Citrus Sinensis ID: 012648

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
Protein Sequence
MGVKVANTCLQWTQRIIPQSPSSSQALASAISSPSSKRRSRSSCSSDIGPLVCRYVQGLDRSALFGPQLAKQPHRSRSCEYYPKPRIQHAVRRTCSASLDAFDENENETNCRDNAVNSESESRDSRDGFVDPPWEEDEIIQESIERKANSVDLPLSLRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMASNTSLAATPPPAAAYHEYASTVEVHNQRRHKFDSSSIKPFSVFSSRSGKTTSIGGNNGGGGKIRPIGSGTDGDGGIDRVDHFRTIVPDGASQLSSFGTTRDAESVSGQVDREEELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccEEEEcccccccccccccHHccccccccccccccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEHHHHHHHcccHHHHHHHHHHHHcEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccEEccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEcccccccccccccHHHHHcccccccccccccEccccccEEEEEEEEEccccccccccccccccccccHHHcccccccccEEEEEEcccccccHHHHHHHHHHHHHHccccccccccccccccccHHHcEHccHEEcccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcEEEEccccHHHccccccccccccccccccccccccccccccEEEEEEEcccccccEEEEccccccccccccccccccccccccccHHcccccccccccccccccccccHccccccccHHHHHHHHHHHHHHHHHccccHcccHHHHHHHcccEEEEEccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MGVKVANTCLqwtqriipqspsssQALASAisspsskrrsrsscssdigplvCRYVqgldrsalfgpqlakqphrsrsceyypkpriqhaVRRTCSAsldafdenenetncrdnavnsesesrdsrdgfvdppweedEIIQESIERkansvdlplSLRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANFTvhsmasntslaatpppaaayhEYASTVEVHnqrrhkfdsssikpfsvfssrsgkttsiggnnggggkirpigsgtdgdggidrvdhfrtivpdgasqlssfgttrdaesvsgqvdreeELNLWNSIVDEasqmqvtdesldhetmerfvspvtanieaddyADYFRTELLYQtglaqepndpllLANYAQFLYIVAHDYDRYLNFLS
Flexible Loop (DISEMBL)
MGVKVANTCLQWtqriipqspsssqALASaisspsskrrsrsscssdigpLVCRYVQGLDRSALfgpqlakqphrsrsceyypkpriqhaVRRTCSASLdafdenenetncrdnavnsesesrdsrdgfvdppweEDEIIQesierkansvdlplsLRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMASNTSLAATPPPAAAYHEYASTVEVHNQRrhkfdsssikpfsvfssrsgkttsiggnnggggkirpigsGTDGDGGIDRVDHFRTIVPDgasqlssfgttrdaesvsgqvdreeELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS
Low Complexity Region (SEG)
MGVKVANTCLQWTqriipqspsssqalasaisspsskrrsrsscssDIGPLVCRYVQGLDRSALFGPQLAKQPHRSRSCEYYPKPRIQHAVRRTCSASLDAFDENENETNCRDNAVNSESESRDSRDGFVDPPWEEDEIIQESIERKANSVDLPLSLRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMASNTSLaatpppaaaYHEYASTVEVHNQRRHKFDsssikpfsvfssrsgkttsiggnnggggkirpigsgtdgdggidRVDHFRTIVPDGASQLSSFGTTRDAESVSGQVDREEELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS
Disordered region (IsUnstruct)
*****ANTCLQWTQRI*******************************IGPLVCRYVQGLDRSALFGP*************YY*******************************************************************SVDLPLSLRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMA******************************************************************************VDHFRTIV******************************LWNSIV*******************RFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNF**
Disordered Region (DISOPRED)
***K*ANTCLQWTQR**********************************PLVCRYVQGLD**********************************************N**************************WEEDEIIQ*SIERK**SVDLPLSLRI*******************CSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMASNTS*******************************************************************************************************QVDREEELNLWNSIVDEAS**********HETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYD****FL*
Disordered Region (DISEMBL)
MGVKVANTCLQWTQRIIP***************************SDIGPLVCRYVQGLDRSALFGP**********SCEYYPKPRIQHAVRRTCSASLDAFDENENETNCRD****************VDPPWEEDEIIQESIERKANSVDLPLSLRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMASNTSLAATPPPAAAYHEYASTVEVHNQRRHKFDSSSIKPFSVFSSRSGKTTSIGGNNGGGGKIRPIGSGTDGDGGIDRVDHFRTIVPDGASQLS***************DREEELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS
Disordered Region (DISPRO)
*GVKVANTCLQWTQRI******************************DIGPLVCRYVQGLDRSALFGPQLAKQPHRSRSCEYYPKPRIQHAVRRTCSASLDAFDENENETNCRDNAVNSESESR*SRDGFVDPPWEEDEIIQESIERKANSVDLPLSLRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMASNTSLAATPPPAAAYHEYA************FDSSSIKPFSVFSSRSGKTTSIGG*******************************************************REEELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVKVANTCLQWTQRIIPQSPSSSQALASAISSPSSKRRSRSSCSSDIGPLVCRYVQGLDRSALFGPQLAKQPHRSRSCEYYPKPRIQHAVRRTCSASLDAFDENENETNCRDNAVNSESESRDSRDGFVDPPWEEDEIIQESIERKANSVDLPLSLRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMASNTSLAATPPPAAAYHEYASTVEVHNQRRHKFDSSSIKPFSVFSSRSGKTTSIGGNNGGGGKIRPIGSGTDGDGGIDRVDHFRTIVPDGASQLSSFGTTRDAESVSGQVDREEELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	459
225434642	527	PREDICTED: uncharacterized protein LOC10	0.956	0.833	0.684	1e-160
224054554	545	predicted protein [Populus trichocarpa]	0.984	0.829	0.675	1e-159
224104295	575	predicted protein [Populus trichocarpa]	0.976	0.779	0.628	1e-140
297745926	469	unnamed protein product [Vitis vinifera]	0.834	0.816	0.610	1e-138
449467475	546	PREDICTED: uncharacterized protein LOC10	0.947	0.796	0.563	1e-132
449518503	546	PREDICTED: uncharacterized protein LOC10	0.947	0.796	0.561	1e-132
255569303	546	conserved hypothetical protein [Ricinus	0.954	0.802	0.599	1e-131
449450800	567	PREDICTED: uncharacterized protein LOC10	0.956	0.774	0.536	1e-125
449496587	567	PREDICTED: uncharacterized LOC101211174	0.956	0.774	0.534	1e-125
356566185	532	PREDICTED: uncharacterized protein LOC10	0.941	0.812	0.555	1e-119

>gi|225434642|ref|XP_002279786.1| PREDICTED: uncharacterized protein LOC100253483 [Vitis vinifera]

 Score =  572 bits (1475), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 314/459 (68%), Positives = 356/459 (77%), Gaps = 20/459 (4%)

Query: 1   MGVKVANTCLQWTQRIIPQSPSSSQALASAISSPSSKRRSRSSCSSDIGPLVCRYVQGLD 60
           MGVKVA TCLQW+Q I+  SPSSSQ LASAISSP SKRR+R  C  D G LVCRYV  LD
Sbjct: 1   MGVKVATTCLQWSQPIVSHSPSSSQTLASAISSPPSKRRNR--C--DGGALVCRYVHRLD 56

Query: 61  RSALFGPQLAKQPHRSRSCEYYPKPRIQHAVRRTCSASLDAFDENENETNCRDNAVNSES 120
           RSA FG    K    SRS E  PKPR  H ++R CSA LD+  + E      + A+  + 
Sbjct: 57  RSAFFGIPSTKL-CSSRSFES-PKPR-AHKIKRACSAGLDSLSDEEFSKRIEELALRFQV 113

Query: 121 ESRDSRDGFVDPP-WE-EDEIIQESIERKANSVDLPLSLRIIKRKLQWQDGFREAGESAY 178
              D      +PP W   DEI+  +IERKANSVDLPLSLRIIKRK QWQ+GFREAGESAY
Sbjct: 114 SDEDE-----NPPDWPGRDEIVPANIERKANSVDLPLSLRIIKRKKQWQEGFREAGESAY 168

