKGIIDRLSTVA-ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQS 332
DF + + + + + E D L DA + L + WG
Sbjct: 313 GEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAE-SIGITVEKSWGL---- 367
Query: 333 EHERYLTEEAFGGC-------PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGEL- 384
+ E F P +++YP E+ R + + + R E
Sbjct: 368 ---GRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPE-------ITDRF-EFF 416
Query: 385 IGGS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLDLRHYG 421
IGG Q E E + + DE D Y+ YG
Sbjct: 417 IGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDE-----D----YVTALEYG 467
Query: 422 SVPHAGFGLGFERLVQFATGVENIRDAIPFP 452
P AG G+G +R++ T IRD I FP
Sbjct: 468 LPPTAGLGIGIDRMIMLFTNSHTIRDVILFP 498
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 460 | |||
| 3nem_A | 438 | Aspartyl-tRNA synthetase; rossmann fold, OB fold, | 100.0 | |
| 3m4p_A | 456 | Ehasnrs, asparaginyl-tRNA synthetase, putative; am | 100.0 | |
| 2xgt_A | 435 | Asparaginyl-tRNA synthetase, cytoplasmic; ligase, | 100.0 | |
| 1wyd_A | 429 | Hypothetical aspartyl-tRNA synthetase; archaea, LI | 100.0 | |
| 3i7f_A | 548 | Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi | 100.0 | |
| 1x54_A | 434 | Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe | 100.0 | |
| 1n9w_A | 422 | Aspartyl-tRNA synthetase 2; biosynthetic protein; | 100.0 | |
| 3bju_A | 521 | Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 100.0 | |
| 4ex5_A | 529 | Lysine--tRNA ligase; structural genomics, niaid, n | 100.0 | |
| 1e1o_A | 504 | Lysyl-tRNA synthetase, heat inducible; ligase, ami | 100.0 | |
| 3a74_A | 493 | Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, | 100.0 | |
| 1eov_A | 487 | ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy | 100.0 | |
| 1l0w_A | 580 | Aspartyl-tRNA synthetase; space-grown crystal, dim | 100.0 | |
| 1c0a_A | 585 | Aspartyl tRNA synthetase; protein-RNA complex, lig | 100.0 | |
| 4ah6_A | 617 | Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo | 100.0 | |
| 3a5y_A | 345 | GENX, putative lysyl-tRNA synthetase; aminoacyl-tR | 100.0 | |
| 1nnh_A | 294 | Asparaginyl-tRNA synthetase-related peptide; struc | 100.0 | |
| 12as_A | 330 | Asparagine synthetase; ligase, nitrogen fixation; | 99.92 | |
| 3qtc_A | 290 | Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet | 99.91 | |
| 3dsq_A | 288 | Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t | 99.72 | |
| 1b7y_A | 350 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 99.61 | |
| 2rhq_A | 294 | Phenylalanyl-tRNA synthetase alpha chain; heterote | 99.51 | |
| 3pco_A | 327 | Phenylalanyl-tRNA synthetase, alpha subunit; amino | 99.39 | |
| 3l4g_A | 508 | Phenylalanyl-tRNA synthetase alpha chain; aminoacy | 99.13 | |
| 3cmq_A | 415 | Phenylalanyl-tRNA synthetase, mitochondrial; class | 98.52 | |
| 2du3_A | 534 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 98.4 | |
| 2du7_A | 549 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 98.31 | |
| 2i4l_A | 458 | Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud | 98.2 | |
| 1evl_A | 401 | Threonyl-tRNA synthetase; amino acid recognition, | 98.16 | |
| 2dq3_A | 425 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 98.15 | |
| 1z7m_A | 344 | ATP phosphoribosyltransferase regulatory subunit; | 98.11 | |
| 3uh0_A | 460 | Threonyl-tRNA synthetase, mitochondrial; threonine | 98.07 | |
| 2odr_B | 648 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 98.04 | |
| 2odr_A | 665 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 98.03 | |
| 1qe0_A | 420 | Histidyl-tRNA synthetase; class II tRNA synthetase | 98.03 | |
| 2odr_D | 685 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 98.02 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 98.01 | |
| 2odr_C | 701 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 97.99 | |
| 1hc7_A | 477 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.98 | |
| 2j3l_A | 572 | Prolyl-tRNA synthetase; class II aminoacyl- T synt | 97.97 | |
| 1wu7_A | 434 | Histidyl-tRNA synthetase; ligase, structural genom | 97.96 | |
| 3lss_A | 484 | Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.92 | |
| 1h4v_B | 421 | Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA | 97.9 | |
| 2dq0_A | 455 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 97.89 | |
| 1nj8_A | 459 | Proline-tRNA synthetase, proline--tRNA ligase; cla | 97.87 | |
| 3qne_A | 485 | Seryl-tRNA synthetase, cytoplasmic; amino acid bio | 97.86 | |
| 1ses_A | 421 | Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A | 97.86 | |
| 1htt_A | 423 | Histidyl-tRNA synthetase; complex (tRNA synthetase | 97.86 | |
| 4e51_A | 467 | Histidine--tRNA ligase; seattle structural genomic | 97.84 | |
| 1nj1_A | 501 | PROR, proline-tRNA synthetase, proline--tRNA ligas | 97.83 | |
| 3rac_A | 373 | Histidine-tRNA ligase; structural genomics, PSI-bi | 97.82 | |
| 3od1_A | 400 | ATP phosphoribosyltransferase regulatory subunit; | 97.8 | |
| 3net_A | 465 | Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas | 97.8 | |
| 3lc0_A | 456 | Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t | 97.69 | |
| 3ial_A | 518 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.68 | |
| 4hvc_A | 519 | Bifunctional glutamate/proline--tRNA ligase; ligas | 97.65 | |
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 97.64 | |
| 1wle_A | 501 | Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo | 97.64 | |
| 4g84_A | 464 | Histidine--tRNA ligase, cytoplasmic; synthetase; 2 | 97.63 | |
| 3a32_A | 471 | Probable threonyl-tRNA synthetase 1; aeropyrum per | 97.61 | |
| 3err_A | 536 | Fusion protein of microtubule binding domain from | 97.55 | |
| 3vbb_A | 522 | Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l | 97.55 | |
| 4g85_A | 517 | Histidine-tRNA ligase, cytoplasmic; synthetase; 3. | 97.49 | |
| 2cja_A | 522 | Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE | 97.37 | |
| 1ati_A | 505 | Glycyl-tRNA synthetase; protein biosynthesis, liga | 97.21 | |
| 1usy_A | 275 | ATP phosphoribosyltransferase regulatory subunit; | 97.06 | |
| 3mf2_A | 346 | BLL0957 protein; aminoacyl-tRNA synthetase, seryl- | 97.02 | |
| 3ikl_A | 459 | DNA polymerase subunit gamma-2, mitochondrial; tra | 96.98 | |
| 2zt5_A | 693 | Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP | 96.77 | |
| 3e0e_A | 97 | Replication protein A; structural genomics, PSI-2, | 96.74 | |
| 3dm3_A | 105 | Replication factor A; probably plays AN essential | 96.7 | |
| 3kdf_D | 132 | Replication protein A 32 kDa subunit; wheat GERM c | 96.6 | |
| 3kf6_A | 159 | Protein STN1; OB fold, chromosomal protein, DNA-bi | 96.52 | |
| 4gop_B | 136 | Putative uncharacterized protein; OB fold, ssDNA b | 96.51 | |
| 1g5h_A | 454 | Mitochondrial DNA polymerase accessory subunit; in | 96.4 | |
| 2k50_A | 115 | Replication factor A related protein; uncharacteri | 95.95 | |
| 3l4g_B | 589 | Phenylalanyl-tRNA synthetase beta chain; aminoacyl | 95.75 | |
| 2rhq_B | 795 | Phenylalanyl-tRNA synthetase beta chain; heterotet | 95.72 | |
| 1nnx_A | 109 | Protein YGIW; structural genomics, hypothetical pr | 95.68 | |
| 3ig2_A | 213 | Phenylalanyl-tRNA synthetase beta chain; phers, MC | 95.38 | |
| 3au7_A | 402 | TIAS, putative uncharacterized protein; ATP hydrol | 94.99 | |
| 2pi2_A | 270 | Replication protein A 32 kDa subunit; FULL-length | 94.95 | |
| 2kbn_A | 109 | Conserved protein; nucleic acid binding protein, b | 94.4 | |
| 3ica_A | 213 | Phenylalanyl-tRNA synthetase beta chain; APC61692. | 94.01 | |
| 2k75_A | 106 | Uncharacterized protein TA0387; closed beta barrel | 94.0 | |
| 3kf8_A | 220 | Protein STN1; OB fold; 2.40A {Candida tropicalis m | 93.52 | |
| 1o7i_A | 119 | SSB, SSO2364, single stranded DNA binding protein; | 92.79 | |
| 3kdf_A | 121 | Replication protein A 14 kDa subunit; wheat GERM c | 92.73 | |
| 1b7y_B | 785 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 91.22 | |
| 1ynx_A | 114 | Replication factor-A protein 1; canonical OB fold, | 90.97 | |
| 4gop_A | 114 | Putative uncharacterized protein; OB fold, ssDNA b | 89.76 | |
| 3fhw_A | 115 | Primosomal replication protein N; PRIB BPR162 X-RA | 88.95 | |
| 2hpi_A | 1220 | DNA polymerase III alpha subunit; POL-beta-like nu | 87.02 | |
| 2pi2_E | 142 | Replication protein A 14 kDa subunit; FULL-length | 85.49 | |
| 1j6q_A | 136 | Cytochrome C maturation protein E; all-beta protei | 82.48 | |
| 1sr3_A | 136 | APO-CCME; OB fold, beta barrel, flexible C-termina | 82.04 | |
| 1jmc_A | 246 | Protein (replication protein A (RPA)); human ssDNA | 80.19 |
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-106 Score=831.75 Aligned_cols=424 Identities=29% Similarity=0.494 Sum_probs=383.4
Q ss_pred cceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc---chhhHhccCCCCCcE
Q 012612 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVKSGLITTGAS 85 (460)
Q Consensus 9 ~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~---~~~~~~~~~l~~g~~ 85 (460)
.++|+|+||.+. +.|+.|+|+|||+++|.+||++|++|||++|. ||||++++.. .|+.+++ |+.||+
T Consensus 2 ~rt~~~~~l~~~------~~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~~~~--l~~~~~ 71 (438)
T 3nem_A 2 YRTHYSSEITEE------LNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGI--VQITAPKKKVDPELFKLIPK--LRSEDV 71 (438)
T ss_dssp CCSCCGGGCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEEETTTSCHHHHHHGGG--CCTTCE
T ss_pred ceEEEHHHcchh------cCCCEEEEEEEEEEEecCCCeEEEEEEECCee--EEEEEeCCcCCHHHHHHHhc--CCCCCE
Confidence 478999999874 67999999999999999999999999999974 9999997642 3666777 999999
Q ss_pred EEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccc---cChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhh
Q 012612 86 IWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFF 162 (460)
Q Consensus 86 V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~---~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff 162 (460)
|.|+|+|+++++.++++||.++++++||+|..++|++.+. ++.+.++++||||+|++.++++|++||+|++++|+||
T Consensus 72 V~V~G~v~~~~~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~Rs~i~~~iR~f~ 151 (438)
T 3nem_A 72 VAVEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFF 151 (438)
T ss_dssp EEEEEEEEECTTSTTSEEEEEEEEEEEECBCSSCSSCTTSSSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCCCCCcEEEEEEEEEEEecCCCCCCCCccccccCCHHHHhhchHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887779999999999999998778887654 6788888999999999999999999999999999999
Q ss_pred hhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCCCCCCCCCCccc
Q 012612 163 QENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFW 241 (460)
Q Consensus 163 ~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt 241 (460)
.++||+||+||+|+++++||+++.|++ +|++.++||+||||+||| ++++|++||||||||||||+++++||+||||
T Consensus 152 ~~~gF~EVeTPiL~~~~~eg~~~~f~~---~~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~t~RH~pEFt 228 (438)
T 3nem_A 152 HENGFIEIHTPKIIATATEGGTELFPM---KYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAW 228 (438)
T ss_dssp HHTTCEECCCCSEESSCSSCSSSCCEE---EETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCCTTCCSEEE
T ss_pred HHCCcEEEeCCEEecCCCCCCccceeE---eeCCccEEEecChHHHHHHHHhcCCCceEEEcceEECCCCCCccccccee
Confidence 999999999999999999999999988 689999999999999998 6779999999999999999999899999999
Q ss_pred eeeeeecCCC-HHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHcccc
Q 012612 242 MIEPELAFAD-LKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKF 320 (460)
Q Consensus 242 ~lE~e~~~~~-~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~ 320 (460)
|||||++|.| ++|+|+++|+||+++++.+.+.+..++++.+.. + ..++.||+|+||.||++++++.|.+
T Consensus 229 ~le~e~a~~~~~~d~m~~~E~li~~~~~~v~~~~~~~l~~~~~~--------l-~~~~~pf~rity~eai~~l~~~g~~- 298 (438)
T 3nem_A 229 SIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFE--------L-EEPKLPFPRVSYDKALEILGDLGKE- 298 (438)
T ss_dssp EEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCC--------C-CCCCSSCCEEEHHHHHHHHHHTTCC-
T ss_pred eeeeeeccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHhhcccc--------c-ccCCCCceEEEHHHHHHHHHHcCCC-
Confidence 9999999999 999999999999999999988776555544331 1 1245689999999999999987754
Q ss_pred ccccccccccchhhhcccccccc---cCccEEEEeCCCcCccccccccCC-ccceeeeecccCCceeeecHHHhhhhHHH
Q 012612 321 EFLVKWGCDLQSEHERYLTEEAF---GGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLEY 396 (460)
Q Consensus 321 ~~~~~~~~~l~~~~e~~l~~~~~---~~~p~~I~~fP~~~~pf~~~~~~~-~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~ 396 (460)
..||.|++..+|++|.+.+. ..+|+||+|||.+++|||++.+++ +++++||||+++| +||+||++|+||+++
T Consensus 299 ---~~~~~dl~~~~e~~l~~~~~~~~~~~p~fi~~yP~~~~pfy~k~~~~~p~~~~rfdL~~~G-~Ei~nG~~el~d~~~ 374 (438)
T 3nem_A 299 ---IPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYRG-VEISSGGQREHRHDI 374 (438)
T ss_dssp ---CCTTSCCCHHHHHHHHHHHHHHHCCSEEEEESCBGGGSCTTBCBCTTSTTBBSEEEEEETT-EEEEEEEEBCCCHHH
T ss_pred ---CCCCCCCCcHHHHHHHHHhhhhcCCCCEEEECCchhhCccccccCCCCCCceEEEEEEECC-EEEEeCeeecCCHHH
Confidence 46889999999998876431 138999999999999998877654 5789999999999 699999999999999
Q ss_pred HHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCcc
Q 012612 397 LEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459 (460)
Q Consensus 397 ~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~ 459 (460)
|++++++.|++++.++|||+|++||||||||||||+|||+|++||.+|||||++|||+++||.
T Consensus 375 l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GlGidRLvm~l~g~~~Irdvi~FPr~~~rl~ 437 (438)
T 3nem_A 375 LVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFPRDRRRLT 437 (438)
T ss_dssp HHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSCCCSSCCC
T ss_pred HHHHHHHcCCChhHHHHHHHHHHcCCCCceEEEEhHHHHHHHHhCCCcHHHcccCCCCccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999984
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-104 Score=823.79 Aligned_cols=425 Identities=30% Similarity=0.533 Sum_probs=366.7
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCC-CeEEEEEEcCCCccceEEEEeCCc-cchhhHhccCCCCCcEEE
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIW 87 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g-~~~Fv~lrD~~~~~~iQvv~~~~~-~~~~~~~~~~l~~g~~V~ 87 (460)
.+++|+|+. ++.|+.|+|+|||+++|.+| +++|++|||++|. ||||++.+. .....+.+ |+.||+|.
T Consensus 18 ~~~~i~~~~-------~~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~~--l~~g~~V~ 86 (456)
T 3m4p_A 18 IVCNIRDAA-------GLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGY--CQCVIFGKELCEPEKVKL--LTRECSLE 86 (456)
T ss_dssp CCEECCSTT-------CCCSSEEEEEEEEEEEECCSSSEEEEEEECSSCE--EEEEEESTTTTCHHHHTT--CCTTCEEE
T ss_pred eEEEhhhhh-------hcCCCEEEEEEEEEEEecCCCceEEEEEEeCCcc--EEEEEecccchhhHHhhc--CCCccEEE
Confidence 457888883 36899999999999999995 6999999999975 999999743 22223456 99999999
Q ss_pred EEeeEeecCCCC--------ceEEEEEeEEEEEecCCCCCCC-CccccChhhhhccccccCCChhhhHHHHHHHHHHHHH
Q 012612 88 IQGNVVPSQGSK--------QKVELKVNKIVLVGKSDPSYPI-QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYAT 158 (460)
Q Consensus 88 V~G~v~~~~~~~--------~~~El~~~~i~ils~~~~~~p~-~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~i 158 (460)
|+|+|++++.+. |++||.|++++|||+|+.+.|- ..+.++.++++++||||+|++.++++|++||+|+++|
T Consensus 87 V~G~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a~~~~~~~~~~~~~~e~r~~~R~LdlR~~~~~~~lr~Rs~i~~~i 166 (456)
T 3m4p_A 87 ITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYF 166 (456)
T ss_dssp EEEEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECCCGGGTTTSCTTCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred EEeEEEecCCcccCcccCCCCcEEEEEeEEEEEecCCCCCcccccccCCHHHHhhchHHhhhcHHHHHHHHHHHHHHHHH
Confidence 999999877532 7899999999999999743221 1234678888899999999999999999999999999
Q ss_pred HHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHHHHhcCCCceEEEecccccCCCCCCCCCC
Q 012612 159 HKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLA 238 (460)
Q Consensus 159 R~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~l~~~g~~rvfeI~~~FR~E~~~~~rHl~ 238 (460)
|+||.++||+||+||+|+++++||++++|.+ +||++++||+||||||||++++|++||||||||||||+++++||||
T Consensus 167 R~ff~~~gF~EVeTPiL~~s~~eGg~~~f~~---~~~~~~~~L~~SpqL~lq~l~~g~~rVyeig~~FR~E~~~t~rH~p 243 (456)
T 3m4p_A 167 RKYYHDNHFTEIQPPTIVKTQCEGGSTLFKL---QYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQSRTVRHLA 243 (456)
T ss_dssp HHHHHHTTCEECCCCSEEC------CCCCEE---EETTEEEEECSCCHHHHHTTHHHHSSEEEEEEEECCCSCCCSSCCS
T ss_pred HHHHHhCCCEEEeCCeeecCCCCCccccccc---cccCCCcccccCHHHHHHHHHhccCcEEEEEhheecCCCCCCcchH
Confidence 9999999999999999999999999999987 8999999999999999996556899999999999999999999999
Q ss_pred ccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHcc
Q 012612 239 EFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKK 318 (460)
Q Consensus 239 EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~ 318 (460)
|||||||||+|+|++|+|+++|+||+++++.+.+++...+..... + + .....||+|+||.||++++++.|+
T Consensus 244 EFtmlE~e~af~d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~----~----~-~~~~~pf~rity~eAi~~l~~~g~ 314 (456)
T 3m4p_A 244 EYLHLEAELPFISFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNP----H----L-KLPTRPFKRMTYADAIKYCNDHGI 314 (456)
T ss_dssp EEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT----T----C-CCCCSSCEEEEHHHHHHHHHHHTC
T ss_pred HHHHhHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCc----c----c-ccCCCCCeEeeHHHHHHHHHHcCC
Confidence 999999999999999999999999999999988765432211111 0 1 123568999999999999999886
Q ss_pred ccc-cccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCC-ccceeeeecccCCceeeecHHHhhhhHHH
Q 012612 319 KFE-FLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLEY 396 (460)
Q Consensus 319 ~~~-~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~-~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~ 396 (460)
+.+ ....||.+++.++|+++.+.+ . +|+||+|||.+++|||++.+++ +.+++||||+++|+|||+||++|+||+++
T Consensus 315 ~~~~~~~~~g~~l~~~~e~~l~~~~-~-~P~fv~~yP~~~~pfy~k~~~~dp~~~~rfdL~~~G~gEi~~G~~r~~d~~~ 392 (456)
T 3m4p_A 315 LNKDKPFEYGEDISEKPERQMTDEI-G-CPIFMIHFPSKMKAFYMSKVPGHPDLTESVDLLMPGVGEIVGGSMRIWNYDE 392 (456)
T ss_dssp CSSSSCCCTTCCCCHHHHHHHHHHH-T-SCEEEECCBGGGSCTTBCEETTEEEEECEEEEEETTTEEEEEEEEBCCCHHH
T ss_pred CccccCcchHHHHHHHHHHHHHHHh-C-ceEEEECCCchhCccccccCCCCCCeeEEEEEEeCCceEEccceeecCCHHH
Confidence 533 235789999999999998865 4 8999999999999999877654 46889999999999999999999999999
Q ss_pred HHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCcc
Q 012612 397 LEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459 (460)
Q Consensus 397 ~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~ 459 (460)
|.+++++.|+++++++|||++++||+|||||||||+|||+|++||.+|||||++|||+++||.
T Consensus 393 l~~r~~~~g~~~~~~~~yld~~~~G~pP~gG~GlGidRLvm~ltg~~~Irdvi~FPr~~~r~~ 455 (456)
T 3m4p_A 393 LMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIRKVCLYPRYLERCE 455 (456)
T ss_dssp HHHHHHTTTCCCGGGHHHHGGGTSSCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCBBTTBCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHcCCCcccEEEEcHHHHHHHHcCCccHHHeeccCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999984
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-102 Score=807.14 Aligned_cols=421 Identities=29% Similarity=0.568 Sum_probs=365.5
Q ss_pred eeccccCCccCCCCCCCCEEEEEEEEeeeccCC-CeEEEEEEcCCCccceEEEEeCCc-cchhhHhccCCCCCcEEEEEe
Q 012612 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWIQG 90 (460)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g-~~~Fv~lrD~~~~~~iQvv~~~~~-~~~~~~~~~~l~~g~~V~V~G 90 (460)
+|+|+.+ +.|+.|+|+|||+++|.+| +++|++|||++|. ||||++.+. ..|+.. + |+.||+|.|+|
T Consensus 2 ~i~~~~~-------~~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~-~--l~~~~~v~v~G 69 (435)
T 2xgt_A 2 KIRDLVK-------HRNERVCIKGWIHRMRRQGKSLMFFILRDGTGF--LQVLLMDKLCQTYDAL-T--VNTECTVEIYG 69 (435)
T ss_dssp CGGGGGG-------GTTSEEEEEEEEEEEEECTTSEEEEEEECSSCE--EEEEEEGGGGSSHHHH-H--CCTTCEEEEEE
T ss_pred chhhhhh-------cCCCEEEEEEEEEEecccCCCcEEEEEEECCce--EEEEECCcchhHHHHh-c--CCCCCEEEEEE
Confidence 4666632 6789999999999999995 7999999999975 999998543 234443 6 99999999999
Q ss_pred eEeecC---CCCceEEEEEeEEEEEecCCCC--CCCCccccChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhC
Q 012612 91 NVVPSQ---GSKQKVELKVNKIVLVGKSDPS--YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 165 (460)
Q Consensus 91 ~v~~~~---~~~~~~El~~~~i~ils~~~~~--~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~ 165 (460)
+|++++ ++++++||.++++++||++.+. +|++++.++.+.++++||||+|++.++++|++||+|++++|+||.++
T Consensus 70 ~v~~~~~~~~~~g~~El~~~~~~vl~~~~p~~~~pl~~~~~~~e~r~~~R~Ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~ 149 (435)
T 2xgt_A 70 AIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNA 149 (435)
T ss_dssp EEEECC------TTEEEEEEEEEEEECCCTTHHHHHCC--CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCcCCCCcEEEEEEEEEEeecCCCcccccccccCCCHHHHhhCeeeeecCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999977 4457899999999999986432 57777778888888999999999999999999999999999999999
Q ss_pred CceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHHHHhcCCCceEEEecccccCCCCCCCCCCccceeee
Q 012612 166 GFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEP 245 (460)
Q Consensus 166 gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~ 245 (460)
||+||+||+|++++++|++++|.+ +|+++++||+||||+|||++++|++||||||||||||+++++||+||||||||
T Consensus 150 gFlEVeTPiL~~s~~eG~~~~F~~---~~~g~~~~L~~SpqLylq~l~~g~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~ 226 (435)
T 2xgt_A 150 GYVEVAPPTLVQTQVEGGSTLFNL---DYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEA 226 (435)
T ss_dssp TCEECCCCSEESCCSSCTTSCCEE---EETTEEEEECSCSHHHHHHHHHHHCSEEEEEEEECCCSSCCTTCCSEEEEEEE
T ss_pred CCEEEECCeEeeccCCCchhceee---ccCCcccccCCChHHHHHHhhhccCceEEEecceecCCCCccccccceeEEEE
Confidence 999999999999999999999988 79999999999999999965578999999999999999999999999999999
Q ss_pred eecCCCHHHHHHHHHHHHHHHHHHHhccCccc--cccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHcccccc-
Q 012612 246 ELAFADLKDDMACATAYLQYVVRYILDNCKED--MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF- 322 (460)
Q Consensus 246 e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~--i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~- 322 (460)
||+|+|++|+|+++|+||+++++.+.+.+... ++.... .+ .....||+|+||.||++++++.++..+.
T Consensus 227 e~af~d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~--------~~-~~~~~pf~rity~ea~~~~~~~~~~~~~~ 297 (435)
T 2xgt_A 227 ECPFITLDDLMEKIEELVCDTVDRLLADEEAKKLLEHINP--------KF-QPPERPFLRMEYKDAIKWLQEHNVENEFG 297 (435)
T ss_dssp EEESCCHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHST--------TC-CCCCSSCEEEEHHHHHHHHHHTTCBCTTS
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHhccccchhhhhhccc--------cc-cccCCCceEEEHHHHHHHHHhcCCCcccc
Confidence 99999999999999999999999987654211 110000 00 0123589999999999999887654322
Q ss_pred -ccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCC-ccceeeeecccCCceeeecHHHhhhhHHHHHHH
Q 012612 323 -LVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLEYLEGR 400 (460)
Q Consensus 323 -~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~-~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~ 400 (460)
...||.+++..+|++|.+.+ . +|+||+|||.+++|||++.+++ +.++++|||++||+|||+|||+|+||+++|+++
T Consensus 298 ~~~~~g~~l~~~~e~~l~~~~-~-~p~fv~d~P~~~~~f~a~~~~~~p~~~~~fdl~~~G~~Ei~~G~~r~~d~~~q~~r 375 (435)
T 2xgt_A 298 NTFTYGEDIAEAAERFMTDTI-N-KPILLNRFPSEIKAFYMQRDAQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKA 375 (435)
T ss_dssp CBCCTTSCCCHHHHHHHHHHH-T-SCEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTTEEEEEEEEBCCCHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHhc-C-CcEEEECCChhhCcccCCCCCCCcCeEEEEEEEcCCceEEEeeeEEeCCHHHHHHH
Confidence 25688999999999988765 3 7999999999999999887664 468899999999999999999999999999999
Q ss_pred HHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCcc
Q 012612 401 LDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459 (460)
Q Consensus 401 ~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~ 459 (460)
++..|++++.++||++|++||+|||||||||+|||+|+++|.+||||||+|||++++|.
T Consensus 376 ~~~~g~~~~~~~~yl~a~~yG~pPhgG~glGiDRLvmll~g~~~Irdvi~FPr~~~~~~ 434 (435)
T 2xgt_A 376 FKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVGRCV 434 (435)
T ss_dssp HHHHTCCCGGGHHHHHHHHSSCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCCBTTBCC
T ss_pred HHHcCCCHHHHHHHHHHHhCCCCCCceEEEhHHHHHHHHcCCCcHHhEecccCCcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999985
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-102 Score=804.91 Aligned_cols=423 Identities=30% Similarity=0.477 Sum_probs=383.3
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEE
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (460)
++++++||... +.|+.|+|+|||+++|.+||++|++|||++|. ||||++++...|+.++. |+.||+|.|+
T Consensus 3 ~~~~~~~l~~~------~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~--l~~~~~v~v~ 72 (429)
T 1wyd_A 3 RSHFIADVTPE------YDGKEVIWAGWVHLLRDLGGKKFIILRDKTGL--GQVVVDKNSSAFGISQE--LTQESVIQVR 72 (429)
T ss_dssp CSSCTTTCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEECTTSTTHHHHTT--CCTTCEEEEE
T ss_pred eEEEHHHhhHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCee--EEEEEeCChHHHHHHHh--CCCCCEEEEE
Confidence 56789999763 68999999999999999999999999999975 99999876555777777 9999999999
Q ss_pred eeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccc---cChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhCC
Q 012612 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENG 166 (460)
Q Consensus 90 G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~---~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~g 166 (460)
|+|++++++++++||.|+++++||+|..++|++.++ ++.+.++++||||+|++.+++++++||+|++++|+||.++|
T Consensus 73 G~v~~~~~~~~~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~ff~~~g 152 (429)
T 1wyd_A 73 GIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEG 152 (429)
T ss_dssp EEEEECSSSGGGEEEEEEEEEEEECCCSSCSSCSSSCCCCCHHHHHHTHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEecCCCCccEEEEEeEEEEeccCCCCCCCCccccccCChhHhhhccceeccCHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999988889999999999999997678987765 78888899999999999999999999999999999999999
Q ss_pred ceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHHHHhcCCCceEEEecccccCCCCCCCCCCccceeeee
Q 012612 167 FIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPE 246 (460)
Q Consensus 167 F~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e 246 (460)
|+||+||+|+++++||++++|.+ +|+++++||+||||+|||++++|++||||||||||+|+++++||+|||||||+|
T Consensus 153 F~eV~TP~l~~~~~e~~~~~f~~---~~~~~~~~L~~Spql~~~~~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e 229 (429)
T 1wyd_A 153 FIEIFTPKIIASATEGGAQLFPV---IYFGKEAFLAQSPQLYKELMAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVE 229 (429)
T ss_dssp CEECCCCSEESSCSSTTCCCCEE---EETTEEEEECSCCHHHHHHHHHHHSEEEEEEEEECCCCCCSSSCCSEEEEEEEE
T ss_pred CEEEECCEEEeeCCCCCceeEEE---ecCCceEEecCCcHHHHHHHHhCcCceEEEcccccccCCccccccceeeEeeee
Confidence 99999999999999999999988 789999999999999998788899999999999999999889999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHcccccccccc
Q 012612 247 LAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKW 326 (460)
Q Consensus 247 ~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~ 326 (460)
++|.+++|+|+++|+|++++++.+.+++..++++.+... . .++.||+|+||.||++++++.|.+ ..|
T Consensus 230 ~~~~~~~dlm~~~e~ll~~l~~~~~~~~~~~l~~~~~~~--------~-~l~~pf~rity~eA~~~~~~~g~~----~~~ 296 (429)
T 1wyd_A 230 MAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEP--------P-EVKIPIKRLKYTEAIEILRSKGYN----IKF 296 (429)
T ss_dssp EETCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCCC--------C-CCCSSCEEEEHHHHHHHHHHSSCC----CCT
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhccccc--------c-cCCCCccEEEHHHHHHHHHhcCCC----ccc
Confidence 999999999999999999999999887765555443211 1 124689999999999999877643 468
Q ss_pred ccccchhhhcccccccccCccEEEEeCCCcCccccccccCCc-cceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcC
Q 012612 327 GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG-RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELK 405 (460)
Q Consensus 327 ~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~-~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~ 405 (460)
|.+++...|++|.+.+.. +|+||+|||..++|||++.++++ .++++|||+++|+ ||+|||+|+||+++|+++++..|
T Consensus 297 ~~~l~~~~e~~l~~~~~~-~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~G~-Ei~~G~~r~~d~~~q~~rf~~~g 374 (429)
T 1wyd_A 297 GDDIGTPELRILNEELKE-DLYFIVDWPSDARPFYTKSKSENPELSESFDLIYKFL-EIVSGSTRNHKREVLEEALKKKG 374 (429)
T ss_dssp TSCCCHHHHHHHHHHHCC-SEEEEECCBGGGSCTTBCBCCC-CCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTT
T ss_pred CcccCcHHHHHHHHHhcc-CCEEEecCChhhChhhCCcCCCCCCeEEEEEEEECCE-EEEeCeeeeCCHHHHHHHHHHcC
Confidence 889999999988775543 69999999999999988776544 5899999999998 99999999999999999999999
Q ss_pred CCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCccC
Q 012612 406 LNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 460 (460)
Q Consensus 406 ~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~~ 460 (460)
++++.++|||+|++||+|||||||||+|||+|+++|.+||||||+||+++++|.+
T Consensus 375 ~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdvi~FP~~~~~~~p 429 (429)
T 1wyd_A 375 LKPESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEIVPFPRDKKRLTP 429 (429)
T ss_dssp CCGGGGHHHHGGGGSCCCCEEEEEEEHHHHHHHHHCCCCGGGTSSSCCBTTBCCC
T ss_pred CChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhEEecCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999864
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-101 Score=807.85 Aligned_cols=426 Identities=26% Similarity=0.395 Sum_probs=351.9
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc----cchhhHhccCCCCCcE
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA----EGYDQVKSGLITTGAS 85 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~----~~~~~~~~~~l~~g~~ 85 (460)
.+++|++|... +.|+.|+|+|||+++|.+||++|++|||++| +||||++.+. ..++.++. |+.||+
T Consensus 49 ~~~~i~~l~~~------~~g~~V~v~Gwv~~~R~~gkl~Fi~LrD~~g--~iQ~v~~~~~~~~~~~~~~~~~--l~~es~ 118 (548)
T 3i7f_A 49 KYTEIEELVPA------MAEKTVTIRARVQAVRGKGNMVFLFLRKGIY--TCQALVMKSETISKEFVQFCQK--ISAESI 118 (548)
T ss_dssp CBCCGGGCSGG------GTTCEEEEEEEEEEEEECSSEEEEEEEETTE--EEEEEEECSSSSCHHHHHHHHT--CCTTEE
T ss_pred ceEEhhhcchh------cCCCEEEEEEEEEEEecCCCeEEEEEEECCe--eEEEEEECCCccCHHHHHHHhC--CCCCCE
Confidence 45778888753 7899999999999999999999999999996 5999998742 12444677 999999
Q ss_pred EEEEeeEeecCC-----CCceEEEEEeEEEEEecCCCCCCCCccc-----------------------------------
Q 012612 86 IWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKR----------------------------------- 125 (460)
Q Consensus 86 V~V~G~v~~~~~-----~~~~~El~~~~i~ils~~~~~~p~~~~~----------------------------------- 125 (460)
|.|+|+|++++. .++++||++++|+|||+|..++|+..++
T Consensus 119 V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (548)
T 3i7f_A 119 CDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLT 198 (548)
T ss_dssp EEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECCCBSCSSCSGGGSCCHHHHHHHHHHTTCC-----------------
T ss_pred EEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecCCCCCCCCchhccccccccccccccccccccccccccccccccccc
Confidence 999999999864 3578999999999999998778876321
Q ss_pred -----------------------cChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCCC
Q 012612 126 -----------------------VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG 182 (460)
Q Consensus 126 -----------------------~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg 182 (460)
.+.+...++||||+|++.++++|++||+++++||+||.++||+||+||+|+++++||
T Consensus 199 ~~~~~~e~~~~l~~~~~~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~eg 278 (548)
T 3i7f_A 199 KRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEG 278 (548)
T ss_dssp --------------CCCCCCCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSBC------
T ss_pred cccccccccccccccccccccccCCHHHhhhchhhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccCCC
Confidence 234455589999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCCCCCCCCCCccceeeeeecCC-CHHHHHHHHH
Q 012612 183 AGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACAT 260 (460)
Q Consensus 183 ~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~-~~~~~~~~~e 260 (460)
++++|.| +||+.++||+|||||||| +|++|++||||||||||||+++++|||||||||||||+|. +++++|+++|
T Consensus 279 ga~~F~v---~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~af~~d~~d~m~~~E 355 (548)
T 3i7f_A 279 GSNIFEV---KYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVME 355 (548)
T ss_dssp ----------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCSSSCCSCEEEEEEEEECSSCTHHHHHHHH
T ss_pred CcceeEE---ecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEecCCCCCCCcchhhhchhhhhhhhcCHHHHHHHHH
Confidence 9999988 789999999999999986 8899999999999999999999999999999999999998 7999999999
Q ss_pred HHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHccccccccccccccchhhhccccc
Q 012612 261 AYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE 340 (460)
Q Consensus 261 ~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~ 340 (460)
+||+++++.+.+++..+++......+. ..+ .-.||+++||.||++++++.|++ ..|+.|++...|++|.+
T Consensus 356 ~li~~i~~~~~~~~~~el~~~~~~~~~---~~~---~~~pf~rit~~eai~~l~~~g~~----~~~~~dl~~~~e~~l~~ 425 (548)
T 3i7f_A 356 KLFTFIFDEIPKRFPDELKVIRKQYPF---EDL---IYRPFLRLTYKEAIEMLRASGET----IGDYDDFTTPQEVKLGE 425 (548)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHSCC---CCC---CCCSCEEEEHHHHHHHHHHTTCC----CCTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHhhhcCCc---ccc---ccCCcceeEHHHHHHHHHHcCCC----CCCccccchHHHHHHHH
Confidence 999999999987766555433221110 001 11589999999999999998765 35778899988887764
Q ss_pred c---cccCccEEEEeCCCcCccccccccC-CccceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHH
Q 012612 341 E---AFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLD 416 (460)
Q Consensus 341 ~---~~~~~p~~I~~fP~~~~pf~~~~~~-~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~ 416 (460)
. .+...++||+|||.+++|||++.++ ++.+++||||+++| +||+||++|+||+++|++++++.|++++.++|||+
T Consensus 426 ~i~~~~~~~~~~i~~yP~~~~pfYak~~~~dp~~~~rFDL~i~G-~Ei~nG~~rl~Dp~~~~~R~~~~G~d~~~~e~yl~ 504 (548)
T 3i7f_A 426 LIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVFVRG-QEITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIE 504 (548)
T ss_dssp HHHHHHCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETT-EEEEEEEEECCCHHHHHHHHHHTTCCGGGGHHHHH
T ss_pred HHHHHcCCCeEEEecCccccCchhhccCCCCCCeEEEEEEEECC-EEEeeCeeecCCHHHHHHHHHHcCCChHHHHHHHH
Confidence 2 2332456778999999999987665 55789999999999 69999999999999999999999999999999999
Q ss_pred HHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCcc
Q 012612 417 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459 (460)
Q Consensus 417 ~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~ 459 (460)
|++||||||||||||||||+||+||.+|||||++|||+++||.
T Consensus 505 al~yG~PPhgG~GlGiDRLvMlltg~~nIRdVi~FPR~p~rl~ 547 (548)
T 3i7f_A 505 SFRFGSWPHAGCGIGLERITMLYLGIPNIRKVTLFPRDPIRLN 547 (548)
T ss_dssp TTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSCCBTTBCC
T ss_pred HHhCCCCCceEEEEcHHHHHHHHhCCccHHHhhcCCCCCCCCC
Confidence 9999999999999999999999999999999999999999984
|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-101 Score=795.08 Aligned_cols=425 Identities=36% Similarity=0.610 Sum_probs=385.7
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc---cchhhHhccCCCCCcEE
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASI 86 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V 86 (460)
++++|+||... +.|+.|+|+|||+++|.+||++|++|||++|. ||||++++. ..|+.++. |+.||+|
T Consensus 3 ~~~~~~~l~~~------~~~~~V~v~G~v~~~R~~g~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~~~~--l~~~~~v 72 (434)
T 1x54_A 3 EKVYCQEVKPE------LDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGI--VQAVVAKNVVGEETFEKAKK--LGRESSV 72 (434)
T ss_dssp CCCCGGGCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEECHHHHCHHHHHHHHT--CCTTCEE
T ss_pred eEEEHHHhhHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCEE--EEEEEECCcCCHHHHHHHhc--CCCCCEE
Confidence 57889999764 68999999999999999999999999999975 999997542 34666777 9999999
Q ss_pred EEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCC--CccccChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhh
Q 012612 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI--QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 164 (460)
Q Consensus 87 ~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~--~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~ 164 (460)
.|+|+|++++++++++||.|+++++||+| .++|+ +.+.++.+.++++||||+|++.+++++++||++++++|+||.+
T Consensus 73 ~v~G~v~~~~~~~~~~el~~~~~~vl~~~-~~~P~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~ 151 (434)
T 1x54_A 73 IVEGIVKADERAPGGAEVHVEKLEVIQAV-SEFPIPENPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLK 151 (434)
T ss_dssp EEEEEEEECTTSGGGEEEEEEEEEEEECC-SCCSSCSSGGGSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCCccEEEEEeEEEEeecC-CCCCCcccccCCCHHHhhhceeeeecCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888999999999999999 66888 6667888999999999999999999999999999999999999
Q ss_pred CCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHHHHhcCCCceEEEecccccCCCCCCCCCCccceee
Q 012612 165 NGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIE 244 (460)
Q Consensus 165 ~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE 244 (460)
+||+||+||+|+++++++++++|.+ +|++.++||+||||+|+|++++|++|||+||||||+|+++++||+|||||||
T Consensus 152 ~gF~eVeTP~l~~~~~e~~~~~f~~---~~~~~~~~Lr~Spel~~~~~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle 228 (434)
T 1x54_A 152 DGWHEVFPPILVTGAVEGGATLFKL---KYFDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLE 228 (434)
T ss_dssp TTCEECCCCSEESCCSSCGGGCCEE---EETTEEEEECSCSHHHHHHHHHHHSEEEEEEEEECCCCCCCSSCCSEEEEEE
T ss_pred CCCEEEeCcEEEeecCCCCceeEEE---eecCCcEEeccChHHHHHHHhcCccceEEEecceecCCCCCcccccEEEEee
Confidence 9999999999999999999999988 7899999999999999987888999999999999999998889999999999
Q ss_pred eeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHcccccccc
Q 012612 245 PELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLV 324 (460)
Q Consensus 245 ~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~ 324 (460)
+|++|.+++|+|+++|+|++++++.+.+++..++++.+... + .++. ++.||+|+||.||++++++.|.+ .
T Consensus 229 ~e~~~~~~~dlm~~~e~ll~~l~~~v~~~~~~~i~~~~~~~--~---~~~~-~~~pf~rity~ea~~~~~~~g~~----~ 298 (434)
T 1x54_A 229 LEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDL--T---TLKN-TEPPFPRISYDEAIDILQSKGVN----V 298 (434)
T ss_dssp EEEETCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTCSCC--H---HHHT-CCSSCCEEEHHHHHHHHHHTTCC----C
T ss_pred EEEcCCCHHHHHHHHHHHHHHHHHHHhhhchhhhhhcCccc--c---cccc-cCCCCcEEEHHHHHHHHHhcCCC----c
Confidence 99999999999999999999999999888777777665422 1 1221 35699999999999999887643 4
Q ss_pred ccccccchhhhcccccccccCccEEEEeCCCcCccccccccCC-ccceeeeecccC-CceeeecHHHhhhhHHHHHHHHH
Q 012612 325 KWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLD 402 (460)
Q Consensus 325 ~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~-~~~~~~fDl~~~-G~~Ei~~g~~r~~~~~~~~~~~~ 402 (460)
.||.+++..+|++|.+.+. +|+||+|||..++|||++.+++ +.++++|||+++ |+|||+|||+|+||+++|+++++
T Consensus 299 ~~~~dl~~~~e~~l~~~~~--~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~~G~gEi~~G~~r~~d~~~q~~rf~ 376 (434)
T 1x54_A 299 EWGDDLGADEERVLTEEFD--RPFFVYGYPKHIKAFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQREDDYDKLLNRIL 376 (434)
T ss_dssp CTTCCCCHHHHHHHHTTCS--SCEEEEEEEGGGSCTTBCBCSSCTTEEEEEEEEETTTTEEEEEEEEBCCCHHHHHHHHH
T ss_pred ccCCccChHHHHHHHHHhC--CcEEEEcCChhhCcccCCcCCCCCCeEEEEEEEECCCceEEecCeEeeCCHHHHHHHHH
Confidence 6888999999999887653 7999999999999998776654 458999999999 99999999999999999999999
Q ss_pred HcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCccC
Q 012612 403 ELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 460 (460)
Q Consensus 403 ~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~~ 460 (460)
..|++++.++|||+|++||+|||||||||+|||+|+++|.+|||||++||+++++|.+
T Consensus 377 ~~g~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdvi~FP~~~~~~~p 434 (434)
T 1x54_A 377 EEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLKLDHIRWAALFPRTPARLYP 434 (434)
T ss_dssp HTTCCGGGGHHHHHTTTSSCCCEEEEEEEHHHHHHHHTTCSSGGGGSSSCCBTTBCCC
T ss_pred HcCCChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhEEEccCcCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999863
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-101 Score=791.28 Aligned_cols=412 Identities=26% Similarity=0.423 Sum_probs=316.3
Q ss_pred eeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCC-CCcEEEEE
Q 012612 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT-TGASIWIQ 89 (460)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~-~g~~V~V~ 89 (460)
+++|++|. . +.|+.|+|+|||+++|.+||++|++|||++|. ||||++. +. |+ .||+|.|+
T Consensus 2 ~~~~~~l~-~------~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~--iQ~v~~~--------~~--l~~~~~~v~v~ 62 (422)
T 1n9w_A 2 RVLVRDLK-A------HVGQEVELLGFLHWRRDLGRIQFLLLRDRSGV--VQVVTGG--------LK--LPLPESALRVR 62 (422)
T ss_dssp BCCGGGGG-G------CTTSEEEEEEEEEEEEECSSEEEEEEEETTEE--EEEEEES--------CC--CCCTTCEEEEE
T ss_pred eEEHHHHH-h------cCCCEEEEEEEEEEEecCCCeEEEEEEECCEE--EEEEEEc--------cc--cCCCCCEEEEE
Confidence 46788886 3 67899999999999999999999999999975 9999975 35 99 99999999
Q ss_pred eeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccc----cChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhC
Q 012612 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR----VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 165 (460)
Q Consensus 90 G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~----~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~ 165 (460)
|+|++++++++++||.|+++++||+|..++|++.++ ++.+.++++||||+|++.+++++++||++++++|+||.++
T Consensus 63 G~v~~~~~~~~~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~~ 142 (422)
T 1n9w_A 63 GLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQ 142 (422)
T ss_dssp EEEEECTTSTTSEEEEEEEEEEEECCCSCCC-----------------CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCCCccEEEEEeEEEEeccCCcCCCCCccccccCCCHHHHhhhhHHhhcCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999988889999999999999997678887765 7788888999999999999999999999999999999999
Q ss_pred CceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHHHHhcCCCceEEEecccccCCCCCCCCCCccceeee
Q 012612 166 GFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEP 245 (460)
Q Consensus 166 gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~ 245 (460)
||+||+||+|+++++|+++++|.+ ++++.++||+||||+|+|++++|++|||+||||||+|+++++||+|||||||+
T Consensus 143 gF~EV~TPil~~~~~e~~~~~f~~---~~~g~~~~L~~Spel~~~~l~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~ 219 (422)
T 1n9w_A 143 DFTEIFTPKVVRAGAEGGSGLFGV---DYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDV 219 (422)
T ss_dssp TCEECCCC-------------------------------CHHHHHHHHHHHSEEEEEEEC-------------CCEEEEE
T ss_pred CCEEEECCEEEEeCCCCCceeEEE---eeCCCcEEeeeCHHHHHHHHhhCCCceeEEeCceECCCCCCCcccceeEEeee
Confidence 999999999999999999999988 78999999999999999865588999999999999999988899999999999
Q ss_pred eecCC-CHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHcccccccc
Q 012612 246 ELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLV 324 (460)
Q Consensus 246 e~~~~-~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~ 324 (460)
|++|+ |++|+|+++|+|++++++.+.+++..++++.+... . ....||+|+||.||++++++.| ..