Query: 179 CSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVRVQREMHASFVWLFQQVFSHTP 238
           CSVKKAFSSMVFIIRELHSFTLQMRE+L Y+DLQGIL RVQ+EMHASFVWLFQQVFSHTP
Sbjct: 169 CSVKKAFSSMVFIIRELHSFTLQMREVLLYQDLQGILDRVQQEMHASFVWLFQQVFSHTP 228

Query: 239 TLMVYVMILLANFTVHSMASNTSLAATPPPA--AAYHEYASTVEVHNQRRHKFDSSSIKP 296
           TLMVYVMILLANFTV+S+A+NT++AA+PPP+  AA  E     +    ++ KFDSS IK 
Sbjct: 229 TLMVYVMILLANFTVYSIANNTAIAASPPPSPHAATIESVLVSDSQQDKQQKFDSSIIKK 288

Query: 297 FSVFSSRSGKTTSIGGNNGGGGKIRPIGSGTDGDGGIDRVDHFRTIVPDGASQLSSFGTT 356
           FSV SS +GKTTSIG N GGGGK+RP  SGTDGDG  DR +  +TI+PDG SQ+ S GTT
Sbjct: 289 FSV-SSTNGKTTSIGNNGGGGGKVRPAASGTDGDGRFDRSEFHQTILPDGVSQI-SIGTT 346

Query: 357 RDAESVSGQVDREEELNLWNSIVDEASQMQVT--DESLDHETMERFVSPVTANIEADDYA 414
           R++ESVSG+V REEE+  WNSIVDEAS+MQ    DESLDHETM+RFVSPV A IEADDYA
Sbjct: 347 RESESVSGEVTREEEVAHWNSIVDEASKMQAALRDESLDHETMQRFVSPVEAKIEADDYA 406

Query: 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDR 453
           DYFR ELLYQ GLA+EPN+PLLLANYAQFLY+VAHDYDR
Sbjct: 407 DYFRAELLYQMGLAREPNNPLLLANYAQFLYLVAHDYDR 445

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054554|ref|XP_002298318.1| predicted protein [Populus trichocarpa] gi|222845576|gb|EEE83123.1| predicted protein [Populus trichocarpa]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 320/474 (67%), Positives = 358/474 (75%), Gaps = 22/474 (4%)

Query: 1   MGVKVANT-CLQWTQRIIPQSPSSSQALASAISSPSSKRRSRSSCSSDIGPLVCRYVQGL 59
           MGVKVA T C QW Q II  SPSSSQALASAI+SPSSKR+ R    +  G LVCRYVQ L
Sbjct: 1   MGVKVATTTCFQWPQPIIHHSPSSSQALASAIASPSSKRQ-RGFDGAGGGMLVCRYVQRL 59

Query: 60  DRSALFGPQLAKQPHRSRSCEYYPKPRIQHAVRRTCSASLDAFDENENETNCRDNAVNSE 119
            R ALFG     +  R+RSCE   KPR Q  +R   SASLDAF + E     +D A    
Sbjct: 60  GRRALFGSPFTTKLQRARSCESQ-KPRGQTTIR-ASSASLDAFSDEEFSKKIQDLA--RR 115

Query: 120 SESRDSRDGFVDPPWEE-----------DEIIQESIERKANSVDLPLSLRIIKRKLQWQD 168
               D  D  V P W E           D+II  SIERKANSVD+PLSLR+IKRK+QWQ+
Sbjct: 116 FRLSDDDDDSVKPQWPEIRQEPPDWSGRDDIIPASIERKANSVDIPLSLRMIKRKMQWQE 175

Query: 169 GFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVRVQREMHASFVW 228
           GFREAGESAYCSVK AFSSMVFIIRELHS +LQMRE LF EDLQGIL RVQ+EMHASFVW
Sbjct: 176 GFREAGESAYCSVKAAFSSMVFIIRELHSHSLQMREFLFTEDLQGILARVQQEMHASFVW 235

Query: 229 LFQQVFSHTPTLMVYVMILLANFTVHSMASNTSLAATPPPA--AAYHEYASTVEVHNQRR 286
           LFQQVFSHTPTLMVYVMILLANFTVHSMA+NT++AA P     AA  E  S VE  +Q+ 
Sbjct: 236 LFQQVFSHTPTLMVYVMILLANFTVHSMANNTAIAAPPNTGSYAATTESVSVVENLDQKN 295

Query: 287 HKFDSSSIKPFSVFSSRSGKTTSIGGNNGGGGKIRPIGSGTDGDGGIDRVDHFRTIVPDG 346
            KF SSS+K FSV SS SGKTTSIGGNNGGGGK+RP+ SGT+GDG  D+   FRTIVPDG
Sbjct: 296 QKFYSSSVKTFSVPSS-SGKTTSIGGNNGGGGKVRPVASGTEGDGWFDQSSQFRTIVPDG 354

Query: 347 ASQLSSFGTTRDAESVSGQVDREEELNLWNSIVDEASQMQ--VTDESLDHETMERFVSPV 404
           ASQLSS GT+R+AESVS QV   EEL+LWNSIVDEAS+MQ  + D SLDHET  RFVSP+
Sbjct: 355 ASQLSSLGTSREAESVSEQVSGAEELSLWNSIVDEASKMQSSLRDVSLDHETTHRFVSPI 414

Query: 405 TANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458
           +A IEADDY DYFRT+LLYQTGL+Q+PN+PLLLANYAQFLYIVAHDYDR  ++ 
Sbjct: 415 SAKIEADDYEDYFRTDLLYQTGLSQDPNNPLLLANYAQFLYIVAHDYDRAEDYF 468

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104295|ref|XP_002313386.1| predicted protein [Populus trichocarpa] gi|222849794|gb|EEE87341.1| predicted protein [Populus trichocarpa]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 313/498 (62%), Positives = 364/498 (73%), Gaps = 50/498 (10%)

Query: 1   MGVKVANT-CLQWTQRIIPQSPSSSQALASAISSPSSKRRSRSSCSSDIGPLVCRYVQGL 59
           MG+KVA T C QW+Q I   SPSSSQ+LASAISSPSSKR+ R   +     L+CR +Q L
Sbjct: 1   MGLKVATTTCFQWSQPITHHSPSSSQSLASAISSPSSKRQRRFDGTGGC-VLLCRCLQRL 59

Query: 60  DRSALFGPQLAKQPHRSRSCEYYPKPRIQHAVRRTCSASLDAFDENENETNCRDNAVN-- 117
           DR  LFG  L K   R+RS E+  K R Q  ++R  SASLDAF + E     ++ A+   
Sbjct: 60  DRRTLFGTPLTK-IQRARSLEF-QKSRGQ-TIKRASSASLDAFSDEEFSKKIQELALRFQ 116

Query: 118 -------------SESES-RDSRDGF------------VDPPWEE-----------DEII 140
                        SESE   DS D              ++PPW E           D+II
Sbjct: 117 LSDDDDDGSDAVDSESEILSDSGDNLGMHDQRQFPLDSMEPPWPEIRQEPPDWSGRDDII 176

Query: 141 QESIERKANSVDLPLSLRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTL 200
             SIERKANSVDLPLSLR+I+RK+QWQ+GFREAGESAYCSVKKAF SMVFIIRELH+++L
Sbjct: 177 PASIERKANSVDLPLSLRMIRRKMQWQEGFREAGESAYCSVKKAFCSMVFIIRELHAYSL 236

Query: 201 QMREILFYEDLQGILVRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMASNT 260
           QMRE LF EDLQGIL RVQ+EMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMA+N 
Sbjct: 237 QMREFLFTEDLQGILARVQKEMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMANNA 296

Query: 261 SLAATPPPA--AAYHEYASTVEVHNQRRHKFDSSSIKPFSVFSSRSGKTTSIGGNNGGGG 318
           +LAA P     AA  E  S VE  +Q+  KFDSSS+K FSV SS SGKTTSIGGNNGGGG
Sbjct: 297 ALAAPPNSGSYAATTESISVVETPDQKNQKFDSSSVKMFSV-SSSSGKTTSIGGNNGGGG 355

Query: 319 KIRPIGSGTDGDGGIDRVDHFRTIVPDGASQLSSFGTTRDAESVSGQVDREEELNLWNSI 378
           K+RP+ SGT+GDG  D+ +  RTIVPDGASQLSS GT+R+AES S QV REEEL+LWNSI
Sbjct: 356 KVRPLASGTEGDGWFDQSNQIRTIVPDGASQLSSLGTSREAESASEQVSREEELSLWNSI 415

Query: 379 VDEASQMQ---VTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPL 435
           V+EAS+MQ   + DESLDHET++RFVSP+ A IEADDYA+YFRT+L YQ GL+Q+PN+PL
Sbjct: 416 VEEASKMQYFPLRDESLDHETIQRFVSPINAKIEADDYAEYFRTDLQYQMGLSQDPNNPL 475

Query: 436 LLANYAQFLYIVAHDYDR 453
           LLANYAQFL +V HDYDR
Sbjct: 476 LLANYAQFLNMVFHDYDR 493

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745926|emb|CBI15982.3| unnamed protein product [Vitis vinifera]

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 279/457 (61%), Positives = 318/457 (69%), Gaps = 74/457 (16%)

Query: 1   MGVKVANTCLQWTQRIIPQSPSSSQALASAISSPSSKRRSRSSCSSDIGPLVCRYVQGLD 60
           MGVKVA TCLQW+Q I+  SPSSSQ LASAISSP SKRR+R     D G LVCRYV  LD
Sbjct: 1   MGVKVATTCLQWSQPIVSHSPSSSQTLASAISSPPSKRRNRC----DGGALVCRYVHRLD 56

Query: 61  RSALFGPQLAKQPHRSRSCEYYPKPRIQHAVRRTCSASLDAFDENENETNCRDNAVNSES 120
           RSA FG    K    SRS E  PKPR  H ++R CSA LD+  + E      + A+  + 
Sbjct: 57  RSAFFGIPSTKL-CSSRSFES-PKPR-AHKIKRACSAGLDSLSDEEFSKRIEELALRFQV 113

Query: 121 ESRDSRDGFVDPP-WE-EDEIIQESIERKANSVDLPLSLRIIKRKLQWQDGFREAGESAY 178
              D      +PP W   DEI+  +IERKANSVDLPLSLRIIKRK QWQ+GFREAGESAY
Sbjct: 114 SDEDE-----NPPDWPGRDEIVPANIERKANSVDLPLSLRIIKRKKQWQEGFREAGESAY 168

Query: 179 CSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVRVQREMHASFVWLFQQVFSHTP 238
           CSVKKAFSSMVFIIRELHSFTLQMRE        GIL RVQ+EMHASFVWLFQQVFSHTP
Sbjct: 169 CSVKKAFSSMVFIIRELHSFTLQMRE--------GILDRVQQEMHASFVWLFQQVFSHTP 220

Query: 239 TLMVYVMILLANFTVHSMASNTSLAATPPPAAAYHEYASTVEVHNQRRHKFDSSSIKPFS 298
           TLMVYVMILLANFTV+S+A+NT++AA+PPP+     +A+T++                  
Sbjct: 221 TLMVYVMILLANFTVYSIANNTAIAASPPPSP----HAATID------------------ 258

Query: 299 VFSSRSGKTTSIGGNNGGGGKIRPIGSGTDGDGGIDRVDHFRTIVPDGASQLSSFGTTRD 358
                                      GTDGDG  DR +  +TI+PDG SQ+ S GTTR+
Sbjct: 259 ---------------------------GTDGDGRFDRSEFHQTILPDGVSQI-SIGTTRE 290

Query: 359 AESVSGQVDREEELNLWNSIVDEASQMQVT--DESLDHETMERFVSPVTANIEADDYADY 416
           +ESVSG+V REEE+  WNSIVDEAS+MQ    DESLDHETM+RFVSPV A IEADDYADY
Sbjct: 291 SESVSGEVTREEEVAHWNSIVDEASKMQAALRDESLDHETMQRFVSPVEAKIEADDYADY 350

Query: 417 FRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDR 453
           FR ELLYQ GLA+EPN+PLLLANYAQFLY+VAHDYDR
Sbjct: 351 FRAELLYQMGLAREPNNPLLLANYAQFLYLVAHDYDR 387

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467475|ref|XP_004151448.1| PREDICTED: uncharacterized protein LOC101203517 [Cucumis sativus]

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 270/479 (56%), Positives = 336/479 (70%), Gaps = 44/479 (9%)

Query: 6   ANTCLQWTQRIIPQSPSSSQALASAISSP-SSKRRSRSSCSSDIGPLVCRYVQGLDRSAL 64
           A TC  W+Q   P  P+S Q L S + SP SSKRR+ +    D G LV R V  L++S L
Sbjct: 3   ATTCFHWSQPFTPHCPASPQTLTSTVLSPCSSKRRNYT----DGGSLVWRCVHRLEQSTL 58

Query: 65  FGPQLAKQPHRSRSCEYYPKPRIQHAVRRTCSASLDAFDENE------------------ 106
           FG    K  HRSRSCE  PK +    ++RTCSASLDAF + E                  
Sbjct: 59  FGSSSTKL-HRSRSCEI-PK-QTSRGIKRTCSASLDAFSDEEFSRRIQELALRFQHSADA 115

Query: 107 NETNCRDNAVNSESESRDSRDGFVDPPWEE-----------DEIIQESIERKANSVDLPL 155
           +ET    ++ ++   + DS   FV+P W E           DE++   IER+ANS DLP+
Sbjct: 116 DETAGSSSSNDASCVNSDSLSEFVEPSWPETGHEPPDWPRPDELVPAMIERRANSFDLPV 175

Query: 156 SLRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGIL 215
           SLR+IK+KLQW++  RE+ ES++CSVKKAFSS+VF+IRELHS+TL++REIL++EDLQ IL
Sbjct: 176 SLRMIKKKLQWEEDIRESTESSHCSVKKAFSSVVFMIRELHSYTLRLREILYFEDLQSIL 235

Query: 216 VRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMASNTSLAATPPPAAAYHEY 275
           VRVQ+E  ASFVWLFQQVFSHTPTLM+ +MILLANFTV+SM +NT+LA+T PP AA    
Sbjct: 236 VRVQKESQASFVWLFQQVFSHTPTLMISIMILLANFTVYSMGNNTALASTSPPPAA---M 292

Query: 276 ASTVEVHNQRRHKFDSSSIKPFSVFSSRSGKTTSIGGNNGGGGKIRPIGSGTDGDGGIDR 335
            S VE H+Q   KFDS++IK FS+ SS SGKTTSIGGNNGGGGK+RPIG G + DG  ++
Sbjct: 293 VSVVESHDQCNSKFDSTTIKTFSI-SSSSGKTTSIGGNNGGGGKVRPIGGGIEDDGQFNQ 351

Query: 336 VDHFRTIVPDGASQLSSFGTTRDAESVSGQVDREEELNLWNSIVDEASQM-QVTDESLDH 394
            D +RTI+PD ASQ+SS+GTT +AESV  +   EEE NLW S+V+EAS+M Q  DE +D 
Sbjct: 352 SDEYRTILPDNASQVSSYGTTPEAESVLNR--EEEETNLWKSVVEEASKMRQWGDEVMDG 409

Query: 395 ETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDR 453
           +     +SPVTANIE DDYA+Y RTELLYQT L QEPN+ LLL NYAQFLY+VAHDYDR
Sbjct: 410 DAFRDLISPVTANIETDDYAEYLRTELLYQTTLLQEPNNTLLLTNYAQFLYLVAHDYDR 468

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518503|ref|XP_004166281.1| PREDICTED: uncharacterized protein LOC101223894 [Cucumis sativus]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 269/479 (56%), Positives = 335/479 (69%), Gaps = 44/479 (9%)

Query: 6   ANTCLQWTQRIIPQSPSSSQALASAISSP-SSKRRSRSSCSSDIGPLVCRYVQGLDRSAL 64
           A TC  W+Q   P  P+S Q L S + SP SSKRR+ +    D G LV R V  L++S L
Sbjct: 3   ATTCFHWSQPFTPHCPASPQTLTSTVLSPCSSKRRNYT----DGGSLVWRCVHRLEQSTL 58