T Consensus 220 e~~~~~d~~dlm~l~e~ll~~l~~~~~~~~~~~i~~~~~~~--------~-~~~~pf~rity~eA~~~~~~~~-----~~ 285 (422)
T 1n9w_A 220 EMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATW--------P-SFPQDIPRLTHAEAKRILKEEL-----GY 285 (422)
T ss_dssp EEESCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCC--------C-CCSSSCCEEEHHHHHHHHHHTS-----CC
T ss_pred eeeCCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcCccc--------c-ccCCCcceeEHHHHHHHHHhcC-----Cc
Confidence 99999 99999999999999999999887766665544311 0 1115899999999999998766 24
Q ss_pred ccccccchhhhcccccccc---cCccEEEEeCCCcCccccccccCCccceeeeecccCCceeeecHHHhhhhHHHHHHHH
Q 012612 325 KWGCDLQSEHERYLTEEAF---GGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRL 401 (460)
Q Consensus 325 ~~~~~l~~~~e~~l~~~~~---~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~ 401 (460)
.||.+++..+|++|.+.+. +.+|+||+|||..++|||++.+++ .++++|||++||+ ||+|||+|+||+++|++++
T Consensus 286 ~~~~dl~~~~e~~l~~~~~~~~~~~p~fv~d~P~~~~pf~~~~~~d-~~~~~fDL~~~G~-Ei~~G~~r~~d~~~q~~rf 363 (422)
T 1n9w_A 286 PVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEED-GTTRSFDLLFRGL-EITSGGQRIHRYEELLESL 363 (422)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHTCCSEEEEECCBGGGSCTTBCBCTT-SBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHH
T ss_pred ccccccCcHHHHHHHHHHHhhhCCceEEEECCChhhCcCcCCCCCC-CEEEEEEEEECCE-EEEeCEeecCCHHHHHHHH
Confidence 6888898888888765431 126999999999999999988776 7899999999998 9999999999999999999
Q ss_pred HHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCccC
Q 012612 402 DELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 460 (460)
Q Consensus 402 ~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~~~ 460 (460)
+..|++++.++|||+|++||+|||||||||+|||+|+++|.+||||||+|||++++|.+
T Consensus 364 ~~~g~~~~~~~~yl~a~~yG~PPhgG~glGiDRLvm~l~g~~~Irdvi~FPr~~~~~~p 422 (422)
T 1n9w_A 364 KAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFPRDRHRLTP 422 (422)
T ss_dssp HHTTCCGGGGHHHHGGGGBCCCSEEEEEEEHHHHHHHHTTCSSGGGGCSCC--------
T ss_pred HHcCCCHHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHhCCCcHHhEEecCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999853
|
| >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-100 Score=799.77 Aligned_cols=440 Identities=16% Similarity=0.226 Sum_probs=362.5
Q ss_pred CCCCccccceeeeccccCCccC---CCCCCCCEEEEEEEEeeeccCC-CeEEEEEEcCCCccceEEEEeCCcc----chh
Q 012612 2 GSKVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAE----GYD 73 (460)
Q Consensus 2 ~~~~~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~GwV~~~R~~g-~~~Fv~lrD~~~~~~iQvv~~~~~~----~~~ 73 (460)
.|++++|.++++++++.+.|++ +....++.|+|+|||+++|.+| |++|++|||++| .||||++++.. .|+
T Consensus 25 ~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gkk~~F~~LrD~sg--~iQvv~~~~~~~~~~~~~ 102 (521)
T 3bju_A 25 DPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV--KLQVMANSRNYKSEEEFI 102 (521)
T ss_dssp CSSCSCCCCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSSSEEEEEEEETTE--EEEEEEEGGGSSCHHHHH
T ss_pred CCCCCcCcCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCCCcEEEEEEECCE--EEEEEEECCccCCHHHHH
Confidence 4888999999999999876542 2334578899999999999999 999999999995 59999987532 355
Q ss_pred hH-hccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCcc-ccChhhhhccccccCC-ChhhhHHHHH
Q 012612 74 QV-KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKK-RVSREFLRTKAHLRPR-TNTFGAVARV 150 (460)
Q Consensus 74 ~~-~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~-~~~~~~~r~~r~l~~R-~~~~~~~~~~ 150 (460)
.+ +. |+.||+|.|+|+|.+++++ ++||.|++|++||+|..++|.... ..+.+...++||||+| ++.++++|++
T Consensus 103 ~~~~~--l~~gd~V~V~G~v~~t~~g--e~ei~~~~i~~l~~~~~~lP~~~~~~~~~e~r~r~RyLdLr~~~~~~~~~r~ 178 (521)
T 3bju_A 103 HINNK--LRRGDIIGVQGNPGKTKKG--ELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFII 178 (521)
T ss_dssp HHHHH--CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCCSCCCCC----CCHHHHHHCHHHHHHHCHHHHHHHHH
T ss_pred HHHhc--CCCCCEEEEEEEEEecCCC--CEEEEEeEEEEeecCCCCCCCccccccChhhhhhhhhhhHhcCHHHHHHHHH
Confidence 53 56 9999999999999999865 899999999999999855554322 2356666699999999 8999999999
Q ss_pred HHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccC
Q 012612 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAE 229 (460)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E 229 (460)
||+|+++||+||.++||+||+||+|+++++++++++|.+ ++++|+.++||+|||||||| |+++|++||||||||||||
T Consensus 179 Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~t-~~~~~~~~~yL~~SpqL~lk~liv~g~~rVyeig~~FR~E 257 (521)
T 3bju_A 179 RSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFIT-YHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNE 257 (521)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCEE-EETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred HHHHHHHHHHHHHHCCCEEEeCceeeccCCCccccceee-ecccCCcceEeeCCHHHHHHHHHhcCcCceEEEEcceeCC
Confidence 999999999999999999999999998877777899965 45899999999999999997 8899999999999999999
Q ss_pred CCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHH
Q 012612 230 NSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDA 309 (460)
Q Consensus 230 ~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea 309 (460)
++++ ||||||||||+||+|+|++|+|+++|+||+++++.+.+++. +++.+... +. ..+...+..||+|++|.||
T Consensus 258 ~~~t-rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~~--~~~~~~~~--d~-~~~~~d~~~pf~rit~~ea 331 (521)
T 3bju_A 258 GIDL-THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYK--VTYHPDGP--EG-QAYDVDFTPPFRRINMVEE 331 (521)
T ss_dssp CCBT-TBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSSSE--EEECTTCT--TS-CCEEEECCSSCEEEEHHHH
T ss_pred CCCC-ccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCce--EEeccccc--cc-ccceeccCCCcccccHHHH
Confidence 9965 99999999999999999999999999999999999987652 22211100 00 0000012345555555555
Q ss_pred HHHHHH------------------------HccccccccccccccchhhhcccccccccCccEEEEeCCCcCcccccccc
Q 012612 310 IELLIK------------------------AKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN 365 (460)
Q Consensus 310 ~~~l~~------------------------~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~ 365 (460)
++.+.. .|+.+.....||..++..+|+++.+.+. +|+||+|||.+++||+++.+
T Consensus 332 i~~~~g~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~~ve~~l~--~P~fI~dyP~~~spla~~~~ 409 (521)
T 3bju_A 332 LEKALGMKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCI--NPTFICDHPQIMSPLAKWHR 409 (521)
T ss_dssp HHHHHTSCCCCGGGTTSHHHHHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHTGGGCC--SCEEEECCBGGGCTTBCBCS
T ss_pred HHHHhCCCCCccccCCcHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhcC--CcEEEECCccccCcccccCC
Confidence 544432 2222222234666777888888887654 79999999999999998777
Q ss_pred CCccceeeeecccCCceeeecHHHhhhhHHHHHHHHHHc------CCCccc--HHHHHHHHhcCCCCCcceeccHHHHHH
Q 012612 366 DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDS--YWWYLDLRHYGSVPHAGFGLGFERLVQ 437 (460)
Q Consensus 366 ~~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~------~~~~~~--~~~yl~~~~~G~pp~~G~giGidRL~m 437 (460)
++++++++|||+++|. ||+||++|+||++.|+++++.. |.+++. ++|||+|++||||||||||||||||+|
T Consensus 410 ~dp~~~~rfdL~i~G~-Ei~ng~~el~Dp~~qr~rf~~q~~~~~~g~~e~~~~d~~yl~al~yG~PP~gG~GlGiDRLvM 488 (521)
T 3bju_A 410 SKEGLTERFELFVMKK-EICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVAM 488 (521)
T ss_dssp SSTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHHTCTTSCCCCHHHHHHHTTTCCSEEEEEEEHHHHHH
T ss_pred CCCCeeeeEEEEEcce-eeecChhhhCCHHHHHHHHHHHHHHHhcCCChhhcchHHHHHHHhcCCCCceeEEEcHHHHHH
Confidence 7778999999999995 9999999999999999998654 776654 599999999999999999999999999
Q ss_pred HHcCCCCccccccccCCCCC
Q 012612 438 FATGVENIRDAIPFPRTPGS 457 (460)
Q Consensus 438 ~l~~~~~Irdv~~FPr~~~~ 457 (460)
+|||.+||||||+||+++..
T Consensus 489 lltg~~~IRdVi~FP~~~~~ 508 (521)
T 3bju_A 489 FLTDSNNIKEVLLFPAMKPE 508 (521)
T ss_dssp HHTTCSSGGGSCSSCCCCCC
T ss_pred HHhCCCcHHhEecCCCCCCc
Confidence 99999999999999998864
|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-99 Score=793.96 Aligned_cols=429 Identities=20% Similarity=0.283 Sum_probs=354.5
Q ss_pred CCCccccceeeeccccCCccCCC----CCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc---cchhhH
Q 012612 3 SKVGEFRKKLKIVDVKGGPNEGL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQV 75 (460)
Q Consensus 3 ~~~~~~~~~~~i~~l~~~~~~~~----~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~---~~~~~~ 75 (460)
|++++|++++++.+|.+.+.+-. ...|+.|+|+|||+++|.+||++|++|||++| .||||++.+. ..|+.+
T Consensus 56 ~yp~~~~~t~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~~R~~Gk~~Fi~LrD~sg--~iQvv~~~~~~~~~~~~~~ 133 (529)
T 4ex5_A 56 AYPNDFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMGKASFATVQDGSG--QIQFFVTPADVGAETYDAF 133 (529)
T ss_dssp SSCCCCCCCCCHHHHHHHTTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEECSSC--EEEEEECHHHHCHHHHHHH
T ss_pred CCCCCCcCceEHHHHHHHhhccCccccccCCcEEEEEEEEEeeecCCCeEEEEEEeCCe--eEEEEEECCcCCHHHHHHH
Confidence 78899999999999998764210 12378999999999999999999999999996 5999998753 236667
Q ss_pred hccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccccCh---hhhhccccccCC-ChhhhHHHHHH
Q 012612 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR---EFLRTKAHLRPR-TNTFGAVARVR 151 (460)
Q Consensus 76 ~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~~---~~~r~~r~l~~R-~~~~~~~~~~R 151 (460)
++ |+.||+|.|+|+|++++++ ++||.|++|+|||+|+ .|+|.+.+++ +.+.++||||+| ++.++++|++|
T Consensus 134 ~~--l~~gd~V~V~G~v~~t~~g--elel~~~~i~vLs~a~--~plP~k~~~l~d~e~r~r~RyLdLr~~~~~~~~fr~R 207 (529)
T 4ex5_A 134 KK--WDLGDIVAARGVLFRTNKG--ELSVKCTQLRLLAKAL--RPLPDKFHGLADQETRYRQRYVDLIVTPETRTTFRAR 207 (529)
T ss_dssp HT--CCTTCEEEEEEEEEECTTS--CEEEEEEEEEEEECCS--SCCCC------CTTHHHHTHHHHHHHCHHHHHHHHHH
T ss_pred hc--CCCCCEEEEEEEEEEcCCC--cEEEEEEEEEEEecCC--CCCCccccCCcChhhhhhhhhhhhhcCHHHHHHHHHH
Confidence 88 9999999999999998865 8999999999999997 5666665543 555699999997 88999999999
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCC
Q 012612 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAEN 230 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~ 230 (460)
|+|+++||+||.++||+||+||+|+++.+++++++|.+ ++++++.++||+|||||||| |+++|++||||||||||||+
T Consensus 208 s~i~~~iR~ff~~~gFlEVeTPiL~~~~gGA~a~pF~t-~~n~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~ 286 (529)
T 4ex5_A 208 TKAIASIRKFMGDADFMEVETPMLHPIPGGAAAKPFVT-HHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEG 286 (529)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEE-EETTTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEEECCSC
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeccCCCCccccccc-ccccCCcceecccCHHHHHHHHHhcCCCcEEEeehheecCC
Confidence 99999999999999999999999998766666789964 55899999999999999986 88999999999999999999
Q ss_pred CCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHH
Q 012612 231 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAI 310 (460)
Q Consensus 231 ~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~ 310 (460)
++ .||||||||||||++|+|++|+|+++|+||+++++.+.+++ .+.+.+... .+..||+|+||.||+
T Consensus 287 ~~-~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~--~~~~~~~~i----------d~~~pf~Rity~eAi 353 (529)
T 4ex5_A 287 VS-PRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTA--TIQYQGREL----------DLAQPFHRLTITQAI 353 (529)
T ss_dssp CB-TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCS--EEEETTEEE----------ETTSCCEEEEHHHHH
T ss_pred CC-CCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCcC--ceecCceee----------ccCCCceEEEHHHHH
Confidence 95 79999999999999999999999999999999999998765 344433211 135689999999998
Q ss_pred HHHHH-------------------Hcccccccc--ccc--cccchhhhcccccccccCccEEEEeCCCcCccccccccCC
Q 012612 311 ELLIK-------------------AKKKFEFLV--KWG--CDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD 367 (460)
Q Consensus 311 ~~l~~-------------------~~~~~~~~~--~~~--~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~ 367 (460)
+.+.. .|++++... .|+ ..++..++.. +++.+. +|+||+|||.+++|||++.+++
T Consensus 354 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~g~l~~e~~~~~-vE~~l~-~P~FI~dyP~~~splak~~~~~ 431 (529)
T 4ex5_A 354 QKYAPSYTDGQLSDDAFLRSELKRLGVDVTQPAFLNAGIGALQLALFEET-AEAQLW-EPTFIIDYPIEVSPLARESDTV 431 (529)
T ss_dssp HHHCTTSCHHHHTCHHHHHHHHHHTTCCTTSGGGTTCCHHHHHHHHHHHH-TGGGCC-SCEEEEEEEGGGCTTBCBCSSS
T ss_pred HHHhCCCChhhcCCHHHHHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHH-hccccC-CCEEEECCchhhCCCcccCCCC
Confidence 76543 222222100 233 2333334444 444455 7999999999999999766667
Q ss_pred ccceeeeecccCCceeeecHHHhhhhHHHHHHHHHH------cCCCcccH--HHHHHHHhcCCCCCcceeccHHHHHHHH
Q 012612 368 GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE------LKLNRDSY--WWYLDLRHYGSVPHAGFGLGFERLVQFA 439 (460)
Q Consensus 368 ~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~------~~~~~~~~--~~yl~~~~~G~pp~~G~giGidRL~m~l 439 (460)
+.+++||||+++|+ ||+||++|+||++.|++++++ .|.+++.. +|||+|++||||||||||||||||+|++
T Consensus 432 p~~~~rFeL~i~G~-EianG~~el~Dp~~q~~rf~~q~~~~~~gd~ea~~~De~yl~aleyG~PP~gG~GlGiDRLvMll 510 (529)
T 4ex5_A 432 AGITERFELFITGR-EIANGFSELNDPEDQAARFKKQVEQKDAGDEEAMFFDADYIRALEYGMPPTGGCGIGIDRLVMLL 510 (529)
T ss_dssp TTEEEEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCCEEEEEEEHHHHHHHH
T ss_pred CCceEEEEEEECCE-EEecchhccCCHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHcCCCCCcEEEEeHHHHHHHH
Confidence 78999999999996 999999999999999888753 34333322 8999999999999999999999999999
Q ss_pred cCCCCccccccccCCCC
Q 012612 440 TGVENIRDAIPFPRTPG 456 (460)
Q Consensus 440 ~~~~~Irdv~~FPr~~~ 456 (460)
||.+|||||++||+...
T Consensus 511 tg~~~IRdVi~FP~~r~ 527 (529)
T 4ex5_A 511 TDSPTIRDVLLFPHLRR 527 (529)
T ss_dssp HTCSSGGGGCSSCCCCC
T ss_pred cCCCcHHHeecCCccCC
Confidence 99999999999999764
|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-99 Score=792.75 Aligned_cols=431 Identities=19% Similarity=0.293 Sum_probs=355.5
Q ss_pred CCCCccccceeeeccccCCccCCC----CCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc---cchh-
Q 012612 2 GSKVGEFRKKLKIVDVKGGPNEGL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYD- 73 (460)
Q Consensus 2 ~~~~~~~~~~~~i~~l~~~~~~~~----~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~---~~~~- 73 (460)
.|+.++|.++|++.+|...+.+-. ...|+.|+|+|||+++|.+||++|++|||++| .||||++.+. ..|+
T Consensus 33 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg--~iQvv~~~~~~~~~~~~~ 110 (504)
T 1e1o_A 33 VAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGG--RIQLYVARDSLPEGVYND 110 (504)
T ss_dssp CSSCCCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEETTTSSTTHHHH
T ss_pred CCCCCCCcCceEHHHHHHHhhccCccccccCCCEEEEEEEEEEEecCCCcEEEEEEECCe--eEEEEEECCcCCHHHHHH
Confidence 488899999999999998754210 01278999999999999999999999999996 5999998763 2366
Q ss_pred hHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccccC---hhhhhccccccCC-ChhhhHHHH
Q 012612 74 QVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVAR 149 (460)
Q Consensus 74 ~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~---~~~~r~~r~l~~R-~~~~~~~~~ 149 (460)
.++. |+.||+|.|+|+|++++++ ++||.|++++|||+|.. |+|.+.++ .+...++||||+| ++.++++|+
T Consensus 111 ~~~~--l~~g~~V~V~G~v~~~~~g--e~ei~~~~i~vl~~a~~--plP~k~~~~~~~e~r~r~RyLdL~~~~~~~~~~r 184 (504)
T 1e1o_A 111 QFKK--WDLGDIIGARGTLFKTQTG--ELSIHCTELRLLTKALR--PLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFV 184 (504)
T ss_dssp TGGG--CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCSS--CCCC-------TTHHHHTHHHHHHHCHHHHHHHH
T ss_pred HHhc--CCCCCEEEEEEEEEecCCc--eEEEEEEEEEEecccCC--CCCccccCCcChhhhhhccchhhhcCHHHHHHHH
Confidence 5677 9999999999999999875 89999999999999974 55556555 4555699999996 899999999
Q ss_pred HHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEeccccc
Q 012612 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRA 228 (460)
Q Consensus 150 ~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~ 228 (460)
+||+|+++||+||.++||+||+||+|+++++++++++|.|. +++++.++||+|||||||| |+++|++|||||||||||
T Consensus 185 ~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~-~~~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~ 263 (504)
T 1e1o_A 185 VRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITH-HNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRN 263 (504)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEE-ETTTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEec-cCCCCceEEeccCHHHHHHHHhhcCCCcEEEEcccccC
Confidence 99999999999999999999999999987666667899764 4789999999999999997 789999999999999999
Q ss_pred CCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHH
Q 012612 229 ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTD 308 (460)
Q Consensus 229 E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~e 308 (460)
|+++ .||+|||||||+||+|+|++|+|+++|+||+++++.+.+++. +.+.+.. + -+..||+|+||.|
T Consensus 264 E~~~-~rH~pEFt~lE~e~af~d~~dlm~l~E~li~~~~~~v~~~~~--i~~~~~~--------i--~~~~pf~rity~e 330 (504)
T 1e1o_A 264 EGIS-VRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTK--VTYGEHV--------F--DFGKPFEKLTMRE 330 (504)
T ss_dssp CCCC-C-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSE--EEETTEE--------E--ETTSCCEEEEHHH
T ss_pred CCCC-ccccCceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCce--eeeCCEe--------e--ccCCCceEEeHHH
Confidence 9996 599999999999999999999999999999999999988763 4443321 1 1345889999999
Q ss_pred HHHHHHH-Hcc------------------ccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCcc
Q 012612 309 AIELLIK-AKK------------------KFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGR 369 (460)
Q Consensus 309 a~~~l~~-~~~------------------~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~ 369 (460)
|++.+.. .+. +++....+|..++..++.++.+. +. +|+||+|||.+++||+++.++++.
T Consensus 331 Ai~~~~~d~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ve~~-~~-~p~fV~dyP~~~~pf~~~~~~dp~ 408 (504)
T 1e1o_A 331 AIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAH-LI-QPTFITEYPAEVSPLARRNDVNPE 408 (504)
T ss_dssp HHHHHSTTCCGGGGGSHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTGGG-CC-SCEEEECCBGGGCTTBCBCSSCTT
T ss_pred HHHHHcCCCCccccCCHHHHHHHHHHcCCCCCCCcCHhHHHHHHHHHHhhcc-CC-CeEEEECCCcccCcCcCCCCCCCC
Confidence 9877654 211 11100112223344455554444 34 799999999999999887766777
Q ss_pred ceeeeecccCCceeeecHHHhhhhHHHHHHHHHHc-----CCCcccH---HHHHHHHhcCCCCCcceeccHHHHHHHHcC
Q 012612 370 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-----KLNRDSY---WWYLDLRHYGSVPHAGFGLGFERLVQFATG 441 (460)
Q Consensus 370 ~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~-----~~~~~~~---~~yl~~~~~G~pp~~G~giGidRL~m~l~~ 441 (460)
++++|||+++|+ ||+|||+|+||++.|+++++.. ..+++.+ +|||+|++||+|||||||||||||+|+|||
T Consensus 409 ~~~~fDL~i~G~-Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhgG~glGiDRLvmlltg 487 (504)
T 1e1o_A 409 ITDRFEFFIGGR-EIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTN 487 (504)
T ss_dssp BBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHHHHHHHHCCSEEEEEEEHHHHHHHHHT
T ss_pred ceEEEEEEECCe-EEccceeeeCCHHHHHHHHHHHHHHhhcCChhhhhchHHHHHHHhcCCCCceeEEEcHHHHHHHHhC
Confidence 999999999998 9999999999999999998753 1234443 999999999999999999999999999999
Q ss_pred CCCccccccccCCCCC
Q 012612 442 VENIRDAIPFPRTPGS 457 (460)
Q Consensus 442 ~~~Irdv~~FPr~~~~ 457 (460)
.+||||||+||+++..
T Consensus 488 ~~~IRdVi~FPr~~~~ 503 (504)
T 1e1o_A 488 SHTIRDVILFPAMRPQ 503 (504)
T ss_dssp CSSGGGTSSSCCCCC-
T ss_pred CCcHHhEeccCCCCCC
Confidence 9999999999998753
|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-99 Score=788.09 Aligned_cols=430 Identities=19% Similarity=0.284 Sum_probs=356.3
Q ss_pred CCCCccccceeeeccccCCccCCC----CCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc---cchhh
Q 012612 2 GSKVGEFRKKLKIVDVKGGPNEGL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQ 74 (460)
Q Consensus 2 ~~~~~~~~~~~~i~~l~~~~~~~~----~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~---~~~~~ 74 (460)
.|+.++|.++|++.||...+.+-. ...|+.|+|+|||+++|.+||++|++|||++| .||||++.+. ..|+.
T Consensus 25 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg--~iQvv~~~~~~~~~~~~~ 102 (493)
T 3a74_A 25 DPFGKRFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMGKAGFAHIQDVTG--QIQIYVRQDDVGEQQYEL 102 (493)
T ss_dssp CTTCCCCCCSCCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEEHHHHHHHHHHH
T ss_pred CCCCCCCcCceehHHHHHhhccccchhhccCCCEEEEEEEEEEEecCCCcEEEEEEECCE--eEEEEEECCcCCHHHHHH
Confidence 478889999999999998754210 01278999999999999999999999999996 5999998653 23666
Q ss_pred HhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCCCccccC---hhhhhccccccCC-ChhhhHHHHH
Q 012612 75 VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARV 150 (460)
Q Consensus 75 ~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~---~~~~r~~r~l~~R-~~~~~~~~~~ 150 (460)
++. |+.||+|.|+|+|++++++ ++||.|+++++||+|.. |+|.+.++ .+...++||||+| ++.+++++++
T Consensus 103 ~~~--l~~g~~v~V~G~v~~~~~g--e~ei~~~~i~vl~~~~~--plP~k~~~~~~~e~r~r~RyldL~~~~~~~~~~r~ 176 (493)
T 3a74_A 103 FKI--SDLGDIVGVRGTMFKTKVG--ELSIKVSSYEFLTKALR--PLPEKYHGLKDIEQRYRQRYLDLIMNPESKKTFIT 176 (493)
T ss_dssp HHH--CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCSS--CCCCC-----CHHHHHHTHHHHHHHCTHHHHHHHH
T ss_pred Hhc--CCCCCEEEEEEEEEeCCCC--cEEEEEEEEEEcccccC--CCCccccCCCCHhhhhhcchhhhhcCHHHHHHHHH
Confidence 778 9999999999999999875 89999999999999974 55556555 4555699999996 8999999999
Q ss_pred HHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccC
Q 012612 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAE 229 (460)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E 229 (460)
||+|++++|+||.++||+||+||+|+++++++++++|.+. +++++.++||+||||+||| ++++|++||||||||||||
T Consensus 177 Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~-~~~~~~~~yLr~SpqLylk~l~v~G~~rVyeig~~FR~E 255 (493)
T 3a74_A 177 RSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITH-HNALDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNE 255 (493)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEE-ETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEec-ccCCCceeEEecCHHHHHHHHhhcccCceEEECccccCC
Confidence 9999999999999999999999999988776667899764 4789999999999999997 7899999999999999999
Q ss_pred CCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHH
Q 012612 230 NSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDA 309 (460)
Q Consensus 230 ~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea 309 (460)
+++ .||+|||||||+||+|+|++|+|+++|+||+++++.+.+++. +.+.+... -+..||+|+||.||
T Consensus 256 ~~~-~rH~pEFT~lE~e~af~d~~dlm~l~E~ll~~l~~~v~~~~~--i~~~~~~i----------~~~~pf~rity~ea 322 (493)
T 3a74_A 256 GIS-TRHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTK--IQYGEHLV----------DLTPEWRRLHMVDA 322 (493)
T ss_dssp CCB-TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSE--EEETTEEE----------ECCSSCEEEEHHHH
T ss_pred CCC-cccCCceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHhCCce--EeeCCEee----------ccCCCcceeeHHHH
Confidence 996 599999999999999999999999999999999999988763 33322100 02345666666666
Q ss_pred HHHH------------------HHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccce
Q 012612 310 IELL------------------IKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTV 371 (460)
Q Consensus 310 ~~~l------------------~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~ 371 (460)
++.+ ++.|.+.+....+|..++..++.++.+.+ . +|+||+|||.+++||+++.++++.++
T Consensus 323 i~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ve~~~-~-~p~fv~dyP~~~~pf~~~~~~dp~~~ 400 (493)
T 3a74_A 323 IKEYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFGHIVNEFFEQKVEDKL-I-QPTFIYGHPVEISPLAKKNPDDPRFT 400 (493)
T ss_dssp HHHHTCCCTTSCCCHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTGGGC-C-SCEEEECCBGGGCTTBCBCSSCTTBB
T ss_pred HHHHhCCCCccccCHHHHHHHHHHcCCCCCCCcChhHHHHHHHHHHhhccc-C-CcEEEECCCcccCCccCcCCCCCCeE
Confidence 5544 33343322112345566666776655544 4 79999999999999988776677799
Q ss_pred eeeecccCCceeeecHHHhhhhHHHHHHHHHHc-----CCCcccH---HHHHHHHhcCCCCCcceeccHHHHHHHHcCCC
Q 012612 372 AAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-----KLNRDSY---WWYLDLRHYGSVPHAGFGLGFERLVQFATGVE 443 (460)
Q Consensus 372 ~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~-----~~~~~~~---~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~ 443 (460)
++|||+++|+ ||+||++|+||++.|+++++.. ..+++.+ +|||+|++||+|||||||||+|||+|+|||.+
T Consensus 401 ~~fDL~i~G~-Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhgG~glGiDRLvmlltg~~ 479 (493)
T 3a74_A 401 DRFELFIVGR-EHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDEDFLEALEYGMPPTGGLGIGVDRLVMLLTNSP 479 (493)
T ss_dssp SEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCSEEEEEEEHHHHHHHHHTCS
T ss_pred EEEEEEeCCe-EEecCcceeCCHHHHHHHHHHHHHHhhcCCchhhhccHHHHHHHhCCCCCceeEEEcHHHHHHHHhCCC
Confidence 9999999998 9999999999999999998652 1234443 99999999999999999999999999999999
Q ss_pred CccccccccCCCC
Q 012612 444 NIRDAIPFPRTPG 456 (460)
Q Consensus 444 ~Irdv~~FPr~~~ 456 (460)
||||||+||+.+.
T Consensus 480 ~IRdVi~FPr~~~ 492 (493)
T 3a74_A 480 SIRDVLLFPQMRH 492 (493)
T ss_dssp SGGGTSSSCCCCC
T ss_pred cHHhEeccCCCCC
Confidence 9999999999864
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-98 Score=785.24 Aligned_cols=430 Identities=24% Similarity=0.404 Sum_probs=366.0
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCe-EEEEEEcCCCccceEEEEeCCc------cchhhHhccCCCC
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSV-TFIEVNDGSCLSNMQCVMTSDA------EGYDQVKSGLITT 82 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~-~Fv~lrD~~~~~~iQvv~~~~~------~~~~~~~~~~l~~ 82 (460)
.+++|++|... ++.|+.|+|+|||+++|.+|++ +|++|||++| .||||++.+. ..++.++. |+.
T Consensus 22 ~~~~~~~l~~~-----~~~g~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g--~iQvv~~~~~~~~~~~~~~~~~~~--l~~ 92 (487)
T 1eov_A 22 KRVKFVDLDEA-----KDSDKEVLFRARVHNTRQQGATLAFLTLRQQAS--LIQGLVKANKEGTISKNMVKWAGS--LNL 92 (487)
T ss_dssp CCCCGGGCCTT-----TTTTCEEEEEEEEEEEEECSSSEEEEEEEETTE--EEEEEEECCSSSSSCHHHHHHHTT--CCT
T ss_pred ceeEHHHhccc-----ccCCCEEEEEEEEEEeeccCCccEEEEEEECCc--cEEEEEeccccccccHHHHHHHhc--CCC
Confidence 34567777542 2679999999999999999997 9999999996 4999998651 12455677 999
Q ss_pred CcEEEEEeeEeecCC-----CCceEEEEEeEEEEEecCCCCCCCCccc---------------cChhhhhccccccCCCh
Q 012612 83 GASIWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKR---------------VSREFLRTKAHLRPRTN 142 (460)
Q Consensus 83 g~~V~V~G~v~~~~~-----~~~~~El~~~~i~ils~~~~~~p~~~~~---------------~~~~~~r~~r~l~~R~~ 142 (460)
||+|.|+|+|++++. .+|++||.|++++|||+|..++|++.++ ++.+.+.++||||+|++
T Consensus 93 e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a~~~lP~~~~~~~~~~~~~~~~~~~~~~~e~r~~~R~LdLr~~ 172 (487)
T 1eov_A 93 ESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTV 172 (487)
T ss_dssp TCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCCSSCSSCHHHHTSCHHHHHHTTCCCCCHHHHHHTHHHHTTSH
T ss_pred CCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecccccCCcchhhcccccccccccccccCChhhhhhcceeecCCH
Confidence 999999999999974 3478999999999999998778886432 45666779999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEE
Q 012612 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYT 221 (460)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfe 221 (460)
.+++++++||+|++++|+||.++||+||+||+|+++++++++++|.+ +++++++||+||||+|+| +|++|++||||
T Consensus 173 ~~~~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~~~ga~~f~~---~~~~~~~~L~~Spql~~k~l~~~g~~rvy~ 249 (487)
T 1eov_A 173 TNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEV---TYFKGKAYLAQSPQFNKQQLIVADFERVYE 249 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEE---EETTEEEEECSCTHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEecCCCCccccee---ccCCccEEcccChHHHHHHHHhcCCCceEE
Confidence 99999999999999999999999999999999999999999999998 578999999999999997 67999999999
Q ss_pred EecccccCCCCCCCCCCccceeeeeecCC-CHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCC
Q 012612 222 FGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERD 300 (460)
Q Consensus 222 I~~~FR~E~~~~~rHl~EFt~lE~e~~~~-~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~ 300 (460)
||||||||+++++||+|||||||+|++|. +++|+|+++|+||+++++.+.+++..++.......... .+....+.+
T Consensus 250 ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~~l~~~v~~~~~~~l~~~~~~~~~~---~~~~~~~~~ 326 (487)
T 1eov_A 250 IGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYPVE---EFKLPKDGK 326 (487)
T ss_dssp EEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCC---CCCCCTTCC
T ss_pred EeccEecCCCCCCccchhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhchhHHHhhhhhcCCc---ceecccCCC
Confidence 99999999999999999999999999997 69999999999999999999876654443221111000 011011237
Q ss_pred CcccCHHHHHHHHHHHccccccccccccccchhhhcccccc---cccCccEEEEeCCCcCcccccccc-CCccceeeeec
Q 012612 301 FVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEE---AFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDM 376 (460)
Q Consensus 301 ~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~---~~~~~p~~I~~fP~~~~pf~~~~~-~~~~~~~~fDl 376 (460)
|+++++.||++++++.|.+ ..|+.+++...|+.|.+. .+...|+||+|||..++|||++.+ +++.++++|||
T Consensus 327 ~~ri~~~ea~~~l~~~g~~----~~~~~d~~~~~e~~l~~~~~~~~~~~~~~v~dyP~~~~pfy~~~~~~dp~~~~~fDL 402 (487)
T 1eov_A 327 MVRLTYKEGIEMLRAAGKE----IGDFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDF 402 (487)
T ss_dssp CEEEEHHHHHHHHHHTTCC----CCTTCCCCHHHHHHHHHHHHHHSCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEE
T ss_pred eeEEEHHHHHHHHHHhCCC----CCcccchhhHHHHHHHHHHHHHhCCCCEEEECCccccChhhcCcCCCCCCeEEEEEE
Confidence 8999999999999887754 346667887777776531 223257899999999999975544 45568999999
Q ss_pred ccCCceeeecHHHhhhhHHHHHHHHHHcCCCcc--cHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCccccccccCC
Q 012612 377 LVPRIGELIGGSQREERLEYLEGRLDELKLNRD--SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 454 (460)
Q Consensus 377 ~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~--~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~ 454 (460)
+++|+ ||+|||+|+||++.|+++++..|++++ .++|||+|++||+|||||||||+|||+|+|+|.+||||||+|||+
T Consensus 403 ~~~G~-Ei~~G~~rl~d~~~q~~r~~~~g~~~~~~~~~~yl~al~yG~PPhgG~glGiDRLvmll~g~~~IRdVi~FPr~ 481 (487)
T 1eov_A 403 FMRGE-EILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPRD 481 (487)
T ss_dssp EETTE-EEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCCCCEEEEEEEHHHHHHHHTTCSSGGGGCSSCCB
T ss_pred EeCCE-EEEeeEEecCCHHHHHHHHHHcCCChhhhhHHHHHHHHhcCCCCCeEEEEhHHHHHHHHcCCCcHHheeecCCC
Confidence 99995 999999999999999999999999988 789999999999999999999999999999999999999999999
Q ss_pred CCCcc
Q 012612 455 PGSVE 459 (460)
Q Consensus 455 ~~~~~ 459 (460)
+++|.
T Consensus 482 ~~r~~ 486 (487)
T 1eov_A 482 PKRLR 486 (487)
T ss_dssp TTBCC
T ss_pred CCCCC
Confidence 99986
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-97 Score=786.36 Aligned_cols=413 Identities=22% Similarity=0.362 Sum_probs=336.8
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEE
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (460)
++|++.+|... +.|+.|+|+|||+++|++|+++|++|||++|. ||||++.+...|+.++. |+.||+|.|+
T Consensus 3 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~--l~~e~~V~V~ 72 (580)
T 1l0w_A 3 RTHYAGSLRET------HVGEEVVLEGWVNRRRDLGGLIFLDLRDREGL--VQLVAHPASPAYATAER--VRPEWVVRAK 72 (580)
T ss_dssp CSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTEE--EEEEECTTSTTHHHHTT--CCTTCEEEEE
T ss_pred cEEEHHHhHHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCee--EEEEEeCChhHHHHHhc--CCCCcEEEEE
Confidence 67899999774 68999999999999999999999999999974 99999875435666777 9999999999
Q ss_pred eeEeecCC-----CCceEEEEEeEEEEEecCCC-CCCCCc------cccChhhhh-ccccccCCChhhhHHHHHHHHHHH
Q 012612 90 GNVVPSQG-----SKQKVELKVNKIVLVGKSDP-SYPIQK------KRVSREFLR-TKAHLRPRTNTFGAVARVRNALAY 156 (460)
Q Consensus 90 G~v~~~~~-----~~~~~El~~~~i~ils~~~~-~~p~~~------~~~~~~~~r-~~r~l~~R~~~~~~~~~~Rs~i~~ 156 (460)
|+|++++. ++|++||.|++++|||+|.+ ++|+.+ +....+.+| ++||||+|++.++++|++||+|++
T Consensus 73 G~v~~~~~~~~~~~~ge~Ei~~~~i~vl~~a~~lP~~i~~~~~~~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~Rs~i~~ 152 (580)
T 1l0w_A 73 GLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIK 152 (580)
T ss_dssp EEEEECSSCCTTSTTTTEEEEEEEEEEEECCCCCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcCccCCCccEEEEEeEEEEeccCcCCCCCcchhccccccccCCHHHhhhhhHHHhcCHHHHHHHHHHHHHHH
Confidence 99999852 35789999999999999973 244544 223334455 999999999999999999999999
Q ss_pred HHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCCCCCCC
Q 012612 157 ATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSR 235 (460)
Q Consensus 157 ~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~~~~~r 235 (460)
++|+||.++||+||+||+|+++++||+++ |.|++..+.+.-+||+|||||||| ||++|++||||||||||||+++++|
T Consensus 153 ~iR~fl~~~gF~EVeTPiL~~s~~eGAr~-F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~~~r 231 (580)
T 1l0w_A 153 AIWDFLDREGFVQVETPFLTKSTPEGARD-FLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADR 231 (580)
T ss_dssp HHHHHHHHTTCEECCCCSSBCCCSSSSCC-CEEECTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCCCSSC
T ss_pred HHHHHHHhCCcEEEeCCEEecCCCCCCCC-ccccccccCCceeECccCHHHHHHHHHHhccCCeEEEeceeeCCCCCCCc
Confidence 99999999999999999999999998876 987653333444459999999998 7899999999999999999997766
Q ss_pred CCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHH--
Q 012612 236 HLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELL-- 313 (460)
Q Consensus 236 Hl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l-- 313 (460)
| ||||||||||+|.|++|+|+++|+||+++++.+.+.. +..||+|+||.||++.+
T Consensus 232 ~-pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v~~~~----------------------~~~pf~rity~eA~~~~g~ 288 (580)
T 1l0w_A 232 Q-PDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGVE----------------------LPLPFPRLSYEEAMERYGS 288 (580)
T ss_dssp C-SEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHTCCC----------------------CCSSCCEEEHHHHHHHHSS
T ss_pred C-CCccceeeeecCCCHHHHHHHHHHHHHHHHHHHhCCc----------------------cCCCccEEEHHHHHHHhcC
Confidence 6 6999999999999999999999999999999986421 11245555555554443
Q ss_pred -----------------------------------------------------HHHccccccccccccc-cchhhhcc--
Q 012612 314 -----------------------------------------------------IKAKKKFEFLVKWGCD-LQSEHERY-- 337 (460)
Q Consensus 314 -----------------------------------------------------~~~~~~~~~~~~~~~~-l~~~~e~~-- 337 (460)
++.|..--..+.|+.+ +.+.++++
T Consensus 289 dkpd~r~~~~~~d~~~~~~~~~~~~~~~~~~v~~i~~~~~~~r~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~k~l~ 368 (580)
T 1l0w_A 289 DKPDLRFGLELKEVGPLFRQSGFRVFQEAESVKALALPKALSRKEVAELEEVAKRHKAQGLAWARVEEGGFSGGVAKFLE 368 (580)
T ss_dssp SSCCCSSCCCCEECGGGGSSSCCTHHHHSSEEEEEEESSCCCHHHHHHHHHHHHHTSCSCCEEEEEETTEEESTTHHHHG
T ss_pred CCcccccccchhhhhhhhhccccccccccceeEEEeccCccCHHHHHHHHHHHHHcCCCcceEEEecCccccchhhhhhh
Confidence 2222100000112222 22211111
Q ss_pred --------------------------------------------cccccccCccEEEEeCCCc------------Ccccc
Q 012612 338 --------------------------------------------LTEEAFGGCPVIVSDYPKE------------IKAFY 361 (460)
Q Consensus 338 --------------------------------------------l~~~~~~~~p~~I~~fP~~------------~~pf~ 361 (460)
++++. .+|+||+|||.. ++|||
T Consensus 369 ~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~Lg~lr~~l~~~~~lve~~--~~p~fV~dfP~~~~~~~~~~~~a~~~PFt 446 (580)
T 1l0w_A 369 PVREALLQATEARPGDTLLFVAGPRKVAATALGAVRLRAADLLGLKREG--FRFLWVVDFPLLEWDEEEEAWTYMHHPFT 446 (580)
T ss_dssp GGHHHHHHHHCCCTTCEEEEEEESHHHHHHHHHHHHHHHHHHTTCCCCS--CCEEEEECCBSBCCCTTTSCCCBSSCTTB
T ss_pred HHHHHHHHHhCCCcCceEEEecCccchhhhhHHHHHHHHHHHhcccccc--cCeEEEEcCCcccccccccccccccCCcc
Confidence 23332 279999999996 89999
Q ss_pred ccccC-------Cc-cc-eeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCccc----HHHHHHHHhcCCCCCcce
Q 012612 362 MRQND-------DG-RT-VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS----YWWYLDLRHYGSVPHAGF 428 (460)
Q Consensus 362 ~~~~~-------~~-~~-~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~----~~~yl~~~~~G~pp~~G~ 428 (460)
|+.++ ++ .. +++|||++||+ ||+|||+|+||++.|+++|+..|+++++ ++|||+|++||+||||||
T Consensus 447 ~~~~~dl~~l~~dp~~~~a~~fDL~i~G~-Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~~L~al~yG~PPhgG~ 525 (580)
T 1l0w_A 447 SPHPEDLPLLEKDPGRVRALAYDLVLNGV-EVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGI 525 (580)
T ss_dssp CBCSTTTTHHHHCGGGCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBTCCCEEEE
T ss_pred CCCchhhhhhcCCccceeeeEEEEEeCCE-EEEeCeeecCCHHHHHHHHHHcCCChhHHHhHHHHHHHHHhcCCCCCceE
Confidence 88765 34 35 79999999998 9999999999999999999999998876 789999999999999999
Q ss_pred eccHHHHHHHHcCCCCccccccccCCCCCcc
Q 012612 429 GLGFERLVQFATGVENIRDAIPFPRTPGSVE 459 (460)
Q Consensus 429 giGidRL~m~l~~~~~Irdv~~FPr~~~~~~ 459 (460)
|||+|||+|+|+|.+||||||+||++++.+.
T Consensus 526 glGlDRLvMll~g~~sIRdVi~FP~~~~~~~ 556 (580)
T 1l0w_A 526 AWGLDRLLALMTGSPSIREVIAFPKNKEGKD 556 (580)
T ss_dssp EEEHHHHHHHHHTCSSGGGGSSSCCCTTSCB
T ss_pred EEcHHHHHHHHcCCCcHHeEecCCCCCCccc
Confidence 9999999999999999999999999998764
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-96 Score=782.20 Aligned_cols=434 Identities=21% Similarity=0.330 Sum_probs=346.2
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCc-cchhhHhccCCCCCcEEEE
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWI 88 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~-~~~~~~~~~~l~~g~~V~V 88 (460)
++|++.+|... +.|+.|+|+|||+++|++|+++|++|||++|. ||||++.+. ..|+.++. |+.||+|.|
T Consensus 2 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~~--l~~e~~V~V 71 (585)
T 1c0a_A 2 RTEYCGQLRLS------HVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI--VQVFFDPDRADALKLASE--LRNEFCIQV 71 (585)
T ss_dssp CSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTEE--EEEEECGGGHHHHHHHTT--CCTTCEEEE
T ss_pred ceeEHHHHHHH------hCCCEEEEEEEEEEEecCCCcEEEEEEECCee--EEEEEeCCchHHHHHHhc--CCCCCEEEE
Confidence 57889999774 67999999999999999999999999999974 999997653 23666777 999999999
Q ss_pred EeeEeecCC-------CCceEEEEEeEEEEEecCCCCCCCCcc-ccChhhhhccccccCCChhhhHHHHHHHHHHHHHHH
Q 012612 89 QGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKK-RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHK 160 (460)
Q Consensus 89 ~G~v~~~~~-------~~~~~El~~~~i~ils~~~~~~p~~~~-~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ 160 (460)
+|+|.+++. ++|++||.|++++|||+|.+ +|.+.. .++.+...++||||+|++.++++|++||+|++++|+
T Consensus 72 ~G~v~~~~~~~~n~~~~~geiEl~~~~i~vl~~a~~-lP~~~~~~~~~e~Rl~~R~LdLR~~~~~~~l~~Rs~i~~~iR~ 150 (585)
T 1c0a_A 72 TGTVRARDEKNINRDMATGEIEVLASSLTIINRADV-LPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRR 150 (585)
T ss_dssp EEEEEECCTTTCCTTSTTTTEEEEEEEEEEEECCCS-CSSCTTSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred EeEEEccCcccccccCCCccEEEEEeEEEEEeccCC-CCCCccccCCHhHhhhchHhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 999999865 35789999999999999973 555433 334444449999999999999999999999999999
Q ss_pred hhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCCCCCCCCCCc
Q 012612 161 FFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAE 239 (460)
Q Consensus 161 ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~~~~~rHl~E 239 (460)
||.++||+||+||+|+++++||+++ |.|++..+.+.-+||+|||||||| ||++|++||||||||||||+++++|| ||
T Consensus 151 fl~~~gFlEVeTPiL~~s~~eGAr~-F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~t~r~-pE 228 (585)
T 1c0a_A 151 FMDDHGFLDIETPMLTKATPEGARD-YLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQ-PE 228 (585)
T ss_dssp HHHHTTCEECCCCSSBCCCSSSSCC-CEEECSSSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBC-SE
T ss_pred HHHhCCcEEEeCCEEecCCCCCCcc-ceecccccCCceEeCccCHHHHHHHHHhcCCCceEEEeceeecCCCCCCcC-cc
Confidence 9999999999999999999998877 988664344444569999999998 78999999999999999999977666 69
Q ss_pred cceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCcc---cccc------cccc-----------------ccchh---H
Q 012612 240 FWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE---DMDF------FNTW-----------------IEKGI---I 290 (460)
Q Consensus 240 Ft~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~---~i~~------~~~~-----------------~~~~~---~ 290 (460)
|||||+||+|+|++|+|+++|+||+++++.+.+.+.. .+.| ++.. ...++ .