Query: 65  FGPQLAKQPHRSRSCEYYPKPRIQHAVRRTCSASLDAFDENE------------------ 106
           FG    K  HRSRSCE  PK +    ++RTCSASLDAF + E                  
Sbjct: 59  FGSSSTKL-HRSRSCEI-PK-QTSRGIKRTCSASLDAFSDEEFSRRIQELALRFQHSADA 115

Query: 107 NETNCRDNAVNSESESRDSRDGFVDPPWEE-----------DEIIQESIERKANSVDLPL 155
           +ET    ++ ++   + DS   FV+P W E           DE++   IER+ANS DLP+
Sbjct: 116 DETAGSSSSNDASCVNSDSLSEFVEPSWPETGHEPPDWPRPDELVPAMIERRANSFDLPV 175

Query: 156 SLRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGIL 215
           SLR+IK+KLQW++  RE+ ES++CSVKKAFSS+VF+IRELHS+TL++REIL++EDLQ IL
Sbjct: 176 SLRMIKKKLQWEEDIRESTESSHCSVKKAFSSVVFMIRELHSYTLRLREILYFEDLQSIL 235

Query: 216 VRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMASNTSLAATPPPAAAYHEY 275
           VRVQ+E  ASFVWLFQQVFSHTPTLM+ +MILLANFTV+SM +NT+LA+T PP AA    
Sbjct: 236 VRVQKESQASFVWLFQQVFSHTPTLMISIMILLANFTVYSMGNNTALASTSPPPAA---M 292

Query: 276 ASTVEVHNQRRHKFDSSSIKPFSVFSSRSGKTTSIGGNNGGGGKIRPIGSGTDGDGGIDR 335
            S VE H+Q   KFDS++IK FS+ SS SGKTTSIGGNNGGGGK+RPIG G + DG  ++
Sbjct: 293 VSVVESHDQCNSKFDSTTIKTFSI-SSSSGKTTSIGGNNGGGGKVRPIGGGIEDDGQFNQ 351

Query: 336 VDHFRTIVPDGASQLSSFGTTRDAESVSGQVDREEELNLWNSIVDEASQM-QVTDESLDH 394
            D +RTI+PD ASQ+SS+GTT + ESV  +   EEE NLW S+V+EAS+M Q  DE +D 
Sbjct: 352 SDEYRTILPDNASQVSSYGTTPETESVLNR--EEEETNLWKSVVEEASKMRQWGDEVMDG 409

Query: 395 ETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDR 453
           +     +SPVTANIE DDYA+Y RTELLYQT L QEPN+ LLL NYAQFLY+VAHDYDR
Sbjct: 410 DAFRDLISPVTANIETDDYAEYLRTELLYQTTLLQEPNNTLLLTNYAQFLYLVAHDYDR 468

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569303|ref|XP_002525619.1| conserved hypothetical protein [Ricinus communis] gi|223535055|gb|EEF36737.1| conserved hypothetical protein [Ricinus communis]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 287/479 (59%), Positives = 341/479 (71%), Gaps = 41/479 (8%)

Query: 1   MGVKV--ANTCLQWTQRIIPQSPSSSQALASAISSPSSKRRSRSSCSSDIGPLVCRYVQG 58
           MGVKV    TC QW+Q ++P SPS+SQ LASAISSPSSKRR RS  +   G LVCRYVQ 
Sbjct: 1   MGVKVVAGGTCFQWSQPVMPHSPSASQTLASAISSPSSKRRCRSDGT---GTLVCRYVQR 57

Query: 59  LDRSALFGPQLAKQPHRSRSCEY-YPKPRIQHAVRRTCSASLDAFDENE-----NETNCR 112
           +DR +LFG   +  PH  RS  + YPK      ++R CSASLDAF + E      E   R
Sbjct: 58  VDRFSLFGTS-SSTPHLHRSGSFEYPKSTRSDRIKRACSASLDAFSDEEFSKKIQELALR 116

Query: 113 --DNAVNSESESRDSRDGFVDPP-------------WEEDEIIQESIERKANSVDLPLSL 157
             +N V+S++ S ++ D  ++               +  D +    IERKANSV+LPLSL
Sbjct: 117 FQNNEVDSDTHSTNNNDVTIEEEEASSSQNHNERGVFGADSVDWSEIERKANSVELPLSL 176

Query: 158 RIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVR 217
           R+IKRK++WQ+ FRE   SAYCSVKKAFSSMVFIIRELHS+TLQMRE+LF +DLQG+LVR
Sbjct: 177 RMIKRKMRWQEEFRE---SAYCSVKKAFSSMVFIIRELHSYTLQMRELLFTQDLQGVLVR 233

Query: 218 VQREMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMASNTSLAATPPPAAAYHEYAS 277
           VQ+EMHASFVWLFQQVFSHTPTLMVYVMILLANFTV+SM SN ++AA+PPPAA      S
Sbjct: 234 VQKEMHASFVWLFQQVFSHTPTLMVYVMILLANFTVYSMGSNIAIAASPPPAAYATATES 293

Query: 278 TVEVHNQRRHKFDSSSIKPFSV-FSSRSGKTTSIGGNNGGGGKIRPIGSGTDGDGGIDRV 336
            VE+ +Q   KFDSSS+K F V  SS    T+  G N  GGGKIRP+GSGT  DG  D  
Sbjct: 294 -VEIRDQ---KFDSSSVKTFLVSSSSDGKSTSIGGSNGSGGGKIRPVGSGT--DGWFDGS 347

Query: 337 DHFRTIVPDGASQLSSFGTTRDAESVSGQVDREEELNLWNSIVDEASQMQVT--DESLDH 394
           + FRTIVPDGASQLSS G     ESVSGQ  REEE +LWNSIVDEA +MQ +  D SLD 
Sbjct: 348 NQFRTIVPDGASQLSSPGEAE--ESVSGQETREEESSLWNSIVDEAWKMQASLRDGSLDR 405

Query: 395 ETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDR 453
           ET++RFVSP+ A +E DDY+ Y  TEL YQTGL+Q+PN+PLLL NYAQFL +VA DYDR
Sbjct: 406 ETVQRFVSPIKAIVEPDDYSAYLTTELFYQTGLSQDPNNPLLLTNYAQFLCLVAQDYDR 464

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450800|ref|XP_004143150.1| PREDICTED: uncharacterized protein LOC101211174 [Cucumis sativus]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 272/507 (53%), Positives = 340/507 (67%), Gaps = 68/507 (13%)

Query: 1   MGVKVANTCLQWTQRIIPQSPSSSQALASAISSPSSKRRSRSSCSSDIGPLVCRYVQGLD 60
           MGVKVA TCLQW+Q I+  S   SQ LAS +  PSS     +  +   G   C Y   L 
Sbjct: 1   MGVKVATTCLQWSQPIVHHSSCYSQTLASIVPYPSST----TRRNRRNGGGRCVY--SLS 54

Query: 61  RSALFGPQLAKQPHRSRSCEYYPKPRIQHAVRRTCSASL-DAFDENENETNCRDNAVNSE 119
           R  LFG QL K   RSRSC  Y KPRI+  +R  CSA + D F + E     ++ A+  +
Sbjct: 55  RPGLFGIQLTKF-QRSRSCCDY-KPRIR-TIRTACSAHMEDGFSDEEFSKQIQELALRFQ 111

Query: 120 SESRDSRDGF-------------------------------------VDPPW-------- 134
             S  +   F                                      + PW        
Sbjct: 112 VSSDVNSSHFNAVSSDSVSDSSVDHEFNTAECSLQNQIQITPPQLVSTESPWPEIYHEPS 171

Query: 135 ---EEDEIIQESIERKANSVDLPLSLRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFI 191
              +E EII + IERKANSVDLPLSLRI+KRK+QW DG REA ESAYCSVKKAFSSMVF+
Sbjct: 172 EWTQESEIIPDDIERKANSVDLPLSLRILKRKMQWHDGIREARESAYCSVKKAFSSMVFM 231

Query: 192 IRELHSFTLQMREILFYEDLQGILVRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANF 251
           IRELHS++L++REILFYEDLQGIL RV++EMHASFVWLFQQVFSHTPTLMVYVMILLANF
Sbjct: 232 IRELHSYSLKLREILFYEDLQGILNRVEKEMHASFVWLFQQVFSHTPTLMVYVMILLANF 291

Query: 252 TVHSMASNTSLAATPPPAAAYHEYA-STVEVHNQRRHKFDSSSIKPFSVFSSRSGKTTSI 310
           TV+SM +N ++A++  P+ +  + A  + ++ NQ+  KF SS+IK FSV    SGKT SI
Sbjct: 292 TVYSMGNNLAIASSSSPSPSITQTAEESFQIQNQKPQKFHSSTIKTFSV----SGKTNSI 347

Query: 311 -GGNNGGGGKIRPIGSGTDGDGGIDRVDHFRTIVPDGASQLSSFGTTRDAE-SVSGQVDR 368
            GGN GGGGK+RPI SGTDGD G +R  ++ T++PDG SQLSS G + + E S++G + R
Sbjct: 348 GGGNGGGGGKVRPIASGTDGD-GFNRSVNYPTVMPDGTSQLSSIGASAEEETSITGGIIR 406

Query: 369 EEELNLWNSIVDEASQMQ--VTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTG 426
           EEE++LWNSI+ EAS+M+  + +E++D ET+ R VSPV ANIE+D+YA+YFRTELLYQTG
Sbjct: 407 EEEVSLWNSILKEASEMRSAMRNEAIDEETVRRLVSPVIANIESDNYAEYFRTELLYQTG 466

Query: 427 LAQEPNDPLLLANYAQFLYIVAHDYDR 453
           L+Q+PN+PLLL NYAQFL +VAHDYDR
Sbjct: 467 LSQDPNNPLLLTNYAQFLCLVAHDYDR 493

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449496587|ref|XP_004160172.1| PREDICTED: uncharacterized LOC101211174 [Cucumis sativus]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 271/507 (53%), Positives = 341/507 (67%), Gaps = 68/507 (13%)

Query: 1   MGVKVANTCLQWTQRIIPQSPSSSQALASAISSPSSKRRSRSSCSSDIGPLVCRYVQGLD 60
           MGVKVA TCLQW+Q I+  S   SQ LAS +  PSS     +  +   G   C Y   L 
Sbjct: 1   MGVKVATTCLQWSQPIVHHSSCYSQTLASIVPYPSST----TRRNRRDGGGRCVY--SLS 54

Query: 61  RSALFGPQLAKQPHRSRSCEYYPKPRIQHAVRRTCSASLD-AFDENENETNCRDNAVNSE 119
           R  LFG QL K   RSRSC  Y KPRI+  +R  CSA+++  F + E     ++ A+  +
Sbjct: 55  RPGLFGIQLTKF-QRSRSCCDY-KPRIR-TIRTACSANMENGFSDEEFSKQIQELALRFQ 111

Query: 120 SESRDSRDGF-------------------------------------VDPPW-------- 134
             S  +   F                                      + PW        
Sbjct: 112 VSSDVNSSHFNAVTSDSVSDSSVNHEFNTAECSLQNQIQITPPQLVSTESPWPEIYHEPS 171

Query: 135 ---EEDEIIQESIERKANSVDLPLSLRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFI 191
              +E EII + IERKANSVDLPLSLRI+KRK+QW DG REA ESAYCSVKKAFSSMVF+
Sbjct: 172 EWTQESEIIPDDIERKANSVDLPLSLRILKRKMQWHDGIREARESAYCSVKKAFSSMVFM 231

Query: 192 IRELHSFTLQMREILFYEDLQGILVRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANF 251
           IRELHS++L++REILFYEDLQGIL RV++EMHASFVWLFQQVFSHTPTLMVYVMILLANF
Sbjct: 232 IRELHSYSLKLREILFYEDLQGILNRVEKEMHASFVWLFQQVFSHTPTLMVYVMILLANF 291

Query: 252 TVHSMASNTSLAATPPPAAAYHEYA-STVEVHNQRRHKFDSSSIKPFSVFSSRSGKTTSI 310
           TV+SM +N ++A++  P+ +  + A  + ++ NQ+  KF SS+IK FSV    SGKT SI
Sbjct: 292 TVYSMGNNLAIASSSSPSPSITQTAEESFQIQNQKPQKFHSSTIKTFSV----SGKTNSI 347

Query: 311 -GGNNGGGGKIRPIGSGTDGDGGIDRVDHFRTIVPDGASQLSSFGTTRDAE-SVSGQVDR 368
            GGN GGGGK+RPI SGTDGD G +R  ++ T++PDG SQLSS G + + E S++G + R
Sbjct: 348 GGGNGGGGGKVRPIASGTDGD-GFNRSVNYPTVMPDGTSQLSSIGASAEEETSITGGIIR 406

Query: 369 EEELNLWNSIVDEASQMQ--VTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTG 426
           EEE++LWNSI+ EAS+M+  + +E++D ET+ R VSPV ANIE+D+YA+YFRTELLYQTG
Sbjct: 407 EEEVSLWNSILKEASEMRSAMRNEAIDEETVRRLVSPVIANIESDNYAEYFRTELLYQTG 466

Query: 427 LAQEPNDPLLLANYAQFLYIVAHDYDR 453
           L+Q+PN+PLLL NYAQFL +VAHDYDR
Sbjct: 467 LSQDPNNPLLLTNYAQFLCLVAHDYDR 493

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566185|ref|XP_003551315.1| PREDICTED: uncharacterized protein LOC100799508 [Glycine max]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 267/481 (55%), Positives = 329/481 (68%), Gaps = 49/481 (10%)

Query: 1   MGVKVANTCLQWTQRIIPQSPSSSQALASAISSPSSKRRSRSSCSSDIGPLVCRYVQGLD 60
           MG+KV    +Q +Q ++P SPSSS  LASAI SPSS         S    LVCR+V    
Sbjct: 1   MGIKV----MQLSQPVLPHSPSSSHTLASAIFSPSS---------SKTRTLVCRFVH--- 44

Query: 61  RSALFGPQLAKQPHRSRSCEYYPKPRIQHAVRRTCSASLDAFDENENETNCRDNAVN--- 117
           RS+LF     +   R++S E +     +  +RR CSASL+ F + E      D A+    
Sbjct: 45  RSSLFPTTTTRLLRRTKSFEQHALFTRRGNIRRACSASLEPFSDEEFAKKIEDLALKFQL 104

Query: 118 --------SESESRDSRD-----GFVDPPWEEDEIIQESIERKANSVDLPLSLRIIKRKL 164
                   ++ ES D ++      F +     +EII  +IERKANSV+LP SLRIIK+KL
Sbjct: 105 SDDATTNANDLESEDFQEISSTVNFAEEFEPPEEIIPANIERKANSVELPFSLRIIKKKL 164

Query: 165 QWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVRVQREMHA 224
           QW++GFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMRE+LFYEDLQGIL RVQ EMHA
Sbjct: 165 QWKEGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREVLFYEDLQGILERVQNEMHA 224

Query: 225 SFVWLFQQVFSHTPTLMVYVMILLANFTVHSMASNTSLAATPPPAAAYHEYASTVEVHNQ 284
           SFVWLFQQVFSHTPTLMVYVMILLANFTV+SM +N ++AA  PP       ++  E H+Q
Sbjct: 225 SFVWLFQQVFSHTPTLMVYVMILLANFTVYSMGNNAAIAAVAPPPV-----STVTEAHDQ 279

Query: 285 ----RRHKFDSSSIKPFSVFSSRSGKTTS-IGGNNGGGGKIRPIGSGTDGDGGIDRVDHF 339
               R H  DSS+IK FSV    +GK T+ +GG NGGGGK+RP  +GTDGDG  DR  H 
Sbjct: 280 RGHIRGHNIDSSAIKTFSV---SNGKITAYVGGGNGGGGKVRPAANGTDGDGRFDRSRH- 335