T Consensus 229 FT~lE~e~af~d~~dvm~~~E~li~~i~~~v~~~~~~~f~r~ty~ea~~~~g~dkpd~r~~~~l~d~~~~~~~~~f~~~~ 308 (585)
T 1c0a_A 229 FTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRNPMELTDVADLLKSVEFAVFA 308 (585)
T ss_dssp EEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSCCCCSCCEEEHHHHHHHHSCSSCCTTSCCCEEECHHHHTTCSCHHHH
T ss_pred cceeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCCccccceeeHHHHHHHhcCCCccccCCceeEEehhhhccCCcceeh
Confidence 9999999999999999999999999999998765421 1111 1100 00000 0
Q ss_pred hhhhh----h-----h-cCCCcccCHHHHHHHHHHHccc-ccccccccc------ccchhhhcc----------------
Q 012612 291 DRLST----V-----A-ERDFVQLSYTDAIELLIKAKKK-FEFLVKWGC------DLQSEHERY---------------- 337 (460)
Q Consensus 291 ~~l~~----~-----~-~~~~~~i~~~ea~~~l~~~~~~-~~~~~~~~~------~l~~~~e~~---------------- 337 (460)
+.+++ + . +.+|++.+++++.+++++.|.. +. .+.|+. .+.+.++++
T Consensus 309 ~~~~~~~~~~~~i~~~~~~~~~r~~~~~l~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~ 387 (585)
T 1c0a_A 309 GPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLA-YIKVNERAKGLEGINSPVAKFLNAEIIEDILDRTAAQ 387 (585)
T ss_dssp HHHHCTTEEEEEEEETTGGGCCHHHHHHHHHHHHHTTCSCCC-EEEESCGGGGGGGEECTTGGGSCHHHHHHHHHHTTCC
T ss_pred hhhhccCceEEEEEccccCccCHhhHHHHHHHHHHcCCCCce-eEEecccccccccccchhhhhcCHHHHHHHHHHhCCC
Confidence 00110 0 0 1136677788888888876532 10 112222 122222111
Q ss_pred -------------------------------cccccccCccEEEEeCCCc-----------CccccccccC-------Cc
Q 012612 338 -------------------------------LTEEAFGGCPVIVSDYPKE-----------IKAFYMRQND-------DG 368 (460)
Q Consensus 338 -------------------------------l~~~~~~~~p~~I~~fP~~-----------~~pf~~~~~~-------~~ 368 (460)
++++.. .+|+||+|||.. ++||||+.++ ++
T Consensus 388 ~~d~~~~~~~~~~~~~~~lG~lr~~l~~~~~lve~~~-~~p~fV~dfP~~~~~~~~~~~a~~~PFt~~~~~dl~~l~~dp 466 (585)
T 1c0a_A 388 DGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESK-WAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAP 466 (585)
T ss_dssp TTCEEEEEEEEHHHHHHHHHHHHHHHHHHTTCSCSSC-CCEEEEECCBSEEECSSSCEEESSCTTBCBSSCCHHHHHHSC
T ss_pred cCcEEEEecCcccchhhhhHHHHHHHHHHhCcccccc-cccEEEEeCCccccccccccccccCCccCCCchhhhhhccCC
Confidence 222212 279999999996 8999998765 34
Q ss_pred -cc-eeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCccc----HHHHHHHHhcCCCCCcceeccHHHHHHHHcCC
Q 012612 369 -RT-VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS----YWWYLDLRHYGSVPHAGFGLGFERLVQFATGV 442 (460)
Q Consensus 369 -~~-~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~----~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~ 442 (460)
.. +++|||++||+ ||+|||+|+||++.|+++|+..|+++++ ++|||+|++||+|||||||||+|||+|+|||.
T Consensus 467 ~~~~a~~fDL~i~G~-Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~yL~al~yG~PPhgG~glGlDRLvmlltg~ 545 (585)
T 1c0a_A 467 ENAVANAYDMVINGY-EVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGT 545 (585)
T ss_dssp TTCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTTCCCEEEEEEEHHHHHHHHHTC
T ss_pred cceeeeEEEEEECCE-EEeeeeeecCCHHHHHHHHHHcCCChHHHHhhHHHHHHHHhcCCCCceeEEEcHHHHHHHHcCC
Confidence 25 89999999998 9999999999999999999999999876 78999999999999999999999999999999
Q ss_pred CCccccccccCCCCCcc
Q 012612 443 ENIRDAIPFPRTPGSVE 459 (460)
Q Consensus 443 ~~Irdv~~FPr~~~~~~ 459 (460)
+||||||+|||+++.+.
T Consensus 546 ~sIRdVi~FPr~~~~~~ 562 (585)
T 1c0a_A 546 DNIRDVIAFPKTTAAAC 562 (585)
T ss_dssp SCGGGGSSSCCCTTSCB
T ss_pred CcHHheecCCCCCCccc
Confidence 99999999999998764
|
| >4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-86 Score=703.24 Aligned_cols=438 Identities=23% Similarity=0.293 Sum_probs=330.4
Q ss_pred CCCCCccc-cceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc---chhhHh
Q 012612 1 MGSKVGEF-RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVK 76 (460)
Q Consensus 1 ~~~~~~~~-~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~---~~~~~~ 76 (460)
|-|.+..| .++|++.+|... +.|++|+|+|||+++|++ +|++|||++|. ||||++.+.. .++.++
T Consensus 1 ~~~~~~~~~~rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~---~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~~~ 69 (617)
T 4ah6_A 1 MIPEFSSFVVRTNTCGELRSS------HLGQEVTLCGWIQYRRQN---TFLVLRDFDGL--VQVIIPQDESAASVKKILC 69 (617)
T ss_dssp --CCCSCSSSCSSCGGGCCGG------GTTCEEEEEEEECCCCTT---TEEEEECSSCE--EEEECCCSSSSHHHHHHHH
T ss_pred CCccccccccCceEHHHhHHH------hCCCEEEEEEEeeeecCe---EEEEEEeCCcC--EEEEEeCCcCcHHHHHHHh
Confidence 33555554 678999999875 789999999999999975 59999999974 9999987642 356677
Q ss_pred ccCCCCCcEEEEEeeEeecCC-------CCceEEEEEeEEEEEecCCCCCCCCccccC--hhhhh-ccccccCCChhhhH
Q 012612 77 SGLITTGASIWIQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKRVS--REFLR-TKAHLRPRTNTFGA 146 (460)
Q Consensus 77 ~~~l~~g~~V~V~G~v~~~~~-------~~~~~El~~~~i~ils~~~~~~p~~~~~~~--~~~~r-~~r~l~~R~~~~~~ 146 (460)
. |+.||+|.|+|+|++++. .+|++||.+++++|||+|. ++|++.+.+. .+++| ++||||+|++.+++
T Consensus 70 ~--l~~e~~V~V~G~v~~~~~~~~n~~~~tgeiEl~~~~i~vL~~a~-~lP~~~~~~~~~~ee~Rl~~R~LdLR~~~~~~ 146 (617)
T 4ah6_A 70 E--APVESVVQVSGTVISRPAGQENPKMPTGEIEIKVKTAELLNACK-KLPFEIKNFVKKTEALRLQYRYLDLRSFQMQY 146 (617)
T ss_dssp H--CCSSCEEEEEEEEEECSTTCCCTTSTTTTEEEEEEEEEEEECBC-CCSSCTTTTCCSCHHHHHHTHHHHTTSHHHHH
T ss_pred c--CCCCCEEEEEEEEEeCCccccCccCCCCcEEEEEeEEEEeecCC-CCCcccccccccChhhhccceeeeecchHHHH
Confidence 8 999999999999998643 2468999999999999998 6888766543 34555 99999999999999
Q ss_pred HHHHHHHHHHHHHHhhh-hCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHH-HHhcCCCceEEEec
Q 012612 147 VARVRNALAYATHKFFQ-ENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGP 224 (460)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~-~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~ 224 (460)
+|++||++++++|+||. ++||+||+||+|++++++|+.+ |.|++ +.++..+||+||||+||| ||++|++|||||+|
T Consensus 147 ~lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st~~GA~~-F~v~~-~~~g~~~~L~qSpql~kq~l~v~g~~rvfqi~~ 224 (617)
T 4ah6_A 147 NLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTPGGAKE-FLVPS-REPGKFYSLPQSPQQFKQLLMVGGLDRYFQVAR 224 (617)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCCCSSSCC-CEEEC-SSTTCEEECCSSTTHHHHHHHHTSCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCCCCCCcC-ceecc-ccCCcccccccCHHHHHHHHHhcccCcEEEEEh
Confidence 99999999999999995 7999999999999988888775 88765 467889999999999997 78999999999999
Q ss_pred ccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhcc-------------------Cccccccc----
Q 012612 225 TFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN-------------------CKEDMDFF---- 281 (460)
Q Consensus 225 ~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~-------------------~~~~i~~~---- 281 (460)
|||||++++ +|+||||||||||+|.|++|+|+++|+||+++++.+... .++++.+-
T Consensus 225 ~FR~E~~~t-~r~pEFt~lE~e~af~d~~d~m~~~E~l~~~~~~~~~~~~~~pf~r~ty~eA~~~ygsDkPDlR~~~ei~ 303 (617)
T 4ah6_A 225 CYRDEGSRP-DRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPNDKDPVVVPFPTMTFAEVLATYGTDKPDTRFGMKII 303 (617)
T ss_dssp EECCCSSCS-SSCSEEEEEEEEEESCCHHHHHHHHHHHHHHHSCSSSCCCCSSCCEEEHHHHHHHTSSSSCCSSSCCCEE
T ss_pred heecccCCC-CcCcceecceeeecCCCHHHHHHHHHHHHHHHHHHhcCccCCCceEeEHHHHHHHHcCCCCccccCcccc
Confidence 999999965 568999999999999999999999999999998654211 11222110
Q ss_pred ---ccccc--chhH-hhhhh---------hhcC--CCcccCHHHHHHHHHH-----------------------------
Q 012612 282 ---NTWIE--KGII-DRLST---------VAER--DFVQLSYTDAIELLIK----------------------------- 315 (460)
Q Consensus 282 ---~~~~~--~~~~-~~l~~---------~~~~--~~~~i~~~ea~~~l~~----------------------------- 315 (460)
.-+.. ..+. ..+.. +.+. .+.|-..++..+..+.
T Consensus 304 DVtdif~~s~FkVF~~~~~~~~g~VkAI~vpg~a~~lsRK~id~L~e~ak~~~g~ggl~~~~~~d~~~~~~I~Kflsee~ 383 (617)
T 4ah6_A 304 DISDVFRNTEIGFLQDALSKPHGTVKAICIPEGAKYLKRKDIESIRNFAADHFNQEILPVFLNANRNWNSPVANFIMESQ 383 (617)
T ss_dssp ECGGGGSSCCCHHHHHHTTSTTEEEEEEEEESCTTTSCTTTHHHHHHHHHHSSCCCEEEECSSTTTTSSCTTHHHHHHHH
T ss_pred cHHHHhccCCchhHhhhhhcCCCeEEEEEcCCCccccchhhHHHHHHHHHHhcCCceEEEEEecCCccccchhhhcCHHH
Confidence 00000 0000 00000 0000 0122122222222222
Q ss_pred -------Hccccccccc--ccc------ccch----hhhcc------cccccccCccEEEEeCCCc-------------C
Q 012612 316 -------AKKKFEFLVK--WGC------DLQS----EHERY------LTEEAFGGCPVIVSDYPKE-------------I 357 (460)
Q Consensus 316 -------~~~~~~~~~~--~~~------~l~~----~~e~~------l~~~~~~~~p~~I~~fP~~-------------~ 357 (460)
.+.+-.+.+- .|. .|.. ..+.. |.++- ...++||+|||.. +
T Consensus 384 ~~~L~e~l~a~~GDlIff~Ag~~~~v~~~LG~LR~~l~~~L~~~~~~l~~~~-~~~f~WvvdfPlf~~~~~~~~~~~a~H 462 (617)
T 4ah6_A 384 RLELIRLMETQEEDVVLLTAGEHNKACSLLGKLRLECADLLETRGVVLRDPT-LFSFLWVVDFPLFLPKEENPRELESAH 462 (617)
T ss_dssp HHHHHHHHTCCSSEEEEEEEEEHHHHHHHHHHHHHHHHHHHHTTSCCSCCTT-SCCEEEEECCBSBCCCSSSSSSCCBSS
T ss_pred HHHHHHHhCCCCCCEEEEecCChHHHHHHHHHHHHHHHHHhhhccccccCCC-CeEEEEEeccCCcCCccccccceeecc
Confidence 1111000000 000 0000 01111 22221 1269999999983 6
Q ss_pred ccccccccCC-------c--cceeeeecccCCceeeecHHHhhhhHHHHHHHHH-HcCCCcccHHHHHHHHhcCCCCCcc
Q 012612 358 KAFYMRQNDD-------G--RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD-ELKLNRDSYWWYLDLRHYGSVPHAG 427 (460)
Q Consensus 358 ~pf~~~~~~~-------~--~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~-~~~~~~~~~~~yl~~~~~G~pp~~G 427 (460)
+||+++...| + -.+++|||++||+ ||+|||+|+|+++.|+++++ .+|++++.++|||+|++||+|||||
T Consensus 463 hPFT~P~~~d~~~l~~~p~~~~a~~ydlv~~g~-El~~gs~ri~~~~~q~~~f~~~~~~~~~~~~~~l~a~~~G~pphgG 541 (617)
T 4ah6_A 463 HPFTAPHPSDIHLLYTEPKKARSQHYDLVLNGN-EIGGGSIRIHNAELQRYILATLLKEDVKMLSHLLQALDYGAPPHGG 541 (617)
T ss_dssp CSSCCCCCTTSTHHHHSTTSSBCCCEEEEETTE-EEEEEECCCCSHHHHHHHHHHHCSSTHHHHHHHHHHHTBTCCCEEE
T ss_pred CCcCCCChhhHHHhhcChhhhhhceEEEEECCE-EEeeeeEEcCCHHHHHHHHHHhhccchhhHHHHHHHHHcCCCCCCc
Confidence 8999886433 2 2578899999996 99999999999999999999 7899888899999999999999999
Q ss_pred eeccHHHHHHHHcCCCCccccccccCCCCC
Q 012612 428 FGLGFERLVQFATGVENIRDAIPFPRTPGS 457 (460)
Q Consensus 428 ~giGidRL~m~l~~~~~Irdv~~FPr~~~~ 457 (460)
+|+|+|||+|+++|.+||||||+||++...
T Consensus 542 ~a~G~dRlvml~~g~~~irdvi~fP~~~~~ 571 (617)
T 4ah6_A 542 IALGLDRLICLVTGSPSIRDVIAFPKSFRG 571 (617)
T ss_dssp EEEEHHHHHHHHHTCSSGGGSSSSCCCSSS
T ss_pred eeecHHHHHHHHcCCCchheEEecCCCCCc
Confidence 999999999999999999999999998754
|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-75 Score=583.72 Aligned_cols=297 Identities=19% Similarity=0.184 Sum_probs=236.3
Q ss_pred cCCChhhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCC-CCCCceeeeccccCC------ccccccccHHHHHH
Q 012612 138 RPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE-GAGEQFCVTTLDFFE------KPAFLTVSGQLNAE 210 (460)
Q Consensus 138 ~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~e-g~~~~F~v~~~~~~~------~~~~L~~Spql~l~ 210 (460)
+.|++ .+++|++||+|+++||+||.++||+||+||+|++++++ +.+++|.+ +|++ .++||+||||||||
T Consensus 27 ~~~~~-~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~---~~~~~~~~~~~~~yL~~Spql~~k 102 (345)
T 3a5y_A 27 WQPSA-SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFET---RFVGPGHSQGMNLWLMTSPEYHMK 102 (345)
T ss_dssp TSCSS-CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEE---EECCSTTSCCEEEEECSCSHHHHH
T ss_pred cCCch-HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEE---EecCcccccCCCEeecCCHHHHHH
Confidence 44554 88999999999999999999999999999999998886 46789988 6775 78999999999998
Q ss_pred -HHhcCCCceEEEecccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchh
Q 012612 211 -TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGI 289 (460)
Q Consensus 211 -l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~ 289 (460)
+|++|++||||||||||||++ +.||+|||||||+|++|.|++|+|+++|+||+++++. .+|.+...
T Consensus 103 ~l~~~g~~rvyqIg~~FR~E~~-~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~v~~~------------~~~~rity 169 (345)
T 3a5y_A 103 RLLVAGCGPVFQLCRSFRNEEM-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC------------PAAESLSY 169 (345)
T ss_dssp HHHHTTCCSEEEEEEEECCCCC-BTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHCC------------CCCEEEEH
T ss_pred HHHHcCCCcEEEEEcceeCCCC-cccccchhheeeeeeeCCCHHHHHHHHHHHHHHHHcC------------CCCcEeeH
Confidence 899999999999999999999 8999999999999999999999999999999999861 12333344
Q ss_pred HhhhhhhhcCCCcccCHHHHHHHHHHHccccccccccc-cccchhhhcccc----cccccCccEEEEeCCCcCccccccc
Q 012612 290 IDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWG-CDLQSEHERYLT----EEAFGGCPVIVSDYPKEIKAFYMRQ 364 (460)
Q Consensus 290 ~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~-~~l~~~~e~~l~----~~~~~~~p~~I~~fP~~~~pf~~~~ 364 (460)
.+++++.++.+.+..+++++.+++++.|... +.++ .+++...|+++. +.++..+|+||+|||..++||++..
T Consensus 170 ~ea~~~~~g~d~~~~~~~~l~~~~~~~g~~~---~~~~~~~~~~~~e~~l~~~ve~~lg~~~p~fv~dyP~~~~~~~~~~ 246 (345)
T 3a5y_A 170 QQAFLRYLEIDPLSADKTQLREVAAKLDLSN---VADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQASLAQIS 246 (345)
T ss_dssp HHHHHHHTCCCTTCCC---------------------------HHHHHHHHHHTGGGSSSSSCEEEECCBGGGCTTBCBC
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHcCCcc---cCCCcCCHhHHHHHHHHHHHHHHcCCCCEEEEECCChhhChhhCCC
Confidence 5566666666656667777777777666430 2333 355555555553 2232237999999999999997654
Q ss_pred cCCccceeeeecccCCceeeecHHHhhhhHHHHHHHHHHc-------CCCcccH-HHHHHHHhcCCCCCcceeccHHHHH
Q 012612 365 NDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-------KLNRDSY-WWYLDLRHYGSVPHAGFGLGFERLV 436 (460)
Q Consensus 365 ~~~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~-------~~~~~~~-~~yl~~~~~G~pp~~G~giGidRL~ 436 (460)
++++.++++|||++||+ ||+||++|+||+++|+++++.. |++++++ +|||+|++||+|||||||||+|||+
T Consensus 247 ~~~~~~a~~fDL~~~G~-Ei~~G~~rl~d~~~q~~rf~~~~~~~~~~g~~~~~~d~~yl~al~yG~PPhgG~glGiDRLv 325 (345)
T 3a5y_A 247 TEDHRVAERFEVYYKGI-ELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPIDQNLIEALKVGMPDCSGVALGVDRLV 325 (345)
T ss_dssp SSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHCCCSEEEEEEEHHHHH
T ss_pred CCCCCeEEEEEEEECCE-EEeeeEEEeCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCcEEEEcHHHHH
Confidence 44556889999999998 9999999999999999999874 8888888 6899999999999999999999999
Q ss_pred HHHcCCCCccccccccCCC
Q 012612 437 QFATGVENIRDAIPFPRTP 455 (460)
Q Consensus 437 m~l~~~~~Irdv~~FPr~~ 455 (460)
|+++|.+||||||+|||+.
T Consensus 326 mll~g~~~IRdVi~FPr~~ 344 (345)
T 3a5y_A 326 MLALGAETLAEVIAFSVDR 344 (345)
T ss_dssp HHHHTCSSGGGGSSSCTTT
T ss_pred HHHcCCCcHheEecCCccc
Confidence 9999999999999999974
|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-68 Score=523.78 Aligned_cols=278 Identities=27% Similarity=0.466 Sum_probs=246.1
Q ss_pred ccccccCCChhhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecC--------CCCCCCCceeeeccccCCcccccccc
Q 012612 133 TKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS--------DCEGAGEQFCVTTLDFFEKPAFLTVS 204 (460)
Q Consensus 133 ~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~--------~~eg~~~~F~v~~~~~~~~~~~L~~S 204 (460)
+||++|+|++ +++++++|++|++.+|+||.++||+||+||+|+++ .+|+ +++|.+ +|+++++||++|
T Consensus 1 ~~r~l~lr~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f~~---~~~~~~~~L~~S 75 (294)
T 1nnh_A 1 MNAVEIISRE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPAEV---EIYGVKMRLTHS 75 (294)
T ss_dssp -CHHHHHTSC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCCEE---EETTEEEEECSC
T ss_pred CchHHhhhcc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeEEE---EcCCCCEEeccC
Confidence 4799999999 99999999999999999999999999999999999 8888 888988 688999999999
Q ss_pred HHHHHH-HHhcCCCceEEEecccccCC--CCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccc
Q 012612 205 GQLNAE-TYATALSNVYTFGPTFRAEN--SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFF 281 (460)
Q Consensus 205 pql~l~-l~~~g~~rvfeI~~~FR~E~--~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~ 281 (460)
||+|+| ++++|++|||+||||||+|+ +++.||+|||||+|+|++|.+++|+|+++|+|+++++..+.+....+
T Consensus 76 pe~~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~l~~~~e~l~~~l~~~~~~~~~~~---- 151 (294)
T 1nnh_A 76 MILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGRE---- 151 (294)
T ss_dssp SHHHHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHHSSC----
T ss_pred hHHHHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhhccc----
Confidence 999997 67888999999999999999 87789999999999999999999999999999999998775411000
Q ss_pred cccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCcccc
Q 012612 282 NTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY 361 (460)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~ 361 (460)
+.. ++. |+|++|.||++ + ||. .+|+ ++.. . +|+||+||| +|||
T Consensus 152 -----------i~~-~~~-~~r~~y~ea~~---~----------~g~----~~er--~~~~-~-~P~~v~~~P---~pf~ 194 (294)
T 1nnh_A 152 -----------FPK-TKR-FEVFEYSEVLE---E----------FGS----DEKA--SQEM-E-EPFWIINIP---REFY 194 (294)
T ss_dssp -----------CCC-CSS-CEEEEHHHHHH---H----------TSS----HHHH--HHHC-S-SCEEEECCC---CCTT
T ss_pred -----------ccc-CCC-ceEeEHHHHHH---H----------hCC----hHhh--hhhc-C-CCEEEEcCC---hHHh
Confidence 100 233 89999999974 2 222 2233 2222 3 799999999 9999
Q ss_pred ccccCCccceeeeecccC-CceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCC-CCcceeccHHHHHHHH
Q 012612 362 MRQNDDGRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSV-PHAGFGLGFERLVQFA 439 (460)
Q Consensus 362 ~~~~~~~~~~~~fDl~~~-G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~p-p~~G~giGidRL~m~l 439 (460)
++. |+..+++||++++ |++||+||++|+||++.|.++++..|++++.++|||+|++||+| ||||||||+|||+|++
T Consensus 195 ~~~--d~~~~~~~Dl~~~~g~~Ei~~g~~r~~d~~~l~~~~~~~g~~~~~~~~~l~~l~~G~p~P~~G~glGieRL~mll 272 (294)
T 1nnh_A 195 DRE--VDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFI 272 (294)
T ss_dssp BCE--ETTEECEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHHHHTTCCCCEEEEEEEHHHHHHHH
T ss_pred CCC--CCCeEEEEEEEECCCcEEEecCeeecCCHHHHHHHHHHcCCCccCHHHHHHHHhcCCCCCceEEEEcHHHHHHHH
Confidence 876 6678999999999 99999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCCccccccccCCCCCc
Q 012612 440 TGVENIRDAIPFPRTPGSV 458 (460)
Q Consensus 440 ~~~~~Irdv~~FPr~~~~~ 458 (460)
+|.+|||||++||++++++
T Consensus 273 ~g~~~Irdvi~Fp~~~~~~ 291 (294)
T 1nnh_A 273 VGAKHIAEVQPFPRIPGIP 291 (294)
T ss_dssp HTCSSGGGGCSSCCCTTSC
T ss_pred hCCCCHHHEEeccCCCCcc
Confidence 9999999999999999986
|
| >12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=208.92 Aligned_cols=278 Identities=13% Similarity=0.069 Sum_probs=206.2
Q ss_pred HHHHHHHHHHHHHHHhhh-----hCCceeecCceeecCCCC------CCCCceeeeccccCCccccccccHHHHHHH-Hh
Q 012612 146 AVARVRNALAYATHKFFQ-----ENGFIWISSPIITASDCE------GAGEQFCVTTLDFFEKPAFLTVSGQLNAET-YA 213 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~-----~~gF~EV~TPiL~~~~~e------g~~~~F~v~~~~~~~~~~~L~~Spql~l~l-~~ 213 (460)
..++...+.+..+++||. +.|+++|..|+++....+ |...+-.++..+.-+..+.+.+|-..|||+ +.
T Consensus 3 ~~~~~tq~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~ErpV~f~i~~~~~~~~eivhSLaKWKR~aL~ 82 (330)
T 12as_A 3 TAYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKWKRQTLG 82 (330)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCSSSTTCCEEECSCCTTHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcCcEEecCCEEecCCCCCCCCCCCceecceEecccCCCceEEEeeeHHHHHHHHHH
Confidence 346677889999999999 899999999999985442 222333332222337788999999999984 33
Q ss_pred -cCC---CceEEEecccccCCC-CCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccch
Q 012612 214 -TAL---SNVYTFGPTFRAENS-NTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKG 288 (460)
Q Consensus 214 -~g~---~rvfeI~~~FR~E~~-~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~ 288 (460)
.+| +++|.-+++.|.++. .+.+|+-+|+|+|||......+..|+++++.++.++..+..... .+ ...
T Consensus 83 ~y~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~tV~~Iy~~ik~tE~-~~--~~~----- 154 (330)
T 12as_A 83 QHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIKATEA-AV--SEE----- 154 (330)
T ss_dssp HTTCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHHHHHHHHHHHH-HH--HHH-----
T ss_pred hCCCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHHHHHHHHHHHHHHH-HH--HHH-----
Confidence 458 999999999997544 68999999999999999998899999999998888877653311 00 000
Q ss_pred hHhhhhhhhcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCc---ccccccc
Q 012612 289 IIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK---AFYMRQN 365 (460)
Q Consensus 289 ~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~---pf~~~~~ 365 (460)
+ .+...+..++..++.+|+.+. ++..-.++.|..+...+ .+|||++.|..++ |.-.+..
T Consensus 155 y--~l~p~Lp~~i~fitsqeL~~~-------------YP~lt~keRE~~i~ke~---gaVFii~IG~~L~~g~~HD~RaP 216 (330)
T 12as_A 155 F--GLAPFLPDQIHFVHSQELLSR-------------YPDLDAKGRERAIAKDL---GAVFLVGIGGKLSDGHRHDVRAP 216 (330)
T ss_dssp S--CCCCCSCSSCEEEEHHHHHHH-------------SSSSCHHHHHHHHHHHH---SEEEEECCSSCCSSSCCSSCCCT
T ss_pred h--ccCcCCCCceEEEeHHHHHHH-------------cCCCChHHHHHHHHHhh---CCEEEEecCCccCCCCcCcCcCC
Confidence 0 011224456677788886433 23333345566666544 6999999997654 2222222
Q ss_pred CCccce---------eeeeccc-----CCceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcC-CCCCcceec
Q 012612 366 DDGRTV---------AAMDMLV-----PRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYG-SVPHAGFGL 430 (460)
Q Consensus 366 ~~~~~~---------~~fDl~~-----~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G-~pp~~G~gi 430 (460)
+.+.+. .+.||++ .+..||.++++| .|++.+.++++..|.+....-+|.+++..| +|++.|.||
T Consensus 217 DYDDW~t~~~~~~~gLNGDilvw~~vl~~a~ElSSMGIR-Vd~~~L~~QL~~~g~~er~~~~yh~~ll~g~LP~TiGGGI 295 (330)
T 12as_A 217 DYDDWSTPSELGHAGLNGDILVWNPVLEDAFELSSMGIR-VDADTLKHQLALTGDEDRLELEWHQALLRGEMPQTIGGGI 295 (330)
T ss_dssp TTBCCSSBCTTSSBCSEEEEEEEETTTTEEEEEEEEEEB-CCHHHHHHHHHHHTCTTGGGSHHHHHHHTTCSCCEEEEEE
T ss_pred CCCCccccccccccCccceEEEeccccCceeEEecceEE-eCHHHHHHHHHHcCCChhhccHHHHHHHcCCCCccccccc
Confidence 334566 8899998 355799999999 899999999999998777777899888888 599999999
Q ss_pred cHHHHHHHHcCCCCcccccc
Q 012612 431 GFERLVQFATGVENIRDAIP 450 (460)
Q Consensus 431 GidRL~m~l~~~~~Irdv~~ 450 (460)
|.+||+|+||+..+|-||++
T Consensus 296 GQSRLcmflL~k~HIGEVQ~ 315 (330)
T 12as_A 296 GQSRLTMLLLQLPHIGQVQA 315 (330)
T ss_dssp EHHHHHHHHHTCSCGGGTSC
T ss_pred cHHHHHHHHhccchhheeec
Confidence 99999999999999999975
|
| >3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-25 Score=219.49 Aligned_cols=152 Identities=15% Similarity=0.205 Sum_probs=118.0
Q ss_pred CCCCceEEEEEeEEEEEecCCCCCCCCccccChhhhhccccccCCChhhhHHHHH-----HHHHHHHHHHhhhhCCceee
Q 012612 96 QGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARV-----RNALAYATHKFFQENGFIWI 170 (460)
Q Consensus 96 ~~~~~~~El~~~~i~ils~~~~~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~-----Rs~i~~~iR~ff~~~gF~EV 170 (460)
+++.+++||.|+++++||+|..++|++.+++ ...+++||||+|++.++++++. ++++.+.+|++|.+.||.||
T Consensus 21 ~~~~~~~ei~~~~~~vl~~a~~~~P~~~~~~--~~~l~~r~l~~R~~~~~~i~~~g~~~~~~~i~~~ir~~l~~~Gf~EV 98 (290)
T 3qtc_A 21 ASAPALTKSQTDRLEVLLNPKDEISLNSGKP--FRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEI 98 (290)
T ss_dssp ---CCCCHHHHHHHHHHCCTTCC----CCSC--HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCEEE
T ss_pred cCCCceEEEEhhhhhhhccCCCCCCCCcchh--hhhhhhHHHHhccchHHHHhccccccHHHHHHHHHHHHHHHCCCEEE
Confidence 3456789999999999999987788876554 2366899999999999999999 99999999999999999999
Q ss_pred cCceeecCCCCC-----CCCceeeeccccCCcccccc--ccHHHHHHHH--h---cCCCceEEEecccccCCCCCCCCCC
Q 012612 171 SSPIITASDCEG-----AGEQFCVTTLDFFEKPAFLT--VSGQLNAETY--A---TALSNVYTFGPTFRAENSNTSRHLA 238 (460)
Q Consensus 171 ~TPiL~~~~~eg-----~~~~F~v~~~~~~~~~~~L~--~Spql~l~l~--~---~g~~rvfeI~~~FR~E~~~~~rHl~ 238 (460)
.||+|++..... ...+.. ....+++...+|+ +||++++.+. . .+..|+||||+|||+|+. +.+|++
T Consensus 99 ~Tp~l~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~LR~slsp~L~~~l~~n~~~~~~p~rlfeiG~vFR~E~~-~~~~~~ 176 (290)
T 3qtc_A 99 KSPILIPLEYIERMGIDNDTELS-KQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESD-GKEHLE 176 (290)
T ss_dssp CCCSEEETHHHHHTTCCTTSSGG-GGCCEETTTEEECSCSHHHHHHHHHHHTTTSCSSEEEEEEEEEECCCSC-SSSCCS
T ss_pred ECCceeeHHHHHhcCCCcCCchh-hhheeeCCCeeEcccChHHHHHHHHHhhccCCCCeEEEEEcCEEecCCC-CCcCcc
Confidence 999999864310 111111 1113557789999 9999997542 2 456899999999999976 678999
Q ss_pred ccceeeeeecCCC
Q 012612 239 EFWMIEPELAFAD 251 (460)
Q Consensus 239 EFt~lE~e~~~~~ 251 (460)
||||+|+++++.+
T Consensus 177 Ef~ql~~~~~g~~ 189 (290)
T 3qtc_A 177 EFTMLVFWQMGSG 189 (290)
T ss_dssp EEEEEEEEEESTT
T ss_pred hheEEEEEEEcCC
Confidence 9999999998754
|
| >3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-17 Score=161.31 Aligned_cols=188 Identities=17% Similarity=0.259 Sum_probs=120.8
Q ss_pred HHHHHHHHHHhhhhCCceeecCceeecCCC---CCC-C--CceeeeccccCCccccccc--cHHHHH--HHHhcCCC---
Q 012612 151 RNALAYATHKFFQENGFIWISSPIITASDC---EGA-G--EQFCVTTLDFFEKPAFLTV--SGQLNA--ETYATALS--- 217 (460)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg~-~--~~F~v~~~~~~~~~~~L~~--Spql~l--~l~~~g~~--- 217 (460)
..++.+.+|++|.+.||.||.||.|.+... .|. . +.+.+. +..+...+|++ +|.+.. +.....-+
T Consensus 73 ~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~--npl~e~~~LRp~l~p~l~~~~r~~~~~~~~Pl 150 (288)
T 3dsq_A 73 LLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQV--FWLDGKKCLRPMLAPNLYTLWRELERLWDKPI 150 (288)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTS--CEEETTEEECSCSHHHHHHHHHHHTTTSCSCE
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEee--cccccchhhhhcChHHHHHHHHHHHhCCCCCE
Confidence 367899999999999999999999987321 111 1 222111 22335678884 566542 33333334
Q ss_pred ceEEEecccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhhhhhhh
Q 012612 218 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA 297 (460)
Q Consensus 218 rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 297 (460)
|+|++|+|||+|.. +..|.+||+|+|++....+.
T Consensus 151 rlfeiG~vFR~E~~-~~~r~~EF~qle~~i~g~~~--------------------------------------------- 184 (288)
T 3dsq_A 151 RIFEIGTCYRKESQ-GAQHLNEFTMLNLTELGTPL--------------------------------------------- 184 (288)
T ss_dssp EEEEEEEEECSCCS-SSCCCSEEEEEEEEEETCCG---------------------------------------------
T ss_pred EEEEEeeEEecCCC-CCCcCccEEEEEEEEEcCCc---------------------------------------------
Confidence 89999999999987 56789999999999854310
Q ss_pred cCCCcccCHHHHHHHHH----HHccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccccCCccceee
Q 012612 298 ERDFVQLSYTDAIELLI----KAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAA 373 (460)
Q Consensus 298 ~~~~~~i~~~ea~~~l~----~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~~~~~~ 373 (460)
.+++.+++.++. +.|++ . || |..+ +..-.+.+
T Consensus 185 -----~~~f~elkg~le~ll~~LGl~--------------------------~------~~-----~~~~--s~e~~~~~ 220 (288)
T 3dsq_A 185 -----EERHQRLEDMARWVLEAAGIR--------------------------E------FE-----LVTE--SSVVYGDT 220 (288)
T ss_dssp -----GGHHHHHHHHHHHHHHHHTCC--------------------------C------CE-----EEEC--CCCSSCCC
T ss_pred -----hhhHHHHHHHHHHHHHHcCCC--------------------------C------cE-----EecC--CcceEEEE
Confidence 012222222222 11110 0 00 0000 00112456
Q ss_pred eecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcC-CCCCcceeccHHHHHHHHcCCCCcccccccc
Q 012612 374 MDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYG-SVPHAGFGLGFERLVQFATGVENIRDAIPFP 452 (460)
Q Consensus 374 fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G-~pp~~G~giGidRL~m~l~~~~~Irdv~~FP 452 (460)
+|++++|. ||++|+++.+..+. ++| .|||+|||||+|||+|+++|.+|||++....
T Consensus 221 ~~l~~~~~-eig~~Gv~p~vl~~----------------------~~gi~~~~~gfglglerl~m~~~g~~~iR~~~~~~ 277 (288)
T 3dsq_A 221 VDVMKGDL-ELASGAMGPHFLDE----------------------KWEIFDPWVGLGFGLERLLMIREGTQHVQSMARSL 277 (288)
T ss_dssp EEEEETTE-EEEEEEEESCTTTT----------------------TTTCCSCEEEEEEEHHHHHHHHHTCSCGGGGSSCS
T ss_pred EEEEeCCE-EEEEEEecHHHHHH----------------------hcCCCCCeEEEEECHHHHHHHHcCCchhhcCCCCc
Confidence 88999995 99999966544311 667 5799999999999999999999999987544
Q ss_pred C
Q 012612 453 R 453 (460)
Q Consensus 453 r 453 (460)
-
T Consensus 278 ~ 278 (288)
T 3dsq_A 278 S 278 (288)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.1e-15 Score=148.64 Aligned_cols=114 Identities=16% Similarity=0.154 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhhhhCCceeecCceeecCCC--CC----C-------CCceeeecccc---------CCcccccc--ccHH
Q 012612 151 RNALAYATHKFFQENGFIWISSPIITASDC--EG----A-------GEQFCVTTLDF---------FEKPAFLT--VSGQ 206 (460)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--eg----~-------~~~F~v~~~~~---------~~~~~~L~--~Spq 206 (460)
.+++++.||++|...||.||.+|.+.+... +. . .+.|.+..... -.....|| +||.
T Consensus 103 ~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp~ 182 (350)
T 1b7y_A 103 ITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPM 182 (350)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTHH
T ss_pred HHHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccchHH
Confidence 356889999999999999999999976210 11 0 33454532100 01223344 5565
Q ss_pred HHHHHHhcCC--CceEEEecccccCCCCCCCCCCccceeeeeecCC--CHHHHHHHHHHHHHHH
Q 012612 207 LNAETYATAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 266 (460)
Q Consensus 207 l~l~l~~~g~--~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~--~~~~~~~~~e~li~~l 266 (460)
+. ++|..+- -|+|+||+|||+|+. +.+|+|||+|+|++.... |+.+++..++.+++.+
T Consensus 183 ll-r~l~~~~~piriFEiGrVFR~d~~-d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~l 244 (350)
T 1b7y_A 183 QV-RYMVAHTPPFRIVVPGRVFRFEQT-DATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQAL 244 (350)
T ss_dssp HH-HHHHHCCSSEEEEEEEEEECCCCC-CSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred HH-HHHHhcCCCeeEEEeeeEEECCCC-CCCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhh
Confidence 53 6655543 379999999999876 467999999999999876 6778777777666554
|
| >2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.9e-14 Score=138.35 Aligned_cols=116 Identities=9% Similarity=0.054 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeec-------cccCCccccccccHHHH-HHHHhcC----CC
Q 012612 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTT-------LDFFEKPAFLTVSGQLN-AETYATA----LS 217 (460)
Q Consensus 150 ~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~-------~~~~~~~~~L~~Spql~-l~l~~~g----~~ 217 (460)
-.+++.+.||++|...||.||++|.+.+....-..-.|...+ .-+.+....||+|.-.. +++++.+ -.
T Consensus 54 ~~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~e~~vLRtsl~p~ll~~l~~N~~~~~~ 133 (294)
T 2rhq_A 54 PLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQARTMEKRNGQGPV 133 (294)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSSSSEEECSSSHHHHHHHHHHTTTCSCE
T ss_pred HHHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEcCcceeeccCHHHHHHHHHhcCCCCCc
Confidence 356789999999999999999999887631100000011000 01122345677666555 4777766 67
Q ss_pred ceEEEecccccCCCCCCCCCCccceeeeeecC--CCHHHHHHHHHHHHHHH
Q 012612 218 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQYV 266 (460)
Q Consensus 218 rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~--~~~~~~~~~~e~li~~l 266 (460)
|+||||+|||+++. +.+|+|||+|||++++. .|+.+++..+|.++..+
T Consensus 134 riFEiG~Vfr~d~~-d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l 183 (294)
T 2rhq_A 134 KIICPGKVYRRDSD-DATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKL 183 (294)
T ss_dssp EEEEEEEEECCCCC-BTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cEEEEcCEEecCCC-CCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 89999999998765 46799999999999988 47888888777777654
|
| >3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.7e-13 Score=131.08 Aligned_cols=106 Identities=18% Similarity=0.283 Sum_probs=72.0
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecCCC--CCC-----------CCceeeeccccCCccccccc--cHHHHHHHHhcCC
Q 012612 152 NALAYATHKFFQENGFIWISSPIITASDC--EGA-----------GEQFCVTTLDFFEKPAFLTV--SGQLNAETYATAL 216 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~--eg~-----------~~~F~v~~~~~~~~~~~L~~--Spql~l~l~~~g~ 216 (460)
+++...||++|...||.|+.+|.+.+..- +.- .+.| |.+....||+ ||.+ ++.|..+-
T Consensus 110 ~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~------~i~e~~vLRThtsp~~-lr~l~~~~ 182 (327)
T 3pco_A 110 TRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTF------WFDTTRLLRTQTSGVQ-IRTMKAQQ 182 (327)
T ss_dssp HHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCC------BSSSSCEECSCTHHHH-HHHHTTCC
T ss_pred HHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccE------EeCCCceecccCCHHH-HHHHHhCC
Confidence 45788999999999999999998865321 111 0122 2233445654 5544 46666554
Q ss_pred C--ceEEEecccccCCCCCCCCCCccceeeeeecC--CCHHHHHHHHHHHHHHH
Q 012612 217 S--NVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQYV 266 (460)
Q Consensus 217 ~--rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~--~~~~~~~~~~e~li~~l 266 (460)
. |+|++|+|||++ . +.+|+|+|+|+|..... .++.++...++.+++.+
T Consensus 183 ~pirifeiGrVyR~d-~-d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~l 234 (327)
T 3pco_A 183 PPIRIIAPGRVYRND-Y-DQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNF 234 (327)
T ss_dssp SSCCBCCEECCBCSC-C-BTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred CCeeEEeeccEEecC-C-CcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 4 899999999997 4 67899999999976653 35666666666665554
|
| >3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.4e-10 Score=118.52 Aligned_cols=99 Identities=21% Similarity=0.280 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhhhhCCceeecC-ceeecC--------CC--CCC---CCceeeecccc--------------------
Q 012612 149 RVRNALAYATHKFFQENGFIWISS-PIITAS--------DC--EGA---GEQFCVTTLDF-------------------- 194 (460)
Q Consensus 149 ~~Rs~i~~~iR~ff~~~gF~EV~T-PiL~~~--------~~--eg~---~~~F~v~~~~~-------------------- 194 (460)
---+++...||++|...||.||.| |.+... .+ -.+ .|.|.+.....
T Consensus 225 HPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~He~g~ 304 (508)
T 3l4g_A 225 HPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQGG 304 (508)
T ss_dssp CHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhhhhhccc
Confidence 344678899999999999999875 766542 11 112 23466542100
Q ss_pred CC-------------ccccccccHHHH-HHHHhc-----CC--CceEEEecccccCCCCCCCCCCccceeeeeec
Q 012612 195 FE-------------KPAFLTVSGQLN-AETYAT-----AL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELA 248 (460)
Q Consensus 195 ~~-------------~~~~L~~Spql~-l~l~~~-----g~--~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~ 248 (460)
++ ....||++---. ++.|.. +. -|+|+||+|||+|.. +.+|+|+|+|+|....
T Consensus 305 ~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~-DatHlpeFhQlegl~~ 378 (508)
T 3l4g_A 305 YGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETL-DATHLAEFHQIEGVVA 378 (508)
T ss_dssp TTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCC-CSSSCSEEEEEEEEEE
T ss_pred cCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCC-CCCcCCeEEEEEEEEE
Confidence 00 234566544333 243321 22 379999999999987 5789999999998764
|
| >3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A | Back alignment and structure |
|---|
Probab=98.52 E-value=2e-07 Score=95.25 Aligned_cols=95 Identities=12% Similarity=0.178 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhhhC--------CceeecC-ceeecC-CC-CCCCCceeeec-----c--ccCCccccccccHHHHH-HHH
Q 012612 152 NALAYATHKFFQEN--------GFIWISS-PIITAS-DC-EGAGEQFCVTT-----L--DFFEKPAFLTVSGQLNA-ETY 212 (460)
Q Consensus 152 s~i~~~iR~ff~~~--------gF~EV~T-PiL~~~-~~-eg~~~~F~v~~-----~--~~~~~~~~L~~Spql~l-~l~ 212 (460)
+.+...||++|... ||.|+.+ |.+.+. .. +... ++..+ . -|.+...-||++---++ ++|
T Consensus 51 ~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~--~p~dHpaR~~~Dtfyi~~~~vLRThts~~~~~~l 128 (415)
T 3cmq_A 51 WLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLL--IPADHPSRKKGDNYYLNRTHMLRAHTSAHQWDLL 128 (415)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGT--CCTTCGGGCGGGSCBSSSSEEECSSGGGGHHHHH
T ss_pred HHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhC--CCCCCCcccccceEEecCCeEEcCCCcHHHHHHH
Confidence 34666677777666 8999998 555541 11 1100 00000 0 13355566765433332 566
Q ss_pred hcCCCceEEEecccccCCCCCCCCCCccceeeeeecC
Q 012612 213 ATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 249 (460)
Q Consensus 213 ~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~ 249 (460)
..+..|+|++|.|||.+.. +..|.|+|.|+|--.-|
T Consensus 129 ~~~~~k~~~~G~VyR~D~~-da~h~n~fhQ~egv~lf 164 (415)
T 3cmq_A 129 HAGLDAFLVVGDVYRRDQI-DSQHYPIFHQLEAVRLF 164 (415)
T ss_dssp HTTCSEEEEEEEEECCCCC-BTTBCSEEEEEEEEEEE
T ss_pred HHCCCCEEEeeeEEeccch-hhhhhHHhcCCCcEEEE
Confidence 6677899999999999977 57899999999965543
|
| >2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.6e-06 Score=90.46 Aligned_cols=47 Identities=21% Similarity=0.348 Sum_probs=34.4
Q ss_pred ceEEEecccccCCCCCCCCCCccceeeeeecCC--CHHHHHHHHHHHHH
Q 012612 218 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQ 264 (460)
Q Consensus 218 rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~--~~~~~~~~~e~li~ 264 (460)
|+|+||+|||.+...+..|.+||+|++..+... ++.+++..++.++.
T Consensus 207 rLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~ 255 (534)
T 2du3_A 207 KLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLR 255 (534)
T ss_dssp EEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHG
T ss_pred eEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 799999999986541356999999999988763 45555555554443
|
| >2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.31 E-value=5.9e-06 Score=86.15 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=30.9
Q ss_pred ceEEEecccccCCCCCCCCCCccceeeeeecCC--CHHHHHHHHHH
Q 012612 218 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATA 261 (460)
Q Consensus 218 rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~--~~~~~~~~~e~ 261 (460)
|+|++|+|||++...+.+|.+||+|++.-+... ++.++...+|.
T Consensus 219 rlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ 264 (549)
T 2du7_A 219 KLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEG 264 (549)
T ss_dssp EEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHH
Confidence 699999999986541246999999999887653 34444443333
|
| >2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=3e-06 Score=87.98 Aligned_cols=117 Identities=16% Similarity=0.146 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCC----CC----CCCCceeeeccccCCccccccccH-HHHH---HH
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD----CE----GAGEQFCVTTLDFFEKPAFLTVSG-QLNA---ET 211 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~----~e----g~~~~F~v~~~~~~~~~~~L~~Sp-ql~l---~l 211 (460)
.-.-.+++.+|.+.+|+.|.+.||.||.||++.+.. ++ -..+.|.+. +--++.++|+... +..- +.
T Consensus 63 lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~~--d~~~~~~~LrPt~ee~t~~i~r~ 140 (458)
T 2i4l_A 63 LPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIA--DRHKRELLYGPTNEEMITEIFRA 140 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEE--CTTCCEEEECSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceEEEE--eCCCCeEEECCCChHHHHHHHHH
Confidence 345688899999999999999999999999998843 11 123456553 3346788888642 2221 22
Q ss_pred HhcC---C-CceEEEecccccC-CCCCC-CCCCccceeeeeecCCCHHHHHHHHHHH
Q 012612 212 YATA---L-SNVYTFGPTFRAE-NSNTS-RHLAEFWMIEPELAFADLKDDMACATAY 262 (460)
Q Consensus 212 ~~~g---~-~rvfeI~~~FR~E-~~~~~-rHl~EFt~lE~e~~~~~~~~~~~~~e~l 262 (460)
.+.. + -|+|+|++|||+| ..+.. --..||+|.|+|.-..+..++-..+..+
T Consensus 141 ~~~s~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~ 197 (458)
T 2i4l_A 141 YIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKM 197 (458)
T ss_dssp HCCBGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHhhccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHHHH
Confidence 2222 2 4899999999999 43211 0237999999999766666554444433
|
| >1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=2.4e-06 Score=87.14 Aligned_cols=115 Identities=12% Similarity=0.133 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---CC-----CCCceeeeccccCCccccccccHHHHH-HHHhcC
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLDFFEKPAFLTVSGQLNA-ETYATA 215 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg-----~~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~~g 215 (460)
-.-.+++..|.+.+|+.|.+.||.||.||+|.+..- .| ..+.|.+ +--+..++|+...+... .+.+..
T Consensus 27 P~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~~---d~~~~~~~LrP~~~~~~~~~~~~~ 103 (401)
T 1evl_A 27 NDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTT---SSENREYCIKPMNCPGHVQIFNQG 103 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCEE---EETTEEEEECSCSHHHHHHHHTSS
T ss_pred chHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEeE---ecCCceEEEcCCCCHHHHHHHHhh
Confidence 346788899999999999999999999999998531 01 1234542 23367788887665543 333322
Q ss_pred ------C-CceEEEecccccCCC--CCC--CCCCccceeeeeecCCCHHHHHHHHHHHHH
Q 012612 216 ------L-SNVYTFGPTFRAENS--NTS--RHLAEFWMIEPELAFADLKDDMACATAYLQ 264 (460)
Q Consensus 216 ------~-~rvfeI~~~FR~E~~--~~~--rHl~EFt~lE~e~~~~~~~~~~~~~e~li~ 264 (460)
+ -|+|+||+|||+|.+ ... | .-||+|.|+|. |.+.+++....++++.
T Consensus 104 ~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R-~reF~q~d~~~-f~~~~~~~~e~~e~i~ 161 (401)
T 1evl_A 104 LKSYRDLPLRMAEFGSCHRNEPSGSLHGLMR-VRGFTQDDAHI-FCTEEQIRDEVNGCIR 161 (401)
T ss_dssp CCBGGGCSEEEEEEEEEECCCCGGGCBTTTB-CSEEEEEEEEE-EECGGGHHHHHHHHHH
T ss_pred hhhhhhCChhhccccceecCCCCcccccccc-cCcEEecceEE-eCCHHHHHHHHHHHHH
Confidence 2 389999999999975 222 3 36999999995 6665555444444443
|
| >2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.5e-06 Score=87.46 Aligned_cols=117 Identities=14% Similarity=0.167 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC--------CCCCCceeeeccccCCccccccccHHHHH-HHHhc
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC--------EGAGEQFCVTTLDFFEKPAFLTVSGQLNA-ETYAT 214 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--------eg~~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~~ 214 (460)
...-.+++..|.+.+++.+.+.||.||.||+|..... ....+.|.+ .+..+||+...+... .+...
T Consensus 168 ~p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~-----~~~~l~LrPt~e~~i~~~~~~ 242 (425)
T 2dq3_A 168 AGWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKC-----ERDNLYLIPTAEVPLTNLYRE 242 (425)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBC-----TTTCCEECSSTHHHHHGGGTT
T ss_pred CcHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcChhhheEe-----cCCeEEEcCCCcHHHHHHHHh
Confidence 3457788999999999999999999999999998542 111234433 256788886555433 22211
Q ss_pred ------CC-CceEEEecccccCCCCCC--C----CCCccceeeeeecCCCHHHHHHHHHHHHHHH
Q 012612 215 ------AL-SNVYTFGPTFRAENSNTS--R----HLAEFWMIEPELAFADLKDDMACATAYLQYV 266 (460)
Q Consensus 215 ------g~-~rvfeI~~~FR~E~~~~~--r----Hl~EFt~lE~e~~~~~~~~~~~~~e~li~~l 266 (460)
.+ -|+|++++|||+|.+... + -.-||+|.|++. |.+-++..+..++++...
T Consensus 243 ~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~-f~~pe~s~~~~~e~i~~~ 306 (425)
T 2dq3_A 243 EILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVK-IVHPDTSYDELEKLVKDA 306 (425)
T ss_dssp EEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred hccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEE-ECCHHHHHHHHHHHHHHH
Confidence 12 479999999999975211 1 135999999976 555555655555555443
|
| >1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.4e-05 Score=79.71 Aligned_cols=104 Identities=15% Similarity=0.127 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCC-------C---CCCCCceeeeccccCCccccccccHHHH-HHHHh
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD-------C---EGAGEQFCVTTLDFFEKPAFLTVSGQLN-AETYA 213 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~-------~---eg~~~~F~v~~~~~~~~~~~L~~Spql~-l~l~~ 213 (460)
-.-.+.+..|.+.+|+.|.+.||.||.||++.... + ....+.|.+. +--++.+.|+.-.-.. -++.+
T Consensus 33 P~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~--D~~g~~l~LRpd~T~~~aR~~~ 110 (344)
T 1z7m_A 33 LNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFI--KHEGQSITLRYDFTLPLVRLYS 110 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEE--CTTCCEEEECCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEE--CCCCCEEecCCCCcHHHHHHHH
Confidence 34577889999999999999999999999998732 1 1223556543 3346666776422222 24333
Q ss_pred c-C---CCceEEEecccccCCCCCCCCCCccceeeeeecCCC
Q 012612 214 T-A---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 214 ~-g---~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~ 251 (460)
. . --|.|+|++|||+|.+... +.-||+|+++|.-..+
T Consensus 111 ~~~~~~P~rl~y~g~vfR~e~p~~g-R~REF~Q~g~ei~g~~ 151 (344)
T 1z7m_A 111 QIKDSTSARYSYFGKIFRKEKRHKG-RSTENYQIGIELFGES 151 (344)
T ss_dssp TCCSCCCEEEEEEEECCCCCC--------CCEEEEEEEESSC
T ss_pred hcCCCCCeEEEEECcEEccCCCCCC-CcceeEEEEEEEEcCC
Confidence 2 2 2489999999999977433 5689999999986655
|
| >3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=6.1e-06 Score=85.56 Aligned_cols=123 Identities=19% Similarity=0.137 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHHHHHHhh-hhCCceeecCceeecCCC---CCC-----CCceeeeccccCCccccccccHHHHH-HHHh
Q 012612 144 FGAVARVRNALAYATHKFF-QENGFIWISSPIITASDC---EGA-----GEQFCVTTLDFFEKPAFLTVSGQLNA-ETYA 213 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff-~~~gF~EV~TPiL~~~~~---eg~-----~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~ 213 (460)
.-.-.+++..|.+.+|+.+ .+.||.||.||+|..... -|. .+.|.++..+--+..++|+...+... .+..
T Consensus 60 lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~ 139 (460)
T 3uh0_A 60 LPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFG 139 (460)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHHHH
Confidence 3456888999999999999 999999999999987431 121 23454432111246788876555443 3333
Q ss_pred cCC-------CceEEEecccccCCCC--CC--CCCCccceeeeeecCCCHHHHHHHHHHHHHHHHH
Q 012612 214 TAL-------SNVYTFGPTFRAENSN--TS--RHLAEFWMIEPELAFADLKDDMACATAYLQYVVR 268 (460)
Q Consensus 214 ~g~-------~rvfeI~~~FR~E~~~--~~--rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~ 268 (460)
... -|+|++++|||+|... .. | .-||+|.|++. |.+.+++.+.+++++..+..
T Consensus 140 ~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R-~ReF~q~d~~~-f~~~e~~~~e~~~~i~~~~~ 203 (460)
T 3uh0_A 140 KKDRSYNELPLRFSDFSPLHRNEASGALSGLTR-LRKFHQDDGHI-FCTPSQVKSEIFNSLKLIDI 203 (460)
T ss_dssp TSCCBGGGCSEEEEECCEEECCCCTTTCBTTTB-CSEEEEEEEEE-EECGGGHHHHHHHHHHHHHH
T ss_pred hccccccccCeEEEEecCeeeCCCCCCCCCcee-eeeEEEeeEEE-EcCHHHHHHHHHHHHHHHHH
Confidence 321 3799999999999762 11 2 25999999996 66666666665555544433
|
| >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.6e-05 Score=83.70 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=40.3
Q ss_pred cccc--cHHHHHH--HH-hcCC--CceEEEecccccCCCCCCCCCCccceeeeeecCC--CHHHHHHHHHHHH
Q 012612 200 FLTV--SGQLNAE--TY-ATAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYL 263 (460)
Q Consensus 200 ~L~~--Spql~l~--l~-~~g~--~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~--~~~~~~~~~e~li 263 (460)
.||+ +|-+..+ .+ ..+. -|+|++|+|||++...+.+|.+||+|++.-+... |+.|+...+|.++
T Consensus 201 VLRTsLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL 273 (648)
T 2odr_B 201 TLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLL 273 (648)
T ss_dssp EECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHH
Confidence 4554 5555433 33 2233 3689999999986531357999999999887653 4555544444443
|
| >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.7e-05 Score=83.55 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=40.3
Q ss_pred cccc--cHHHHHH--HH-hcCC--CceEEEecccccCCCCCCCCCCccceeeeeecCC--CHHHHHHHHHHHH
Q 012612 200 FLTV--SGQLNAE--TY-ATAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYL 263 (460)
Q Consensus 200 ~L~~--Spql~l~--l~-~~g~--~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~--~~~~~~~~~e~li 263 (460)
.||+ +|-+..+ .+ ..+. -|+|++|+|||++...+.+|.+||+|++.-+... |+.|+...+|.++
T Consensus 201 VLRTSLlPGLL~~lr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL 273 (665)
T 2odr_A 201 TLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLL 273 (665)
T ss_dssp EECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHH
Confidence 4554 5555433 33 2233 3689999999986531357999999999887653 4555544444443
|
| >1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=4.5e-06 Score=85.55 Aligned_cols=103 Identities=17% Similarity=0.238 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-----CCC-----CCceeeeccccCCccccccccHHHHH-HHHh-
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC-----EGA-----GEQFCVTTLDFFEKPAFLTVSGQLNA-ETYA- 213 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-----eg~-----~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~- 213 (460)
.-.+++..|.+.+|+.|.+.||.||.||+|..... ++. .+.|.+. +--+..++|+.-..... ++++
T Consensus 14 ~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~--D~~g~~~~Lrp~~t~~~~r~~~~ 91 (420)
T 1qe0_A 14 EDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFK--DKGDRSITLRPEGTAAVVRSYIE 91 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEEC--HHHHCCEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEE--cCCCCEEEeCCCChHHHHHHHHh
Confidence 45778899999999999999999999999988322 121 1345442 22245677774433322 3222
Q ss_pred ------cCC-CceEEEecccccCCCCCCCCCCccceeeeeecCCC
Q 012612 214 ------TAL-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 214 ------~g~-~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~ 251 (460)
..+ -|+|++++|||+|.... -+.-||+|+|+|.-..+
T Consensus 92 ~~~~~~~~lP~r~~~~g~vfR~E~~~~-gR~reF~q~~~e~~~~~ 135 (420)
T 1qe0_A 92 HKMQGNPNQPIKLYYNGPMFRYERKQK-GRYRQFNQFGVEAIGAE 135 (420)
T ss_dssp TTGGGCSSCSEEEEEEEEEECC--------CCEEEEEEEEEESCC
T ss_pred ccccccCCCCeEEEEecCEeecCCCcC-CCcccEEEeeEEEECCC
Confidence 122 48999999999997644 34679999999986654
|
| >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.8e-05 Score=83.49 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=40.3
Q ss_pred cccc--cHHHHHH--HH-hcCC--CceEEEecccccCCCCCCCCCCccceeeeeecCC--CHHHHHHHHHHHH
Q 012612 200 FLTV--SGQLNAE--TY-ATAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYL 263 (460)
Q Consensus 200 ~L~~--Spql~l~--l~-~~g~--~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~--~~~~~~~~~e~li 263 (460)
.||+ +|-+..+ .+ ..+. -|+|++|+|||++...+.+|.+||+|++.-+... |+.|+...+|.++
T Consensus 201 VLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL 273 (685)
T 2odr_D 201 TLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLL 273 (685)
T ss_dssp EECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHhCCCCCeEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHH
Confidence 4554 5555433 33 2233 3689999999986531357999999999887653 4555544444443
|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=1e-05 Score=87.57 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---CC-----CCCceeeeccccCC-ccccccccHHHHH-HHHh
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLDFFE-KPAFLTVSGQLNA-ETYA 213 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg-----~~~~F~v~~~~~~~-~~~~L~~Spql~l-~l~~ 213 (460)
.-.-.+++..|.+.+|+.|.+.||.||.||+|....- .| ..+.|.+. +--+ +.++|+.-..... ++.+
T Consensus 267 lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~~--d~~~~~~~~LrP~~~~~~~~~~~ 344 (645)
T 1nyr_A 267 LPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPM--QLDETESMVLRPMNCPHHMMIYA 344 (645)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCE--EETTTEEEEECSSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCcceeE--ecCCCeEEEeCCCCCHHHHHHHH
Confidence 4556889999999999999999999999999987531 01 12344432 2235 6778886554433 4443
Q ss_pred cC------C-CceEEEecccccCCCCCCCC----CCccceeeeeecCCCHHHHHHHHHHHHH
Q 012612 214 TA------L-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQ 264 (460)
Q Consensus 214 ~g------~-~rvfeI~~~FR~E~~~~~rH----l~EFt~lE~e~~~~~~~~~~~~~e~li~ 264 (460)
.. + -|+|+||+|||+|.+. .+| .-||||.|+|. |.+.+++.+...+++.
T Consensus 345 ~~~~syr~LPlrl~~~g~~fR~E~~~-~~~GL~R~ReF~Q~d~~~-f~~~~~~~d~~~e~i~ 404 (645)
T 1nyr_A 345 NKPHSYRELPIRIAELGTMHRYEASG-AVSGLQRVRGMTLNDSHI-FVRPDQIKEEFKRVVN 404 (645)
T ss_dssp TSCCBGGGCCEEEEEEEEEECCCCTT-TCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHH
T ss_pred hhhhhccCCCeEEEEeccEEecCCCc-cccCcceeeeEEEccEEE-EcCHHHHHHHHHHHHH
Confidence 32 1 3899999999999873 333 36999999998 6665555554444443
|
| >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.99 E-value=2e-05 Score=83.28 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=40.3
Q ss_pred cccc--cHHHHHH--HH-hcCC--CceEEEecccccCCCCCCCCCCccceeeeeecCC--CHHHHHHHHHHHH
Q 012612 200 FLTV--SGQLNAE--TY-ATAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYL 263 (460)
Q Consensus 200 ~L~~--Spql~l~--l~-~~g~--~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~--~~~~~~~~~e~li 263 (460)
.||+ +|-+..+ .+ ..+. -|+|++|+|||++...+.+|.+||+|++.-+... |+.|+...+|.++
T Consensus 201 VLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL 273 (701)
T 2odr_C 201 TLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLL 273 (701)
T ss_dssp EECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHhCCCCCeEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHH
Confidence 4554 5555433 33 2233 3689999999986531357999999999887653 4555544444443
|
| >1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A | Back alignment and structure |
|---|
Probab=97.98 E-value=2.2e-05 Score=81.69 Aligned_cols=117 Identities=16% Similarity=0.144 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-C--C------CCCceeeeccc--cCCccccccccHHH-----H
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G------AGEQFCVTTLD--FFEKPAFLTVSGQL-----N 208 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g------~~~~F~v~~~~--~~~~~~~L~~Spql-----~ 208 (460)
-.-.+++..|.+.+|+.|.+.||.||.||++.+..- . + ..+.|.++... -.+.+++|+.-.+. |
T Consensus 41 P~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~ 120 (477)
T 1hc7_A 41 PYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMW 120 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHHH
Confidence 345788899999999999999999999999998542 1 1 22455553210 01467888865542 3
Q ss_pred HHHHhc--CC-CceEEEecccccCCCCCC--CCCCccceeeeeecCCCHHHHHHHHHHH
Q 012612 209 AETYAT--AL-SNVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFADLKDDMACATAY 262 (460)
Q Consensus 209 l~l~~~--g~-~rvfeI~~~FR~E~~~~~--rHl~EFt~lE~e~~~~~~~~~~~~~e~l 262 (460)
.+.+.+ .+ -|+|||++|||+|..-.. | .-||+|.|++..+.+.++....+..+
T Consensus 121 ~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R-~REF~q~d~~~~~~~~~~ad~E~~~~ 178 (477)
T 1hc7_A 121 SKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLR-TSEFLWQEGHTAHATREEAEEEVRRM 178 (477)
T ss_dssp HHHCCBGGGCCEEEEEEEEEECCCSSCBTTTB-CSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HhhhhccccCCeeeEeecCEEeCCCCCCCcce-eEEEEEccEEEEeCCHHHHHHHHHHH
Confidence 332222 23 389999999999944112 3 25999999999888877776665555
|
| >2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=2.4e-05 Score=83.38 Aligned_cols=114 Identities=18% Similarity=0.170 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---CC-----CCCceeeeccccCCccccccccHHHHH-HHHhc
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLDFFEKPAFLTVSGQLNA-ETYAT 214 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg-----~~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~~ 214 (460)
.-.-.+++..|.+.+|+.|.+.||.||.||++..... .| ..+.|.+. +--+..++|+.-.+-.. .+...
T Consensus 43 lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~~--d~~~~~~~LrP~~~~~~~~~~~~ 120 (572)
T 2j3l_A 43 LPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLK--DRNDRDYILGPTHEETFTELIRD 120 (572)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEEE--CTTCCEEEECSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheEEEe--cCCCCeEEEccccHHHHHHHHHh
Confidence 3456888999999999999999999999999988531 01 22455543 33467788875443321 22221
Q ss_pred ------CC-CceEEEecccccCCCCCCCC----CCccceeeeeecCCCHHHHHHHHHH
Q 012612 215 ------AL-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMACATA 261 (460)
Q Consensus 215 ------g~-~rvfeI~~~FR~E~~~~~rH----l~EFt~lE~e~~~~~~~~~~~~~e~ 261 (460)
.+ -|+|++++|||+|.. + +| .-||+|.|+|.-..+..++.+.++.
T Consensus 121 ~~~s~~~lP~r~~~~g~~fR~E~~-~-~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~ 176 (572)
T 2j3l_A 121 EINSYKRLPLNLYQIQTKYRDEKR-S-RSGLLRGREFIMKDGYSFHADEASLDQSYRD 176 (572)
T ss_dssp HCCBGGGCCEEEEEEEEEECCCSS-C-CTGGGSCSEEEEEEEEEEESSHHHHHHHHHH
T ss_pred hccChhhcCHhhheecCeeccCcC-c-ccCccccceeEEeeeEEEcCCHHHHHHHHHH
Confidence 12 389999999999976 2 32 3699999999866666665555444
|
| >1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=3e-05 Score=79.79 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC------CC-CCCceeeeccccCCccccccccHHHHH-HHHhcC--
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC------EG-AGEQFCVTTLDFFEKPAFLTVSGQLNA-ETYATA-- 215 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~------eg-~~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~~g-- 215 (460)
.-.+++..|.+.+|+-|.+.||.||.||++..... +. ..+.|.+. +--++.+.|+.-.-... ++.+..
T Consensus 18 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~--D~~g~~l~LrPd~t~~~aR~~~~~~~ 95 (434)
T 1wu7_A 18 EDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFV--DKGGREVTLIPEATPSTVRMVTSRKD 95 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEE--CTTSCEEEECSCSHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEEE--CCCCCEEEeCCCChHHHHHHHHhcCC
Confidence 45788899999999999999999999999988422 11 22456553 33466677774333322 433322
Q ss_pred --C-CceEEEecccccCCCCCCCCCCccceeeeeecCCC
Q 012612 216 --L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 216 --~-~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~ 251 (460)
+ -|.|+|+++||+|.+... ..-||+|.++|.-..+
T Consensus 96 ~~lP~rl~~~g~vfR~erp~~g-R~REF~Q~d~ei~g~~ 133 (434)
T 1wu7_A 96 LQRPLRWYSFPKVWRYEEPQAG-RYREHYQFNADIFGSD 133 (434)
T ss_dssp CCSSEEEEECCEEECCCCSCSS-CCSEEEEEEEEEESCC
T ss_pred CCCCeEEEEEcCeecCCCCCCC-CccceEEeeEEEEcCC
Confidence 1 389999999999977544 4579999999996655
|
| >3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=9.4e-06 Score=83.95 Aligned_cols=118 Identities=14% Similarity=0.218 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-CCCC-------CceeeeccccCCccccccccHHHHHHHHhcC-
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLDFFEKPAFLTVSGQLNAETYATA- 215 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~-------~~F~v~~~~~~~~~~~L~~Spql~l~l~~~g- 215 (460)
....+++..+++.+++.+.+.||.||.||.|.+... ++.+ +.|.++. -+.++||....+...-.+...
T Consensus 205 p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~---~~~~~~L~PTaE~~l~~l~~~~ 281 (484)
T 3lss_A 205 GGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSG---DGDKKYLIATSEMPIAAYHRGR 281 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEES---SSSCEEECSSTHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeec---CCcceEEeccCcHHHHHHHhcc
Confidence 557899999999999999999999999999998543 2221 4565532 156789988777765323222
Q ss_pred ------C-CceEEEecccccCCC-CC-C----CCCCccceeeeeecCCCHHH--HHHHHHHHHHHH
Q 012612 216 ------L-SNVYTFGPTFRAENS-NT-S----RHLAEFWMIEPELAFADLKD--DMACATAYLQYV 266 (460)
Q Consensus 216 ------~-~rvfeI~~~FR~E~~-~~-~----rHl~EFt~lE~e~~~~~~~~--~~~~~e~li~~l 266 (460)
+ =|+|++++|||+|-. .+ + --.-||+|.|++. |..-++ +.+..++++...
T Consensus 282 i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~-f~~pe~~~s~~e~e~~~~~~ 346 (484)
T 3lss_A 282 WFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFV-VCSPRQEESWRHLEDMITTS 346 (484)
T ss_dssp EESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEE-EECSSTTHHHHHHHHHHHHH
T ss_pred ccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEE-EeCcchHHHHHHHHHHHHHH
Confidence 1 369999999999963 11 1 1124999999985 555444 666666666543
|
| >1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A | Back alignment and structure |
|---|
Probab=97.90 E-value=3.4e-05 Score=78.99 Aligned_cols=103 Identities=20% Similarity=0.326 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---C-CC------CCceeeeccccCCccccccccHHHHH-HHHh-
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA------GEQFCVTTLDFFEKPAFLTVSGQLNA-ETYA- 213 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---e-g~------~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~- 213 (460)
.-.+++..|.+.+|+-|.+.||.||.||++..... . |. .+.|.+. +--++.+.|+.-.-... ++.+
T Consensus 15 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~--D~~g~~l~Lrpd~t~~~ar~~~~ 92 (421)
T 1h4v_B 15 KELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQ--DRGGRSLTLRPEGTAAMVRAYLE 92 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEE--CCCCCEEeeCCcchHHHHHHHHh
Confidence 35778899999999999999999999999987422 1 11 2456553 33466667764222222 3322
Q ss_pred cC------CCceEEEecccccCCCCCCCCCCccceeeeeecCCC
Q 012612 214 TA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 214 ~g------~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~ 251 (460)
.. --|.|+|+++||+|..... +.-||+|.++|.-..+
T Consensus 93 ~~~~~~~lP~rl~~~g~vfR~e~p~~g-R~REf~Q~g~e~~g~~ 135 (421)
T 1h4v_B 93 HGMKVWPQPVRLWMAGPMFRAERPQKG-RYRQFHQVNYEALGSE 135 (421)
T ss_pred ccccccCCCeEEEEecCeecCCCCCCC-CcccEEEccEEEECCC
Confidence 22 2489999999999977544 4579999999986554
|
| >2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A | Back alignment and structure |
|---|
Probab=97.89 E-value=1e-05 Score=83.66 Aligned_cols=121 Identities=15% Similarity=0.168 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-C--CCCCceeeeccccCCccccccccHHHHH-HHHhc------
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--GAGEQFCVTTLDFFEKPAFLTVSGQLNA-ETYAT------ 214 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g~~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~~------ 214 (460)
-.-.+++..|.+.+++.+.+.||.||.||+|..... + |..+-|.-.....-+.++||+...+... .+...
T Consensus 190 p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~d~~l~LrPt~e~~~~~~~~~~~~s~~ 269 (455)
T 2dq0_A 190 NEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKVEDEDLYLIPTAEHPLAGMHANEILDGK 269 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHHTCCBBTTSSCEECSSTHHHHHHTTTTEEEETT
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChHhhCeecCCcEEEcCcCcHHHHHHHHhCccCch
Confidence 456788899999999999999999999999998433 1 2222221100011246788887766654 33221
Q ss_pred CC-CceEEEecccccCCCCCC--C----CCCccceeeeeecCCCHHHHHHHHHHHHHHH
Q 012612 215 AL-SNVYTFGPTFRAENSNTS--R----HLAEFWMIEPELAFADLKDDMACATAYLQYV 266 (460)
Q Consensus 215 g~-~rvfeI~~~FR~E~~~~~--r----Hl~EFt~lE~e~~~~~~~~~~~~~e~li~~l 266 (460)
.+ -|+|++++|||+|..... + -.-||+|.|++ .|.+.++..+..++++...
T Consensus 270 ~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~-~f~~pe~s~~~~~e~l~~~ 327 (455)
T 2dq0_A 270 DLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQF-VYSRPEESWEWHEKIIRNA 327 (455)
T ss_dssp TCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEE-EEECTTTHHHHHHHHHHHH
T ss_pred hCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEE-EecCHHHHHHHHHHHHHHH
Confidence 12 379999999999975211 0 12499999998 4666677777777666543
|
| >1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=5.5e-05 Score=78.38 Aligned_cols=119 Identities=17% Similarity=0.145 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC----CC-----CCCceeeeccc--cCCccccccccHHHHH-HHH
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC----EG-----AGEQFCVTTLD--FFEKPAFLTVSGQLNA-ETY 212 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~----eg-----~~~~F~v~~~~--~~~~~~~L~~Spql~l-~l~ 212 (460)
-.-.+++..|.+.+|+.|.+.||.||.||++.+... -| ..+.|.++... -.+.+++|+...+... .+.
T Consensus 35 P~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~ 114 (459)
T 1nj8_A 35 PYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMM 114 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHHH
Confidence 456788999999999999999999999999987431 12 22456554210 0156788886555433 433
Q ss_pred hcC------C-CceEEEecccccCCC-CCC--CCCCccc-eeeeeecCCCHHHHHHHHHHHHH
Q 012612 213 ATA------L-SNVYTFGPTFRAENS-NTS--RHLAEFW-MIEPELAFADLKDDMACATAYLQ 264 (460)
Q Consensus 213 ~~g------~-~rvfeI~~~FR~E~~-~~~--rHl~EFt-~lE~e~~~~~~~~~~~~~e~li~ 264 (460)
+.- + -|+|||++|||+|.. ... | .-||+ |.|.+..+.+.++.....++++.
T Consensus 115 ~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R-~REF~qq~d~~~~~~~~~~a~~e~~~~i~ 176 (459)
T 1nj8_A 115 KLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIR-LREIMTFKEAHTAHSTKEEAENQVKEAIS 176 (459)
T ss_dssp HTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTB-CSBCSCEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHhhhhcccCCeEEEEEccEecCccCCCCCceE-eeeeeccCcEEEEECCHHHHHHHHHHHHH
Confidence 321 2 389999999999976 112 2 24999 99999988887777665444443
|
| >3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A | Back alignment and structure |
|---|
Probab=97.86 E-value=1.4e-05 Score=82.70 Aligned_cols=118 Identities=14% Similarity=0.183 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-C--C-----CCCceeeeccccCCccccccccHHHHHH-HHhcC
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLDFFEKPAFLTVSGQLNAE-TYATA 215 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g-----~~~~F~v~~~~~~~~~~~L~~Spql~l~-l~~~g 215 (460)
-.-.+++..+++.+++.+.+.||.||.||.|.+... + | ..+.|.++.. +.++||.-..+.-.- ++..-
T Consensus 182 p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~---~~~~~LipTaE~pl~~l~~~e 258 (485)
T 3qne_A 182 NYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDG---EDEKYLIATSEQPISAYHAGE 258 (485)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEET---TEEEEECSSTHHHHHHHTTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCC---CCeEEEeccccHHHHHHHhcc
Confidence 457889999999999999999999999999998543 1 1 1246666421 457788766666553 32221
Q ss_pred -CC--------ceEEEecccccCCCC------CCCCCCccceeeeeecCCCHHHHHHHHHHHHHHH
Q 012612 216 -LS--------NVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLKDDMACATAYLQYV 266 (460)
Q Consensus 216 -~~--------rvfeI~~~FR~E~~~------~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l 266 (460)
+. |+|++++|||+|-.. +---.-||+|.|.+. |...++..+..++++...
T Consensus 259 i~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~pe~s~~e~e~ml~~~ 323 (485)
T 3qne_A 259 WFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTEPEKSWEEFDRMIGCS 323 (485)
T ss_dssp EESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred ccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeCHHHHHHHHHHHHHHH
Confidence 22 599999999999641 101124999999986 666677777777766543
|
| >1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A | Back alignment and structure |
|---|
Probab=97.86 E-value=4e-05 Score=78.41 Aligned_cols=117 Identities=18% Similarity=0.245 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-C--CCC-----CceeeeccccCCccccccccHHHHH-HHHhcC
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--GAG-----EQFCVTTLDFFEKPAFLTVSGQLNA-ETYATA 215 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g~~-----~~F~v~~~~~~~~~~~L~~Spql~l-~l~~~g 215 (460)
-.-.+++..|.+.+++.+.+.||.||.||+|.+... . |.. +.|.+ -+.+++|+...+... .++..-
T Consensus 163 p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~-----~d~~l~L~Pt~e~~~~~~~~~~ 237 (421)
T 1ses_A 163 GDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAI-----AETDLYLTGTAEVVLNALHSGE 237 (421)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBB-----TTSSEEECSSTHHHHHHTTTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCchhcEEE-----cCCeEEEeecCcHHHHHHhccc
Confidence 457888999999999999999999999999987432 1 211 23333 145778887766654 232221
Q ss_pred ------C-CceEEEecccccCCCCCC--C----CCCccceeeeeecCCC-HHHHHHHHHHHHHHH
Q 012612 216 ------L-SNVYTFGPTFRAENSNTS--R----HLAEFWMIEPELAFAD-LKDDMACATAYLQYV 266 (460)
Q Consensus 216 ------~-~rvfeI~~~FR~E~~~~~--r----Hl~EFt~lE~e~~~~~-~~~~~~~~e~li~~l 266 (460)
+ -|+|++++|||+|-+... + -.-||+|.|++..-.. .++..+..++++...
T Consensus 238 ~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~ 302 (421)
T 1ses_A 238 ILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENA 302 (421)
T ss_dssp EEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHH
T ss_pred ccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 2 379999999999953110 1 1259999999875444 477777666666543
|
| >1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=3.4e-05 Score=79.06 Aligned_cols=103 Identities=16% Similarity=0.226 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---C-CC------CCceeeeccccCCccccccccHHHHH-HHHh-
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA------GEQFCVTTLDFFEKPAFLTVSGQLNA-ETYA- 213 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---e-g~------~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~- 213 (460)
.-.+++..|.+.+|+-|.+.||.||.||++..... . |. .+.|.+. +--++.+.|+.-.-... ++.+
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~--D~~g~~l~Lrpd~t~~~aR~~~~ 93 (423)
T 1htt_A 16 GETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFE--DRNGDSLTLRPEGTAGCVRAGIE 93 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEE--CTTSCEEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEE--cCCCCEEEeCCCchHHHHHHHHh
Confidence 45778899999999999999999999999987422 1 21 2466654 33466677764222222 3222
Q ss_pred cC-----CCceEEEecccccCCCCCCCCCCccceeeeeecCCC
Q 012612 214 TA-----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 214 ~g-----~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~ 251 (460)
.. --|.|+|+++||+|..... +.-||+|.++|.-..+
T Consensus 94 ~~~~~~~P~rl~~~g~vfR~e~p~~g-R~Ref~Q~d~e~~g~~ 135 (423)
T 1htt_A 94 HGLLYNQEQRLWYIGPMFRHERPQKG-RYRQFHQLGCEVFGLQ 135 (423)
T ss_dssp HTCSTTCCEEEEEEEEEECCCCCCSS-CCSEEEEEEEEEESCC
T ss_pred cccccCCCeEEEEEcCEecCCCCCCC-ccceeEEeeEEEECCC
Confidence 22 2489999999999977544 4589999999986654
|
| >4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.84 E-value=4.1e-05 Score=79.57 Aligned_cols=103 Identities=16% Similarity=0.232 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---C-CC------CCceeeeccccC-CccccccccHHHHH-HHH
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA------GEQFCVTTLDFF-EKPAFLTVSGQLNA-ETY 212 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---e-g~------~~~F~v~~~~~~-~~~~~L~~Spql~l-~l~ 212 (460)
-.-.+++..|.+.+|+.|.+.||.||.||++..... . |. .+.|.+. +-- ++.+.|+.-.-... +++
T Consensus 43 P~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~--D~~~g~~l~LRPd~t~~~ar~~ 120 (467)
T 4e51_A 43 PQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFV--DALNGENLTLRPENTAAVVRAA 120 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEE--CTTTCCEEEECSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEe--cCCCCCEEEeCcccHHHHHHHH
Confidence 345788999999999999999999999999987432 1 21 2456543 333 56677774332222 332
Q ss_pred hc-C-----CCceEEEecccccCCCCCCCCCCccceeeeeecCC
Q 012612 213 AT-A-----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 250 (460)
Q Consensus 213 ~~-g-----~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~ 250 (460)
+. . --|.|++++|||+|.+... +.-||+|+++|.-..
T Consensus 121 ~~~~~~~~lP~r~~~~g~vfR~E~~~~g-R~ReF~Q~d~ei~g~ 163 (467)
T 4e51_A 121 IEHNMLYDGPKRLWYIGPMFRHERPQRG-RYRQFHQVGVEALGF 163 (467)
T ss_dssp HHTTTTTTSCEEEEEEEEEECCCCC----CCSEEEEEEEEEETC
T ss_pred HHcccccCCCEEEEEEccEEccCCCCCC-CcCceEEEEEEEEeC
Confidence 22 1 2489999999999987544 457999999998544
|
| >1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=4.7e-05 Score=79.72 Aligned_cols=118 Identities=16% Similarity=0.161 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-CC--------CCCceeeeccc--cCCccccccccHHHHH-HHH
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EG--------AGEQFCVTTLD--FFEKPAFLTVSGQLNA-ETY 212 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg--------~~~~F~v~~~~--~~~~~~~L~~Spql~l-~l~ 212 (460)
-.-.+++..|.+.+|+.|.+ ||.||.||+|.+... .+ ..+.|.++... -.+.+++|+...+... .+.
T Consensus 68 P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~ 146 (501)
T 1nj1_A 68 PHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHH
Confidence 45677888999999999999 999999999998432 11 23466654210 0145788886555433 332
Q ss_pred h----c--CC-CceEEEecccccCCCCC-C--CCCCccc-eeeeeecCCCHHHHHHHHHHHHH
Q 012612 213 A----T--AL-SNVYTFGPTFRAENSNT-S--RHLAEFW-MIEPELAFADLKDDMACATAYLQ 264 (460)
Q Consensus 213 ~----~--g~-~rvfeI~~~FR~E~~~~-~--rHl~EFt-~lE~e~~~~~~~~~~~~~e~li~ 264 (460)
. . .+ -|+|++++|||+|..++ . | .-||+ |.|++..+.+.++..+.+++++.
T Consensus 147 ~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R-~REF~~q~e~~~~~~~~e~a~~e~~~~l~ 208 (501)
T 1nj1_A 147 ALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIR-VREITTFKEAHTIHATASEAEEQVERAVE 208 (501)
T ss_dssp HHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTB-CSEEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HhhhcccccCCEEEEeecCEeeCCCCCCCCCce-eEEEeeeeeEEEEECCHHHHHHHHHHHHH
Confidence 2 1 12 37999999999997521 1 2 24999 99999988888777766655554
|
| >3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.82 E-value=5.1e-05 Score=76.52 Aligned_cols=101 Identities=14% Similarity=0.084 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-----C-CC-CCceeeeccccCCccccccc--cHHHHHHHHh----
Q 012612 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-----E-GA-GEQFCVTTLDFFEKPAFLTV--SGQLNAETYA---- 213 (460)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-----e-g~-~~~F~v~~~~~~~~~~~L~~--Spql~l~l~~---- 213 (460)
-.+++..|.+.+|+.|.+.||.||.||++..... + .. .+.|.+. +--++.+.|+. .|++. ++++
T Consensus 36 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~~--D~~g~~l~LRpd~T~~~a-R~~~~~~~ 112 (373)
T 3rac_A 36 FAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRLF--DGGGDAVALRPEMTPSIA-RMAAPRVA 112 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCBCC--CCSSSCEEECSSSHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCCccchhceEEEE--CCCCCEEEECCcCHHHHH-HHHHhccc
Confidence 4678899999999999999999999999976321 1 12 3455432 23355566653 23332 2221
Q ss_pred --cCCCceEEEecccccCCC------CCCCCCCccceeeeeecCCC
Q 012612 214 --TALSNVYTFGPTFRAENS------NTSRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 214 --~g~~rvfeI~~~FR~E~~------~~~rHl~EFt~lE~e~~~~~ 251 (460)
..--|.|++++|||+|.. ... +.-||+|+++|.-..+
T Consensus 113 ~~~~P~r~~y~g~vfR~e~~g~~~~~~~g-R~ReF~Q~g~ei~g~~ 157 (373)
T 3rac_A 113 AGRTPIRWCYCERVYRRTDDPASLSWASG-KAAESTQVGIERIGEE 157 (373)
T ss_dssp TTCCCCEEEEEEEEEECC-------------CEEEEEEEEEECSSC
T ss_pred cCCCCeEEEEEcceEccCCCcccccccCC-ccceeEEeeeEEECCC
Confidence 123689999999999976 333 4579999999985443
|
| >3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.80 E-value=6.5e-05 Score=76.42 Aligned_cols=102 Identities=15% Similarity=0.117 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC------CCCCCceeeeccccCCccccccc--cHHHHHHHHhc---
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGAGEQFCVTTLDFFEKPAFLTV--SGQLNAETYAT--- 214 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~------eg~~~~F~v~~~~~~~~~~~L~~--Spql~l~l~~~--- 214 (460)
.-.+++..|.+.+|+.|...||.||.||++..... ....+.|.+. +--++.+.|+. .|++. ++++.
T Consensus 22 ~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f~--D~~g~~l~LRpd~T~~~a-R~~~~~~~ 98 (400)
T 3od1_A 22 EWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKLL--DQQGNTLVLRPDMTAPIA-RLVASSLK 98 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEEE--CTTSCEEEECSCSHHHHH-HHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccceEEEE--CCCCCEEEECCCCHHHHH-HHHHhhcc
Confidence 45778899999999999999999999999976432 1223455543 33455666663 22332 32222
Q ss_pred --CC-CceEEEecccccCCCCCCCCCCccceeeeeecCCC
Q 012612 215 --AL-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 215 --g~-~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~ 251 (460)
.. -|.|++++|||+|.+... +.-||+|+++|.-..+
T Consensus 99 ~~~~P~r~~y~g~vfR~e~~~~g-R~Ref~Q~g~ei~G~~ 137 (400)
T 3od1_A 99 DRAYPLRLAYQSNVYRAQQNEGG-KPAEFEQLGVELIGDG 137 (400)
T ss_dssp SSCSCEEEEEEEEEECCCC---C-CCSEEEEEEEEEESCC
T ss_pred cCCCCeEEEEEcCEEeCCCCCCC-CCCccEEeEEEEECCC
Confidence 22 489999999999977434 5589999999986554
|
| >3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} | Back alignment and structure |
|---|
Probab=97.80 E-value=4.4e-05 Score=79.33 Aligned_cols=118 Identities=14% Similarity=0.159 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeec------CCCCCCCC-ceeeecccc-------------CCccccccc--
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITA------SDCEGAGE-QFCVTTLDF-------------FEKPAFLTV-- 203 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~------~~~eg~~~-~F~v~~~~~-------------~~~~~~L~~-- 203 (460)
.-.+.+..+.+.+|+.|...||.||.||++.. + ++...+ .|.+...+. -+..+.|+.
T Consensus 24 ~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~-G~~~ke~m~~~~d~~~~g~~~~~~~~~~~~g~~l~LRpd~ 102 (465)
T 3net_A 24 SEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAK-GNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQ 102 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGG-GCC--CBEEEEEEEC----------------CCEEECSCS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhcc-CCCCccceEEEecccccccccccccccCCCCCEEEeCCCC
Confidence 45778899999999999999999999999843 3 333345 676542210 145666763
Q ss_pred cHHHHHHHHhc-----C-CCceEEEecccccCCCCCCCCCCccceeeeeecCCC--HH----HHHHHHHHHHHHH
Q 012612 204 SGQLNAETYAT-----A-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD--LK----DDMACATAYLQYV 266 (460)
Q Consensus 204 Spql~l~l~~~-----g-~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~--~~----~~~~~~e~li~~l 266 (460)
.+.+. ++++. . --|.|++++|||.|..... +.-||+|+++|.-..+ .. |++.++-++++.+
T Consensus 103 T~~~a-R~~~~~~~~~~~p~r~~y~g~vfR~e~~~~g-r~Ref~Q~g~ei~G~~~~~a~~DaEvi~l~~~~l~~l 175 (465)
T 3net_A 103 TVPLA-AYIARHLNDLTFPFARYQMDVVFRGERAKDG-RFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAV 175 (465)
T ss_dssp HHHHH-HHHHHHGGGSCSSEEEEECCEEECBC-------CCEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHH-HHHHhcccccCCCeEEEEeccEEecCCCCCC-CcceeEEeeEEEECCCCccchhhHHHHHHHHHHHHHc
Confidence 22222 22211 1 2389999999999977443 5579999999986542 12 4565555555443
|
| >3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00014 Score=75.25 Aligned_cols=101 Identities=14% Similarity=0.125 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC--CC-C----CCceeeeccccCCcccccccc--HHHHHHHHhc-C
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC--EG-A----GEQFCVTTLDFFEKPAFLTVS--GQLNAETYAT-A 215 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--eg-~----~~~F~v~~~~~~~~~~~L~~S--pql~l~l~~~-g 215 (460)
.-.+++..|.+.+|+.|...||.||.||++..... .+ + .+.|.+. +--++.+.|+.- |.+. ++.+. .
T Consensus 41 ~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~--D~~g~~l~LRpd~T~~~a-R~~~~~~ 117 (456)
T 3lc0_A 41 EAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFI--TKGGHRVALRPEMTPSLA-RLLLGKG 117 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEE--CSSSCEEEECSCSHHHHH-HHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEE--cCCCCEEecCCcCHHHHH-HHHHhcC
Confidence 34678899999999999999999999999987543 11 1 1355443 334566666632 2322 33322 2
Q ss_pred -----CCceEEEecccccCCCCCCCCCCccceeeeeecCC
Q 012612 216 -----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 250 (460)
Q Consensus 216 -----~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~ 250 (460)
--|.|++++|||+|.+... +.-||+|+++|.-..
T Consensus 118 ~~~~~P~r~~y~g~vfR~e~~~~g-R~ReF~Q~g~ei~G~ 156 (456)
T 3lc0_A 118 RSLLLPAKWYSIPQCWRYEAITRG-RRREHYQWNMDIVGV 156 (456)
T ss_dssp TTCCSSEEEEECCEEECCCC------CCEEEEEEEEEESC
T ss_pred cccCCCEEEEEeccEEecCCCCCC-CccceEEEEEEEEcC
Confidence 2479999999999987444 468999999998654
|
| >3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=97.68 E-value=9e-05 Score=77.55 Aligned_cols=123 Identities=16% Similarity=0.159 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---CC------CCCceeeeccc--cCCccccccccHHHHH-HH
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG------AGEQFCVTTLD--FFEKPAFLTVSGQLNA-ET 211 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg------~~~~F~v~~~~--~~~~~~~L~~Spql~l-~l 211 (460)
.-.-.+++..|.+.+|+.|.+.||.||.||+|.+... ++ ..+.|.++... -.+.+++|+...+... .+
T Consensus 51 lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~ 130 (518)
T 3ial_A 51 RPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSM 130 (518)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHH
Confidence 4556888999999999999999999999999987432 11 12456554210 0145788876555432 33
Q ss_pred Hhc------CC-CceEEEecccccCCC-CCC-CCCCccceeeeeecCCCHHHHHHHHHHHHHHH
Q 012612 212 YAT------AL-SNVYTFGPTFRAENS-NTS-RHLAEFWMIEPELAFADLKDDMACATAYLQYV 266 (460)
Q Consensus 212 ~~~------g~-~rvfeI~~~FR~E~~-~~~-rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l 266 (460)
... .+ -|+||+++|||+|-. ... --.-||+|.|.+....+.+++.+.++.++...
T Consensus 131 ~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~ 194 (518)
T 3ial_A 131 FSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVI 194 (518)
T ss_dssp HHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHH
Confidence 222 22 379999999999943 111 01259999999997689888888888776443
|
| >4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00012 Score=76.80 Aligned_cols=120 Identities=18% Similarity=0.134 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-C---CCC-----Cceeeecccc--CCccccccccHHHHH-HHH
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E---GAG-----EQFCVTTLDF--FEKPAFLTVSGQLNA-ETY 212 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e---g~~-----~~F~v~~~~~--~~~~~~L~~Spql~l-~l~ 212 (460)
-.-.+++..|.+.+++.+.+.||.||.||+|.+... + |.. +.|.++...- .+.+++|+...+... .+.
T Consensus 58 P~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~ 137 (519)
T 4hvc_A 58 PWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAY 137 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHH
Confidence 346788899999999999999999999999977432 1 222 2343431100 023578865544322 222
Q ss_pred hc------CC-CceEEEecccccCCCCC-C--CCCCccceeeeeecCCCHHHHHHHHHHHHHH
Q 012612 213 AT------AL-SNVYTFGPTFRAENSNT-S--RHLAEFWMIEPELAFADLKDDMACATAYLQY 265 (460)
Q Consensus 213 ~~------g~-~rvfeI~~~FR~E~~~~-~--rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~ 265 (460)
.. .+ -|+|++++|||+|-..+ . | .-||+|.|.+..|.+.++..+.++.++..