Query: 340 RTIVPDGASQLSSFGTTRDAESVSGQVDREEELNLWNSIVDEASQMQVT--DESLDHETM 397
            T+  DG +   ++ T    ESVSGQ   EEE NLWN++V+EAS+M+V+   + LD + M
Sbjct: 336 GTVFSDGGASTQAYKTGEKTESVSGQE-EEEEENLWNAMVEEASRMEVSWRGKDLDSDVM 394

Query: 398 ERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNF 457
           +RFVSPV A+IE+DDYA+Y RTEL+YQTGL+Q+PN+ LLLANYAQFLY+VAHDYDR   F
Sbjct: 395 KRFVSPVMASIESDDYAEYLRTELVYQTGLSQDPNNTLLLANYAQFLYLVAHDYDRAEEF 454

Query: 458 L 458
            
Sbjct: 455 F 455

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	459
TAIR|locus:2060669	536	AT2G29670 [Arabidopsis thalian	0.623	0.533	0.471	8e-91
TAIR|locus:2025067	552	AT1G07280 "AT1G07280" [Arabido	0.400	0.333	0.570	1.2e-77
TAIR|locus:2075616	515	AT3G47080 [Arabidopsis thalian	0.326	0.291	0.526	1.3e-72

TAIR|locus:2060669 AT2G29670 [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 8.0e-91, Sum P(2) = 8.0e-91
 Identities = 141/299 (47%), Positives = 172/299 (57%)

Query:     1 MGVKVAN--TCLQWTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIGPLVCRYV-Q 57
             MGVKVA+  T LQWT                                     L CR+V Q
Sbjct:     1 MGVKVASSSTFLQWTTQPIIHQSSSPSQTLASGTITSPSKRRSTVHDGRF--LSCRFVTQ 58

Query:    58 GLDRSALFGPQLAKQPHRSRSCEYYP------KPRIQHAVRRTCSASLDAFDENENETNC 111
              L+RSALFG    K  HR +SCE +       +P    + RR  SA+LD F + E     
Sbjct:    59 RLNRSALFGTPSTKL-HRPKSCELWKSSSSSSRPIKTQSFRRVYSANLDPFSDEEFSKKI 117

Query:   112 RDNAVNSESESRDSRDGFVDPPWEEDEIIQESIERKANSVDLPLSLRIIKRKLQWQDGFR 171
             ++  +       D  +  ++PPW E  +   SIE KANSVDLPLSLRIIK+K QW++G +
Sbjct:   118 QELTLRFNIPHHDDDENSIEPPWNE-MVHLSSIEMKANSVDLPLSLRIIKKKRQWEEGVK 176

Query:   172 EAGESAYCSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVRVQREMHASFVWLFQ 231
             +AGESA CS+ KAFSSMVF+IREL SFTL MREILFYEDLQ IL+RV+ EM  SFVWLFQ
Sbjct:   177 QAGESACCSMNKAFSSMVFMIRELQSFTLHMREILFYEDLQEILLRVREEMQQSFVWLFQ 236

Query:   232 QVFSHTPTLMVYVMILLANFTVHSMASNTSLXXXXXXXXXYHEYASTVEVHNQRRHKFD 290
             QVFS TPTLMVYVMILLANFTV+S+ +N+S               +TV    +   KFD
Sbjct:   237 QVFSATPTLMVYVMILLANFTVYSIGNNSSALAAVAPLPPTITELTTVSETEETNVKFD 295

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2025067 AT1G07280 "AT1G07280" [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
 Identities = 113/198 (57%), Positives = 137/198 (69%)

Query:   105 NENETNCRDNAVNSESESRD---SRDGF----VDPPWEEDEIIQES-IERKANSVDLPLS 156
             NE E N  D  ++  +   D   S + F    ++PPW E  ++Q S IERKANSVDLPLS
Sbjct:   127 NEEEDNESDTRIDDYTRKMDIVGSHNNFRSDSMEPPWPE--MVQMSNIERKANSVDLPLS 184

Query:   157 LRIIKRKLQWQDG-FREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGIL 215
             LRIIKRKLQ ++G   + GESA CSVKKAFSSMVF+IREL SFTL MRE+L +EDLQGIL
Sbjct:   185 LRIIKRKLQMEEGVLNQVGESACCSVKKAFSSMVFMIRELQSFTLHMRELLLFEDLQGIL 244

Query:   216 VRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMASNTSLXXXXXXXXXYH-E 274
              RV++EM ASFVWLFQQVFS TPTLMV VMILLANFTV+S+ SN++L             
Sbjct:   245 HRVRKEMQASFVWLFQQVFSATPTLMVSVMILLANFTVYSIESNSALAAAVSPPTTLSFS 304

Query:   275 YASTVEVHN--QRRHKFD 290
             + +T E+    +   KFD
Sbjct:   305 FETTAEISETQETNQKFD 322

GO:0008150 "biological_process" evidence=ND

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

TAIR|locus:2075616 AT3G47080 [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 1.3e-72, Sum P(3) = 1.3e-72
 Identities = 91/173 (52%), Positives = 119/173 (68%)

Query:   100 DAFDENENETNCRDNAVNSESESRDSRDGFV-------------DPPWEEDEIIQESIER 146
             +A DE E E   +  AV+++++S + R G +             + PW E  +   SIER
Sbjct:   127 NAGDEEEEENKQKSEAVDNDNDSNNHRFGSLKLLQESVPGLASLEAPWAE-MVNHSSIER 185

Query:   147 KANSVDLPLSLRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREIL 206
             KANSVDLPLSLRIIKRKLQ ++  ++A  + YCS+ +AFSSMVF+I ELHSF LQ R   
Sbjct:   186 KANSVDLPLSLRIIKRKLQ-EEALKKASATTYCSINRAFSSMVFMIEELHSFALQTRV-- 242

Query:   207 FYEDLQGILVRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMASN 259
                   G+L +V++EMHAS +W+FQ+VFS TPTLMVYVMILLAN+TVHS+ASN
Sbjct:   243 ------GVLKQVKKEMHASLLWIFQRVFSQTPTLMVYVMILLANYTVHSVASN 289

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_I000643 hypothetical protein (545 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	459
PF13431	34	TPR_17: Tetratricopeptide repeat	97.61
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.58
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.55
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.34
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	95.8
PF13371	73	TPR_9: Tetratricopeptide repeat	95.22
PRK14720	906	transcript cleavage factor/unknown domain fusion p	95.03
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	93.83
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	93.64
PF13428	44	TPR_14: Tetratricopeptide repeat	93.48
TIGR02552	135	LcrH_SycD type III secretion low calcium response	92.88
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	92.32
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	92.01
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	91.98
TIGR02552	135	LcrH_SycD type III secretion low calcium response	91.78
PRK10370	198	formate-dependent nitrite reductase complex subuni	91.28
PRK15359	144	type III secretion system chaperone protein SscB;	91.18
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	90.99
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	90.29
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	90.13
PRK12370	553	invasion protein regulator; Provisional	90.06
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	89.72
PRK10370	198	formate-dependent nitrite reductase complex subuni	89.65
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	89.58
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	89.25
PRK15359	144	type III secretion system chaperone protein SscB;	89.07
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	88.66
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	88.36
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	86.19
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	86.0
PRK12370	553	invasion protein regulator; Provisional	85.48
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	85.29
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	84.19
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	83.73
PRK11189	296	lipoprotein NlpI; Provisional	83.56
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	83.45
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	83.37
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	82.97
PRK11189	296	lipoprotein NlpI; Provisional	82.4
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	81.58
PRK11788	389	tetratricopeptide repeat protein; Provisional	81.25
KOG1126	638	consensus DNA-binding cell division cycle control	80.24
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	80.16
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	80.08

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.61  E-value=4.9e-05  Score=52.96  Aligned_cols=34  Identities=21%  Similarity=0.398  Sum_probs=30.9

Q ss_pred             HHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhc
Q 012648          422 LYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLN  456 (459)
Q Consensus       422 ~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEe  456 (459)
                      .|+|+|+.||+|+..+-|||.+|+. .||+++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~-~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLN-QGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHH-CcCHHhhcC
Confidence            4999999999999999999998865 799999975