T Consensus 138 ~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R-~ReF~q~e~h~~~~~~e~a~~E~~~~l~~ 199 (519)
T 4hvc_A 138 AKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLR-TREFLWQEGHSAFATMEEAAEEVLQILDL 199 (519)
T ss_dssp HHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTB-CSEEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred HhhccccccCCeEEEEEcCeeeCCCCCCCCCcc-eeEEEEeeEEEEecCHHHHHHHHHHHHHH
Confidence 22 22 37999999999994321 1 2 24999999999999988888777776643
|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=5.8e-05 Score=81.47 Aligned_cols=117 Identities=14% Similarity=0.140 Sum_probs=79.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-C--C-----CCCceeeeccccCCccccccccHHHHH-HHHh
Q 012612 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLDFFEKPAFLTVSGQLNA-ETYA 213 (460)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g-----~~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~ 213 (460)
..-.-.+++..|.+.+|+.+.+.||.||.||+|.+... + | ..+.|.+ +--+..++|+....... .+..
T Consensus 266 ~lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~~---d~~~~~~~LrP~~~~~~~~~~~ 342 (642)
T 1qf6_A 266 WHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTT---SSENREYCIKPMNCPGHVQIFN 342 (642)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEE---EETTEEEEECSSSHHHHHHHHT
T ss_pred ECCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCccccccccceee---ecCCceEEecCCCCHHHHHHHH
Confidence 34567889999999999999999999999999998542 0 1 1234542 23356778886554433 3333
Q ss_pred cC------C-CceEEEecccccCCCCCCCC----CCccceeeeeecCCCHHHHHHHHHHHHH
Q 012612 214 TA------L-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQ 264 (460)
Q Consensus 214 ~g------~-~rvfeI~~~FR~E~~~~~rH----l~EFt~lE~e~~~~~~~~~~~~~e~li~ 264 (460)
.. + -|+|++|+|||+|.+ +.+| .-||||.|++. |.+.+++.+..++++.
T Consensus 343 ~~~~syr~LPlr~~~~g~~fR~E~~-g~~~GL~R~ReF~q~d~~~-f~~~~~~~~e~~~~i~ 402 (642)
T 1qf6_A 343 QGLKSYRDLPLRMAEFGSCHRNEPS-GSLHGLMRVRGFTQDDAHI-FCTEEQIRDEVNGCIR 402 (642)
T ss_dssp TSCEEGGGCSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHH
T ss_pred hhhhhccccCeEEEEeccEEecCCC-ccccCCceeeeEEEccEEE-EcCHHHHHHHHHHHHH
Confidence 22 2 389999999999976 2222 35999999998 6665555444444443
|
| >1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00031 Score=73.13 Aligned_cols=121 Identities=15% Similarity=0.100 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-C--C-----CC-CceeeeccccCCccccccccHHHHH-HHHh
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AG-EQFCVTTLDFFEKPAFLTVSGQLNA-ETYA 213 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g-----~~-~~F~v~~~~~~~~~~~L~~Spql~l-~l~~ 213 (460)
.....+++..|++.+++.+.+.||.||.||.|.+... + | .. +.|.++. --+.++||.-..+... .+..
T Consensus 215 ~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~--~~~~~l~L~PTaE~~~~~l~~ 292 (501)
T 1wle_A 215 RGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDP--SRFEDLNLAGTAEVGLAGYFM 292 (501)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCT--TTSSSCEECSSHHHHHHHHHT
T ss_pred cChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEec--CCCCeEEECCcCcHHHHHHHh
Confidence 4556888999999999999999999999999998432 1 1 12 5565531 1145789998777755 3322
Q ss_pred cC------C-CceEEEecccccCCC-----CCCCCCCccceeeeeecCCCH-HHHHHHHHHHHHHH
Q 012612 214 TA------L-SNVYTFGPTFRAENS-----NTSRHLAEFWMIEPELAFADL-KDDMACATAYLQYV 266 (460)
Q Consensus 214 ~g------~-~rvfeI~~~FR~E~~-----~~~rHl~EFt~lE~e~~~~~~-~~~~~~~e~li~~l 266 (460)
.- + =|+|++++|||+|-. ++--=.-||+|.|++.--.+. ++..+..++++...
T Consensus 293 ~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~ 358 (501)
T 1wle_A 293 DHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQ 358 (501)
T ss_dssp TEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred hccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHH
Confidence 21 2 379999999999954 111112499999999744443 78888888877553
|
| >4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00025 Score=73.39 Aligned_cols=102 Identities=16% Similarity=0.179 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCC------CCCCCCceeeeccccCCccccccc--cHHHHHHHHhc-C
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGAGEQFCVTTLDFFEKPAFLTV--SGQLNAETYAT-A 215 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg~~~~F~v~~~~~~~~~~~L~~--Spql~l~l~~~-g 215 (460)
-.-.+++..|.+.+|+.|...||.||.||++.... ++...+.|... +--|+.+.|+. .+++- ++++. .
T Consensus 25 P~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~--D~~g~~l~LRPd~T~~~a-R~~~~~~ 101 (464)
T 4g84_A 25 PRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLK--DQGGELLSLRYDLTVPFA-RYLAMNK 101 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCCBBC--CCSSCCEEECSCSHHHHH-HHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeEEEE--CCCCCEEEeCCcCcHHHH-HHHHhcC
Confidence 44578889999999999999999999999996531 22222344332 33466666763 22222 32222 2
Q ss_pred --CCceEEEecccccCCCCCC-CCCCccceeeeeecC
Q 012612 216 --LSNVYTFGPTFRAENSNTS-RHLAEFWMIEPELAF 249 (460)
Q Consensus 216 --~~rvfeI~~~FR~E~~~~~-rHl~EFt~lE~e~~~ 249 (460)
--|.|+|+++||.|..... -+.-||+|+++|.-.
T Consensus 102 ~~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G 138 (464)
T 4g84_A 102 LTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG 138 (464)
T ss_dssp CSCEEEEEEEEEECCCC------CCSEEEEEEEEEES
T ss_pred CCCceeEEEecceeccCCccccCccceeeecceeccC
Confidence 2378999999999965322 245699999999864
|
| >3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A | Back alignment and structure |
|---|
Probab=97.61 E-value=5.5e-05 Score=78.67 Aligned_cols=113 Identities=19% Similarity=0.227 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC---CCC-----CCceeeeccccCCccccccccHHH-----HHH-H
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGA-----GEQFCVTTLDFFEKPAFLTVSGQL-----NAE-T 211 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg~-----~~~F~v~~~~~~~~~~~L~~Spql-----~l~-l 211 (460)
.-.+++..|.+.+|+.|.+.||.||.||+|..... .|. .+.|.+ +--+..++|+.-.+. +.+ +
T Consensus 47 ~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~---d~~~~~l~LRP~~t~~i~~~~~~~~ 123 (471)
T 3a32_A 47 GGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLF---DIEGHEFAVKPMNCPYHILLFLNEV 123 (471)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEE---EETTEEEEECSCSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEE---ecCCcEEEEccccHHHHHHHHHhhh
Confidence 35778899999999999999999999999988432 222 234544 233667888754432 222 2
Q ss_pred Hhc----CC-CceEEEecccccCCCC--CC--CCCCccceeeeeecCCCHHHHHHHHHHHH
Q 012612 212 YAT----AL-SNVYTFGPTFRAENSN--TS--RHLAEFWMIEPELAFADLKDDMACATAYL 263 (460)
Q Consensus 212 ~~~----g~-~rvfeI~~~FR~E~~~--~~--rHl~EFt~lE~e~~~~~~~~~~~~~e~li 263 (460)
... .+ -|+|++++|||+|... .. | .-||+|.|+|.- .+.++..+...+++
T Consensus 124 ~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R-~REF~Q~~~e~f-~~~~~~~de~~e~i 182 (471)
T 3a32_A 124 AKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLR-VRGFTQDDAHII-VPGGRVIDVVYDVF 182 (471)
T ss_dssp HHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTB-CSEEEEEEEEEE-EEGGGHHHHHHHHH
T ss_pred hhccccccCCeEEeeccceeccCCCccccccee-EEEEEECCeEEE-cChHHHHHHHHHHH
Confidence 221 33 4899999999999662 11 2 359999999984 44333333333333
|
| >3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00011 Score=77.28 Aligned_cols=117 Identities=18% Similarity=0.303 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-C--C-----CCCceeeeccccCCccccccccHHHHHHHHhcC
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLDFFEKPAFLTVSGQLNAETYATA 215 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g-----~~~~F~v~~~~~~~~~~~L~~Spql~l~l~~~g 215 (460)
...-.+++..+++.+++.+.+.||.||.||.|.+... + | ..+.|.++ +.++||.-..+...=.+...
T Consensus 271 ~p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~-----~~~~~L~PT~E~~~~~l~~~ 345 (536)
T 3err_A 271 KGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA-----ETDLYLTGTAEVVLNALHSG 345 (536)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEET-----TTTEEECSSTHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEec-----CCCEEEccCCcHHHHHHHhc
Confidence 3557899999999999999999999999999987432 1 1 12355542 35788887776654322222
Q ss_pred -------C-CceEEEecccccCCCCCC------CCCCccceeeeeecCCC--HHHHHHHHHHHHHHH
Q 012612 216 -------L-SNVYTFGPTFRAENSNTS------RHLAEFWMIEPELAFAD--LKDDMACATAYLQYV 266 (460)
Q Consensus 216 -------~-~rvfeI~~~FR~E~~~~~------rHl~EFt~lE~e~~~~~--~~~~~~~~e~li~~l 266 (460)
+ =|+|++++|||+|..... --.-||+|.|.+. |.. .++..+..++++...
T Consensus 346 ~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~-f~~pe~e~s~~~~e~~~~~~ 411 (536)
T 3err_A 346 EILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYV-LTEASLEASDRAFQELLENA 411 (536)
T ss_dssp CEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEE-EECSCHHHHHHHHHHHHHHH
T ss_pred ccccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEE-EECCchHHHHHHHHHHHHHH
Confidence 2 369999999999963111 1245999999985 554 347777777766553
|
| >3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00016 Score=75.29 Aligned_cols=119 Identities=15% Similarity=0.176 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-------CC-CCCceeeeccc------cCCccccccccHHHHHH
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-------EG-AGEQFCVTTLD------FFEKPAFLTVSGQLNAE 210 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-------eg-~~~~F~v~~~~------~~~~~~~L~~Spql~l~ 210 (460)
....+++..+++.+++.+.+.||.||.||.|.+... +. ..+.|.++... --+.++||....+...-
T Consensus 198 p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~ 277 (522)
T 3vbb_A 198 GVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIA 277 (522)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHH
Confidence 457889999999999999999999999999987432 11 22456553210 01356889877766542
Q ss_pred -HHhcC------C-CceEEEecccccCCCCC-------CCCCCccceeeeeecCCCHH--HHHHHHHHHHHH
Q 012612 211 -TYATA------L-SNVYTFGPTFRAENSNT-------SRHLAEFWMIEPELAFADLK--DDMACATAYLQY 265 (460)
Q Consensus 211 -l~~~g------~-~rvfeI~~~FR~E~~~~-------~rHl~EFt~lE~e~~~~~~~--~~~~~~e~li~~ 265 (460)
+...- + =|+|++++|||+|-+.. -| .-||+|.|.+. |..-+ +..+..++++..
T Consensus 278 ~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~R-vhQF~kvE~~~-f~~pe~e~s~~e~e~ml~~ 347 (522)
T 3vbb_A 278 ALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFR-VHQFEKIEQFV-YSSPHDNKSWEMFEEMITT 347 (522)
T ss_dssp TTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSS-CSEEEEEEEEE-EECSSTTHHHHHHHHHHHH
T ss_pred HHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcce-eeeeEEEEEEE-EeCCChHHHHHHHHHHHHH
Confidence 22111 1 26899999999996411 12 24999999985 54433 366666666544
|
| >4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00035 Score=73.45 Aligned_cols=103 Identities=16% Similarity=0.145 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecC------CCCCCCCceeeeccccCCccccccc--cHHHHHHHHhcC
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITAS------DCEGAGEQFCVTTLDFFEKPAFLTV--SGQLNAETYATA 215 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~------~~eg~~~~F~v~~~~~~~~~~~L~~--Spql~l~l~~~g 215 (460)
+-.-.++|..|.+.+|+.|...||.||.||++... .++.....|... +--|+.+.|+. .+.+- ++++..
T Consensus 77 lP~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~--D~~g~~l~LRPd~T~~~a-R~~~~~ 153 (517)
T 4g85_A 77 SPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLK--DQGGELLSLRYDLTVPFA-RYLAMN 153 (517)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCBBC--CTTSCCEEECSCSHHHHH-HHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEEEE--CCCCCEEEeCCcCcHHHH-HHHHhC
Confidence 44567889999999999999999999999999653 122222344332 33456666663 22221 333221
Q ss_pred ---CCceEEEecccccCCCCC-CCCCCccceeeeeecC
Q 012612 216 ---LSNVYTFGPTFRAENSNT-SRHLAEFWMIEPELAF 249 (460)
Q Consensus 216 ---~~rvfeI~~~FR~E~~~~-~rHl~EFt~lE~e~~~ 249 (460)
--|.|+||++||.|.... .=+.-||+|+++|.-.
T Consensus 154 ~~~p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G 191 (517)
T 4g85_A 154 KLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG 191 (517)
T ss_dssp TCSCEEEEEEEEEECCCC-------CCEEEEEEEEEES
T ss_pred CCCCceeEEEeceEeccCcccccCccceeeeeceeccC
Confidence 237899999999996522 1145799999999864
|
| >2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A | Back alignment and structure |
|---|
Probab=97.37 E-value=6.6e-05 Score=78.51 Aligned_cols=124 Identities=16% Similarity=0.180 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHHH-hhhhCCceeecCceeecCCC---CCC-----CCceeeeccc----------------------
Q 012612 145 GAVARVRNALAYATHK-FFQENGFIWISSPIITASDC---EGA-----GEQFCVTTLD---------------------- 193 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~-ff~~~gF~EV~TPiL~~~~~---eg~-----~~~F~v~~~~---------------------- 193 (460)
-.-.+++..|.+.+++ ++.+.||.||.||+|.+... -|. .+.|.++...
T Consensus 228 P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~ 307 (522)
T 2cja_A 228 PQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPT 307 (522)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCH
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhccccccc
Confidence 4567788899999996 68999999999999987422 011 1344442100
Q ss_pred ------cCCccccccccHHHHH-HHHh----c--CCC-ceEE-EecccccCCCCCC---CCCCccceeeeeecCCCHHHH
Q 012612 194 ------FFEKPAFLTVSGQLNA-ETYA----T--ALS-NVYT-FGPTFRAENSNTS---RHLAEFWMIEPELAFADLKDD 255 (460)
Q Consensus 194 ------~~~~~~~L~~Spql~l-~l~~----~--g~~-rvfe-I~~~FR~E~~~~~---rHl~EFt~lE~e~~~~~~~~~ 255 (460)
--+.++||+...+... .+.. . .+. |+|+ +++|||+| +.+. --.-||+|.|++. |.+.++.
T Consensus 308 ~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~E-pgs~~GL~R~REF~q~E~~~-F~~pe~s 385 (522)
T 2cja_A 308 KLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYE-SGGIHGIERVDEFHRIEIVW-IGTKEEV 385 (522)
T ss_dssp HHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCC-SSSCCCTTSCSEEEEEEEEE-EEEHHHH
T ss_pred cccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCC-CCCCCCCeEeEEEEEeeEEE-EeChHHH
Confidence 0135677775443321 1111 1 122 7999 99999999 4311 1235999999998 7888888
Q ss_pred HHHHHHHHHHHHHHH
Q 012612 256 MACATAYLQYVVRYI 270 (460)
Q Consensus 256 ~~~~e~li~~l~~~~ 270 (460)
.+..++++......+
T Consensus 386 ~ee~ee~i~~~~~~~ 400 (522)
T 2cja_A 386 LKCAEELHDRYMHIF 400 (522)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888884444444
|
| >1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0006 Score=71.41 Aligned_cols=34 Identities=12% Similarity=0.049 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhhh--hCCceeecCceeecCC
Q 012612 146 AVARVRNALAYATHKFFQ--ENGFIWISSPIITASD 179 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~--~~gF~EV~TPiL~~~~ 179 (460)
.-.+++..|.+.+|+.|. +.||.||.||+|.+..
T Consensus 37 ~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~ 72 (505)
T 1ati_A 37 LGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRL 72 (505)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETT
T ss_pred cHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHH
Confidence 457888999999999999 8999999999998753
|
| >1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0013 Score=63.41 Aligned_cols=89 Identities=10% Similarity=0.038 Sum_probs=58.8
Q ss_pred HHHHHH--HhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccc--cHHHHHHHHhc---CCCceEEEeccc
Q 012612 154 LAYATH--KFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTV--SGQLNAETYAT---ALSNVYTFGPTF 226 (460)
Q Consensus 154 i~~~iR--~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~--Spql~l~l~~~---g~~rvfeI~~~F 226 (460)
+.+.+| +.|.+.||.||.||++.....-.. +.| . +--|+.+.|+. .|.+...-+.. .--|.|++|+||
T Consensus 6 le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~-d~f-~---d~~g~~l~LRpd~T~~~a~~~~~~~~~~p~R~~y~g~vf 80 (275)
T 1usy_A 6 FEKVFSFYSKATKKGFSPFFVPALEKAEEPAG-NFF-L---DRKGNLFSIREDFTKTVLNHRKRYSPDSQIKVWYADFVY 80 (275)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEECSSCCS-SCE-E---ETTSCEEEECCCHHHHHHHHHTTCTTCCCEEEECCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEecCccccchhhhcc-ccc-C---CCCCCEEEeCCcChHHHHHHHhhcCCCCceEEEEeceEE
Confidence 344455 999999999999999987544211 334 2 33456666662 33333221221 224899999999
Q ss_pred ccCCCCCCCCCCccceeeeeecCCC
Q 012612 227 RAENSNTSRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 227 R~E~~~~~rHl~EFt~lE~e~~~~~ 251 (460)
|.|.+.. -||||+++|.-..+
T Consensus 81 R~e~~~~----Ref~Q~g~ei~g~~ 101 (275)
T 1usy_A 81 RYSGSDL----VAEYQLGLEKVPRN 101 (275)
T ss_dssp EEETTEE----EEEEEEEEEEESCC
T ss_pred ecCCCCC----CeeeEeCEEEecCC
Confidence 9998743 69999999986553
|
| >3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00045 Score=68.01 Aligned_cols=121 Identities=18% Similarity=0.133 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-CCCC-------Cceeeeccc----------------------c
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLD----------------------F 194 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~-------~~F~v~~~~----------------------~ 194 (460)
...-+++..+.+.+++ ..+.||.||.||.|.+... ++.+ ..|.+.... .
T Consensus 61 g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l 139 (346)
T 3mf2_A 61 ALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSL 139 (346)
T ss_dssp HHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGE
T ss_pred chHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhcccccccccc
Confidence 4567788899999999 8899999999999987433 2221 244442100 0
Q ss_pred CCccccccccHHHHH-HHHhc-C-C----CceEEEecccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHH
Q 012612 195 FEKPAFLTVSGQLNA-ETYAT-A-L----SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVV 267 (460)
Q Consensus 195 ~~~~~~L~~Spql~l-~l~~~-g-~----~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~ 267 (460)
-+.++||....+..+ .+... | + -|+-.+++|||.|.+.+--..-+|+|.|+-. |.+.+++.+..|+++..+-
T Consensus 140 ~~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~-~~tpEqs~~e~e~l~~~ae 218 (346)
T 3mf2_A 140 SPADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVC-IGTPDDVSDFRERWMVRAQ 218 (346)
T ss_dssp EEEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEE-EESHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEE-EeCHHHHHHHHHHHHHHHH
Confidence 023577877666654 33332 1 1 3567799999999875555567999999876 6789999999998887654
|
| >3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0019 Score=66.31 Aligned_cols=109 Identities=11% Similarity=-0.031 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHhh-hhCC-ceeecCceeecCCCCCCCCceeeeccccCCccccccc-cHHHHH----HHHhcC---
Q 012612 146 AVARVRNALAYATHKFF-QENG-FIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTV-SGQLNA----ETYATA--- 215 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff-~~~g-F~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~-Spql~l----~l~~~g--- 215 (460)
.=..+|+.|.+..|..+ .++| +.||+||+......-|.-+.| . +||+. +-|-+. ..+-..
T Consensus 102 ~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~~~~SGH~d~~--------~--~~LRPeTaqg~~~nfk~~~~s~r~~ 171 (459)
T 3ikl_A 102 LGVELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPGDSAF--------R--GGLRENLLHGALEHYVNCLDLVNKR 171 (459)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCSCEECCCCSBCCSCCCSSCSCC--------T--TB-CSCSHHHHHHHTTTTTGGGTTB
T ss_pred cHHHHHHHHHHHHHHHHhhccCceEeeccccccccccCcchhhh--------c--ceECCCCChhHHHHHhhhhhhcccc
Confidence 34678899998555444 5466 677999995443333333333 2 67775 333322 122211
Q ss_pred C-CceEEEecccccCC--CCCCCC----CCccceeeeeecCCCHHHHHHHHHHHHHHH
Q 012612 216 L-SNVYTFGPTFRAEN--SNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQYV 266 (460)
Q Consensus 216 ~-~rvfeI~~~FR~E~--~~~~rH----l~EFt~lE~e~~~~~~~~~~~~~e~li~~l 266 (460)
+ =++.|||+|||+|. + +.+| .-||||.|++. |.+-++..+..+.++...
T Consensus 172 LP~~iaqig~~FR~E~g~~-~~~~GL~RvrEFtq~E~~~-F~~Pe~~~e~~~~~~~~~ 227 (459)
T 3ikl_A 172 LPYGLAQIGVCFHPVFDTK-QIRNGVKSIGEKTEASLVW-FTPPRTSNQWLDFWLRHR 227 (459)
T ss_dssp SSEEEEEEEEEECCC-----------CCCCEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred CCeEEEEEeeeeecccccc-cCCCCcccccceeeeeEEE-EeChhHHHHHHHHHHHHH
Confidence 1 15899999999994 2 3333 25999999985 676666666555555443
|
| >2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0029 Score=68.57 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHhhh-hCCceeecCceeec
Q 012612 145 GAVARVRNALAYATHKFFQ-ENGFIWISSPIITA 177 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~-~~gF~EV~TPiL~~ 177 (460)
-.-.+++..|.+.+|+.|. ..||.||.||+|++
T Consensus 98 P~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~ 131 (693)
T 2zt5_A 98 PVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTP 131 (693)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEE
T ss_pred CChHHHHHHHHHHHHHHHHHhcCcEEEEeCCccc
Confidence 4457889999999999998 56999999999986
|
| >3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.023 Score=45.53 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=61.0
Q ss_pred eeeccccCCccCCCCCCCCEEEEEEEEeeec---c----CC---CeEEEEEEcCCCccceEEEEeCCccchhhHhccCCC
Q 012612 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR---A----QS---SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (460)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R---~----~g---~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~ 81 (460)
.+|+||.+ +..|.|.|+|.++- . .| ++.=+.|.|.|| .|.+++..+... . . ++
T Consensus 3 ~kI~dl~~---------g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG--~I~~tlW~~~~~---~-~--i~ 65 (97)
T 3e0e_A 3 YKISELMP---------NLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTG--SIRGTLWNELAD---F-E--VK 65 (97)
T ss_dssp ECGGGCCT---------TEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTE--EEEEEEEGGGGG---C-C--CC
T ss_pred eEHHHCCC---------CCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC--cEEEEEECCccc---c-c--cC
Confidence 46777743 36799999998873 1 22 355577899996 589887764321 1 4 99
Q ss_pred CCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCC
Q 012612 82 TGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSD 116 (460)
Q Consensus 82 ~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~ 116 (460)
+||+|.|.|.+..-. +.+||.+.+...+.+|+
T Consensus 66 ~Gdvv~i~g~v~~~~---~~~el~~g~~~~i~k~~ 97 (97)
T 3e0e_A 66 KGDIAEVSGYVKQGY---SGLEISVDNIGIIEKSL 97 (97)
T ss_dssp TTCEEEEEEEEEEC-----CEEEEEEEEEEEECCC
T ss_pred CCCEEEEEEEEEEcC---CeEEEEECCCcEEEECC
Confidence 999999999987653 36999999988887763
|
| >3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.019 Score=46.80 Aligned_cols=89 Identities=12% Similarity=0.201 Sum_probs=66.0
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeecc-------C---CCeEEEEEEcCCCccceEEEEeCCccchhhHhccC
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA-------Q---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGL 79 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~-------~---g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~ 79 (460)
..++|+||.. +..|.|.|+|.++-. . +++.=+.|.|.+| .|.+++..+.... .
T Consensus 4 ~~~~I~dL~~---------~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG--~IrvtlW~~~a~~----~-- 66 (105)
T 3dm3_A 4 DTYNIGELSP---------GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETG--SIRVTLWDNLTDI----D-- 66 (105)
T ss_dssp CEECGGGCCS---------SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTE--EEEEEEEGGGGGS----C--
T ss_pred cceEHHHCCC---------CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC--cEEEEEECccccc----c--
Confidence 4567778854 267999999988732 2 2344578899986 4999877653221 4
Q ss_pred CCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCC
Q 012612 80 ITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDP 117 (460)
Q Consensus 80 l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~ 117 (460)
+.+||+|.+.|.++.... +.+||++.....+.+|..
T Consensus 67 l~~Gdvv~i~g~vk~~~~--g~~eL~~g~~~~i~~~~~ 102 (105)
T 3dm3_A 67 VGRGDYVRVRGYIREGYY--GGLECTANYVEILKKGEK 102 (105)
T ss_dssp CCTTCEEEEEEEEEECTT--SSEEEEEEEEEEEECCC-
T ss_pred cCCCCEEEEEEEEEEccC--CCEEEEeCCceEEEeccc
Confidence 999999999999988653 379999999999999863
|
| >3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B | Back alignment and structure |
|---|
Probab=96.60 E-value=0.018 Score=48.83 Aligned_cols=97 Identities=13% Similarity=0.168 Sum_probs=63.9
Q ss_pred eeeccccCCc--cCCC---CCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccch-hhHhccCCCCCcE
Q 012612 12 LKIVDVKGGP--NEGL---DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITTGAS 85 (460)
Q Consensus 12 ~~i~~l~~~~--~~~~---~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~-~~~~~~~l~~g~~ 85 (460)
++|++|.+.. ++.- ...=..|++.|+|.++.....-.-+.|.|+|| ..|.+....+...- ..... +..|++
T Consensus 9 vtIkqil~a~~~~~~f~i~g~~i~~V~iVG~V~~~~~~~~~~~~~ldD~TG-~~I~~~~W~~~~~~~~~~~~--~~~g~y 85 (132)
T 3kdf_D 9 CTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTA-APMDVRQWVDTDDTSSENTV--VPPETY 85 (132)
T ss_dssp CCHHHHHTCEESSSCEEETTEECCEEEEEEEEEEEEECSSEEEEEEECSSS-SCEEEEEEC---------CC--CCTTCE
T ss_pred EEHHHHhhCccCCCcEEECCEEEEEEEEEEEEEEEEEcCCeEEEEEECCCC-CEEEEEEEccCCCccccccc--ccCCCE
Confidence 6677776643 1110 12235689999999999887666678999997 14999887653211 11334 999999
Q ss_pred EEEEeeEeecCCCCceEEEEEeEEEEEec
Q 012612 86 IWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (460)
Q Consensus 86 V~V~G~v~~~~~~~~~~El~~~~i~ils~ 114 (460)
|.|.|.++.-. +...|.+..+..+..
T Consensus 86 VrV~G~l~~f~---g~~qi~~~~ir~v~d 111 (132)
T 3kdf_D 86 VKVAGHLRSFQ---NKKSLVAFKIMPLED 111 (132)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECSS
T ss_pred EEEEEEEEeEC---CEEEEEEEEEEEcCC
Confidence 99999998753 357788877765543
|
| >3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.025 Score=49.60 Aligned_cols=81 Identities=15% Similarity=0.222 Sum_probs=62.0
Q ss_pred CCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccc-hhhH-hccCCCCCcEEEEEeeEeecCCCCceEEEE
Q 012612 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQV-KSGLITTGASIWIQGNVVPSQGSKQKVELK 105 (460)
Q Consensus 28 ~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~-~~~~-~~~~l~~g~~V~V~G~v~~~~~~~~~~El~ 105 (460)
+=+.|+|.|.|.+++...+...+.|-|+||. .|.|++..+... -... .. +..|++|.|.|.+..-. ++.+|.
T Consensus 46 PI~~V~IvGiVv~~~~~~~~~~ytIDD~TG~-~I~cv~w~~~~~~~~~~~~~--l~~G~~VrV~G~v~~fr---~~rqI~ 119 (159)
T 3kf6_A 46 PIRWIQIVGYIAAIDIYEGKHVLTVDDCSGM-VLRVVFIIQDDFSMSKRAIS--MSPGNVVCVFGKINSFR---SEVELI 119 (159)
T ss_dssp EECEEEEEEEEEEEEEETTEEEEEEECSSSC-EEEEEEEGGGCHHHHHHHTT--CCTTCEEEEEEEEECSS---SSCEEE
T ss_pred EEEEEEEEEEEEEEEEeCCEEEEEEecCCCC-eEEEEEEccCCCCccccccc--CCCCCEEEEEEEEEeeC---CEEEEE
Confidence 3467999999999998877788899999983 689988765421 1112 24 89999999999997643 257899
Q ss_pred EeEEEEEec
Q 012612 106 VNKIVLVGK 114 (460)
Q Consensus 106 ~~~i~ils~ 114 (460)
++++.++..
T Consensus 120 ~~~i~~v~d 128 (159)
T 3kf6_A 120 AQSFEELRD 128 (159)
T ss_dssp EEEEEEECS
T ss_pred EEEEEECCC
Confidence 999988774
|
| >4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.022 Score=48.59 Aligned_cols=97 Identities=11% Similarity=0.140 Sum_probs=64.8
Q ss_pred ceeeeccccCCcc----CCC---CCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccch--hhHhccCC
Q 012612 10 KKLKIVDVKGGPN----EGL---DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGLI 80 (460)
Q Consensus 10 ~~~~i~~l~~~~~----~~~---~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~--~~~~~~~l 80 (460)
+-++|++|.+... +.- ...=..|++.|+|.+++......-+.|.|+|| .|.+....+.... ..... +
T Consensus 10 ~PvtIkqil~a~~~~~~~~f~i~g~~i~~V~iVG~V~~~~~~~~~~~~~ldD~TG--~I~~~~W~~~~~~~~~~~~~--~ 85 (136)
T 4gop_B 10 RPVTIRQILNAEQPHPDAEFILDGAELGQLTFVAVVRNISRNATNVAYSVEDGTG--QIEVRQWLDSSSDDSSKASE--I 85 (136)
T ss_dssp EECCHHHHHHCBCCSSSCCCBSSSSBCCEEEEEEEEEEEEECSSEEEEEEECSSC--EEEEEEECC--------CCS--C
T ss_pred EeEEHHHHhhccccCCCCcEEECCEEEEEEEEEEEEEEEEecCCeEEEEEECCCC--CEEEEEecccCCcccccccc--c
Confidence 3467788766321 101 12235799999999999876666678999997 4999887643211 12344 9
Q ss_pred CCCcEEEEEeeEeecCCCCceEEEEEeEEEEEe
Q 012612 81 TTGASIWIQGNVVPSQGSKQKVELKVNKIVLVG 113 (460)
Q Consensus 81 ~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils 113 (460)
..|++|.|.|.+..-. +...|.+..+..+.
T Consensus 86 ~~g~yVrV~G~v~~f~---g~~qi~~~~ir~v~ 115 (136)
T 4gop_B 86 RNNVYVRVLGTLKSFQ---NRRSISSGHMRPVI 115 (136)
T ss_dssp CTTCEEEEEEEEEEET---TEEEEEESEEEECS
T ss_pred CCCCEEEEEEEEEEeC---CEEEEEEEEEEECC
Confidence 9999999999997643 35778877776543
|
| >1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0049 Score=63.58 Aligned_cols=119 Identities=12% Similarity=0.032 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHh-h-hhCCceeecCceeecCCC-CCC-------CCceeee------------c--cccCCccccc
Q 012612 146 AVARVRNALAYATHKF-F-QENGFIWISSPIITASDC-EGA-------GEQFCVT------------T--LDFFEKPAFL 201 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~f-f-~~~gF~EV~TPiL~~~~~-eg~-------~~~F~v~------------~--~~~~~~~~~L 201 (460)
.=.+++..|.+.+++. + .+.|+.||.||+|.+..- .+. ++.+.-. . .+.++.++||
T Consensus 60 ~G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~L 139 (454)
T 1g5h_A 60 LGVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKL 139 (454)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEE
T ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceee
Confidence 3578889999988876 4 589999999999988542 221 1111100 0 0123456778
Q ss_pred cc--cHHHH---HHHHhc---CC-CceEEEecccc---cCCCCCCCC----CCccceeeeeecCCCHHHHHHHHHHHHHH
Q 012612 202 TV--SGQLN---AETYAT---AL-SNVYTFGPTFR---AENSNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQY 265 (460)
Q Consensus 202 ~~--Spql~---l~l~~~---g~-~rvfeI~~~FR---~E~~~~~rH----l~EFt~lE~e~~~~~~~~~~~~~e~li~~ 265 (460)
+. +|-.+ +..+.. -+ =+++|||+||| ||-+ + +| .-||||.|++. |.+.++..+..+.++..
T Consensus 140 RPeta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s-~-~~Gl~R~REF~q~E~~~-F~~pe~~~e~~~~~~~~ 216 (454)
T 1g5h_A 140 RATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQ-T-PSSVTRVGEKTEASLVW-FTPTRTSSQWLDFWLRH 216 (454)
T ss_dssp CSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC-----------CEEEEEEEEEEEE-EECHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCccccc-C-CCCccccCceehhheEE-EeCHhhHHHHHHHHHHH
Confidence 74 33333 333322 23 26999999999 6854 2 44 45999999995 77888777666666554
Q ss_pred HH
Q 012612 266 VV 267 (460)
Q Consensus 266 l~ 267 (460)
..
T Consensus 217 ~~ 218 (454)
T 1g5h_A 217 RL 218 (454)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.03 Score=46.12 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=57.8
Q ss_pred CCCEEEEEEEEeee---c----cC---CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCC
Q 012612 28 VGLMIVVAGWVRTL---R----AQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG 97 (460)
Q Consensus 28 ~~~~V~v~GwV~~~---R----~~---g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~ 97 (460)
.|+.+.+.|.|.++ | +. +.+..+.|.|.+| .|.+.+..+... .... +.+|++|.|+|.+....
T Consensus 15 ~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG--~I~~t~w~~~~~--~~~~--l~~G~vv~i~g~~v~~~- 87 (115)
T 2k50_A 15 EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTG--ELRAVFWTENIK--LLKK--FREGDVIRIKDVNIRGG- 87 (115)
T ss_dssp TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTE--EEEEEEETTGGG--GGGT--CCTTSEEEEEEEEECCC-
T ss_pred CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCC--eEEEEEeCchhh--hhhc--CCCCCEEEEEeeEEccc-
Confidence 46778999999988 2 12 4688899999996 599988865421 2345 99999999999986531
Q ss_pred CCceEEEEEeEEEEEecC
Q 012612 98 SKQKVELKVNKIVLVGKS 115 (460)
Q Consensus 98 ~~~~~El~~~~i~ils~~ 115 (460)
-.+.++|.+.+...+.++
T Consensus 88 f~g~~qL~~~~~~~i~~~ 105 (115)
T 2k50_A 88 FGGRKEAHLMPRSTVEVL 105 (115)
T ss_dssp SSSSCEEEECTTCCEEEE
T ss_pred cCCeEEEEECCCceEEEC
Confidence 123588877665555554
|
| >3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.029 Score=59.65 Aligned_cols=112 Identities=8% Similarity=-0.016 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhhhhCCceeecCceeecCC--C------CCCCCceeeeccccCCc-cccccccHHHHH-HHHhcCC----
Q 012612 151 RNALAYATHKFFQENGFIWISSPIITASD--C------EGAGEQFCVTTLDFFEK-PAFLTVSGQLNA-ETYATAL---- 216 (460)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~--~------eg~~~~F~v~~~~~~~~-~~~L~~Spql~l-~l~~~g~---- 216 (460)
.+++...+|+.|...||.|+.|+.+++.. . ....+.+.+. |-... -..||+|-=--+ +.+....
T Consensus 393 ~~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~--NPis~e~svmRtsLlpgLL~~l~~N~~~~~ 470 (589)
T 3l4g_B 393 LNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHIS--NPKTAEFQVARTTLLPGLLKTIAANRKMPL 470 (589)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBS--SCSSGGGSEECSCSHHHHHHHHHHTTTSCS
T ss_pred HHHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEc--CCCchhHhHHHHHHHHHHHHHHHHHhcCCC
Confidence 34568889999999999999999998742 1 1112334432 22222 246777654433 5443221
Q ss_pred -CceEEEecccccCCCCCCCCCCccceeeeeecCC--CHHHHHHHHHHHHHH
Q 012612 217 -SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQY 265 (460)
Q Consensus 217 -~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~--~~~~~~~~~e~li~~ 265 (460)
-|+||+|+|||.++. ..+|.+|+.|+..-+... ++.++...++.++..
T Consensus 471 ~vrlFEiG~Vf~~d~~-~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~ 521 (589)
T 3l4g_B 471 PLKLFEISDIVIKDSN-TDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQL 521 (589)
T ss_dssp CEEEEEEEEEEEECTT-STTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHH
T ss_pred ceEEEEeeeEEecCCc-cccCCccccEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 269999999997654 457889999999766543 577777777766554
|
| >2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.05 Score=59.90 Aligned_cols=113 Identities=12% Similarity=0.016 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhhhhCCceeecCceeecCCC-C---CCCC-ceeeeccccCC-ccccccccHHHHH-HHHh----cCCC-
Q 012612 150 VRNALAYATHKFFQENGFIWISSPIITASDC-E---GAGE-QFCVTTLDFFE-KPAFLTVSGQLNA-ETYA----TALS- 217 (460)
Q Consensus 150 ~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e---g~~~-~F~v~~~~~~~-~~~~L~~Spql~l-~l~~----~g~~- 217 (460)
-..++.+.+|+.|...||.|+.|..+++... + +..+ .+.+. |-.. .-..||+|-=--+ +.+. .+..
T Consensus 494 ~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~~v~L~--NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~ 571 (795)
T 2rhq_B 494 DRQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISLL--MPMSEAHATLRQSLLPHLIEATAYNVARKNKD 571 (795)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTCSSCCCCEECS--SCSCTTSSEECSCSHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHCCCEEEecCCccCHHHHHhhCCCCCceEEEc--CCCchhhhhhhhccHHHHHHHHHHHhcCCCCC
Confidence 3456788899999999999999999987532 1 1123 24442 2222 2235776654432 4332 3333
Q ss_pred -ceEEEecccccCCCCCCCCCCccceeeeeecC-------------CCHHHHHHHHHHHHHHH
Q 012612 218 -NVYTFGPTFRAENSNTSRHLAEFWMIEPELAF-------------ADLKDDMACATAYLQYV 266 (460)
Q Consensus 218 -rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~-------------~~~~~~~~~~e~li~~l 266 (460)
|+||+|+|||.++. ...| +||+|+..-++. .|+.++...+|.++..+
T Consensus 572 vrlFEiG~Vf~~d~~-~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~l 632 (795)
T 2rhq_B 572 VRLYEIGRVFFGNGE-GELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKL 632 (795)
T ss_dssp EEEEEEEEEEECCCT-TSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHH
T ss_pred eEEEEEeeEEecCCc-ccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 79999999996543 2256 899999965543 58999999999998876
|
| >1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.033 Score=45.61 Aligned_cols=84 Identities=18% Similarity=0.206 Sum_probs=59.2
Q ss_pred eeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEee
Q 012612 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (460)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~ 91 (460)
++++++.+- ..+..|++.|.|.+.-..-+ ...+|++| .|+|-++.+. |.- .. +++++-|.+.|.
T Consensus 26 ~TV~~a~~~------~Dd~~V~L~G~Iv~~~~~d~---Y~F~D~TG--~I~VeId~~~--w~g-~~--v~p~~~Vri~Ge 89 (109)
T 1nnx_A 26 TTVESAKSL------RDDTWVTLRGNIVERISDDL---YVFKDASG--TINVDIDHKR--WNG-VT--VTPKDTVEIQGE 89 (109)
T ss_dssp CCHHHHTTS------CSSEEEEEEEEEEEEEETTE---EEEEETTE--EEEEECCGGG--STT-CC--CCTTSCEEEEEE
T ss_pred EeHHHHhhC------cCCCeEEEEEEEEEEeCCCe---EEEECCCc--cEEEEEChhh--cCC-cc--cCCCCEEEEEEE
Confidence 567777653 56788999999976654433 35799996 4887765432 211 23 999999999999
Q ss_pred EeecCCCCceEEEEEeEEEEEec
Q 012612 92 VVPSQGSKQKVELKVNKIVLVGK 114 (460)
Q Consensus 92 v~~~~~~~~~~El~~~~i~ils~ 114 (460)
|.+.-. ..||.|..|++|.+
T Consensus 90 vDkd~~---~~eIdV~~i~~~~~ 109 (109)
T 1nnx_A 90 VDKDWN---SVEIDVKQIRKVNP 109 (109)
T ss_dssp EEEETT---EEEEEEEEEEEC--
T ss_pred ECCCCC---ceEEEEEEEEEccC
Confidence 997532 47999999988753
|
| >3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.033 Score=51.28 Aligned_cols=113 Identities=12% Similarity=0.124 Sum_probs=67.6
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecCCC-CCC-----CCceeeeccccC-CccccccccHHHHH-HHHhc----CCC--
Q 012612 152 NALAYATHKFFQENGFIWISSPIITASDC-EGA-----GEQFCVTTLDFF-EKPAFLTVSGQLNA-ETYAT----ALS-- 217 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~-----~~~F~v~~~~~~-~~~~~L~~Spql~l-~l~~~----g~~-- 217 (460)
.++...+|+.|...||.||-|-.+++... +.. .+...+. |-. ..-..||+|-=--+ +.+.. +..
T Consensus 7 ~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~~~~~v~l~--NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~v 84 (213)
T 3ig2_A 7 NKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNLVMLL--NPLSADLNCMRQTLLFGGLESIAHNANRKNADL 84 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSCGGGCEEBS--SGGGCSCCEECSCSHHHHHHHHHHC------CC
T ss_pred HHHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccCcCCeEEEe--CCcchhHHHHHHHhHHHHHHHHHHHhcCCCCCe
Confidence 46778899999999999999999987432 111 1222221 222 22346777754443 54433 333
Q ss_pred ceEEEecccccCCCCCC-----CCCCccceeeeeecC-------------CCHHHHHHHHHHHHHHH
Q 012612 218 NVYTFGPTFRAENSNTS-----RHLAEFWMIEPELAF-------------ADLKDDMACATAYLQYV 266 (460)
Q Consensus 218 rvfeI~~~FR~E~~~~~-----rHl~EFt~lE~e~~~-------------~~~~~~~~~~e~li~~l 266 (460)
|+||||+||+.++.+.. .+..|..+|-.-++. .|+.++...+|.++..+
T Consensus 85 ~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~l 151 (213)
T 3ig2_A 85 KFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRL 151 (213)
T ss_dssp EEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHT
T ss_pred eEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 79999999997653211 233577788765544 25667777777766554
|
| >3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.17 Score=50.82 Aligned_cols=77 Identities=13% Similarity=0.257 Sum_probs=60.9
Q ss_pred CCCEEEEEEEEeee-cc-CCCeEEEEEEcCCCccceEEEEeCCccchhh-HhccCCCCCcEEEEEeeEeecCCCCceEEE
Q 012612 28 VGLMIVVAGWVRTL-RA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVEL 104 (460)
Q Consensus 28 ~~~~V~v~GwV~~~-R~-~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~-~~~~~l~~g~~V~V~G~v~~~~~~~~~~El 104 (460)
....++|.|.|.+. +. .|+-+|+.|.|++ ..|.|++=.....|.. ++. |.+||.|.|.|.++. + .|
T Consensus 283 ~~~~~~v~G~V~~~P~~~~GGHV~f~l~d~~--~~i~c~ayeptk~fr~~vr~--L~~GD~V~v~G~v~~-----g--tL 351 (402)
T 3au7_A 283 NYRSYRLRGRVTLEPYDIEGGHVFFEIDTKF--GSVKCAAFEPTKQFRNVIRL--LRKGDVVEVYGSMKK-----D--TI 351 (402)
T ss_dssp TTCEEEEEEEEEEEEEEETTTEEEEEEEETT--EEEEEEECGGGTTHHHHHTT--CCTTCEEEEEEEEET-----T--EE
T ss_pred cCceEEEEEEEecCcEeccCceEEEEEEcCC--CEEEEEEEccchHHHHHHhc--CCCCCEEEEEEeecC-----C--EE
Confidence 45789999999988 55 4888999999986 4599987553333544 566 999999999999865 2 88
Q ss_pred EEeEEEEEecC
Q 012612 105 KVNKIVLVGKS 115 (460)
Q Consensus 105 ~~~~i~ils~~ 115 (460)
.++++++++-+
T Consensus 352 nvEk~~v~~l~ 362 (402)
T 3au7_A 352 NLEKIQIVELA 362 (402)
T ss_dssp EEEEEEEEECC
T ss_pred EEEEEEEcccC
Confidence 99999998775
|
| >2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A | Back alignment and structure |
|---|
Probab=94.95 E-value=0.16 Score=48.49 Aligned_cols=99 Identities=13% Similarity=0.142 Sum_probs=65.9
Q ss_pred ceeeeccccCCcc--CCCCCCC---CEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccch-hhHhccCCCCC
Q 012612 10 KKLKIVDVKGGPN--EGLDRVG---LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITTG 83 (460)
Q Consensus 10 ~~~~i~~l~~~~~--~~~~~~~---~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~-~~~~~~~l~~g 83 (460)
+-++|++|.+... +.-...+ ..|++.|+|.++...+...-+.|.|++| ..|.+.+..+...- ..... +..|
T Consensus 47 ~PvtIkqil~a~~~d~~f~i~g~~i~~V~ivG~V~~i~~~~~~~~~~L~D~TG-~~I~~k~W~~~~~~~~~~~~--~~~G 123 (270)
T 2pi2_A 47 VPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTA-APMDVRQWVDTDDTSSENTV--VPPE 123 (270)
T ss_dssp EECCHHHHHHCEEETTEEEETTEEESEEEEEEEEEEEEECSSEEEEEEECSSS-SCEEEEEECC-------CCC--CCTT
T ss_pred EEEEHHHHhcCccCCCcEEECCEEEEEEEEEEEEEEEEeccceEEEEEECCCC-CEEEEEEEcCcCcccchhhc--CCCC
Confidence 4478888887521 1011112 4699999999998776666678999997 14888887643210 11234 9999
Q ss_pred cEEEEEeeEeecCCCCceEEEEEeEEEEEec
Q 012612 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (460)
Q Consensus 84 ~~V~V~G~v~~~~~~~~~~El~~~~i~ils~ 114 (460)
++|.|.|.+..=. +...|.+..|..+..
T Consensus 124 ~yVrV~G~v~~f~---g~~qi~i~~ir~v~d 151 (270)
T 2pi2_A 124 TYVKVAGHLRSFQ---NKKSLVAFKIMPLED 151 (270)
T ss_dssp CEEEEEEEEEEET---TEEEEEEEEEEECSC
T ss_pred CEEEEEEEEEecC---CeeEEEEEEEEecCC
Confidence 9999999998653 257778777775554
|
| >2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A | Back alignment and structure |
|---|
Probab=94.40 E-value=0.32 Score=39.65 Aligned_cols=87 Identities=20% Similarity=0.195 Sum_probs=61.3
Q ss_pred eeccccCCccCCCCCCCCEEEEEEEEeeecc--C-CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEE
Q 012612 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA--Q-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (460)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~--~-g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~ 89 (460)
+|+||.. .++.|.+.|+|.++-. . +....+.|.|.||. |-+++..+. .+.. +..|++|.|+
T Consensus 7 kI~dl~~--------~~~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG~--I~~t~W~~~----~~~~--~~~G~~V~i~ 70 (109)
T 2kbn_A 7 KIVDIVE--------NGQWANLKAKVIQLWENTHESISQVGLLGDETGI--IKFTIWKNA----ELPL--LEQGESYLLR 70 (109)
T ss_dssp CTTTCCS--------TTCEEEEEEEEEEEEECCCSSEEEEEEEECTTCC--EEEEEEGGG----CCCC--CCTTCEEEEE
T ss_pred EHHHCCC--------CCCcEEEEEEEEEeEcCCCCeEEEEEEEECCCCe--EEEEEECcc----cccc--cCCCCEEEEE
Confidence 4666643 2567999999998853 2 23445788999974 888887632 1234 9999999999
Q ss_pred -eeEeecCCCCceEEEEEeEEEEEecCCCC
Q 012612 90 -GNVVPSQGSKQKVELKVNKIVLVGKSDPS 118 (460)
Q Consensus 90 -G~v~~~~~~~~~~El~~~~i~ils~~~~~ 118 (460)
|.+..-+ +.++|.+.+...+.+....
T Consensus 71 n~~v~~~~---G~~~L~v~~~~~I~~~~~~ 97 (109)
T 2kbn_A 71 SVVVGEYN---DRFQVQVNKNSSIEKLSEP 97 (109)
T ss_dssp EEEEEEET---TEEEEEECSSSEEEECSSC
T ss_pred EEEEEEEC---CEEEEEECCceEEEECCCc
Confidence 6776643 3699999887777665543
|
| >3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.11 Score=47.61 Aligned_cols=113 Identities=14% Similarity=0.063 Sum_probs=71.8
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecCCC-CCC-----CCceeeeccccCCc-cccccccHHHHH-HHH----hcCCC--
Q 012612 152 NALAYATHKFFQENGFIWISSPIITASDC-EGA-----GEQFCVTTLDFFEK-PAFLTVSGQLNA-ETY----ATALS-- 217 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~-----~~~F~v~~~~~~~~-~~~L~~Spql~l-~l~----~~g~~-- 217 (460)
.++.+.+|+.|...||.||-|-.+++... +.. .+...+. |-... -..||+|-=--+ +.+ ..+..
T Consensus 7 ~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~~~~v~l~--NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~~ 84 (213)
T 3ica_A 7 YKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVELM--NPLSQELNCMRQTLLFGGLETLSHNLRRKHLSL 84 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCGGGCCBCS--SBSCSSEEEECSSSHHHHHHHHHHHHTTTCSEE
T ss_pred HHHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccCcCCeEEec--CCccHHHHHHHHHhHHHHHHHHHHHHcCCCCCe
Confidence 46778899999999999999999987432 111 1112221 22222 346777754433 433 34554
Q ss_pred ceEEEecccccCCCCC-----CCCCCccceeeeeecC-------------CCHHHHHHHHHHHHHHH
Q 012612 218 NVYTFGPTFRAENSNT-----SRHLAEFWMIEPELAF-------------ADLKDDMACATAYLQYV 266 (460)
Q Consensus 218 rvfeI~~~FR~E~~~~-----~rHl~EFt~lE~e~~~-------------~~~~~~~~~~e~li~~l 266 (460)
|+||||+||+.++... ..+..|..++-.-++. .|+.++...+|.++..+
T Consensus 85 ~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~l 151 (213)
T 3ica_A 85 YLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRV 151 (213)
T ss_dssp EEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHT
T ss_pred eEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 7999999999754210 1234577788765543 47888888888877664
|
| >2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.54 Score=38.07 Aligned_cols=88 Identities=15% Similarity=0.205 Sum_probs=61.4
Q ss_pred eeeccccCCccCCCCCCCCEEEEEEEEeeec-----cCCC---eEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCC
Q 012612 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR-----AQSS---VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (460)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R-----~~g~---~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g 83 (460)
.+|+||... ...|.+.|.|.++- +.|+ +.=+.|.|.|| .|.+.+..+ . +.+|
T Consensus 4 ~kI~dl~pg--------~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG--~I~~tlW~~--------~--l~~G 63 (106)
T 2k75_A 4 VKIRDVSLS--------TPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTA--RIRISSFGK--------Q--LQDS 63 (106)
T ss_dssp CCSTTCCTT--------CSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSC--EEEEEEESS--------C--CCTT
T ss_pred EEHHHcCCC--------CceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCC--eEEEEEEcC--------c--cCCC
Confidence 457777542 34577888877652 2343 56677899996 488877764 2 8899
Q ss_pred cEEEEE-eeEeecCCCCceEEEEEeEEEEEecCCCCCCCC
Q 012612 84 ASIWIQ-GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122 (460)
Q Consensus 84 ~~V~V~-G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~~ 122 (460)
|+|.|. |.+..- .+.++|.+.+...+.+.....|+.
T Consensus 64 dvv~i~ng~v~~~---~g~~~L~v~~~~~I~~~~~~~~~~ 100 (106)
T 2k75_A 64 DVVRIDNARVAQF---NGYLSLSVGDSSRIESVNVNIPLE 100 (106)
T ss_dssp EEEEEEEEEEEEE---TTEEEEEECTTSEEEECCSCCCCS
T ss_pred CEEEEEeeEEeEE---CCEEEEEECCcEEEEECCCCCccc
Confidence 999999 777653 246999998877777776556664
|
| >3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.56 Score=42.96 Aligned_cols=84 Identities=15% Similarity=0.223 Sum_probs=58.8
Q ss_pred CCCEEEEEEEEeeeccCC--------CeEEEEEEcCCCcc-ceEEEEeCCccchhh----HhccCCCCCcEEEEEeeEee
Q 012612 28 VGLMIVVAGWVRTLRAQS--------SVTFIEVNDGSCLS-NMQCVMTSDAEGYDQ----VKSGLITTGASIWIQGNVVP 94 (460)
Q Consensus 28 ~~~~V~v~GwV~~~R~~g--------~~~Fv~lrD~~~~~-~iQvv~~~~~~~~~~----~~~~~l~~g~~V~V~G~v~~ 94 (460)
+=+.|.|.|.|...+..- ..+|+.|-|.||.. .|.|.++... +.. +.. ...|.+|.|+|.+..
T Consensus 84 PI~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~--~~~~gl~l~~--~~~G~iV~VkG~i~~ 159 (220)
T 3kf8_A 84 PVNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQ--FKEVGLTLDK--KNYGKIVELEGEIYN 159 (220)
T ss_dssp EECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHH--HHTTTCCTTS--CCTTCEEEEEEEEEE
T ss_pred ccEEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHH--hhccCccccc--cCCCeEEEEEEEEEe
Confidence 347799999999997542 46899999999852 4666555321 111 122 558999999999986
Q ss_pred cCC-----CCceEEEEEeEEEEEecC
Q 012612 95 SQG-----SKQKVELKVNKIVLVGKS 115 (460)
Q Consensus 95 ~~~-----~~~~~El~~~~i~ils~~ 115 (460)
-.. +.-.-||.|+++.+++..
T Consensus 160 ~r~~~~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 160 WYDSINVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp CCCSTTTTSCCCEEEEEEEEEEEESS
T ss_pred eccccccccccceEEEEEEEEEeccC
Confidence 421 111469999999999875
|
| >1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3 | Back alignment and structure |
|---|
Probab=92.79 E-value=0.55 Score=38.74 Aligned_cols=84 Identities=15% Similarity=0.156 Sum_probs=57.7
Q ss_pred eeccccCCccCCCCCCCCEEEEEEEEeee---c----cCC--CeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCC
Q 012612 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTL---R----AQS--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (460)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~GwV~~~---R----~~g--~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g 83 (460)
+|+||... ...|.+.|.|.++ | +.| ...=+.|.|.|| .|.+.+..+.. .. +..|
T Consensus 4 ~I~dL~~~--------~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG--~I~~tlW~~~~-----~~--~~~G 66 (119)
T 1o7i_A 4 KVGNLKPN--------MESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETG--RVKLTLWGKHA-----GS--IKEG 66 (119)
T ss_dssp CGGGCCTT--------CSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTE--EEEEEEEGGGT-----TC--CCTT
T ss_pred EHHHCcCC--------CCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCC--EEEEEEECChh-----hc--CCCC
Confidence 46677442 2358888999877 4 224 355567799996 48888875432 24 8999
Q ss_pred cEEEEE-eeEeecCCCCceEEEEEeEEEEEecCC
Q 012612 84 ASIWIQ-GNVVPSQGSKQKVELKVNKIVLVGKSD 116 (460)
Q Consensus 84 ~~V~V~-G~v~~~~~~~~~~El~~~~i~ils~~~ 116 (460)
++|.|+ |.+..-+ +.++|.+.+...+.++.
T Consensus 67 ~vv~i~~g~v~~~~---g~~qL~i~~~~~i~~~~ 97 (119)
T 1o7i_A 67 QVVKIENAWTTAFK---GQVQLNAGSKTKIAEAS 97 (119)
T ss_dssp CEEEEEEEEEEEET---TEEEEEECTTCEEEECC
T ss_pred CEEEEEeEEEEEeC---CEEEEEECCCEEEEEcC
Confidence 999999 8886642 46899988765555553
|
| >3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A | Back alignment and structure |
|---|
Probab=92.73 E-value=0.38 Score=40.06 Aligned_cols=71 Identities=10% Similarity=0.162 Sum_probs=48.0
Q ss_pred CCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEE
Q 012612 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (460)
Q Consensus 27 ~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~ 106 (460)
..|+.|++-|+|.+++..|+.+-+.-.|+ +.++|.++.... ...+.+|.|.|+|.. ..+|.+
T Consensus 20 fvgk~VrivGkV~~~~~~g~~~~l~s~Dg---~~Vtv~l~~p~~---------~~l~~~vEViG~V~~------~~tI~~ 81 (121)
T 3kdf_A 20 FIDKPVCFVGRLEKIHPTGKMFILSDGEG---KNGTIELMEPLD---------EEISGIVEVVGRVTA------KATILC 81 (121)
T ss_dssp GTTCEEEEEEEEEEECTTSSEEEEECTTS---CEEEEECSSCCS---------SCCCSEEEEEEEECT------TSCEEE
T ss_pred hCCCeEEEEEEEEEEcCCCCEEEEEeCCC---CEEEEEeCCCCC---------cccCcEEEEEEEECC------CCeEEE
Confidence 68999999999999997777554433444 357777665221 222559999999974 245677
Q ss_pred eEEEEEecC
Q 012612 107 NKIVLVGKS 115 (460)
Q Consensus 107 ~~i~ils~~ 115 (460)
..+.-++..
T Consensus 82 ~~~~~fg~~ 90 (121)
T 3kdf_A 82 TSYVQFKED 90 (121)
T ss_dssp EEEEECCCS
T ss_pred EEEEecCCC
Confidence 766666543
|
| >1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* | Back alignment and structure |
|---|
Probab=91.22 E-value=0.91 Score=49.76 Aligned_cols=107 Identities=10% Similarity=-0.026 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhhhhCCceeecCceeecCCC----CCCCCceeeeccccCC-ccccccccHHHHH-HHHh----cC-C-
Q 012612 149 RVRNALAYATHKFFQENGFIWISSPIITASDC----EGAGEQFCVTTLDFFE-KPAFLTVSGQLNA-ETYA----TA-L- 216 (460)
Q Consensus 149 ~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~----eg~~~~F~v~~~~~~~-~~~~L~~Spql~l-~l~~----~g-~- 216 (460)
.-..++.+.+|+.|...||.|+-|-.+++... ....+.+.+. |-.. .-..||+|-=--+ +.+. .+ .
T Consensus 489 ~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~v~L~--NPis~d~svLRtsLlpgLL~~l~~N~~r~~~~ 566 (785)
T 1b7y_B 489 EAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLLL--NPLAPEKAALRTHLFPGLVRVLKENLDLDRPE 566 (785)
T ss_dssp THHHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEES--SCSSTTSSEECSCSHHHHHHHHHHHHHHSCCS
T ss_pred CHHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHhcCCCCCeEEEc--CCCchhhhhhhhhhHHHHHHHHHHHhhcCCCC
Confidence 34567888999999999999999888887531 1123334443 2222 2235776644432 4332 24 3
Q ss_pred -CceEEEecccccCCCCCCCCCCccceeeeeecC------------CCHHHHHHHHHHHHHHH
Q 012612 217 -SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF------------ADLKDDMACATAYLQYV 266 (460)
Q Consensus 217 -~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~------------~~~~~~~~~~e~li~~l 266 (460)
-|+||+|+||| + +|+.|+..-+.. .|+.++...+|.++..+
T Consensus 567 ~vrlFEiG~Vf~-~--------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~l 620 (785)
T 1b7y_B 567 RALLFEVGRVFR-E--------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARL 620 (785)
T ss_dssp CEEEEEEEEEES-S--------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeeeec-c--------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHc
Confidence 37999999999 2 689999876654 47999999999998876
|
| >1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.97 E-value=0.42 Score=39.16 Aligned_cols=92 Identities=10% Similarity=0.159 Sum_probs=62.1
Q ss_pred eeeeccccCCccCCCCCCCCEEEEEEEEeee---c------cCCCeEEEEEEcCCCccceEEEEeCCccchhhH-hccCC
Q 012612 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---R------AQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLI 80 (460)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~---R------~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~-~~~~l 80 (460)
.+.|++|... ....+|.|||.++ | ..|++.=++|.|.+| .|++++..+.. +.+ .. |
T Consensus 4 ~~~Is~L~p~--------~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~--~~f~~~--l 69 (114)
T 1ynx_A 4 IFAIEQLSPY--------QNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSG--EIRATAFNDFA--TKFNEI--L 69 (114)
T ss_dssp BCCGGGCCTT--------TCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTE--EEEEEECHHHH--HHHHHH--S
T ss_pred eEEHHHCCCC--------CCceEEEEEEEEeccceEEecCCCCceEEEEEEECCCC--eEEEEECHHHH--HHHHhh--c
Confidence 4667788653 2247899999865 2 136778888999997 59998876432 112 24 9
Q ss_pred CCCcEEEEEe-eEeecCCC----CceEEEEEeEEEEEecCC
Q 012612 81 TTGASIWIQG-NVVPSQGS----KQKVELKVNKIVLVGKSD 116 (460)
Q Consensus 81 ~~g~~V~V~G-~v~~~~~~----~~~~El~~~~i~ils~~~ 116 (460)
..|+++.+++ .|+..... ...+||....-+.+.+|.
T Consensus 70 ~eG~vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~ 110 (114)
T 1ynx_A 70 QEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECF 110 (114)
T ss_dssp CSSSEEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEESC
T ss_pred ccCcEEEECCcEEEECCCCcccCCCCEEEEECCCCEEEECC
Confidence 9999999986 44443221 347888887777777764
|
| >4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=89.76 E-value=0.55 Score=38.64 Aligned_cols=67 Identities=18% Similarity=0.296 Sum_probs=43.7
Q ss_pred CCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEE
Q 012612 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (460)
Q Consensus 27 ~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~ 106 (460)
+.|+.|++-|+|.+.+. +. +.|....+ +.|+|.++... . +..+..|.|.|+|.....+-|...|.+
T Consensus 16 ~~g~~VrivGkV~~~~g--~~--~~l~s~d~-~~Vtv~l~~~~-------~--~~~~~~vEViG~V~~~~~~~~~~~I~~ 81 (114)
T 4gop_A 16 YVGQTVRIVGKVHKVTG--NT--LLMQTSDL-GNVEIAMTPDS-------D--VSSSTFVEVTGKVSDAGSSFQANQIRE 81 (114)
T ss_dssp GTTSEEEEEEEEEEEET--TE--EEEECTTS-CEEEEECCSSC-------C--GGGCSEEEEEEEECTTSSEEEEEEEEE
T ss_pred hCCCeEEEEEEEeeeCC--CE--EEEEeCCC-CEEEEEeCCCC-------C--cccCcEEEEEEEEcCCCCcccCCeEEE
Confidence 68999999999999985 32 34664443 35676665432 2 556899999999975422212355555
Q ss_pred e
Q 012612 107 N 107 (460)
Q Consensus 107 ~ 107 (460)
.
T Consensus 82 ~ 82 (114)
T 4gop_A 82 F 82 (114)
T ss_dssp C
T ss_pred E
Confidence 3
|
| >3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A | Back alignment and structure |
|---|
Probab=88.95 E-value=1 Score=37.11 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=40.1
Q ss_pred eEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCCC
Q 012612 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121 (460)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p~ 121 (460)
|+|++..+.. +.++. ++.|+-|.|+|.+.........++|+++.|+.|+.....-|+
T Consensus 49 i~vv~~Gk~A--E~~~~--l~kGs~V~VeGrL~trs~~G~kl~l~a~~Ie~l~~~~~~~~~ 105 (115)
T 3fhw_A 49 ISAVALGDLA--LLLAD--TPLGTEMQVQGFLAPARKDSVKVKLHLQQARRIAGSMGRDPL 105 (115)
T ss_dssp EEEEEETHHH--HHHTT--CCTTCEEEEEEEEEESSTTCSSEEEEEEEEEECCCSCCC---
T ss_pred EEEEEEhHHH--Hhhhc--cCCCCEEEEEEEEEECCCCCCEEEEEEEEEEEcCCCCCCCCc
Confidence 7788776432 22445 999999999999987533225799999999999876544454
|
| >2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* | Back alignment and structure |
|---|
Probab=87.02 E-value=0.59 Score=53.40 Aligned_cols=80 Identities=10% Similarity=0.202 Sum_probs=47.1
Q ss_pred CCCCEEEEEEEEeeeccC-----CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCce
Q 012612 27 RVGLMIVVAGWVRTLRAQ-----SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (460)
Q Consensus 27 ~~~~~V~v~GwV~~~R~~-----g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~ 101 (460)
..|+.|+|+|.|.+++.. +.++|+.|.|.+|. +.+++-++. |+..+. .|..+.+|.|+|+|.... .
T Consensus 1040 ~~g~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg~--~evvvf~~~--~~~~~~-~l~~~~~~~v~G~v~~~~----~ 1110 (1220)
T 2hpi_A 1040 PGKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGA--LEVVVFGRA--YEGVSP-KLKEDIPLLVLAEVEKGE----E 1110 (1220)
T ss_dssp SSSCEEEEEEEECCC------------CEEEEETTEE--EEEC----------------CTTCEEEEEEEEC--------
T ss_pred cCCCeEEEEEEEEEEEEeecCCCCeEEEEEEEECCCC--EEEEEcHHH--HHHHHH-HhccCCEEEEEEEEEECC----C
Confidence 357889999999988752 24999999999964 888877653 444432 489999999999998643 3
Q ss_pred EEEEEeEEEEEecC
Q 012612 102 VELKVNKIVLVGKS 115 (460)
Q Consensus 102 ~El~~~~i~ils~~ 115 (460)
+.|.+.++.-++.+
T Consensus 1111 ~~l~~~~i~~l~~~ 1124 (1220)
T 2hpi_A 1111 LRVLAQAVWTLEEV 1124 (1220)
T ss_dssp -CEEEEEEEEHHHH
T ss_pred cEEEEeeeecHHHH
Confidence 67888888766554
|
| >2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C | Back alignment and structure |
|---|
Probab=85.49 E-value=4.5 Score=34.44 Aligned_cols=71 Identities=11% Similarity=0.148 Sum_probs=45.2
Q ss_pred CCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEE
Q 012612 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELK 105 (460)
Q Consensus 26 ~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~ 105 (460)
+..|+.|++-|+|.+.-..|+.+ .+....+ +.|+|.++... . -..+-+|.|.|+|.. ..+|.
T Consensus 40 ~fvGk~VriVGkV~~~~~~G~~~--~l~s~Dg-~~VtV~l~~pL-------~--~~~~~~VEViG~V~~------~~tI~ 101 (142)
T 2pi2_E 40 QFIDKPVCFVGRLEKIHPTGKMF--ILSDGEG-KNGTIELMEPL-------D--EEISGIVEVVGRVTA------KATIL 101 (142)
T ss_dssp GSTTCEEEEEEEEEEECTTSSEE--EEECTTS-CEEEEECSSCC-------S--SCCCSEEEEEEEECT------TSCEE
T ss_pred hhCCCEEEEEEEEeEEcCCCCEE--EEEeCCC-cEEEEEeCCCC-------C--ccCCCEEEEEEEECC------CCcEE
Confidence 36899999999999984445543 4555444 35666654321 1 234779999999954 23455
Q ss_pred EeEEEEEec
Q 012612 106 VNKIVLVGK 114 (460)
Q Consensus 106 ~~~i~ils~ 114 (460)
+..+.-++.
T Consensus 102 ~~~~~~fGd 110 (142)
T 2pi2_E 102 CTSYVQFKE 110 (142)
T ss_dssp EEEEEECCC
T ss_pred EEEEEecCC
Confidence 665555544
|
| >1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A | Back alignment and structure |
|---|
Probab=82.48 E-value=9.5 Score=32.14 Aligned_cols=91 Identities=22% Similarity=0.283 Sum_probs=56.7
Q ss_pred eeeccccCCcc--CCCCCCCCEEEEEEEEe--ee-cc--CCCeEEEEEEc-CCCccceEEEEeCCccchhhHhccCCCCC
Q 012612 12 LKIVDVKGGPN--EGLDRVGLMIVVAGWVR--TL-RA--QSSVTFIEVND-GSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (460)
Q Consensus 12 ~~i~~l~~~~~--~~~~~~~~~V~v~GwV~--~~-R~--~g~~~Fv~lrD-~~~~~~iQvv~~~~~~~~~~~~~~~l~~g 83 (460)
.+..|+..... +.....++.++|.|.|. ++ |. ...+.|. |.| +. ..|.|....-.++ +.+.|
T Consensus 13 ~tpsei~~~~~~~~~~~~~g~~iRvgG~V~~GSv~r~~~~~~v~F~-vtD~~~--~~v~V~Y~GilPD-------lFrEG 82 (136)
T 1j6q_A 13 YTPSEIVNGKTDTGVKPEAGQRIRVGGMVTVGSMVRDPNSLHVQFA-VHDSLG--GEILVTYDDLLPD-------LFREG 82 (136)
T ss_dssp ECTTTTTTTSTTTTSSSCTTCEEEEEEEECTTCCEECTTSSCEEEE-EECTTC--CCEEEEECSCCTT-------SCCSS
T ss_pred eCHHHHHcCcccccccCCCCCEEEEeEEEeCCcEEecCCCCEEEEE-EEcCCC--CEEEEEECCCCCc-------cccCC
Confidence 45667765310 00135789999999996 44 43 2458875 788 54 4688887765432 37889
Q ss_pred cEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCC
Q 012612 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120 (460)
Q Consensus 84 ~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p 120 (460)
.-|.|+|++... + .+.++ +||.||+..|.
T Consensus 83 qgVVa~G~l~~~--g----~F~A~--eVLaKhdekY~ 111 (136)
T 1j6q_A 83 QGIVAQGVLGED--G----KLAAT--EVLAKHDENYM 111 (136)
T ss_dssp SEEEEEEEECST--T----SEEEE--EEECCC-----
T ss_pred CeEEEEEEECCC--C----eEEEE--EEEecCCCCCC
Confidence 999999999643 1 13444 58999987643
|
| >1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1 | Back alignment and structure |
|---|
Probab=82.04 E-value=10 Score=32.00 Aligned_cols=77 Identities=22% Similarity=0.366 Sum_probs=54.1
Q ss_pred CCCCCEEEEEEEEe--ee-cc--CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCc
Q 012612 26 DRVGLMIVVAGWVR--TL-RA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQ 100 (460)
Q Consensus 26 ~~~~~~V~v~GwV~--~~-R~--~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~ 100 (460)
...++.++|.|.|. ++ |. ...+.|. |.|+. ..|.|....-.++ +.+.|.-|.|+|++...
T Consensus 25 ~~~g~~iRvgG~V~~GSv~r~~~~~~v~F~-vtD~~--~~v~V~Y~GilPD-------lFrEGqgVVa~G~l~~~----- 89 (136)
T 1sr3_A 25 PEVGQRLRVGGMVMPGSVQRDPNSLKVTFT-IYDAE--GSVDVSYEGILPD-------LFREGQGVVVQGELEKG----- 89 (136)
T ss_dssp CCTTSEEEEEEEECTTTCEECSSSSEEEEE-EECSS--CEEEEEEESCCCT-------TCCTTSEEEEEEEECSS-----
T ss_pred CCCCCEEEEeeEEeCCcEEEcCCCCEEEEE-EEeCC--cEEEEEECCCCCc-------cccCCCeEEEEEEECCC-----
Confidence 35789999999998 34 43 2357775 78975 4688887765432 37889999999999642
Q ss_pred eEEEEEeEEEEEecCCCCCC
Q 012612 101 KVELKVNKIVLVGKSDPSYP 120 (460)
Q Consensus 101 ~~El~~~~i~ils~~~~~~p 120 (460)
-.+.++ +||.||+..|.
T Consensus 90 -g~F~A~--eVLAKhdekYm 106 (136)
T 1sr3_A 90 -NHILAK--EVLAKHDENYT 106 (136)
T ss_dssp -SEEEES--SCBCCSCCCCC
T ss_pred -CeEEEE--EEEecCCCCCC
Confidence 124555 48999987643
|
| >1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A | Back alignment and structure |
|---|
Probab=80.19 E-value=3 Score=38.61 Aligned_cols=93 Identities=14% Similarity=0.138 Sum_probs=61.3
Q ss_pred eeeeccccCCccCCCCCCCCEEEEEEEEeee---cc------CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCC
Q 012612 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (460)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~---R~------~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~ 81 (460)
.+.|++|... ...++|.|||.++ |. .|++.=++|.|.+| .|++++..+.. +.+. ..|.
T Consensus 8 ~~~I~~L~p~--------~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~--~~~~-~~l~ 74 (246)
T 1jmc_A 8 VVPIASLTPY--------QSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG--EIRATAFNEQV--DKFF-PLIE 74 (246)
T ss_dssp BCCGGGCCTT--------CCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEEHHHH--HHHG-GGCC
T ss_pred eEEHHHCCCC--------CCceEEEEEEEEecccceeeCCCCCceEEEEEEECCCC--eEEEEEChHHH--HHhh-hhcc
Confidence 4668888653 2347899999876 31 25666778999997 59998876432 1222 1399
Q ss_pred CCcEEEEEee-EeecCC----CCceEEEEEeEEEEEecCC
Q 012612 82 TGASIWIQGN-VVPSQG----SKQKVELKVNKIVLVGKSD 116 (460)
Q Consensus 82 ~g~~V~V~G~-v~~~~~----~~~~~El~~~~i~ils~~~ 116 (460)
.|+++.+++- |+.... ....+||....-+.+.+|.
T Consensus 75 ~G~vy~i~~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~ 114 (246)
T 1jmc_A 75 VNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCE 114 (246)
T ss_dssp TTCEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEECC
T ss_pred cCCEEEECCCEEEEcccCcccCCCCEEEEEcCCcEEEEcc
Confidence 9999999874 443211 1347888887666666664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 460 | ||||
| d1n9wa2 | 304 | d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (As | 4e-71 | |
| d1nnha_ | 293 | d.104.1.1 (A:) Hypothetical protein PF1951 {Archae | 7e-71 | |
| d1eova2 | 353 | d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (As | 7e-65 | |
| d1c0aa3 | 346 | d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synt | 2e-61 | |
| d1b8aa2 | 335 | d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (As | 7e-60 | |
| d1e1oa2 | 342 | d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS | 2e-59 | |
| d1l0wa3 | 356 | d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synt | 3e-55 | |
| d1n9wa1 | 93 | b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) | 2e-12 | |
| d1b8aa1 | 103 | b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS | 1e-10 | |
| d1eova1 | 134 | b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspR | 4e-09 | |
| d1l0wa1 | 104 | b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS | 2e-05 | |
| d1c0aa1 | 106 | b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS | 6e-05 |
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 304 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Score = 225 bits (574), Expect = 4e-71
Identities = 92/321 (28%), Positives = 144/321 (44%), Gaps = 23/321 (7%)
Query: 136 HLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFF 195
++ R A +V+ AL ++ F I +P + + EG F V D+F
Sbjct: 3 YVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGV---DYF 59
Query: 196 EKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDD 255
EK A+L S QL + VY P +R E +TSRHL E+ ++ E+ F ++D
Sbjct: 60 EKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEED 119
Query: 256 -MACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLI 314
M A L ++ L+ +++ +D +L++ +A +L
Sbjct: 120 LMRLEEALLAEMLEEALNTAGDEIRLLGATWPS---------FPQDIPRLTHAEAKRIL- 169
Query: 315 KAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTV 371
K E G DL E ER L E E +G + V+ YP+ ++ FY +DG T
Sbjct: 170 ----KEELGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEEDGTTR 225
Query: 372 AAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLG 431
+ L+ R E+ G QR R E L L ++ +++ YL++ YG PH GF +G
Sbjct: 226 S--FDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIG 283
Query: 432 FERLVQFATGVENIRDAIPFP 452
ERL Q G+ N+R A FP
Sbjct: 284 AERLTQKLLGLPNVRYARAFP 304
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 224 bits (572), Expect = 7e-71
Identities = 69/329 (20%), Positives = 116/329 (35%), Gaps = 50/329 (15%)
Query: 136 HLRPRTNTFGAVARVRNALAYATHKFFQENGFIW----ISSPIITASDCEGAGEQFCVTT 191
+ + ++ + FF + GF W I SPI + AGE
Sbjct: 2 AVEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAE 61
Query: 192 LDFFEKPAFLTVSGQL-NAETYATALSNVYTFGPTFRAEN--SNTSRHLAEFWMIEPELA 248
++ + LT S L A L ++ P R E+ + RH EF ++ E+
Sbjct: 62 VEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVE 121
Query: 249 FADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTD 308
A ++D M + + R + + +
Sbjct: 122 RAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTKRF------------------------ 157
Query: 309 AIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG 368
+ FE+ SE + + + I + + DG
Sbjct: 158 ---------EVFEY---------SEVLEEFGSDEKASQEMEEPFWIINIPREFYDREVDG 199
Query: 369 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSV-PHAG 427
+L GE+ G +RE E + ++ + LN DS+ YL++ G + P AG
Sbjct: 200 FWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAG 259
Query: 428 FGLGFERLVQFATGVENIRDAIPFPRTPG 456
G+G ERLV+F G ++I + PFPR PG
Sbjct: 260 AGIGVERLVRFIVGAKHIAEVQPFPRIPG 288
|
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 210 bits (536), Expect = 7e-65
Identities = 83/328 (25%), Positives = 141/328 (42%), Gaps = 11/328 (3%)
Query: 136 HLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFF 195
+ RT T A+ R++ + ++ F + +P + + EG F V +F
Sbjct: 32 VIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEV---TYF 88
Query: 196 EKPAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKD 254
+ A+L S Q N + A VY GP FRAENSNT RH+ EF ++ E+AF +
Sbjct: 89 KGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYH 148
Query: 255 DMACATAYLQY-VVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELL 313
++ + L + + +++ ++ + V+L+Y + IE+L
Sbjct: 149 EVLDTLSELFVFIFSELPKRFAHEIELVRKQYP---VEEFKLPKDGKMVRLTYKEGIEML 205
Query: 314 IKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAA 373
A K+ + + + L + + I+ +P EI+ FY + +
Sbjct: 206 RAAGKEIGDFEDLSTENEKFLGK-LVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSN 264
Query: 374 MDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD--SYWWYLDLRHYGSVPHAGFGLG 431
R E++ G+QR L+ R+ L+ + Y D YG PHAG G+G
Sbjct: 265 SYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIG 324
Query: 432 FERLVQFATGVENIRDAIPFPRTPGSVE 459
ER+V F ++NIR A FPR P +
Sbjct: 325 LERVVMFYLDLKNIRRASLFPRDPKRLR 352
|
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Score = 201 bits (513), Expect = 2e-61
Identities = 78/347 (22%), Positives = 131/347 (37%), Gaps = 37/347 (10%)
Query: 120 PIQKKRVSREFLRTKA-HLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
P+ V+ E R K +L R + R + +F ++GF+ I +P++T +
Sbjct: 3 PLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKA 62
Query: 179 DCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHL 237
EGA + + V + K L S QL + + Y FR E+ R
Sbjct: 63 TPEGARD-YLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQ- 120
Query: 238 AEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA 297
EF I+ E +F A ++++ L+ D+ F R +
Sbjct: 121 PEFTQIDVETSFMTAPQVREVMEALVRHLW---LEVKGVDLGDFPVMTFAEAERRYGSDK 177
Query: 298 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDL---QSEHERYLTEEAFGGCPVIVSDYP 354
+ + ++ W D + + E LT P
Sbjct: 178 P----------------DLRDESKWAPLWVIDFPMFEDDGEGGLTAMHH------PFTSP 215
Query: 355 KEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLN----RDS 410
K++ A ++ + A DM++ E+ GGS R + + L +N R+
Sbjct: 216 KDMTAAELKAAPENAVANAYDMVING-YEVGGGSVRIHNGDMQQTVFGILGINEEEQREK 274
Query: 411 YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 457
+ + LD YG+ PHAG G +RL TG +NIRD I FP+T +
Sbjct: 275 FGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAA 321
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Score = 197 bits (500), Expect = 7e-60
Identities = 103/345 (29%), Positives = 161/345 (46%), Gaps = 15/345 (4%)
Query: 117 PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIIT 176
P P K + + + R A+ ++R+++ A FF ENGFI I +P I
Sbjct: 3 PLDPTGKVKAELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKII 62
Query: 177 ASDCEGAGEQFCVTTLDFFEKPAFLTVSGQL-NAETYATALSNVYTFGPTFRAENSNTSR 235
A+ EG E F + +FE+ AFL S QL A+ L VY P FRAE NT+R
Sbjct: 63 ATATEGGTELFPM---KYFEEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTR 119
Query: 236 HLAEFWMI-EPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLS 294
HL E W I D ++ M+ + + + Y+ ++ +++D N +E+ +
Sbjct: 120 HLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKLP--- 176
Query: 295 TVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYP 354
F ++SY A+E+L K+ + + + +Y+ E + YP
Sbjct: 177 ------FPRVSYDKALEILGDLGKEIPWGEDIDTEGERLLGKYMMEN-ENAPLYFLYQYP 229
Query: 355 KEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWY 414
E K FY+ + D+ + L R E+ G QRE R + L ++ E LN +S+ +Y
Sbjct: 230 SEAKPFYIMKYDNKPEICRAFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPESFEFY 289
Query: 415 LDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 459
L YG PH GFGLG ERL++ + NIR+ I FPR +
Sbjct: 290 LKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFPRDRRRLT 334
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Score = 196 bits (499), Expect = 2e-59
Identities = 61/329 (18%), Positives = 110/329 (33%), Gaps = 19/329 (5%)
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPA 199
+ VR+ + A +F GF+ + +P++ + F +T + +
Sbjct: 15 ANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPF-ITHHNALDLDM 73
Query: 200 FLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACA 259
+L ++ +L + + RH EF M+E +A+AD D +
Sbjct: 74 YLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELT 133
Query: 260 TAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA------ERDFVQLSYTDAIELL 313
+ + + + +L K K A E D L DA + L
Sbjct: 134 ESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKAL 193
Query: 314 IKAKKKFEFLVKWGCD-LQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVA 372
+ WG + +E + E P +++YP E+ R + +
Sbjct: 194 AE-SIGITVEKSWGLGRIVTEIFDEVAEAHLI-QPTFITEYPAEVSPLARRNDVNPEITD 251
Query: 373 AMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS--------YWWYLDLRHYGSVP 424
+ + E+ G E R E + + Y+ YG P
Sbjct: 252 RFEFFIGG-REIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPP 310
Query: 425 HAGFGLGFERLVQFATGVENIRDAIPFPR 453
AG G+G +R++ T IRD I FP
Sbjct: 311 TAGLGIGIDRMIMLFTNSHTIRDVILFPA 339
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Score = 185 bits (471), Expect = 3e-55
Identities = 72/352 (20%), Positives = 122/352 (34%), Gaps = 36/352 (10%)
Query: 117 PSYPIQKK-------RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIW 169
P +P+ S E +L R R+R+ + A F GF+
Sbjct: 2 PPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQ 61
Query: 170 ISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETYATA-LSNVYTFGPTFRA 228
+ +P +T S EGA + L S QL + A L + FR
Sbjct: 62 VETPFLTKSTPEGARDFLVPYR-HEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRD 120
Query: 229 ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKG 288
E+ +F ++ E++F +++D + + +V R L ++ E
Sbjct: 121 EDLRA-DRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGVELPLPFPRLSYEEAM 179
Query: 289 IIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPV 348
Y L + +F ++V + E E T
Sbjct: 180 ER---------------YGSDKPDLRREGFRFLWVVDFPLLEWDEEEEAWTYM----HHP 220
Query: 349 IVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNR 408
S +P++ + + D GR A LV E+ GGS R L +
Sbjct: 221 FTSPHPED---LPLLEKDPGRVRALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGE 277
Query: 409 DS----YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 456
+ + ++L+ YG+ PH G G +RL+ TG +IR+ I FP+
Sbjct: 278 EEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKNKE 329
|
| >d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Score = 61.0 bits (148), Expect = 2e-12
Identities = 12/95 (12%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGAS 85
VG + + G++ R + F+ + D S + + +
Sbjct: 10 AHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGGLKLPLPES-----------A 58
Query: 86 IWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+ ++G VV + + +E++ ++ ++ + P
Sbjct: 59 LRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTP 93
|
| >d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Score = 56.2 bits (135), Expect = 1e-10
Identities = 15/89 (16%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
G + VAGWV ++ + F+ + D + + + + + +
Sbjct: 15 NGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQI-TAPKKKVDPELFKLIPKLRSEDVVA 73
Query: 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSD 116
++G V + +K E+ KIV++ +++
Sbjct: 74 VEGVVNFTPKAKLGFEILPEKIVVLNRAE 102
|
| >d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 134 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.4 bits (125), Expect = 4e-09
Identities = 16/117 (13%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSS-VTFIEVNDGSCLSNMQCVMTS 67
+K++K VD+ + + ++ V R Q + + F+ + + L
Sbjct: 21 QKRVKFVDLDEAKDSDKE-----VLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANK 75
Query: 68 DAEGYDQ--VKSGLITTGASIWIQGNVVPS-----QGSKQKVELKVNKIVLVGKSDP 117
+ +G + + + ++G V + Q +E+ + KI + ++
Sbjct: 76 EGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPE 132
|
| >d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Score = 41.2 bits (96), Expect = 2e-05
Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG +V+ GWV R + F+++ D L + + + +
Sbjct: 15 VGEEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVA----HPASPAYATAERVRPEWVVR 70
Query: 88 IQGNVVPSQGSKQK-----VELKVNKIVLVGKS 115
+G V + VE++++ + ++ ++
Sbjct: 71 AKGLVRLRPEPNPRLATGRVEVELSALEVLAEA 103
|
| >d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Score = 40.0 bits (93), Expect = 6e-05
Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + + GWV R S+ FI++ D + + + + I
Sbjct: 14 VGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRA---DALKLASELRNEFCIQ 70
Query: 88 IQGNVVPSQGSKQ-------KVELKVNKIVLVGKSD 116
+ G V ++E+ + + ++ ++D
Sbjct: 71 VTGTVRARDEKNINRDMATGEIEVLASSLTIINRAD 106
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 460 | |||
| d1eova2 | 353 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 100.0 | |
| d1e1oa2 | 342 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 100.0 | |
| d1b8aa2 | 335 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 100.0 | |
| d1n9wa2 | 304 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 100.0 | |
| d1c0aa3 | 346 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 100.0 | |
| d1l0wa3 | 356 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 100.0 | |
| d1nnha_ | 293 | Hypothetical protein PF1951 {Archaeon Pyrococcus f | 100.0 | |
| d1b8aa1 | 103 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 99.86 | |
| d1l0wa1 | 104 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 99.84 | |
| d1n9wa1 | 93 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 99.84 | |
| d1e1oa1 | 143 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 99.82 | |
| d1c0aa1 | 106 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 99.82 | |
| d1eova1 | 134 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 99.74 | |
| d1jjca_ | 266 | Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS | 99.5 | |
| d12asa_ | 327 | Asparagine synthetase {Escherichia coli [TaxId: 56 | 99.34 | |
| d1kmma2 | 322 | Histidyl-tRNA synthetase (HisRS) {Escherichia coli | 98.52 | |
| d1qe0a2 | 325 | Histidyl-tRNA synthetase (HisRS) {Staphylococcus a | 98.44 | |
| d1h4vb2 | 324 | Histidyl-tRNA synthetase (HisRS) {Thermus thermoph | 98.35 | |
| d1nyra4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a | 98.05 | |
| d1z7ma1 | 318 | ATP phosphoribosyltransferase regulatory subunit H | 98.02 | |
| d1qf6a4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Escherichia coli | 97.89 | |
| d1hc7a2 | 272 | Prolyl-tRNA synthetase (ProRS) {Thermus thermophil | 97.64 | |
| d1wu7a2 | 327 | Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop | 97.51 | |
| d1b76a2 | 331 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 97.42 | |
| d1nj8a3 | 268 | Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc | 97.31 | |
| d1seta2 | 311 | Seryl-tRNA synthetase (SerRS) {Thermus thermophilu | 96.91 | |
| d1nj1a3 | 265 | Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth | 96.79 | |
| d2pi2a1 | 128 | Replication protein A 32 KDa subunit (RPA32) fragm | 96.19 | |
| d1nnxa_ | 106 | Hypothetical protein YgiW {Escherichia coli [TaxId | 96.12 | |
| d1usya_ | 275 | ATP phosphoribosyltransferase regulatory subunit H | 95.93 | |
| d1o7ia_ | 115 | Archaeal ssDNA-binding protein {Archaeon Sulfolobu | 94.93 | |
| d1jmca1 | 116 | Replication protein A 70 KDa subunit (RPA70) {Huma | 93.48 | |
| d2pi2e1 | 115 | Replication protein A 14 KDa (RPA14) subunit {Huma | 93.28 | |
| d1g5ha2 | 290 | The aaRS-like accessory subunit of mitochondrial p | 91.83 | |
| d1atia2 | 394 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 91.76 | |
| d1gm5a2 | 180 | RecG "wedge" domain {Thermotoga maritima [TaxId: 2 | 89.89 | |
| d1jjcb5 | 207 | Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, | 85.77 | |
| d1wjja_ | 145 | Hypothetical protein At4g28440 (F20O9.120) {Thale | 80.07 |
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.9e-79 Score=619.24 Aligned_cols=325 Identities=25% Similarity=0.414 Sum_probs=271.5
Q ss_pred ChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHH
Q 012612 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQ 206 (460)
Q Consensus 127 ~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spq 206 (460)
+.|...++||||+|++.++++|++||+|+++||+||.++||+||+||+|+++++||++++|.+ .+++.++||+||||
T Consensus 23 ~~e~r~~~R~lDlr~~~~~~ilr~Rs~i~~~iR~ff~~~gflEV~TPiL~~~~~eg~~~~f~~---~~~~~~~yL~~Spe 99 (353)
T d1eova2 23 NLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEV---TYFKGKAYLAQSPQ 99 (353)
T ss_dssp CHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEE---EETTEEEEECSCTH
T ss_pred CHHHHhhhhHHhhCCHhHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCcchhccccc---eeeCCcceeccchh
Confidence 456666999999999999999999999999999999999999999999999999999999988 67899999999999
Q ss_pred HHHH-HHhcCCCceEEEecccccCCCCCCCCCCccceeeeeecCCC-HHHHHHHHHHHHHHHHHHHhccCcccccccccc
Q 012612 207 LNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMACATAYLQYVVRYILDNCKEDMDFFNTW 284 (460)
Q Consensus 207 l~l~-l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~-~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~ 284 (460)
+||| ++++|++||||||||||||++++.||||||||||||++|.+ ++++|+++|++++++++.+.+++...++.....
T Consensus 100 l~lk~ll~~g~~~vf~I~~~FR~E~~~~~rH~pEFtmLE~y~a~~d~~~~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~ 179 (353)
T d1eova2 100 FNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQ 179 (353)
T ss_dssp HHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hhhhhhhhcccccceeechhhhccccccccccchhcccccccccchhhHHHHHHHHHHHhhhccccchhhhhhhhhhccc
Confidence 9985 89999999999999999999988899999999999999997 899999999999999999887765444332211
Q ss_pred ccchhHhhhhhhhcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCccccccc
Q 012612 285 IEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQ 364 (460)
Q Consensus 285 ~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~ 364 (460)
... .......+.++.++++.+|++++++.+........++........+.+.+.+ ...++||+|||.+++|||++.
T Consensus 180 ~~~---~~~~~~~~~~~~ri~~~ea~~~l~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~~~~i~~~P~~~~p~~~~~ 255 (353)
T d1eova2 180 YPV---EEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKLVRDKY-DTDFYILDKFPLEIRPFYTMP 255 (353)
T ss_dssp SCC---CCCCCCTTCCCEEEEHHHHHHHHHHTTCCCCTTCCCCHHHHHHHHHHHHHHS-CCSEEEEECCBGGGSCTTBCB
T ss_pred Ccc---ceeeccCCCceeeeehHhhHHHHHHHhhhcccccccchhhHHHHHHHHHhhc-cCCcccccCCcHHHhhhhhCC
Confidence 110 0011123457889999999999998754332211121112222333333333 325789999999999998776
Q ss_pred cC-CccceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCccc--HHHHHHHHhcCCCCCcceeccHHHHHHHHcC
Q 012612 365 ND-DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS--YWWYLDLRHYGSVPHAGFGLGFERLVQFATG 441 (460)
Q Consensus 365 ~~-~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~--~~~yl~~~~~G~pp~~G~giGidRL~m~l~~ 441 (460)
++ +++++++|||+++|+ ||+|||+|+||+++|+++++..|++++. ++|||+|++||+|||||||||+|||+|+++|
T Consensus 256 ~~~~~~~a~rfeL~~~G~-El~nG~~e~~d~~~~~~r~~~~~~~~~~~~~~~yl~al~~G~PP~~G~glGiDRL~m~l~~ 334 (353)
T d1eova2 256 DPANPKYSNSYDFFMRGE-EILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLD 334 (353)
T ss_dssp CSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCCCCEEEEEEEHHHHHHHHTT
T ss_pred Chhhhhhhhceeeeeece-EEcceecccCCHHHHHHHHHHcCCChhhhHHHHHHHHhHcCCCCCceeeeHHHHHHHHHhC
Confidence 54 456899999999995 9999999999999999999999988764 7999999999999999999999999999999
Q ss_pred CCCccccccccCCCCCcc
Q 012612 442 VENIRDAIPFPRTPGSVE 459 (460)
Q Consensus 442 ~~~Irdv~~FPr~~~~~~ 459 (460)
.+|||||++|||++++|.