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.58  E-value=0.0021  Score=47.91  Aligned_cols=47  Identities=15%  Similarity=0.269  Sum_probs=41.3

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      -.+|+.+..+|+++|+.||+|+.++-|.|.-.+...+++++|.++|+
T Consensus        16 ~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~   62 (69)
T PF13414_consen   16 QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFE   62 (69)
T ss_dssp             TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence            35788999999999999999999999999987775448999998873

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.55  E-value=0.0032  Score=46.68  Aligned_cols=45  Identities=24%  Similarity=0.300  Sum_probs=40.1

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      ..+|+.+..+|++++..+|+|+-+.-++|+.+.. .+++++|++++
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l   48 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQYDEAEELL   48 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            3578899999999999999999999999999977 69999999876

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.34  E-value=0.0052  Score=45.60  Aligned_cols=46  Identities=24%  Similarity=0.434  Sum_probs=41.1

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      ..+|+.+...|+++|..+|+|+..+-++|..++ .+++++.|.++|+
T Consensus        10 ~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~   55 (65)
T PF13432_consen   10 QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYE   55 (65)
T ss_dssp             CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence            457899999999999999999999999999997 5899999999873

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=95.80  E-value=0.0062  Score=60.33  Aligned_cols=45  Identities=20%  Similarity=0.305  Sum_probs=39.1

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+.+.++++|++||..+|+|.-+|-||+-||+. ++-++.|-.||+
T Consensus        83 Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~-qg~~~eA~q~F~  127 (250)
T COG3063          83 GENDLADESYRKALSLAPNNGDVLNNYGAFLCA-QGRPEEAMQQFE  127 (250)
T ss_pred             CChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-CCChHHHHHHHH
Confidence            456779999999999999999999999999998 558888877763

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.22  E-value=0.022  Score=42.76  Aligned_cols=44  Identities=27%  Similarity=0.408  Sum_probs=38.9

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+|..+..+++++|..+|+++.++.+||.+++. .++++.|.++|
T Consensus         9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l   52 (73)
T PF13371_consen    9 EDYEEALEVLERALELDPDDPELWLQRARCLFQ-LGRYEEALEDL   52 (73)
T ss_pred             CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-hccHHHHHHHH
Confidence            467889999999999999999999999999977 67888887765

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=95.03  E-value=0.019  Score=65.32  Aligned_cols=44  Identities=9%  Similarity=0.204  Sum_probs=40.8

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      ..++++...|+++|..||+|+..|.|||-+|-+.  |+++|++||+
T Consensus       130 g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA~~m~~  173 (906)
T PRK14720        130 NENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKAITYLK  173 (906)
T ss_pred             CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHHHHHHH
Confidence            6678899999999999999999999999999887  9999999984

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=93.83  E-value=0.076  Score=44.72  Aligned_cols=45  Identities=22%  Similarity=0.423  Sum_probs=37.8

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|+++++.+|+++..+.|++.++.. .+++++|+++|+
T Consensus        79 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~  123 (234)
T TIGR02521        79 GELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ-QGKYEQAMQQFE  123 (234)
T ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cccHHHHHHHHH
Confidence            466788999999999999999999999988754 788999988763

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=93.64  E-value=0.12  Score=35.96  Aligned_cols=44  Identities=18%  Similarity=0.256  Sum_probs=33.1

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|++++..+|.++..+.++|..+.. .+|+++|.++|
T Consensus        48 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~   91 (100)
T cd00189          48 GKYEEALEDYEKALELDPDNAKAYYNLGLAYYK-LGKYEEALEAY   91 (100)
T ss_pred             HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-HHhHHHHHHHH
Confidence            456677788888888888888777788876654 57788887765

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=93.48  E-value=0.081  Score=37.77  Aligned_cols=30  Identities=30%  Similarity=0.347  Sum_probs=27.5

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHH
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQ  442 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAq  442 (459)
                      ..++++++..|+++|+.+|+|+..+.+||+
T Consensus        14 ~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen   14 LGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             cCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            467889999999999999999999999986

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=92.88  E-value=0.14  Score=42.14  Aligned_cols=44  Identities=23%  Similarity=0.280  Sum_probs=38.6

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|++++..+|.|+-++-|+|..+ ...+|+++|..+|
T Consensus        65 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~  108 (135)
T TIGR02552        65 KEYEEAIDAYALAAALDPDDPRPYFHAAECL-LALGEPESALKAL  108 (135)
T ss_pred             HHHHHHHHHHHHHHhcCCCChHHHHHHHHHH-HHcCCHHHHHHHH
Confidence            5678899999999999999999999999855 5578999998876

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=92.32  E-value=0.18  Score=48.62  Aligned_cols=42  Identities=26%  Similarity=0.471  Sum_probs=35.7

Q ss_pred             hhhhHHHHHHHhhh-----cCCCChHhHh---HHHHHHHHHhhhHHHhhc
Q 012648          415 DYFRTELLYQTGLA-----QEPNDPLLLA---NYAQFLYIVAHDYDRYLN  456 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~-----~dP~N~LlL~---NYAqFL~~V~~D~drAEe  456 (459)
                      -..++...|++|++     ..|.||+-|+   ||+-|+|++.+|.++|-+
T Consensus       141 ~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~  190 (236)
T PF00244_consen  141 AAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIE  190 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHH
T ss_pred             HHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            34678899999886     5899999988   999999999999999965

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=92.01  E-value=0.14  Score=47.97  Aligned_cols=44  Identities=30%  Similarity=0.353  Sum_probs=27.9

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      ..+..+-.+|++++..+|+||.++.+||..|.+ .|..++|.+++
T Consensus       228 g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~-~g~~~~A~~~~  271 (280)
T PF13429_consen  228 GRYEEALEYLEKALKLNPDDPLWLLAYADALEQ-AGRKDEALRLR  271 (280)
T ss_dssp             T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------
T ss_pred             ccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence            467788999999999999999999999999965 78899998876

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=91.98  E-value=0.2  Score=42.23  Aligned_cols=44  Identities=23%  Similarity=0.440  Sum_probs=32.7

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|++++..+|+++..+.++|+.++. .+|+++|.++|
T Consensus       149 g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~  192 (234)
T TIGR02521       149 GDFDKAEKYLTRALQIDPQRPESLLELAELYYL-RGQYKDARAYL  192 (234)
T ss_pred             CCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            456677788888888888887777777777655 67778777765

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=91.78  E-value=0.29  Score=40.30  Aligned_cols=44  Identities=16%  Similarity=0.208  Sum_probs=39.0

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      ..+..+..+|++++..+|+|+-++.|.|++++. .+|+++|.++|
T Consensus        31 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~   74 (135)
T TIGR02552        31 GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-LKEYEEAIDAY   74 (135)
T ss_pred             ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            456778899999999999999999999999976 48899999876

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=91.28  E-value=0.26  Score=45.69  Aligned_cols=41  Identities=20%  Similarity=0.259  Sum_probs=22.9

Q ss_pred             hhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          417 FRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       417 ~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      +.+...|++++..||+|+-.+.|.|.-+++ .+|+++|..+|
T Consensus       127 ~~A~~~l~~al~~dP~~~~al~~LA~~~~~-~g~~~~Ai~~~  167 (198)
T PRK10370        127 PQTREMIDKALALDANEVTALMLLASDAFM-QADYAQAIELW  167 (198)
T ss_pred             HHHHHHHHHHHHhCCCChhHHHHHHHHHHH-cCCHHHHHHHH
Confidence            455555555555555555555555544433 55666666554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=91.18  E-value=0.29  Score=42.79  Aligned_cols=44  Identities=11%  Similarity=0.098  Sum_probs=35.5

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .++..+...|++++..+|+|+-.+-|.|.-|.. .|+++.|.++|
T Consensus        72 g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~-~g~~~eAi~~~  115 (144)
T PRK15359         72 KEYTTAINFYGHALMLDASHPEPVYQTGVCLKM-MGEPGLAREAF  115 (144)
T ss_pred             hhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            456778888888888888888888888887765 58888888776