T Consensus 335 ~~~Irdvi~FPr~~~~~~ 352 (353)
T d1eova2 335 LKNIRRASLFPRDPKRLR 352 (353)
T ss_dssp CSSGGGGCSSCCBTTBCC
T ss_pred CCcHHheeCCCCCCCCCC
Confidence 999999999999999984
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Probab=100.00 E-value=6.1e-75 Score=583.73 Aligned_cols=322 Identities=20% Similarity=0.295 Sum_probs=251.7
Q ss_pred hhhhccccccC-CChhhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHH
Q 012612 129 EFLRTKAHLRP-RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQL 207 (460)
Q Consensus 129 ~~~r~~r~l~~-R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql 207 (460)
+...+|||||+ |++.++++|++||++++++|+||.++||+||+||+|++++++|++++|.|+. ++++.++||+||||+
T Consensus 3 ~~Rl~~R~lDl~r~~~~~~~~r~Rs~i~~~iR~ff~~~gFiEV~TPil~~~~~~~~~~~f~~~~-~~~~~~~yL~~Spql 81 (342)
T d1e1oa2 3 EVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHH-NALDLDMYLRIAPEL 81 (342)
T ss_dssp THHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEEE-TTTTEEEEECSCSHH
T ss_pred HhhhhcchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCccccCCCCCCcceeecc-cCCCcccccchhhHH
Confidence 34448999999 8899999999999999999999999999999999999999999999998754 789999999999999
Q ss_pred HHH-HHhcCCCceEEEecccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCcccc-----ccc
Q 012612 208 NAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDM-----DFF 281 (460)
Q Consensus 208 ~l~-l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i-----~~~ 281 (460)
||| +|++|++||||||||||+|++ +.||+||||||||||+|+|++|+|+++|+|+++++..+.+.+.... ++.
T Consensus 82 ~~k~~l~~g~~~vf~i~p~FR~E~~-~~rHl~EFtmlE~e~a~~~~~d~m~~~e~l~~~i~~~~~~~~~~~~~~~~~~~~ 160 (342)
T d1e1oa2 82 YLKRLVVGGFERVFEINRNFRNEGI-SVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFG 160 (342)
T ss_dssp HHHHHHHHTCCEEEEEEEEECCCCC-CC-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSEEEETTEEEETT
T ss_pred HHHHHhhhcccceeeeccccccccc-cccchHHHHHHHHHHHhhhhhhHHHhhhHHHHHHHHHHhCcchhhccchhcccC
Confidence 997 889999999999999999988 6699999999999999999999999999999999999987764222 111
Q ss_pred cccccchhHhhhhhhhc-CCCcccCHHHHHH-HHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCcc
Q 012612 282 NTWIEKGIIDRLSTVAE-RDFVQLSYTDAIE-LLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKA 359 (460)
Q Consensus 282 ~~~~~~~~~~~l~~~~~-~~~~~i~~~ea~~-~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~p 359 (460)
.++......+.+++... .++..++..++.. +.+..|...+....++..+.. .+..+.+..+. .|+||+|||..++|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~p~fi~~~P~~~~~ 238 (342)
T d1e1oa2 161 KPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTE-IFDEVAEAHLI-QPTFITEYPAEVSP 238 (342)
T ss_dssp SCCEEEEHHHHHHHHSTTCCGGGGGSHHHHHHHHHHTTCCCCTTCCHHHHHHH-HHHHHTGGGCC-SCEEEECCBGGGCT
T ss_pred CchhhhhHHHHHHHHhccccHhhhhhhHHHHHHHHHcCCCcccccchhHHHHH-HHHHhhHhhcc-CCCcCCCCccccCh
Confidence 12222222222222211 1222222222222 222333332221122222333 33344444555 89999999999999
Q ss_pred ccccccCCccceeeeecccCCceeeecHHHhhhhHHHHHHHHHH------cCCCccc--HHHHHHHHhcCCCCCcceecc
Q 012612 360 FYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE------LKLNRDS--YWWYLDLRHYGSVPHAGFGLG 431 (460)
Q Consensus 360 f~~~~~~~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~------~~~~~~~--~~~yl~~~~~G~pp~~G~giG 431 (460)
||++.++++.++++|||+++| +||+|||+|+|+++.+.+++++ .+.++.. .+|||+|++||+|||||||||
T Consensus 239 f~~~~~~~~~~~~~fdl~~~g-~El~~G~~r~~d~~~~~~r~~~~~~~~~~~~~~~~~~d~~yl~a~~~G~pPh~G~glG 317 (342)
T d1e1oa2 239 LARRNDVNPEITDRFEFFIGG-REIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIG 317 (342)
T ss_dssp TBCBCSSCTTBBSEEEEEETT-EEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHHHHHHHHCCSEEEEEEE
T ss_pred hhccccccchhhhhhhcccCC-EeecCCccccCCHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHhhCCCCCccchhHH
Confidence 998877777889999999999 5999999999999999988753 2333322 389999999999999999999
Q ss_pred HHHHHHHHcCCCCccccccccCCC
Q 012612 432 FERLVQFATGVENIRDAIPFPRTP 455 (460)
Q Consensus 432 idRL~m~l~~~~~Irdv~~FPr~~ 455 (460)
+|||+|+++|.+|||||++|||..
T Consensus 318 ~dRlvm~l~g~~nIrdvi~FPr~r 341 (342)
T d1e1oa2 318 IDRMIMLFTNSHTIRDVILFPAMR 341 (342)
T ss_dssp HHHHHHHHHTCSSGGGTSSSCCCC
T ss_pred HHHHHHHHhCCCcHHHhccCCCCC
Confidence 999999999999999999999964
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Probab=100.00 E-value=7.9e-75 Score=581.54 Aligned_cols=315 Identities=34% Similarity=0.572 Sum_probs=273.8
Q ss_pred ChhhhhccccccCCChhhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHH
Q 012612 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQ 206 (460)
Q Consensus 127 ~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spq 206 (460)
+.++..++||||+|++.++++|++||+|+++||+||.++||+||+||+|+.++++|++++|.+ +++++++||++|||
T Consensus 13 ~~~~r~~~R~ldlr~~~~~~~l~~Rs~i~~~iR~ff~~~gflEV~TPil~~~~~~~~~~~f~~---~~~~~~~yL~~SpE 89 (335)
T d1b8aa2 13 ELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPM---KYFEEDAFLAESPQ 89 (335)
T ss_dssp CHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCCSSSSSCCEE---EETTEEEEECSCSH
T ss_pred CHHHHhhchhheeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCccCCchhhhhccc---cccccccccccChH
Confidence 455566899999999999999999999999999999999999999999999999999999987 67899999999999
Q ss_pred HHHH-HHhcCCCceEEEecccccCCCCCCCCCCccceeeeeecCC-CHHHHHHHHHHHHHHHHHHHhccCcccccccccc
Q 012612 207 LNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTW 284 (460)
Q Consensus 207 l~l~-l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~-~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~ 284 (460)
+|+| ++++|++||||||||||||++++.||++||||+|+|+++. +++++|+++++++..+.+.+...+..++++.+..
T Consensus 90 ~~lkrll~~g~~~if~i~~~FR~e~~~~~rh~~Ef~~le~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 169 (335)
T d1b8aa2 90 LYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFE 169 (335)
T ss_dssp HHHHHGGGTTCCEEEEEEEEECCCSSCCSSCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCC
T ss_pred HHHHHHHhhhhhhHHHhhcccccccccccccchHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccchhhhhccc
Confidence 9986 8999999999999999999998889999999998888875 8999999999999999998876655444433221
Q ss_pred ccchhHhhhhhhhcCCCcccCHHHHHHHHHHHccccccccccccccchh----hhcccccccccCccEEEEeCCCcCccc
Q 012612 285 IEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE----HERYLTEEAFGGCPVIVSDYPKEIKAF 360 (460)
Q Consensus 285 ~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~----~e~~l~~~~~~~~p~~I~~fP~~~~pf 360 (460)
. ...+.+|+++++.+|++++++.+.+. .++.+++.. .+.++.+.... .++||+|||.+++||
T Consensus 170 ~---------~~~~~~~~r~~~~e~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~fi~~~P~~~~pl 235 (335)
T d1b8aa2 170 L---------EEPKLPFPRVSYDKALEILGDLGKEI----PWGEDIDTEGERLLGKYMMENENA-PLYFLYQYPSEAKPF 235 (335)
T ss_dssp C---------CCCCSSCCEEEHHHHHHHHHHTTCCC----CTTSCCCHHHHHHHHHHHHHHHCC-SEEEEESCBGGGSCT
T ss_pred c---------ccCCCCcccccHHHHHHHHHhhcccc----Ccccccccccccceeeeeeccccc-ccceeecChHHhhhc
Confidence 1 12456899999999999999876543 344455433 33444444333 678999999999999
Q ss_pred cccccCC-ccceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHH
Q 012612 361 YMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFA 439 (460)
Q Consensus 361 ~~~~~~~-~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l 439 (460)
|+...++ +.++++|||+++|+ ||+||++|++++++|+++++..|++++.++|||+|++||+|||||||||+|||+|++
T Consensus 236 ~~~~~~~~~~~a~rfel~~~G~-El~nG~~e~~~~~~~~~r~~~~~~~~e~~e~yl~al~~G~Pp~~G~glGiDRLvm~l 314 (335)
T d1b8aa2 236 YIMKYDNKPEICRAFDLEYRGV-EISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQM 314 (335)
T ss_dssp TBCEETTEEEEESEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTTSBCCCCEEEEEEEHHHHHHHH
T ss_pred cccccCCCcHHHHhhccccCce-eeecccchhcCHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCceeeeHHHHHHHHH
Confidence 9766544 46889999999997 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccccccCCCCCcc
Q 012612 440 TGVENIRDAIPFPRTPGSVE 459 (460)
Q Consensus 440 ~~~~~Irdv~~FPr~~~~~~ 459 (460)
||.+|||||++|||++++|.
T Consensus 315 ~~~~~IrdVi~FPr~~~~~~ 334 (335)
T d1b8aa2 315 LDLPNIREVILFPRDRRRLT 334 (335)
T ss_dssp TTCSCGGGGSSSCCBTTBCC
T ss_pred hCCCcHHheEcCCCCCCCCC
Confidence 99999999999999999874
|
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Probab=100.00 E-value=5.5e-74 Score=567.90 Aligned_cols=299 Identities=29% Similarity=0.459 Sum_probs=223.9
Q ss_pred cccccCCChhhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccccHHHHHHHHh
Q 012612 134 KAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTVSGQLNAETYA 213 (460)
Q Consensus 134 ~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~Spql~l~l~~ 213 (460)
|||||+|++.++++|++||+|+++||+||.++||+||+||+|++++++|+.++|.+ +++++++||++|||+|||+++
T Consensus 1 yR~ldlr~~~~~~~l~~Rs~i~~~iR~ff~~~gf~Ev~TP~l~~~~~e~~~~~f~~---~~~~~~~~L~~Spel~k~ll~ 77 (304)
T d1n9wa2 1 YRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGV---DYFEKRAYLAQSPQLYKQIMV 77 (304)
T ss_dssp CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC-------------------------------CHHHHHHHH
T ss_pred CCeEEecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCCCCCceECC---cccccchhccccHHHHHHHhh
Confidence 69999999999999999999999999999999999999999999999999998877 899999999999999999999
Q ss_pred cCCCceEEEecccccCCCCCCCCCCccceeeeeecCC-CHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHhh
Q 012612 214 TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDR 292 (460)
Q Consensus 214 ~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~-~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 292 (460)
+|++||||||||||+|++.++||+|||||||||++|. +++++|+++|++++.++..+.+.+...+...+...
T Consensus 78 ~g~~~if~i~~~FR~ee~~~~rh~~EF~~le~~~~~~~~~~~~~~l~E~l~~~~~~~~~~~~~~~~~~~~~~~------- 150 (304)
T d1n9wa2 78 GVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATW------- 150 (304)
T ss_dssp HHHSEEEEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCC-------
T ss_pred cccccceeehhhcccccccccccccHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccce-------
Confidence 9999999999999999987889999999999999986 68999999999999999998877655444333211
Q ss_pred hhhhhcCCCcccCHHHHHHHHHHHccccccccccccccchhhhccc----ccccccCccEEEEeCCCcCccccccccCCc
Q 012612 293 LSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYL----TEEAFGGCPVIVSDYPKEIKAFYMRQNDDG 368 (460)
Q Consensus 293 l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l----~~~~~~~~p~~I~~fP~~~~pf~~~~~~~~ 368 (460)
.....+++++++.||+++++..- ...++.++....++.+ .++... .|+||+|||.+++|||+.. .++
T Consensus 151 --~~~~~~~~~~~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~fi~~~P~~~~p~~~~~-~~~ 221 (304)
T d1n9wa2 151 --PSFPQDIPRLTHAEAKRILKEEL-----GYPVGQDLSEEAERLLGEYAKERWGS-DWLFVTRYPRSVRPFYTYP-EED 221 (304)
T ss_dssp --CCCSSSCCEEEHHHHHHHHHHTS-----CCCCCSSCCHHHHHHHHHHHHHHTCC-SEEEEECCBGGGSCTTBCB-CTT
T ss_pred --ecccchhhhhhHHHHHHHHHHHh-----CCCcCCCccHHHHHHHHHHHHhhcCC-ceEEEeCChhhhCchhhcc-ccc
Confidence 12345778999999999887641 1234455555555444 333334 7999999999999999654 445
Q ss_pred cceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCCcccc
Q 012612 369 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDA 448 (460)
Q Consensus 369 ~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~giGidRL~m~l~~~~~Irdv 448 (460)
+++++|||+++|+ ||+||++|++|+++|.++++..|++++.++|||+|++||+|||||||||+|||+|+++|.+|||||
T Consensus 222 ~~a~rfel~~~G~-El~nG~~e~~d~~~l~~r~~~~~~~~e~~~~yl~al~~G~PP~~G~glGiDRL~m~l~g~~~Irdv 300 (304)
T d1n9wa2 222 GTTRSFDLLFRGL-EITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYA 300 (304)
T ss_dssp SBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGBCCCSEEEEEEEHHHHHHHHTTCSSGGGG
T ss_pred ceeehhccccCcE-EEeccccccCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCceeehHHHHHHHHHhCCCcHHhe
Confidence 6889999999997 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 012612 449 IPFP 452 (460)
Q Consensus 449 ~~FP 452 (460)
++||
T Consensus 301 ~~FP 304 (304)
T d1n9wa2 301 RAFP 304 (304)
T ss_dssp CSCC
T ss_pred ecCC
Confidence 9999
|
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.5e-73 Score=569.41 Aligned_cols=311 Identities=23% Similarity=0.321 Sum_probs=256.8
Q ss_pred CCCCccccChhhhh-ccccccCCChhhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeeeccccCCc
Q 012612 119 YPIQKKRVSREFLR-TKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEK 197 (460)
Q Consensus 119 ~p~~~~~~~~~~~r-~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~ 197 (460)
+|++.+..+.+..| ++||||+|++.++++|++||+|+++||+||.++||+||+||+|++++++|++..|.. +..+++.
T Consensus 2 lP~~~~~~~~~e~Rl~~R~LdLr~~~~~~ilr~Rs~i~~~iR~ff~~~gFlEV~TPiL~~~~~~g~~~~~~~-~~~~~~~ 80 (346)
T d1c0aa3 2 LPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVP-SRVHKGK 80 (346)
T ss_dssp CSSCTTSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEEE-CSSSTTC
T ss_pred CCCCCCCCCCHHHHhhchHHhhCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCccccccccc-cccCCCc
Confidence 57765555555565 999999999999999999999999999999999999999999999999998886653 4467789
Q ss_pred cccccccHHHHHH-HHhcCCCceEEEecccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCcc
Q 012612 198 PAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE 276 (460)
Q Consensus 198 ~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~ 276 (460)
++||+||||+|+| ++++|++||||||||||||+++ .||+|||||||||++|.+++++|+++|+|+++++.++.+.+
T Consensus 81 ~~~L~~Spel~lk~ll~~g~~~Vf~i~~~FR~E~~~-~~H~~EFtmLE~e~a~~~~~~~m~~~E~li~~l~~~~~~~~-- 157 (346)
T d1c0aa3 81 FYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLR-ADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVD-- 157 (346)
T ss_dssp EEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCCB-TTBCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSCC--
T ss_pred cccCCcCHHHHHHHHhhcCCCceEEEeeeccccccC-chhhhHhhhhccccccccHhHhHHHHHHHHHHHHHHHhCCc--
Confidence 9999999999997 7889999999999999999994 57779999999999999999999999999999998876431
Q ss_pred ccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHccccccc----cccccccchhhhcccccccccCccEEEEe
Q 012612 277 DMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFL----VKWGCDLQSEHERYLTEEAFGGCPVIVSD 352 (460)
Q Consensus 277 ~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~----~~~~~~l~~~~e~~l~~~~~~~~p~~I~~ 352 (460)
..+|+++++.++...+.......... ..|+.++... + ...+.... .++++++
T Consensus 158 ---------------------~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~-~~~~~~l~-~~~~~~~ 213 (346)
T d1c0aa3 158 ---------------------LGDFPVMTFAEAERRYGSDKPDLRDESKWAPLWVIDFPMF-E-DDGEGGLT-AMHHPFT 213 (346)
T ss_dssp ---------------------CCSCCEEEHHHHHHHHSCSSCCTTCSSCCCEEEEECCBSE-E-ECSSSCEE-ESSCTTB
T ss_pred ---------------------CCccceeeHHHHHHHhcccccchhhHhhhhhhcccccccc-c-hhccccee-eeEeecc
Confidence 13678899999865442211111110 1122222110 1 11111112 4566778
Q ss_pred CCCcCccccccccCCccceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCc----ccHHHHHHHHhcCCCCCcce
Q 012612 353 YPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNR----DSYWWYLDLRHYGSVPHAGF 428 (460)
Q Consensus 353 fP~~~~pf~~~~~~~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~----~~~~~yl~~~~~G~pp~~G~ 428 (460)
+|...+|+++..++++.++++|||+++|+ ||+||++|+||+++++++++..|+++ +.++||++|++|||||||||
T Consensus 214 ~p~~~~~~~~~~~~~~~~a~~fdl~~~G~-El~nG~~rl~d~~~~~~r~~~~~~~~~~~~e~~~~ylda~~~G~PP~~G~ 292 (346)
T d1c0aa3 214 SPKDMTAAELKAAPENAVANAYDMVINGY-EVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGL 292 (346)
T ss_dssp CBSSCCHHHHHHSCTTCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTTCCCEEEE
T ss_pred ccchhhHHHhccCCccccccccccCcCCE-EEechhhhhchHHHHHHHHHHhCccccchHHHHHHHHHHHHCCCCCceeE
Confidence 89999999987777888999999999996 99999999999999999999999887 56889999999999999999
Q ss_pred eccHHHHHHHHcCCCCccccccccCCCCCc
Q 012612 429 GLGFERLVQFATGVENIRDAIPFPRTPGSV 458 (460)
Q Consensus 429 giGidRL~m~l~~~~~Irdv~~FPr~~~~~ 458 (460)
|||+|||+|++||.+|||||++|||++++.
T Consensus 293 glGldRL~m~l~g~~~Irdvi~FPRt~~~~ 322 (346)
T d1c0aa3 293 AFGLDRLTMLLTGTDNIRDVIAFPKTTAAA 322 (346)
T ss_dssp EEEHHHHHHHHHTCSCGGGGSSSCCCTTSC
T ss_pred eEHHHHHHHHHcCCCcHHheecCCCCCCCC
Confidence 999999999999999999999999999754
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=100.00 E-value=1.7e-72 Score=567.65 Aligned_cols=312 Identities=22% Similarity=0.331 Sum_probs=256.6
Q ss_pred CCCCCccccC------hhhhh-ccccccCCChhhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCCCCCCCceeee
Q 012612 118 SYPIQKKRVS------REFLR-TKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVT 190 (460)
Q Consensus 118 ~~p~~~~~~~------~~~~r-~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~ 190 (460)
++|++.+.++ .+++| ++||||+|++.++++|++||+|++++|+||.++||+||+||+|++++++|++..|. .
T Consensus 3 ~~p~~~~~~~~~~~~~~~~~Rl~~R~LdLR~~~~~~ilr~Rs~i~~~iR~ff~~~gfiEV~TP~L~~~~~eg~~~~~~-~ 81 (356)
T d1l0wa3 3 PFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLV-P 81 (356)
T ss_dssp SSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEE-E
T ss_pred CcccCcccccccccccCHHHHhhchhhhhCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCcccccchh-h
Confidence 4788765443 23355 99999999999999999999999999999999999999999999999999988775 4
Q ss_pred ccccCCccccccccHHHHHH-HHhcCCCceEEEecccccCCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHH
Q 012612 191 TLDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRY 269 (460)
Q Consensus 191 ~~~~~~~~~~L~~Spql~l~-l~~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~ 269 (460)
+.++++.++||++|||+|+| ++++|++|||+|+||||||+++ +||+|||||||||++|++++++|+++|+|++++++.
T Consensus 82 ~~~~~~~~~yL~~Spel~lk~ll~~g~~~Vf~i~~~FRaE~~~-t~H~~EFtmLE~e~~~~~~~~~m~~~E~li~~v~~~ 160 (356)
T d1l0wa3 82 YRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLR-ADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFRE 160 (356)
T ss_dssp CTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCCC-SSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccccCCCcChhHHHHHhhhcccCcEEEEeccccccccC-CcchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55889999999999999997 7899999999999999999995 589999999999999999999999999999999988
Q ss_pred HhccCccccccccccccchhHhhhhhhhcCCCcccCHHHHHHHHHHHccccc---cccccccccch--hhhccccccccc
Q 012612 270 ILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFE---FLVKWGCDLQS--EHERYLTEEAFG 344 (460)
Q Consensus 270 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~---~~~~~~~~l~~--~~e~~l~~~~~~ 344 (460)
+.+.+ ...+|++++|.+|+..+........ ....|+.++.. ..+......+ .
T Consensus 161 ~~~~~----------------------~~~~f~r~~~~~a~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~-~ 217 (356)
T d1l0wa3 161 ALGVE----------------------LPLPFPRLSYEEAMERYGSDKPDLRREGFRFLWVVDFPLLEWDEEEEAWTY-M 217 (356)
T ss_dssp HTCCC----------------------CCSSCCEEEHHHHHHHHSSSSCCCSCCSCCEEEEECCBSBCCCTTTSCCCB-S
T ss_pred HhCCC----------------------CCCCCCcchHHhhHHHHhcCcHhHHHHhhhhhhccccccccccchhcceee-e
Confidence 76432 2357899999999876543211110 01123333211 0111111112 2
Q ss_pred CccEEEEeCCCcCccccccccCCccceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcc----cHHHHHHHHhc
Q 012612 345 GCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWWYLDLRHY 420 (460)
Q Consensus 345 ~~p~~I~~fP~~~~pf~~~~~~~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~----~~~~yl~~~~~ 420 (460)
.|+|+++||....++++ +++...+++||||++|+ ||+|||+|+||+++|.++++..+++++ .++|||+|++|
T Consensus 218 -~~~f~~~~p~~~~~~~~--~~~~~~a~~FdL~~~G~-ElanG~~r~~d~~~~~~r~~~~~~~~~~~~~~~~~yl~a~~~ 293 (356)
T d1l0wa3 218 -HHPFTSPHPEDLPLLEK--DPGRVRALAYDLVLNGV-EVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEY 293 (356)
T ss_dssp -SCTTBCBCSTTTTHHHH--CGGGCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTB
T ss_pred -eCCcccCChhhhchhhc--CCCcceeeeeecccCCE-EeeccEEEeCcHHHHHHHHHHHcCCchhhHHHHHHHHHHhhC
Confidence 57899999988765543 33455788999999997 999999999999999999999888764 47899999999
Q ss_pred CCCCCcceeccHHHHHHHHcCCCCccccccccCCCCCc
Q 012612 421 GSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 458 (460)
Q Consensus 421 G~pp~~G~giGidRL~m~l~~~~~Irdv~~FPr~~~~~ 458 (460)
|+|||||||||+|||+|++||.+|||||++|||+++++
T Consensus 294 G~PP~~G~glGldRLlm~l~g~~~Irdvi~FPR~~~r~ 331 (356)
T d1l0wa3 294 GAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKNKEGK 331 (356)
T ss_dssp TCCCEEEEEEEHHHHHHHHHTCSSGGGGSSSCCCTTSC
T ss_pred CCCCcceEEEcHHHHHHHHcCCCcHHheecCCCCCCCC
Confidence 99999999999999999999999999999999999986
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.7e-70 Score=537.87 Aligned_cols=277 Identities=25% Similarity=0.405 Sum_probs=237.3
Q ss_pred cccCCChhhhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC----CC---CCCceeeeccccCCccccccccHHHH
Q 012612 136 HLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC----EG---AGEQFCVTTLDFFEKPAFLTVSGQLN 208 (460)
Q Consensus 136 ~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~----eg---~~~~F~v~~~~~~~~~~~L~~Spql~ 208 (460)
-||+|++.++++|++||+|++++|+||.++||+||+||+|++.+. ++ +..+|.+ +||++++||+||||+|
T Consensus 2 ~l~l~~~~~~~il~~Rs~i~~~iR~ff~~~gf~EV~tPil~~~~~~~~~~~~~~~~~~~~~---~~~~~~~yL~~SPel~ 78 (293)
T d1nnha_ 2 AVEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEV---EIYGVKMRLTHSMILH 78 (293)
T ss_dssp HHHHHTSCCHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCCCCCCEE---EETTEEEEECSCSHHH
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcCCcccccCCCCCCccccCccccccc---cCCCceeecccChhhh
Confidence 378999999999999999999999999999999999999987533 22 3445665 7999999999999999
Q ss_pred HH-HHhcCCCceEEEecccccCCC--CCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccc
Q 012612 209 AE-TYATALSNVYTFGPTFRAENS--NTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWI 285 (460)
Q Consensus 209 l~-l~~~g~~rvfeI~~~FR~E~~--~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~ 285 (460)
|| +|++|++||||||||||||++ +|.||||||||||||++|.+++|+|+++|++++++++.+.+.+..++.
T Consensus 79 lk~lla~g~~~Vf~I~~~FR~E~~~s~t~RH~~EFtmLE~e~~~~d~~d~m~~~e~li~~~~~~~~~~~~~~~~------ 152 (293)
T d1nnha_ 79 KQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFP------ 152 (293)
T ss_dssp HHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHHSSCCC------
T ss_pred HHHHHHhccccceeechhhhcCcccCCCCccchhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCcccc------
Confidence 97 899999999999999999964 467999999999999999999999999999999999987654432221
Q ss_pred cchhHhhhhhhhcCCCcccCHHHHHHHHHHHccccccccccccccchhhhcccccccccCccEEEEeCCCcCcccccccc
Q 012612 286 EKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN 365 (460)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~~~~~~~~p~~I~~fP~~~~pf~~~~~ 365 (460)
...+|+++++.||++. .|. |... .+. +. .|+|++|||. +||++.+
T Consensus 153 -----------~~~~~~~~~~~eal~~---~g~----------d~~~------~~~-~~-~p~~~~~~p~---~f~~~~~ 197 (293)
T d1nnha_ 153 -----------KTKRFEVFEYSEVLEE---FGS----------DEKA------SQE-ME-EPFWIINIPR---EFYDREV 197 (293)
T ss_dssp -----------CCSSCEEEEHHHHHHH---TSS----------HHHH------HHH-CS-SCEEEECCCC---CTTBCEE
T ss_pred -----------cCCccccccHHhhhcc---cCc----------cccc------ccc-cc-cceeccccch---hhccccc
Confidence 2347899999998643 221 1111 111 23 7999999994 5887766
Q ss_pred CCccceeeeecccCCceeeecHHHhhhhHHHHHHHHHHcCCCcccHHHHHHHHhcC-CCCCcceeccHHHHHHHHcCCCC
Q 012612 366 DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYG-SVPHAGFGLGFERLVQFATGVEN 444 (460)
Q Consensus 366 ~~~~~~~~fDl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~G-~pp~~G~giGidRL~m~l~~~~~ 444 (460)
++...+.+|+++++| +||+||++|+||+++|++++++.|++++.++|||+|++|| ||||||||||+|||+|+++|.+|
T Consensus 198 ~~~~~~~~~~l~~~g-~Elang~~el~d~~~~~~r~~~~gl~~e~~~~yl~a~~~G~mPP~~G~glGiDRL~m~l~g~~~ 276 (293)
T d1nnha_ 198 DGFWRNYDLILPYGY-GEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKH 276 (293)
T ss_dssp TTEECEEEEEETTTT-EEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHHHHTTCCCCEEEEEEEHHHHHHHHHTCSS
T ss_pred ccccccceeEecccC-cccccccccccCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCCeEeehHHHHHHHHhCCCc
Confidence 665677889999999 5999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred ccccccccCCCCC
Q 012612 445 IRDAIPFPRTPGS 457 (460)
Q Consensus 445 Irdv~~FPr~~~~ 457 (460)
||||++|||++|-
T Consensus 277 Irdv~~FPR~~g~ 289 (293)
T d1nnha_ 277 IAEVQPFPRIPGI 289 (293)
T ss_dssp GGGGCSSCCCTTS
T ss_pred HHheecCCCCCCC
Confidence 9999999999984
|
| >d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Probab=99.86 E-value=1.5e-21 Score=159.73 Aligned_cols=97 Identities=16% Similarity=0.317 Sum_probs=88.2
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccc---hhhHhccCCCCCcEE
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQVKSGLITTGASI 86 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~---~~~~~~~~l~~g~~V 86 (460)
|+|++.||.+. +.|+.|+|+|||+++|.+|+++|++|||++|. +|||++++..+ |+.+++ |+.||+|
T Consensus 3 RTh~~~el~~~------~~G~~V~v~Gwv~~~R~~g~i~Fi~LrD~sg~--iQ~v~~~~~~~~~~~~~~~~--l~~es~v 72 (103)
T d1b8aa1 3 RTHYSSEITEE------LNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGI--VQITAPKKKVDPELFKLIPK--LRSEDVV 72 (103)
T ss_dssp CSCCGGGCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEEETTTSCHHHHHHGGG--CCTTCEE
T ss_pred cccChhhCChh------HCCCEEEEEEEEehhccCCCcEEEEEEcCCEe--eeEEEeccccchhhhhHHhh--CCcceEE
Confidence 67999999775 78999999999999999999999999999974 99999887532 677888 9999999
Q ss_pred EEEeeEeecCCCCceEEEEEeEEEEEecCC
Q 012612 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSD 116 (460)
Q Consensus 87 ~V~G~v~~~~~~~~~~El~~~~i~ils~~~ 116 (460)
.|+|++.+++.+++++||.+++++|||+|+
T Consensus 73 ~V~G~v~~~~~~~~~iEi~v~~i~ils~a~ 102 (103)
T d1b8aa1 73 AVEGVVNFTPKAKLGFEILPEKIVVLNRAE 102 (103)
T ss_dssp EEEEEEEECTTSTTSEEEEEEEEEEEECBC
T ss_pred EEEEEEEECCCCCccEEEEeeEEEEEEecC
Confidence 999999999988889999999999999986
|
| >d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=99.84 E-value=9.2e-21 Score=154.84 Aligned_cols=98 Identities=18% Similarity=0.353 Sum_probs=87.8
Q ss_pred cceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEE
Q 012612 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88 (460)
Q Consensus 9 ~~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V 88 (460)
.|+|++.||.+. +.|++|+|+|||+++|.+|+++|++|||++|. +|++++.+...|+.+++ |+.||+|.|
T Consensus 2 ~RTh~~geL~~~------~~g~~V~l~GWV~~~R~~g~i~Fi~LRD~~G~--iQ~v~~~~~~~~~~~~~--l~~Es~I~V 71 (104)
T d1l0wa1 2 RRTHYAGSLRET------HVGEEVVLEGWVNRRRDLGGLIFLDLRDREGL--VQLVAHPASPAYATAER--VRPEWVVRA 71 (104)
T ss_dssp CCSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTEE--EEEEECTTSTTHHHHTT--CCTTCEEEE
T ss_pred ccccccccCChH------HCCCEEEEEEEEEehhcCCCeEEEEEECCCCc--eEEecccchhHHHHHhh--cCcccEEEE
Confidence 578999999764 89999999999999999999999999999975 99999987777888888 999999999
Q ss_pred EeeEeecCC-----CCceEEEEEeEEEEEecCC
Q 012612 89 QGNVVPSQG-----SKQKVELKVNKIVLVGKSD 116 (460)
Q Consensus 89 ~G~v~~~~~-----~~~~~El~~~~i~ils~~~ 116 (460)
+|+|.+++. .++++||.+++++|||+|.
T Consensus 72 ~G~V~~r~~~n~~~~tG~iEi~v~~i~iL~~ak 104 (104)
T d1l0wa1 72 KGLVRLRPEPNPRLATGRVEVELSALEVLAEAK 104 (104)
T ss_dssp EEEEEECSSCCTTSTTTTEEEEEEEEEEEECCC
T ss_pred EEEEeeCCccCCCCCCCCEEEEEeEEEEEEcCC
Confidence 999987664 2467999999999999983
|
| >d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Probab=99.84 E-value=1.7e-20 Score=150.69 Aligned_cols=92 Identities=17% Similarity=0.290 Sum_probs=81.8
Q ss_pred eeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEe
Q 012612 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90 (460)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G 90 (460)
|+.|+||.+ +.|+.|+|+|||+++|.+|+++|++|||++|. +||+++... . ++.||+|.|+|
T Consensus 2 R~~I~dl~~-------~~g~~V~v~GwV~~~R~~gk~~Fi~LrD~sg~--iQ~v~~~~~-------~--~~~e~~v~v~G 63 (93)
T d1n9wa1 2 RVLVRDLKA-------HVGQEVELLGFLHWRRDLGRIQFLLLRDRSGV--VQVVTGGLK-------L--PLPESALRVRG 63 (93)
T ss_dssp BCCGGGGGG-------CTTSEEEEEEEEEEEEECSSEEEEEEEETTEE--EEEEEESCC-------C--CCTTCEEEEEE
T ss_pred cEEhHHhhh-------cCCCEEEEEEEEEeEEeCCCcEEEEEEcCCcc--ceEEecccc-------c--cccceEEEEEE
Confidence 357888843 68999999999999999999999999999975 999998753 4 88999999999
Q ss_pred eEeecCCCCceEEEEEeEEEEEecCCCCCC
Q 012612 91 NVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120 (460)
Q Consensus 91 ~v~~~~~~~~~~El~~~~i~ils~~~~~~p 120 (460)
+|.+++.+++++||.++++++||+|..++|
T Consensus 64 ~v~~~~~~~~~~Ei~v~~i~il~~a~~plP 93 (93)
T d1n9wa1 64 LVVENAKAPGGLEVQAKEVEVLSPALEPTP 93 (93)
T ss_dssp EEEECTTSTTSEEEEEEEEEEEECCCSCCC
T ss_pred EEEECCCCCCCEEEEEeEEEEEecCCCCCC
Confidence 999999888899999999999999986555
|
| >d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Probab=99.82 E-value=1.4e-20 Score=162.75 Aligned_cols=112 Identities=19% Similarity=0.301 Sum_probs=94.7
Q ss_pred CCCccccceeeeccccCCccCC----CCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc---chhh-
Q 012612 3 SKVGEFRKKLKIVDVKGGPNEG----LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQ- 74 (460)
Q Consensus 3 ~~~~~~~~~~~i~~l~~~~~~~----~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~---~~~~- 74 (460)
|++++|+++++++++.+.|+.. ....+..|+|+|||.++|.+||++|++|+|.+| +||++++++.. .|+.
T Consensus 24 pYP~~~~~t~~~~ei~~~~~~~~~~~~~~~~~~V~vaGRI~~~R~~Gk~~F~~i~D~~g--~iQi~~~~~~~~~~~~~~~ 101 (143)
T d1e1oa1 24 AFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGG--RIQLYVARDSLPEGVYNDQ 101 (143)
T ss_dssp SSCCCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEETTTSSTTHHHHT
T ss_pred CCCCCCcCCccHHHHHHHHhcccchhhhccCceEEEEEEEEEEcccCCeeEEEEEeCCc--eEEEEEccccchhhhHHHH
Confidence 8899999999999999876421 112367899999999999999999999999995 59999997642 3554
Q ss_pred HhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEecCCCCCC
Q 012612 75 VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120 (460)
Q Consensus 75 ~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~~~~~p 120 (460)
.+. ++.||+|+|+|.+.+|++| +++|.|+++++|+||+.++|
T Consensus 102 ~k~--ld~GDiIgv~G~~~~TktG--Elsi~~~~~~lLsK~l~PLP 143 (143)
T d1e1oa1 102 FKK--WDLGDIIGARGTLFKTQTG--ELSIHCTELRLLTKALRPLP 143 (143)
T ss_dssp GGG--CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCSSCCC
T ss_pred Hhc--CCcccEEEeecccEECCCC--cEEEEeeEEEEeccccCCCC
Confidence 356 9999999999999999876 79999999999999986444
|
| >d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=3.4e-20 Score=152.25 Aligned_cols=97 Identities=18% Similarity=0.367 Sum_probs=84.7
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCcc-chhhHhccCCCCCcEEEE
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLITTGASIWI 88 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~-~~~~~~~~~l~~g~~V~V 88 (460)
|+|++.||.+. +.|+.|+|+|||+++|.+|+++|++|||++|. +||++..+.. .++.+++ |+.||+|.|
T Consensus 2 Rth~cgeL~~~------~~g~~V~v~GWv~~~R~~g~i~Fi~LRD~~G~--~Q~v~~~~~~~~~~~~~~--l~~Es~v~V 71 (106)
T d1c0aa1 2 RTEYCGQLRLS------HVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI--VQVFFDPDRADALKLASE--LRNEFCIQV 71 (106)
T ss_dssp CSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTEE--EEEEECGGGHHHHHHHTT--CCTTCEEEE
T ss_pred CceEcccCChH------HCCCEEEEEEEEEEeeeCCCcEEEEEEcCCeE--EeEEecccchhHHHHHHh--hCccceEEE
Confidence 68999999774 89999999999999999999999999999975 9999987643 3555777 999999999
Q ss_pred EeeEeecCCC-------CceEEEEEeEEEEEecCC
Q 012612 89 QGNVVPSQGS-------KQKVELKVNKIVLVGKSD 116 (460)
Q Consensus 89 ~G~v~~~~~~-------~~~~El~~~~i~ils~~~ 116 (460)
+|+|.+++.+ ++++||.+++++|||+|+
T Consensus 72 ~G~V~~r~~~~~n~~~~tg~iEi~v~~i~vl~~ad 106 (106)
T d1c0aa1 72 TGTVRARDEKNINRDMATGEIEVLASSLTIINRAD 106 (106)
T ss_dssp EEEEEECCTTTCCTTSTTTTEEEEEEEEEEEECCC
T ss_pred EeEEeccCccccCCCCCCCcEEEEEeEEEEEeCCC
Confidence 9999987643 357999999999999984
|
| >d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.74 E-value=7.7e-18 Score=144.18 Aligned_cols=99 Identities=18% Similarity=0.336 Sum_probs=82.6
Q ss_pred ceeeeccccCCccCCCCCCCCEEEEEEEEeeeccCC-CeEEEEEEcCCCccceEEEEeCCcc---c---hhhHhccCCCC
Q 012612 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAE---G---YDQVKSGLITT 82 (460)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g-~~~Fv~lrD~~~~~~iQvv~~~~~~---~---~~~~~~~~l~~ 82 (460)
.++.++|+.+. ++.|+.|+|+|||+++|.+| +++|++|||++|. +|+++..+.. . ++.+++ |+.
T Consensus 22 ~r~~i~dl~~~-----~~~g~~V~v~GwV~~~R~~G~kl~F~~LrD~sg~--iQ~~v~~~~~~~~~~~~~~~~~~--l~~ 92 (134)
T d1eova1 22 KRVKFVDLDEA-----KDSDKEVLFRARVHNTRQQGATLAFLTLRQQASL--IQGLVKANKEGTISKNMVKWAGS--LNL 92 (134)
T ss_dssp CCCCGGGCCTT-----TTTTCEEEEEEEEEEEEECSSSEEEEEEEETTEE--EEEEEECCSSSSSCHHHHHHHTT--CCT
T ss_pred EEEEeccccch-----hcCCCEEEEEEEEEEEEeCCCcEEEEEEEcCCCc--EEEEEEeccccchhHHHHHHHhc--CCC
Confidence 34667777554 57899999999999999987 6999999999964 9999987642 1 344677 999
Q ss_pred CcEEEEEeeEeecCCC-----CceEEEEEeEEEEEecCCC
Q 012612 83 GASIWIQGNVVPSQGS-----KQKVELKVNKIVLVGKSDP 117 (460)
Q Consensus 83 g~~V~V~G~v~~~~~~-----~~~~El~~~~i~ils~~~~ 117 (460)
||+|.|+|+|.+++.. .+++||++++|++||+|..
T Consensus 93 es~V~V~G~v~~~~~~~~~~~~~~~Ei~v~~i~vls~a~~ 132 (134)
T d1eova1 93 ESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPE 132 (134)
T ss_dssp TCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCCS
T ss_pred CCEEEEEEEEEeCCccCCCCCCCcEEEEEEEEEEEeCCCC
Confidence 9999999999998643 5789999999999999974
|
| >d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS species: Thermus thermophilus [TaxId: 274]
Probab=99.50 E-value=3.7e-14 Score=133.14 Aligned_cols=112 Identities=16% Similarity=0.154 Sum_probs=69.4
Q ss_pred HHHHHHHHHhhhhCCceeecCceeecC--CCC--------CC---CCceeeeccc---------cCCccccccc--cHHH
Q 012612 152 NALAYATHKFFQENGFIWISSPIITAS--DCE--------GA---GEQFCVTTLD---------FFEKPAFLTV--SGQL 207 (460)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~--~~e--------g~---~~~F~v~~~~---------~~~~~~~L~~--Spql 207 (460)
+++++.|+++|.+.||-|++.|.+.+. .-+ .+ .|.|-+.... ......-|++ |+-.
T Consensus 20 ~~~~~~i~~if~~~GF~~~~gp~ies~~~NFDaLn~P~dHPAR~~~DTfYi~~~~~~~~~~~~~~~~~~~lLRTHTS~~q 99 (266)
T d1jjca_ 20 TLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQ 99 (266)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTSGGGGGSCCCBEECSSCCEECTTSCEECSCEEECSSSTHHH
T ss_pred HHHHHHHHHHHHHcCCeEeeCCccccchhhhhcccCCcccchhcccceEEEecccccccCcccccchhhhhhccCCcHHH
Confidence 457888999999999999999987652 001 11 1233332100 0012234553 4422
Q ss_pred HHHHHhcCCC--ceEEEecccccCCCCCCCCCCccceeeeeecC--CCHHHHHHHHHHHHHH
Q 012612 208 NAETYATALS--NVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQY 265 (460)
Q Consensus 208 ~l~l~~~g~~--rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~--~~~~~~~~~~e~li~~ 265 (460)
. +.|..+.. |++.+|+|||+|.. +.+|+|+|.|+|.-... .++.+++..++.++++
T Consensus 100 ~-r~~~~~~~p~~~~~~g~VyRrd~i-D~tH~p~FhQ~eg~~vd~~~~~~~Lk~~l~~~~~~ 159 (266)
T d1jjca_ 100 V-RYMVAHTPPFRIVVPGRVFRFEQT-DATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQA 159 (266)
T ss_dssp H-HHHHHSCSSEEEEEEEEEECCSCC-CSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred H-HHHhccCCCceEEecccceecCCC-CCcccccceeeeeeeccccccHHHHHHHHHHHHHH
Confidence 2 45555553 78999999999998 68999999999976543 2455555554444443
|
| >d12asa_ d.104.1.1 (A:) Asparagine synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Asparagine synthetase species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=7e-12 Score=116.69 Aligned_cols=272 Identities=15% Similarity=0.113 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHHhhhh-----CCceeecCceeecCCCC------CCCCceeeeccccCCccccccccHHHHHHHHh--cC
Q 012612 149 RVRNALAYATHKFFQE-----NGFIWISSPIITASDCE------GAGEQFCVTTLDFFEKPAFLTVSGQLNAETYA--TA 215 (460)
Q Consensus 149 ~~Rs~i~~~iR~ff~~-----~gF~EV~TPiL~~~~~e------g~~~~F~v~~~~~~~~~~~L~~Spql~l~l~~--~g 215 (460)
....+.|..|+++|.. .+.+.|..|+++....+ |...|-.....+.-+..+-..+|-.-||++.. -+
T Consensus 3 i~tq~aI~~iK~~F~~~L~~~LnL~rVsAPLfv~~~sGlNDnLnG~ErpV~F~ik~~~~~~~EiVhSLAKWKR~aL~~y~ 82 (327)
T d12asa_ 3 IAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQHD 82 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCSSSTTCCEEECSCCTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcEEecCCeEEcCCCCcccCCCCeeeeeEEecCCCCCCeeEEEeehHHHHHHHHHhcC
Confidence 4455677778888854 59999999999975442 11223222222334677778899999998443 36
Q ss_pred C---CceEEEeccccc-CCCCCCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccccchhHh
Q 012612 216 L---SNVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIID 291 (460)
Q Consensus 216 ~---~rvfeI~~~FR~-E~~~~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 291 (460)
| +.+|+=+.+.|. |+.-+..|.--..|.|||.....-+.-++.+.+.++.++..+......-...++
T Consensus 83 f~~geGlytdMnAiR~DEd~ldn~HSiyVDQWDWEkvI~~~dR~l~~Lk~tV~~Iy~~ik~te~~v~~~y~--------- 153 (327)
T d12asa_ 83 FSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIKATEAAVSEEFG--------- 153 (327)
T ss_dssp CCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHSC---------
T ss_pred CCCCceeccCCccccCCcccCCCceeEEEcccchhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHHHhCC---------
Confidence 6 469999999986 553478999999999999987766666777777777777665432110000000
Q ss_pred hhhhhhcCCCcccCHHHHHHHHHHHccccccccccccccc-hhhhcccccccccCccEEEEeCCCcCc---cccccccCC
Q 012612 292 RLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQ-SEHERYLTEEAFGGCPVIVSDYPKEIK---AFYMRQNDD 367 (460)
Q Consensus 292 ~l~~~~~~~~~~i~~~ea~~~l~~~~~~~~~~~~~~~~l~-~~~e~~l~~~~~~~~p~~I~~fP~~~~---pf~~~~~~~ 367 (460)
+...+..++.=++.+|. +.. +. +++ .+.|..++..+ ..|||+.--..++ |--.+..+.
T Consensus 154 -~~~~Lp~~I~FitsqeL---~~~----------YP-~Lt~keRE~~i~ke~---gAVFi~~IG~~L~~G~~Hd~RApDY 215 (327)
T d12asa_ 154 -LAPFLPDQIHFVHSQEL---LSR----------YP-DLDAKGRERAIAKDL---GAVFLVGIGGKLSDGHRHDVRAPDY 215 (327)
T ss_dssp -CCCCSCSSCEEEEHHHH---HHH----------SS-SSCHHHHHHHHHHHH---SEEEEECCSSCCSSSCCSSCCCTTT
T ss_pred -cccCCCCceEEEehHHH---HHH----------CC-CCChHHHHHHHHHHh---CcEEEEecCCcCCCCCcCCCCCCCC
Confidence 00111111112233332 221 11 122 23455455444 3567766544332 221122222
Q ss_pred ccce---------eeeecccC------CceeeecHHHhhhhHHHHHHHHHHcCCCc-ccHHHHHHHHhcC-CCCCcceec
Q 012612 368 GRTV---------AAMDMLVP------RIGELIGGSQREERLEYLEGRLDELKLNR-DSYWWYLDLRHYG-SVPHAGFGL 430 (460)
Q Consensus 368 ~~~~---------~~fDl~~~------G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~-~~~~~yl~~~~~G-~pp~~G~gi 430 (460)
+.++ .+=|+++- .+ ||.+.+.|... +.+.++++..+-+. ..+. |-.++-.| +|.+-|.||
T Consensus 216 DDW~t~~~~~~~gLNGDIlvw~~vl~~a~-ElSSMGIRVd~-~~L~~QL~~~~~~~r~~l~-~Hk~ll~~~LP~TIGGGI 292 (327)
T d12asa_ 216 DDWSTPSELGHAGLNGDILVWNPVLEDAF-ELSSMGIRVDA-DTLKHQLALTGDEDRLELE-WHQALLRGEMPQTIGGGI 292 (327)
T ss_dssp BCCSSBCTTSSBCSEEEEEEEETTTTEEE-EEEEEEEBCCH-HHHHHHHHHHTCTTGGGSH-HHHHHHTTCSCCEEEEEE
T ss_pred CcccCcccccccCccceEEEechhcCcee-eeecceeEECH-HHHHHHHHHcCChhhhcCH-HHHHHHcCCCCccccccc
Confidence 3343 44455432 46 99999999955 88888888776543 2334 55555555 999999999
Q ss_pred cHHHHHHHHcCCCCcccccc
Q 012612 431 GFERLVQFATGVENIRDAIP 450 (460)
Q Consensus 431 GidRL~m~l~~~~~Irdv~~ 450 (460)
|-.||+|+|++..+|-||++
T Consensus 293 GQSRlcM~lL~KaHIGEVQa 312 (327)
T d12asa_ 293 GQSRLTMLLLQLPHIGQVQA 312 (327)
T ss_dssp EHHHHHHHHHTCSCGGGTSC
T ss_pred cHHHHHHHHHccCcccceee
Confidence 99999999999999999975
|
| >d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Escherichia coli [TaxId: 562]
Probab=98.52 E-value=2e-07 Score=89.79 Aligned_cols=103 Identities=16% Similarity=0.185 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC------CCC----CCceeeeccccCCcccccccc--HHHHHHHHh
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGA----GEQFCVTTLDFFEKPAFLTVS--GQLNAETYA 213 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~------eg~----~~~F~v~~~~~~~~~~~L~~S--pql~l~l~~ 213 (460)
.-.+.|..|.+.+++.|...||.+|+||++..... +.. ...+... +.-|+...|+.- +++-.-...
T Consensus 14 ~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~~~~~~--d~~g~~l~Lr~D~T~~iaR~~~~ 91 (322)
T d1kmma2 14 GETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFE--DRNGDSLTLRPEGTAGCVRAGIE 91 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCTTSHHHHHTCEEEE--CTTSCEEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeEeECcccccHHHhhcccCcchhhhHHHHhhhh--hcccccccccccccchhhHHHHh
Confidence 35677888999999999999999999999965321 111 1222221 445677777743 333332221
Q ss_pred cC-----CCceEEEecccccCCCCCCCCCCccceeeeeecCCC
Q 012612 214 TA-----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 214 ~g-----~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~ 251 (460)
.. --|+|++|+|||.|.....|. -||+|+.+|.-..+
T Consensus 92 ~~~~~~~p~r~~y~g~v~r~~~~~~gr~-re~~Q~g~EiiG~~ 133 (322)
T d1kmma2 92 HGLLYNQEQRLWYIGPMFRHERPQKGRY-RQFHQLGCEVFGLQ 133 (322)
T ss_dssp TTCSTTCCEEEEEEEEEECCCCCBTTBC-SEEEEEEEEEESCC
T ss_pred hhhhhhhhhhHhhcccccccCCCCCCcc-chhhhhhHHHhccc
Confidence 11 247899999999998755544 79999999987654
|
| >d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=98.44 E-value=7e-08 Score=93.25 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC------CCC----CCceeeeccccCCccccccccHHHHH-HH-Hh
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGA----GEQFCVTTLDFFEKPAFLTVSGQLNA-ET-YA 213 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~------eg~----~~~F~v~~~~~~~~~~~L~~Spql~l-~l-~~ 213 (460)
.-.+.|..+.+.+++.|.+.||.+|.||++..... +.. ...|... +..+....|+..+..-. +. ..
T Consensus 14 ~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~~~--d~~~~~~~lr~d~t~~~~r~~~~ 91 (325)
T d1qe0a2 14 EDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFK--DKGDRSITLRPEGTAAVVRSYIE 91 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEEC--HHHHCCEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeCcccccHHHhccccCCchhHHHHHHhhhh--ccccccccccccccccHHHHHHh
Confidence 35678899999999999999999999999875321 111 1233221 22234445554333222 21 11
Q ss_pred c----CC---CceEEEecccccCCCCCCCCCCccceeeeeecCCC
Q 012612 214 T----AL---SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 214 ~----g~---~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~ 251 (460)
. .. -|+|.+|+|||.+.....|. -||+|+.+|.-..+
T Consensus 92 ~~~~~~~~~p~R~~Y~g~VfR~~~~~~~~~-rE~~Q~G~EiiG~~ 135 (325)
T d1qe0a2 92 HKMQGNPNQPIKLYYNGPMFRYERKQKGRY-RQFNQFGVEAIGAE 135 (325)
T ss_dssp TTGGGCSSCSEEEEEEEEEECC-------C-CEEEEEEEEEESCC
T ss_pred hccccccccchhhheecceeeeccccCCcc-ceeeecceeecCCc
Confidence 1 12 28999999999997755444 69999999997664
|
| >d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Thermus thermophilus [TaxId: 274]
Probab=98.35 E-value=4.3e-06 Score=80.29 Aligned_cols=105 Identities=20% Similarity=0.326 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC----CCC------CCceeeeccccCCccccccc--cHHHHHHH
Q 012612 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC----EGA------GEQFCVTTLDFFEKPAFLTV--SGQLNAET 211 (460)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~----eg~------~~~F~v~~~~~~~~~~~L~~--Spql~l~l 211 (460)
+-.-.+.|..+.+.+++.|.+.||.||.||++-.... .|. ...|... +.-++...|+. .++....+
T Consensus 12 ~p~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~~~--d~~g~~l~LRpD~T~~iar~~ 89 (324)
T d1h4vb2 12 FGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQ--DRGGRSLTLRPEGTAAMVRAY 89 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCC------CCSCEEE--CTTSCEEEECCCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeEeeCCccccHHHhhcccCCchhHHHHHHhhhh--ccCCcccccccccccHHHHHH
Confidence 3456788899999999999999999999999964321 111 2233322 34466777773 23443333
Q ss_pred HhcC---C---CceEEEecccccCCCCCCCCCCccceeeeeecCCC
Q 012612 212 YATA---L---SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 212 ~~~g---~---~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~ 251 (460)
.... . -|+|.+|+|||.+..... ..-||+|+.+|.-..+
T Consensus 90 ~~~~~~~~~~p~r~~Y~g~VfR~~~~~~g-r~re~~Q~g~EiiG~~ 134 (324)
T d1h4vb2 90 LEHGMKVWPQPVRLWMAGPMFRAERPQKG-RYRQFHQVNYEALGSE 134 (324)
T ss_dssp HHTTGGGSSSSEEEEEEEEEECCCCC-----CCEEEEEEEEEESCC
T ss_pred HHhhhhhhchhhhheeeCcccccCcccCC-CcceeccccccccCCC
Confidence 3332 2 389999999999977433 4479999999987654
|
| >d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=98.05 E-value=3.4e-06 Score=79.93 Aligned_cols=117 Identities=12% Similarity=0.073 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-CC-------CCCceeeeccccCCccccccccHHHHHHHH-hcC-
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC-EG-------AGEQFCVTTLDFFEKPAFLTVSGQLNAETY-ATA- 215 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg-------~~~~F~v~~~~~~~~~~~L~~Spql~l~l~-~~g- 215 (460)
.-.+++.+|.+.+|+.+.+.||.||.||.|.+... ++ ..+.|.+.. .--+.+++|+...+...-++ ..-
T Consensus 28 ~G~~l~~~L~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sG~~~~~~~~~~~~~~-~~~~~~~~L~pt~e~~~~~~~~~~~ 106 (291)
T d1nyra4 28 NGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQ-LDETESMVLRPMNCPHHMMIYANKP 106 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEE-ETTTEEEEECSSSHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECccccchhHhhhhccccccccceEEEee-ccccccccccccchhHHHHhhhcEe
Confidence 35688899999999999999999999999998643 11 123443321 12256788998888876433 322
Q ss_pred -----C-CceEEEecccccCCCCCCCC----CCccceeeeeecCCCHHHHHHHHHHHHHH
Q 012612 216 -----L-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQY 265 (460)
Q Consensus 216 -----~-~rvfeI~~~FR~E~~~~~rH----l~EFt~lE~e~~~~~~~~~~~~~e~li~~ 265 (460)
+ -|+||+++|||+|.+. ..| .-||+|.|.+. |.+.+++.+.+++++..
T Consensus 107 ~sy~dLPlr~~~~~~~fR~E~~~-~~~Gl~Rvr~F~~~d~~~-f~~~eq~~~e~~~~~~~ 164 (291)
T d1nyra4 107 HSYRELPIRIAELGTMHRYEASG-AVSGLQRVRGMTLNDSHI-FVRPDQIKEEFKRVVNM 164 (291)
T ss_dssp CBGGGCCEEEEEEEEEECCCCTT-TCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHH
T ss_pred ccccccceEEeeccceeecCCCc-ccccccceeeeeeeehee-ecCCcccHHHHHHHHHH
Confidence 2 3899999999999762 221 35999999987 56666666666666544
|
| >d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Lactococcus lactis [TaxId: 1358]
Probab=98.02 E-value=5.7e-06 Score=79.10 Aligned_cols=103 Identities=16% Similarity=0.138 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCC------CCC----CCCceeeeccccCCccccccc--cHHHHHHHH-
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASD------CEG----AGEQFCVTTLDFFEKPAFLTV--SGQLNAETY- 212 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg----~~~~F~v~~~~~~~~~~~L~~--Spql~l~l~- 212 (460)
.-++.+..+.+.+++.|.+.||.||.||++.... +.+ ..+.|... +.-|+.+.|+. .+++-.-..
T Consensus 13 ~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~--d~~g~~l~LRpD~T~~iaR~~~~ 90 (318)
T d1z7ma1 13 NQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFI--KHEGQSITLRYDFTLPLVRLYSQ 90 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEE--CTTCCEEEECCCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHhhccCCCcccccccceeEee--cCCccEEEeeccccchHHHHHHH
Confidence 3567778899999999999999999999985321 111 12345443 34567777763 344432111
Q ss_pred --hcCCCceEEEecccccCCCCCCCCCCccceeeeeecCCC
Q 012612 213 --ATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 213 --~~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~ 251 (460)
.....|+|++|+|||+|... ..+..||+|+.+|.-..+
T Consensus 91 ~~~~~~~r~~Y~g~vfR~~~~~-~~r~rE~~Q~g~EiiG~~ 130 (318)
T d1z7ma1 91 IKDSTSARYSYFGKIFRKEKRH-KGRSTENYQIGIELFGES 130 (318)
T ss_dssp CCSCCCEEEEEEEECCCCCC--------CCEEEEEEEESSC
T ss_pred hcccCCcccccccceeEEcccc-ccccchhhhhheeccccc
Confidence 12346899999999999763 335579999999987665
|
| >d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Escherichia coli [TaxId: 562]
Probab=97.89 E-value=5.5e-06 Score=78.40 Aligned_cols=122 Identities=12% Similarity=0.129 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-C--C-----CCCceeeeccccCCccccccccHHHHH-HHHhcCC
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLDFFEKPAFLTVSGQLNA-ETYATAL 216 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g-----~~~~F~v~~~~~~~~~~~L~~Spql~l-~l~~~g~ 216 (460)
.-.+++.+|.+.+|+-+.+.||.||.||.|++... + | ..+.|.++ --+..++|+...+-.. .++..-.
T Consensus 28 ~G~~l~~~L~~~i~e~~~~~G~~eV~~P~L~~~~l~~~sG~~~~~~~~~~~~~---~~~~~~~L~Pt~e~~~~~~~~~~~ 104 (291)
T d1qf6a4 28 DGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTS---SENREYCIKPMNCPGHVQIFNQGL 104 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEE---ETTEEEEECSSSHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEEcccccchhHHhhhchhhhccchhcccc---ccchhhcccccCcHHHHHHHHccc
Confidence 34678899999999999999999999999998533 1 1 12344442 2356788988887665 3443322
Q ss_pred -------CceEEEecccccCCCC---CCCCCCccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhc
Q 012612 217 -------SNVYTFGPTFRAENSN---TSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILD 272 (460)
Q Consensus 217 -------~rvfeI~~~FR~E~~~---~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l~~~~~~ 272 (460)
-|+||+++|||+|... +-.=.-||+|-|.+. |..-++.++.++++++.+. .+..
T Consensus 105 ~sy~~LPl~~~q~~~~fR~E~~~~~~Gl~R~reF~~~d~h~-f~~~e~~~~e~~~~~~~~~-~i~~ 168 (291)
T d1qf6a4 105 KSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCTEEQIRDEVNGCIRLVY-DMYS 168 (291)
T ss_dssp EEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHHH-HHHG
T ss_pred cchhhcCeeEeecceeeecccccccccccccccceecccee-EecchhhHHHHHHHHHHHH-HHHH
Confidence 3799999999999541 111246999999998 6666677777777665443 4543
|
| >d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.64 E-value=0.00012 Score=67.80 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-CCCC--------Cceeeecc--ccCCccccccccHHHHH-HHH
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG--------EQFCVTTL--DFFEKPAFLTVSGQLNA-ETY 212 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~--------~~F~v~~~--~~~~~~~~L~~Spql~l-~l~ 212 (460)
-.=.+++.+|.+.+++.+.+.||.||.||+|..... ...+ +.|.+... +..+.+++|+.+.+-.. .++
T Consensus 37 P~G~~l~~~l~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sg~~~~~~~~~m~~~~~~~~~~~~~~~~L~pt~e~~~~~~~ 116 (272)
T d1hc7a2 37 PYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMW 116 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCeEEeeccccchHHhhhcccchhhcccceeeeeccccccccchhhcccccccceeehh
Confidence 345789999999999999999999999998876443 2211 22332211 11235678887777654 332
Q ss_pred hcC------C-CceEEEecccccCCCCCC-CCCCccceeeeeecCCCHHHHHHHHHHHHHHH
Q 012612 213 ATA------L-SNVYTFGPTFRAENSNTS-RHLAEFWMIEPELAFADLKDDMACATAYLQYV 266 (460)
Q Consensus 213 ~~g------~-~rvfeI~~~FR~E~~~~~-rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l 266 (460)
... + -|+||+++|||+|.+... .=.-+|+|.|.++...+.++..+..++.+...
T Consensus 117 ~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (272)
T d1hc7a2 117 SKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIY 178 (272)
T ss_dssp HHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred hceeccccccceeeeecccccccccccccccceEEEEEEhhhhhhcccccchhHHHHHHHHH
Confidence 222 2 379999999999965221 01258999999988778777766666555443
|
| >d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.51 E-value=0.00022 Score=67.91 Aligned_cols=103 Identities=15% Similarity=0.141 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCC------CCC-CCCceeeeccccCCccccccc--cHHHHHHHHhc-
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEG-AGEQFCVTTLDFFEKPAFLTV--SGQLNAETYAT- 214 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg-~~~~F~v~~~~~~~~~~~L~~--Spql~l~l~~~- 214 (460)
.+-...+..+...+++.|.+.||.+|.||++.... ++. ..+.|... +--|+.+.|+. .|+.-. ..+.
T Consensus 15 p~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~f~--D~~g~~l~LRpD~T~~iar-~~~~~ 91 (327)
T d1wu7a2 15 PEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFV--DKGGREVTLIPEATPSTVR-MVTSR 91 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEE--CTTSCEEEECSCSHHHHHH-HHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeECCccchHhhccccCchhHHHHHhhhh--cccchhhcccccccchhhh-Hhhhh
Confidence 44577889999999999999999999999886532 111 23355543 44577777763 333322 2222
Q ss_pred -C--C-CceEEEecccccCCCCCCCCCCccceeeeeecCCC
Q 012612 215 -A--L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 251 (460)
Q Consensus 215 -g--~-~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~~~~~ 251 (460)
. . -|+|++|+|||.+... ..+.-||+|+.+|.-..+
T Consensus 92 ~~~~~p~k~~y~g~VfR~~~~~-~g~~re~~Q~G~EiiG~~ 131 (327)
T d1wu7a2 92 KDLQRPLRWYSFPKVWRYEEPQ-AGRYREHYQFNADIFGSD 131 (327)
T ss_dssp TTCCSSEEEEECCEEECCCCSC-SSCCSEEEEEEEEEESCC
T ss_pred hhccccceeeccCcceeccccc-cCCcchhhhhhhhhcCCc
Confidence 2 2 3899999999999773 445579999999997665
|
| >d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.42 E-value=9.7e-05 Score=70.86 Aligned_cols=122 Identities=17% Similarity=0.187 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHhh--hhCCceeecCceeecCCC---CCCCCcee-----------------------eecc--ccCC
Q 012612 147 VARVRNALAYATHKFF--QENGFIWISSPIITASDC---EGAGEQFC-----------------------VTTL--DFFE 196 (460)
Q Consensus 147 ~~~~Rs~i~~~iR~ff--~~~gF~EV~TPiL~~~~~---eg~~~~F~-----------------------v~~~--~~~~ 196 (460)
=.++|..|.+.+|+.| .+.|+.||.||+|++..- -|.-+.|. +... ..-+
T Consensus 38 G~~l~~~i~~~wr~~~v~~~~~~~ev~tp~i~~~~lw~~SGH~~~f~d~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (331)
T d1b76a2 38 GVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVDNAKARYWTPPRYFNMMFQDLRGPRGGRG 117 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEEHHHHHHTSHHHHCEEEECBSSSCBCCCCCEEEECCEEEECSSSCCGG
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEeccccCChHHhccCccccccCCceeeecccccccCccchhhccccccccccccC
Confidence 5788999999999987 478999999999987431 11111111 0000 1113
Q ss_pred cccccc--ccHHHHH---HHHh-cC--C-CceEEEecccccCCCCCCCC----CCccceeeeeecCCCHHHHHHHHHHHH
Q 012612 197 KPAFLT--VSGQLNA---ETYA-TA--L-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMACATAYL 263 (460)
Q Consensus 197 ~~~~L~--~Spql~l---~l~~-~g--~-~rvfeI~~~FR~E~~~~~rH----l~EFt~lE~e~~~~~~~~~~~~~e~li 263 (460)
...||+ +++..+. +... +. + =+++|||+|||||-+ . || .=||||.|++. |.+-++..+.....+
T Consensus 118 ~~~~lr~~t~~~~~~~~~~~~~~syk~LP~~~aqig~~fR~E~s-~-~~gl~RvReFtq~D~~~-F~~~~q~~~~~~~~~ 194 (331)
T d1b76a2 118 LLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEIT-P-RNFIFRVREFEQMEIEY-FVRPGEDEYWHRYWV 194 (331)
T ss_dssp GEEEECSCTHHHHHTTHHHHHHHHTCCSSEEEEEEEEEECCCSS-C-CTTTTSCSEEEEEEEEE-EECGGGHHHHHHHHH
T ss_pred CcccccCcchhhHHHHHHhHHhccccccchhhhhccceeccccc-c-cccccccchhhhhhhhh-hcCCcchhHHHHHHH
Confidence 455666 3444432 2222 22 3 269999999999965 3 33 34999999997 677777777766666
Q ss_pred HHHHHHHh
Q 012612 264 QYVVRYIL 271 (460)
Q Consensus 264 ~~l~~~~~ 271 (460)
..+.+.+.
T Consensus 195 ~~~~~~~~ 202 (331)
T d1b76a2 195 EERLKWWQ 202 (331)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655544
|
| >d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
Probab=97.31 E-value=0.00043 Score=64.18 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHhhhhCCceeecCceeecCCC----CCC----C-Cceeeecc--ccCCccccccccHHHHH-HHHhc
Q 012612 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC----EGA----G-EQFCVTTL--DFFEKPAFLTVSGQLNA-ETYAT 214 (460)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~----eg~----~-~~F~v~~~--~~~~~~~~L~~Spql~l-~l~~~ 214 (460)
-.+++.+|.+.+|+-+.+.||.||.||.|.+... .+. . +.|.++.. +--+.+++|+...+-.. .++..
T Consensus 34 G~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~ks~~~~~~~~~~~~~~~~~~~~~~~~~~~L~P~~~~~~~~i~~~ 113 (268)
T d1nj8a3 34 GFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKL 113 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEeehhhhhhHhhhccCCCccccccceeEEeccccccchhhhhcccCCCchhHHhhhh
Confidence 4678999999999999999999999999875221 111 1 23333211 11134588888776654 44433
Q ss_pred CC-------CceEEEecccccCCCCCCC---CCCccceee-eeecCCCHHHHHHHHHHHHH
Q 012612 215 AL-------SNVYTFGPTFRAENSNTSR---HLAEFWMIE-PELAFADLKDDMACATAYLQ 264 (460)
Q Consensus 215 g~-------~rvfeI~~~FR~E~~~~~r---Hl~EFt~lE-~e~~~~~~~~~~~~~e~li~ 264 (460)
.. =|+||+++|||+|.. ..+ =.-||+|.| .+....+.++..+..+.++.
T Consensus 114 ~~~Syr~LP~r~~e~~~~fR~E~~-~~~GllR~reF~~~dd~~~~~~~~~~~~~~~~~~~~ 173 (268)
T d1nj8a3 114 WVKVHTDLPIKIYQIVNTFRYETK-HTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAIS 173 (268)
T ss_dssp TCCBTTSCCCCEEEEECCBCCCCS-CCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHH
T ss_pred hccchhhhheEEeecccccccccc-ccccceeEEEEeeechhceeccccchhhHHHHHHHH
Confidence 22 479999999999943 211 135898665 56655677776666655553
|
| >d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Seryl-tRNA synthetase (SerRS) species: Thermus thermophilus, strain hb27 [TaxId: 274]
Probab=96.91 E-value=0.0021 Score=60.62 Aligned_cols=122 Identities=19% Similarity=0.276 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCceeecCceeecCCC-CCCCC--ceeeeccccCCccccccccHHHHHHHHhcC------
Q 012612 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAGE--QFCVTTLDFFEKPAFLTVSGQLNAETYATA------ 215 (460)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~~--~F~v~~~~~~~~~~~L~~Spql~l~l~~~g------ 215 (460)
....++...+++.+.+++.++||.||.+|.|..... +|++. -|.-.....-+.+.||.-..|..+=.|-..
T Consensus 53 g~~a~Le~AL~~~~ld~~~~~gy~~v~~P~lv~~~~~~~~G~~p~f~~~~y~~~~~~~~LipTsE~~l~~~~~~~i~~~~ 132 (311)
T d1seta2 53 GDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAETDLYLTGTAEVVLNALHSGEILPYE 132 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBTTSSEEECSSTHHHHHHTTTTCEEEGG
T ss_pred CHHHHHHHHHHHHHHHhhhcccceEEeechhhccchhhhcccccccccccccccccceeecccccchhhhhhhhhhhhhh
Confidence 567788889999999999999999999999987543 22221 122111112245789987777655322111
Q ss_pred -CC-ceEEEecccccCCCC------CCCCCCccceeeeeec-CCCHHHHHHHHHHHHHHH
Q 012612 216 -LS-NVYTFGPTFRAENSN------TSRHLAEFWMIEPELA-FADLKDDMACATAYLQYV 266 (460)
Q Consensus 216 -~~-rvfeI~~~FR~E~~~------~~rHl~EFt~lE~e~~-~~~~~~~~~~~e~li~~l 266 (460)
+. |+++.++|||.|... +--...+|+.+|.... ..+.++..+..++++...
T Consensus 133 ~LPlr~~~~s~cfR~Eag~~g~~trGL~RvhQF~kvE~~~~~~~~~e~s~~~~~~~~~~~ 192 (311)
T d1seta2 133 ALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENA 192 (311)
T ss_dssp GCSEEEEEEEEEECCCCSCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHH
T ss_pred hccceEEeecccchhhhccccccchhhhhhcccchhhhheeeccccccchhHHHHHHHHH
Confidence 22 699999999999542 1123469999997653 346788877777777653
|
| >d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]
Probab=96.79 E-value=0.0014 Score=60.38 Aligned_cols=115 Identities=15% Similarity=0.152 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHhhhhCCceeecCceeecCC-C-------CC-CCCceeeeccc--cCCccccccccHHHHH-HHHh
Q 012612 146 AVARVRNALAYATHKFFQENGFIWISSPIITASD-C-------EG-AGEQFCVTTLD--FFEKPAFLTVSGQLNA-ETYA 213 (460)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~-~-------eg-~~~~F~v~~~~--~~~~~~~L~~Spql~l-~l~~ 213 (460)
.=.+++.+|.+.+++.+ ++||.||.||.|.+.. . ++ ..+.|.+.... --+.+++|+.+.+... .++.
T Consensus 31 ~G~~i~~~i~~~~~~~~-~~G~~ev~~P~l~~~~~l~~~sgh~~~~~~e~f~~~~~~~~~~~~~~~L~pt~~~~~~~~~~ 109 (265)
T d1nj1a3 31 HGFMIRKNTLKILRRIL-DRDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFA 109 (265)
T ss_dssp HHHHHHHHHHHHHHHHH-TTTCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH-HhcCceehhhhhhhhhhhhhcccccccccccceeeeccCccccceeEEeecccccceEEeee
Confidence 34577888999999876 5699999999876432 1 11 23456653211 1235678888776654 4333
Q ss_pred cC------C-CceEEEecccccCCCCCCCC----CCccceee-eeecCCCHHHHHHHHHHHH
Q 012612 214 TA------L-SNVYTFGPTFRAENSNTSRH----LAEFWMIE-PELAFADLKDDMACATAYL 263 (460)
Q Consensus 214 ~g------~-~rvfeI~~~FR~E~~~~~rH----l~EFt~lE-~e~~~~~~~~~~~~~e~li 263 (460)
.. + =|+||+++|||+|.. . +| .-|||++| .+....+.++.....+.++
T Consensus 110 ~~~~SyrdLPlr~~q~~~~fR~E~~-~-~~Gl~R~reF~~~~d~~~~~~~~~~~~~e~~~~~ 169 (265)
T d1nj1a3 110 LWVRSHTDLPMRFYQVVNTFRYETK-H-TRPLIRVREITTFKEAHTIHATASEAEEQVERAV 169 (265)
T ss_dssp HHCCBTTTCCEEEEEEEEEECCCCS-C-CBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred eeeccccccceEEEeeccceeeecc-c-CcCCEEEEEEEEeccceeecCCHHHHHHHhhhhH
Confidence 22 2 369999999999943 2 22 45998765 5554567666655444443
|
| >d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 32 KDa subunit (RPA32) fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.02 Score=46.26 Aligned_cols=78 Identities=14% Similarity=0.199 Sum_probs=54.4
Q ss_pred CEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccc-hhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeE
Q 012612 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (460)
Q Consensus 30 ~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~-~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~ 108 (460)
..|++.|+|.++.....-+-..|.|+|| ..|.|....+... ...... +..|+.|.|.|.++.-.. ...|.+..
T Consensus 29 ~~V~iVG~V~~i~~~~t~~~y~idDgTG-~~i~v~~w~~~~~~~~~~~~--i~~g~yVrV~G~lk~f~~---~~~i~~~~ 102 (128)
T d2pi2a1 29 SQVTIVGIIRHAEKAPTNIVYKIDDMTA-APMDVRQWVDTDDTSSENTV--VPPETYVKVAGHLRSFQN---KKSLVAFK 102 (128)
T ss_dssp SEEEEEEEEEEEEECSSEEEEEEECSSS-SCEEEEEECC-------CCC--CCTTCEEEEEEEEEEETT---EEEEEEEE
T ss_pred EEEEEEEEEEEEEecCCEEEEEEECCCC-CcEEEEEECCCCCCcccccc--ccCCCEEEEEEEEEeeCC---eEEEEEEE
Confidence 5689999999998876556668999997 2488877754321 111234 999999999999986532 46677776
Q ss_pred EEEEe
Q 012612 109 IVLVG 113 (460)
Q Consensus 109 i~ils 113 (460)
+..+.
T Consensus 103 i~~v~ 107 (128)
T d2pi2a1 103 IMPLE 107 (128)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 66443
|
| >d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Hypothetical protein YgiW family: Hypothetical protein YgiW domain: Hypothetical protein YgiW species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=0.011 Score=46.05 Aligned_cols=82 Identities=18% Similarity=0.220 Sum_probs=58.2
Q ss_pred eeeccccCCccCCCCCCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEee
Q 012612 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (460)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~ 91 (460)
.+++++.+- ..+..|+|.|.|.+.-...+.. ++|++| .|+|-++.+. |.- .. +++++-|.+.|.
T Consensus 25 ~tV~~a~~~------~Ddt~V~L~G~Iv~~l~~d~Y~---F~D~TG--~I~VeId~~~--w~g-~~--v~p~~kV~i~Ge 88 (106)
T d1nnxa_ 25 TTVESAKSL------RDDTWVTLRGNIVERISDDLYV---FKDASG--TINVDIDHKR--WNG-VT--VTPKDTVEIQGE 88 (106)
T ss_dssp CCHHHHTTS------CSSEEEEEEEEEEEEEETTEEE---EEETTE--EEEEECCGGG--STT-CC--CCTTSCEEEEEE
T ss_pred EhHHHHhhC------cCCCeEEEEEEEEEEeCCceEE---EECCCC--cEEEEEChhh--cCC-cc--cCCCCEEEEEEE
Confidence 455565543 4567799999998776655433 599996 4887765432 211 14 999999999999
Q ss_pred EeecCCCCceEEEEEeEEEEE
Q 012612 92 VVPSQGSKQKVELKVNKIVLV 112 (460)
Q Consensus 92 v~~~~~~~~~~El~~~~i~il 112 (460)
+-+.- + ..||.|+.|++|
T Consensus 89 vDk~~-~--~~eIdV~~I~~l 106 (106)
T d1nnxa_ 89 VDKDW-N--SVEIDVKQIRKV 106 (106)
T ss_dssp EEEET-T--EEEEEEEEEEEC
T ss_pred EcCCC-C--ceEEEEEEEEEC
Confidence 99763 2 589999998864
|
| >d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Thermotoga maritima [TaxId: 2336]
Probab=95.93 E-value=0.008 Score=55.35 Aligned_cols=97 Identities=11% Similarity=0.048 Sum_probs=60.0
Q ss_pred HhhhhCCceeecCceeecCCCCCCCCceeeeccccCCccccccc--cHHHHHHHHhcCCC---ceEEEecccccCCCCCC
Q 012612 160 KFFQENGFIWISSPIITASDCEGAGEQFCVTTLDFFEKPAFLTV--SGQLNAETYATALS---NVYTFGPTFRAENSNTS 234 (460)
Q Consensus 160 ~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~L~~--Spql~l~l~~~g~~---rvfeI~~~FR~E~~~~~ 234 (460)
+-..++||-||.||++......... .| . +--|+.+.||. .+++-.-......+ |+|.+|+|||.++.
T Consensus 14 ~~~~~~Gy~~i~tP~~E~~e~~~~~-~F-~---D~~g~~l~LRpD~T~~iaR~~~~~~~~~p~k~~Y~g~VfR~~~~--- 85 (275)
T d1usya_ 14 SKATKKGFSPFFVPALEKAEEPAGN-FF-L---DRKGNLFSIREDFTKTVLNHRKRYSPDSQIKVWYADFVYRYSGS--- 85 (275)
T ss_dssp HHHHHTTCEECCCCSEEECSSCCSS-CE-E---ETTSCEEEECCCHHHHHHHHHTTCTTCCCEEEECCEEEEEEETT---
T ss_pred HHHHHcCCceeecCccccccccccc-ee-E---cCCCCEEEECCCCcHHHHHHHHHcCCCCCeeeeEEeeEEEeCCC---
Confidence 3445799999999999886543322 34 2 34466677773 34443322222222 89999999998754
Q ss_pred CCCCccceeeeeecCCC-H---HHHHHHHHHHHHH
Q 012612 235 RHLAEFWMIEPELAFAD-L---KDDMACATAYLQY 265 (460)
Q Consensus 235 rHl~EFt~lE~e~~~~~-~---~~~~~~~e~li~~ 265 (460)
+.-||+|+.+|.-..+ . -|++.++-+.++.
T Consensus 86 -~~re~~Q~G~EiiG~~~~~aD~Evi~l~~~~l~~ 119 (275)
T d1usya_ 86 -DLVAEYQLGLEKVPRNSLDDSLEVLEIIVESASE 119 (275)
T ss_dssp -EEEEEEEEEEEEESCCSHHHHHHHHHHHHHHHHH
T ss_pred -cccceeecCceeechhhHHHHHHHHHHHHHHHHh
Confidence 2459999999986543 3 2445544444443
|
| >d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Archaeal ssDNA-binding protein species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.93 E-value=0.044 Score=43.32 Aligned_cols=84 Identities=17% Similarity=0.157 Sum_probs=57.7
Q ss_pred eeccccCCccCCCCCCCCEEEEEEEEeee---cc------CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCC
Q 012612 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (460)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~GwV~~~---R~------~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g 83 (460)
+|+||... ...|.|.|+|.++ |. .+++..+.|.|.+| +|.+++..+. +.. |..|
T Consensus 4 kI~dL~pg--------~~~v~i~~~V~~~~~~r~~~~~~g~~~v~~~~i~DeTG--~i~~~~W~~~-----~~~--l~~G 66 (115)
T d1o7ia_ 4 KVGNLKPN--------MESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETG--RVKLTLWGKH-----AGS--IKEG 66 (115)
T ss_dssp CGGGCCTT--------CSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTE--EEEEEEEGGG-----TTC--CCTT
T ss_pred cHHHCCCC--------CCCEEEEEEEEECCCCceeecCCCCEEEEEEEEEcCCC--eEEEEEeccc-----ccc--CCCC
Confidence 67777653 2348999999987 32 24677888999996 4999887532 234 9999
Q ss_pred cEEEEEeeEeecCCCCceEEEEEeEEEEEecC
Q 012612 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (460)
Q Consensus 84 ~~V~V~G~v~~~~~~~~~~El~~~~i~ils~~ 115 (460)
|+|.++|--.+.- .+.+||.+.+-..+.++
T Consensus 67 dvv~i~na~v~~~--~g~~el~~~~~s~i~~~ 96 (115)
T d1o7ia_ 67 QVVKIENAWTTAF--KGQVQLNAGSKTKIAEA 96 (115)
T ss_dssp CEEEEEEEEEEEE--TTEEEEEECTTCEEEEC
T ss_pred CEEEEeeEEEEEE--CCeEEEEECCCeEEEEC
Confidence 9999985433332 24799988664444444
|
| >d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 70 KDa subunit (RPA70) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.48 E-value=0.083 Score=41.62 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=61.6
Q ss_pred eeeccccCCccCCCCCCCCEEEEEEEEeee---c---c---CCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCC
Q 012612 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---R---A---QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITT 82 (460)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~---R---~---~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~ 82 (460)
+.|++|... ...++|.|||.++ | . .|++.-++|.|.+| .|++++..+.. +... ..|+.
T Consensus 3 ~PI~~L~p~--------~~~~~I~~RV~~k~~~r~f~~~~~~g~v~~~~l~De~G--~I~~t~~~~~~--~~f~-~~l~~ 69 (116)
T d1jmca1 3 VPIASLTPY--------QSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG--EIRATAFNEQV--DKFF-PLIEV 69 (116)
T ss_dssp CCGGGCCTT--------CCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEEHHHH--HHHG-GGCCT
T ss_pred EeHHHcCCC--------CCCEEEEEEEEEeccceEEECCCCCceEEEEEEEcCCC--CEEEEEchhhh--hhhH-hhccc
Confidence 457777653 3457899999754 2 2 25777888999997 49999986532 1122 13999
Q ss_pred CcEEEEEe-eEeecCC----CCceEEEEEeEEEEEecCC
Q 012612 83 GASIWIQG-NVVPSQG----SKQKVELKVNKIVLVGKSD 116 (460)
Q Consensus 83 g~~V~V~G-~v~~~~~----~~~~~El~~~~i~ils~~~ 116 (460)
|+++.++| .|+.... ....+||....-+.+.+|+
T Consensus 70 G~vy~i~~~~V~~~~~~y~~~~~~yei~f~~~T~I~~~~ 108 (116)
T d1jmca1 70 NKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCE 108 (116)
T ss_dssp TCEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEECC
T ss_pred CCEEEEcceEEEEccCcEeccCCcEEEEECCCcEEEECC
Confidence 99999986 4544322 2346899887777777764
|
| >d2pi2e1 b.40.4.3 (E:3-117) Replication protein A 14 KDa (RPA14) subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 14 KDa (RPA14) subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.28 E-value=0.12 Score=40.82 Aligned_cols=69 Identities=12% Similarity=0.142 Sum_probs=48.3
Q ss_pred CCCCEEEEEEEEeeeccCCCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecCCCCceEEEEE
Q 012612 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (460)
Q Consensus 27 ~~~~~V~v~GwV~~~R~~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~ 106 (460)
+.|+.|++-|+|.+++..|+.+ .+++..+ +.++|.+.+.. . ...+.+|.|.|+|.. ...|.+
T Consensus 18 ~~Gk~V~ivGkV~~v~~~g~~~--~~~s~D~-~~V~v~l~~~~-------~--~~~~~~vEViG~V~~------~~sI~~ 79 (115)
T d2pi2e1 18 FIDKPVCFVGRLEKIHPTGKMF--ILSDGEG-KNGTIELMEPL-------D--EEISGIVEVVGRVTA------KATILC 79 (115)
T ss_dssp STTCEEEEEEEEEEECTTSSEE--EEECTTS-CEEEEECSSCC-------S--SCCCSEEEEEEEECT------TSCEEE
T ss_pred hCCCeEEEEEEEEEEcCCCCEE--EEEcCCC-CEEEEEeCCCC-------C--CccCCeEEEEEEECC------CCcEEE
Confidence 7899999999999999877643 4665544 34666555432 2 677889999999943 344666
Q ss_pred eEEEEEe
Q 012612 107 NKIVLVG 113 (460)
Q Consensus 107 ~~i~ils 113 (460)
..+.-++
T Consensus 80 ~~~~~fg 86 (115)
T d2pi2e1 80 TSYVQFK 86 (115)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 6665554
|
| >d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.83 E-value=0.047 Score=50.43 Aligned_cols=70 Identities=10% Similarity=0.042 Sum_probs=42.1
Q ss_pred Cccccccc--cHHHHH---HHH-hcC--C-CceEEEecccccCCCC-CCCC----CCccceeeeeecCCCHHHHHHHHHH
Q 012612 196 EKPAFLTV--SGQLNA---ETY-ATA--L-SNVYTFGPTFRAENSN-TSRH----LAEFWMIEPELAFADLKDDMACATA 261 (460)
Q Consensus 196 ~~~~~L~~--Spql~l---~l~-~~g--~-~rvfeI~~~FR~E~~~-~~rH----l~EFt~lE~e~~~~~~~~~~~~~e~ 261 (460)
+..+||+. ++-.+. .++ ... + =++-|||+|||+|.+. +.++ .-||||+|++. |.+-++..+..+.
T Consensus 110 ~~~~yLRPetaqg~~~~fkn~~~~~~~~LPf~iaq~g~~fR~E~~~~~~~~gl~RvReF~q~E~~~-F~~pe~~~~~~~~ 188 (290)
T d1g5ha2 110 KTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVW-FTPTRTSSQWLDF 188 (290)
T ss_dssp HHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEE-EECHHHHHHHHHH
T ss_pred cccceeccccchhHHHHHHHHHhhccCCCCcEEEEeccccccccccCCcccccceeeEeEeeeeEE-EeCCcchHHHHHH
Confidence 34567875 444432 233 222 2 2589999999966321 1221 24999999997 7888887776666
Q ss_pred HHHHH
Q 012612 262 YLQYV 266 (460)
Q Consensus 262 li~~l 266 (460)
++...
T Consensus 189 ~~~~~ 193 (290)
T d1g5ha2 189 WLRHR 193 (290)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
|
| >d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=91.76 E-value=0.066 Score=51.17 Aligned_cols=57 Identities=25% Similarity=0.358 Sum_probs=36.6
Q ss_pred cccccc--cHHHH---HHHHhcC---CC-ceEEEecccccCCCCCCCC----CCccceeeeeecCCCHHHHHH
Q 012612 198 PAFLTV--SGQLN---AETYATA---LS-NVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMA 257 (460)
Q Consensus 198 ~~~L~~--Spql~---l~l~~~g---~~-rvfeI~~~FR~E~~~~~rH----l~EFt~lE~e~~~~~~~~~~~ 257 (460)
.+|||. +--.+ +.++-.. +. .+.|||+|||||=+ .|+ .-||||+|+|. |.+-++-.+
T Consensus 182 ~~yLRPETAQGiFvnF~~~l~~~r~KlPFGiAQIGk~FRNEIs--Pr~~l~R~REF~q~EiE~-Fv~P~~~~~ 251 (394)
T d1atia2 182 LAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEIT--PRNFIFRVREFEQMEIEY-FVRPGEDEY 251 (394)
T ss_dssp EEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSS--CCTGGGSCSEEEEEEEEE-EECGGGHHH
T ss_pred eeEEChhhhhHHHHHHHHHHHHcccCCCceeeeeccccccccC--cccCCcccccceeeeeEE-EEeCCcchH
Confidence 689984 33333 3333222 22 38999999999943 443 57999999998 666554433
|
| >d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: RecG "wedge" domain domain: RecG "wedge" domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.89 E-value=0.27 Score=41.50 Aligned_cols=65 Identities=12% Similarity=0.152 Sum_probs=43.4
Q ss_pred CCCCEEEEEEEEeeecc--C--CCeEEEEEEcCCCccceEEEEeCCccchhhHhccCCCCCcEEEEEeeEeecC
Q 012612 27 RVGLMIVVAGWVRTLRA--Q--SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (460)
Q Consensus 27 ~~~~~V~v~GwV~~~R~--~--g~~~Fv~lrD~~~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~ 96 (460)
..|+.|+|.|.|.+.+. . ..+.-+.+.|++|. |.+++=... -+...-+ ..+|+.|.|.|++....
T Consensus 58 ~~g~~vti~g~V~~~~~~~~~~~~~~~~~v~D~~g~--i~l~fFn~~-~~~~~~k--~~~G~~v~v~Gkvk~~~ 126 (180)
T d1gm5a2 58 LPGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLVH--VPLKWFNQD-YLQTYLK--QLTGKEVFVTGTVKSNA 126 (180)
T ss_dssp CSSCCCEEEECCCCCEEEECSSCEEEEEEECCSSCC--EEEEECSCC-TTHHHHH--TTCSSCEEEEEEECSCC
T ss_pred CcceeeeeeeEEEeeccccccccceeEEEEEeccce--EEEEEeCcH-HHHHHHh--hhcCceEEEEEEEeecc
Confidence 45777999999987643 2 34455778999864 888765432 1111112 45799999999997653
|
| >d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain species: Thermus thermophilus [TaxId: 274]
Probab=85.77 E-value=0.88 Score=39.09 Aligned_cols=108 Identities=9% Similarity=0.036 Sum_probs=61.5
Q ss_pred HHHHHHHhhhhCCceeecCceeecCCC----CCCCCceeeeccccCC-ccccccccHHHHH-HHH----hcCC-C--ceE
Q 012612 154 LAYATHKFFQENGFIWISSPIITASDC----EGAGEQFCVTTLDFFE-KPAFLTVSGQLNA-ETY----ATAL-S--NVY 220 (460)
Q Consensus 154 i~~~iR~ff~~~gF~EV~TPiL~~~~~----eg~~~~F~v~~~~~~~-~~~~L~~Spql~l-~l~----~~g~-~--rvf 220 (460)
..+.+|++|...||.||-|-.+++..- ....+...+. |-.. .--+||+|.=--+ +.+ ..+. + |+|
T Consensus 20 ~~~~ir~~L~~~Gf~Ev~tysf~s~~~~~~~~~~~~~i~l~--NPis~e~~~lR~sLlpgLL~~~~~N~~r~~~~~~~lF 97 (207)
T d1jjcb5 20 KEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLLL--NPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLF 97 (207)
T ss_dssp HHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEES--SCSSGGGSEECSCSHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred HHHHHHHHHHHCCcchhcCCCcCCHHHHHhhcCCCCcEEEe--CCcchhhhhhhhhcchHHHHHHHhCcccccccceeeE
Confidence 456689999999999999999987322 1112223332 3222 3347888765543 432 2343 3 689
Q ss_pred EEecccccCCCC------CCCCCCccceeeeeecCCCHHHHHHHHHHHHHHH
Q 012612 221 TFGPTFRAENSN------TSRHLAEFWMIEPELAFADLKDDMACATAYLQYV 266 (460)
Q Consensus 221 eI~~~FR~E~~~------~~rHl~EFt~lE~e~~~~~~~~~~~~~e~li~~l 266 (460)
|||++|+..+.. +..+.++.++-. .-.|+-++...++.++..+
T Consensus 98 EiG~vf~~~~~~~~~~~~~g~~~~~~~~~~---~~~df~~~Kg~v~~ll~~l 146 (207)
T d1jjcb5 98 EVGRVFREREETHLAGLLFGEGVGLPWAKE---RLSGYFLLKGYLEALFARL 146 (207)
T ss_dssp EEEEEESSSEEEEEEEEEEESCBSCTTSSC---CBCHHHHHHHHHHHHHHHH
T ss_pred eeeeeeeccccccchhhhhhcccccccccc---cchhHHHHHHHHHHHHHhh
Confidence 999999865331 112222222211 1125667777777666553
|
| >d1wjja_ b.40.4.3 (A:) Hypothetical protein At4g28440 (F20O9.120) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Hypothetical protein At4g28440 (F20O9.120) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.07 E-value=5.4 Score=31.90 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=56.0
Q ss_pred eeeccccCCccCCCCCCCCEEEEEEEEeeec-------c------------CCCeEEEEEEcCCCccceEEEEeCCccch
Q 012612 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR-------A------------QSSVTFIEVNDGSCLSNMQCVMTSDAEGY 72 (460)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~GwV~~~R-------~------------~g~~~Fv~lrD~~~~~~iQvv~~~~~~~~ 72 (460)
.+|+||... ...|.|.++|.++- . ..+++-+.+-|.+| +|.+.+..+.
T Consensus 17 ~kI~dL~pg--------~~~vnl~vkVl~~~~~~~~~r~~~~~~~~~~~g~~~~v~~~~v~DeTG--~i~~tlW~~~--- 83 (145)
T d1wjja_ 17 VKVEQLKPG--------TTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETG--CILFTARNDQ--- 83 (145)
T ss_dssp CCSTTCCTT--------CCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSC--EEEEEECTTH---
T ss_pred eEHHHCCCC--------CCCceEEEEEEEcccceeecccccccccccccCCCcEEEEEEEEccCC--eEEEEEEecc---
Confidence 578888653 34589999998752 1 12577788999996 4888887642
Q ss_pred hhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEE
Q 012612 73 DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (460)
Q Consensus 73 ~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~El~~~~i 109 (460)
... |.+||+|.+++-...--. +.++|.+.+.
T Consensus 84 --~~~--l~~Gd~v~i~na~v~~~~--G~~~L~vg~~ 114 (145)
T d1wjja_ 84 --VDL--MKPGATVILRNSRIDMFK--GTMRLGVDKW 114 (145)
T ss_dssp --HHH--TCTTCEEEEEEEEEEEET--TEEEEEECTT
T ss_pred --ccc--cCcCCEEEEeeEEEEEEC--CEEEEEECCC
Confidence 234 899999999976655433 3689988653
|