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=90.99  E-value=0.5  Score=32.84  Aligned_cols=44  Identities=23%  Similarity=0.307  Sum_probs=38.6

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      ..+..+..+|++++..+|+++.++.++|..+.. .++++.|.++|
T Consensus        14 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~   57 (100)
T cd00189          14 GDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDY   57 (100)
T ss_pred             hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            467788999999999999999999999998876 58899999887

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=90.29  E-value=0.32  Score=46.19  Aligned_cols=43  Identities=14%  Similarity=0.166  Sum_probs=20.8

Q ss_pred             hhhhHHHHHHHhhhcCCCChHhH-h---HHHHHHHHHhhhHHHhhccc
Q 012648          415 DYFRTELLYQTGLAQEPNDPLLL-A---NYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~~dP~N~LlL-~---NYAqFL~~V~~D~drAEeYy  458 (459)
                      +++.+..+|++++..+|.++.+. .   +.|. ++.-+||+++|.++|
T Consensus       163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~-~~~~~G~~~~A~~~~  209 (355)
T cd05804         163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL-FYLERGDYEAALAIY  209 (355)
T ss_pred             CHHHHHHHHHhhhhccCCCcchhHHHHHHHHH-HHHHCCCHHHHHHHH
Confidence            34455555666665555433221 1   2333 234456666665554

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=90.13  E-value=0.31  Score=38.20  Aligned_cols=46  Identities=24%  Similarity=0.406  Sum_probs=37.8

Q ss_pred             cchhhhhHHHHHHHhhhcCCC--ChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          412 DYADYFRTELLYQTGLAQEPN--DPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       412 d~~~~~rtE~~Yk~~I~~dP~--N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      |...|+.+..+|+++++.+|.  |+.++-+.|+=++. .++|++|.+++
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~   48 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELL   48 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            356789999999999999995  57777778988877 78999998876

>PRK12370 invasion protein regulator; Provisional

Probab=90.06  E-value=0.3  Score=51.42  Aligned_cols=43  Identities=19%  Similarity=0.304  Sum_probs=24.5

Q ss_pred             hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      +++.+..+|+++|+.+|+|+..+.++|..+.. .+++++|.++|
T Consensus       353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~G~~~eAi~~~  395 (553)
T PRK12370        353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFM-AGQLEEALQTI  395 (553)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            34555666666666666666666666555433 45566665554

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=89.72  E-value=0.41  Score=48.16  Aligned_cols=43  Identities=7%  Similarity=0.021  Sum_probs=24.5

Q ss_pred             hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .|..+..+|+++|..+|+|+..+-+.|..++. .+||+.|.++|
T Consensus        51 ~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-lg~~~eA~~~~   93 (356)
T PLN03088         51 NFTEAVADANKAIELDPSLAKAYLRKGTACMK-LEEYQTAKAAL   93 (356)
T ss_pred             CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-hCCHHHHHHHH
Confidence            34455555666666666666666666554443 45666665554

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=89.65  E-value=0.37  Score=44.66  Aligned_cols=46  Identities=24%  Similarity=0.280  Sum_probs=39.6

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhh--HHHhhccc
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHD--YDRYLNFL  458 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D--~drAEeYy  458 (459)
                      -.+++.+...|++++..+|+|+-++.|||.-|+.-.++  +++|.+.|
T Consensus        86 ~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l  133 (198)
T PRK10370         86 RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMI  133 (198)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            46788999999999999999999999999988766666  58887765

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=89.58  E-value=0.28  Score=49.01  Aligned_cols=45  Identities=24%  Similarity=0.352  Sum_probs=40.6

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      ...+++++||+|+|+.||+||+.+.-=|+-+|+ +|||-.|--||+
T Consensus       153 gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~-~~~y~~Ar~~~~  197 (250)
T COG3063         153 GQFDQAEEYLKRALELDPQFPPALLELARLHYK-AGDYAPARLYLE  197 (250)
T ss_pred             CCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh-cccchHHHHHHH
Confidence            447889999999999999999999999999988 899999987763

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=89.25  E-value=0.65  Score=29.35  Aligned_cols=31  Identities=29%  Similarity=0.415  Sum_probs=27.7

Q ss_pred             hhhhHHHHHHHhhhcCCCChHhHhHHHHHHH
Q 012648          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLY  445 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~  445 (459)
                      +.+++...|+++|...|+++-+.-.|++|+.
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~   32 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYAEFEE   32 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence            3567888999999999999999999999974

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=89.07  E-value=0.63  Score=40.72  Aligned_cols=47  Identities=17%  Similarity=0.186  Sum_probs=41.1

Q ss_pred             cchhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       412 d~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .-..++.+..+|++++..+|.|+-.+.|.|.-+.. .++++.|.++|.
T Consensus        36 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~   82 (144)
T PRK15359         36 QEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYG   82 (144)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence            34567789999999999999999999999998755 899999998873

>smart00101 14_3_3 14-3-3 homologues

Probab=88.66  E-value=0.64  Score=45.80  Aligned_cols=41  Identities=27%  Similarity=0.437  Sum_probs=35.2

Q ss_pred             hhhHHHHHHHhhh-----cCCCChHhHh---HHHHHHHHHhhhHHHhhc
Q 012648          416 YFRTELLYQTGLA-----QEPNDPLLLA---NYAQFLYIVAHDYDRYLN  456 (459)
Q Consensus       416 ~~rtE~~Yk~~I~-----~dP~N~LlL~---NYAqFL~~V~~D~drAEe  456 (459)
                      -+++...|+.|++     ..|.||+-|+   ||+-|+|++.+|.++|-+
T Consensus       144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~  192 (244)
T smart00101      144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACN  192 (244)
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            4578899999986     4599999886   999999999999999864

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=88.36  E-value=0.64  Score=36.52  Aligned_cols=44  Identities=16%  Similarity=0.141  Sum_probs=35.5

Q ss_pred             hhhhhHHHHHHHhhhcCCCC---hHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPND---PLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N---~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|++++..+|++   +..+-+.|..+.. .+|++.|..+|
T Consensus        53 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~   99 (119)
T TIGR02795        53 GKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE-LGDKEKAKATL   99 (119)
T ss_pred             ccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH-hCChHHHHHHH
Confidence            45777899999999999987   5567888887765 78888888876

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=86.19  E-value=0.77  Score=46.81  Aligned_cols=43  Identities=14%  Similarity=0.033  Sum_probs=26.4

Q ss_pred             hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .++.+..+|+++|+.+|+|+.++-|||+.|+. .++++.|+++|
T Consensus       852 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~  894 (899)
T TIGR02917       852 EADRALPLLRKAVNIAPEAAAIRYHLALALLA-TGRKAEARKEL  894 (899)
T ss_pred             CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            34556666666666666666666666665544 45566666654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=86.00  E-value=1.1  Score=35.29  Aligned_cols=44  Identities=16%  Similarity=0.141  Sum_probs=26.1

Q ss_pred             hhhhhHHHHHHHhhhcCCCCh---HhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDP---LLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~---LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      ..++.+..+|++++..+|+++   ..+-++|..++. .+|+++|.++|
T Consensus        16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~   62 (119)
T TIGR02795        16 GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAF   62 (119)
T ss_pred             CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHH
Confidence            355666666677766666663   344555555544 55666666665

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK12370 invasion protein regulator; Provisional

Probab=85.48  E-value=0.93  Score=47.80  Aligned_cols=45  Identities=9%  Similarity=0.044  Sum_probs=39.4

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .++..+..+|+++|+.||+|+..+.++|..+ ...+|+++|+++|+
T Consensus       318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~-~~~g~~~~A~~~~~  362 (553)
T PRK12370        318 NAMIKAKEHAIKATELDHNNPQALGLLGLIN-TIHSEYIVGSLLFK  362 (553)
T ss_pred             hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHccCHHHHHHHHH
Confidence            4578999999999999999999999998765 45889999999874

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=85.29  E-value=0.89  Score=48.00  Aligned_cols=45  Identities=16%  Similarity=0.204  Sum_probs=36.5

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|+++|+.+|+|+.++.|.|+.++ ..+|++.|.++|+
T Consensus       379 g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~  423 (615)
T TIGR00990       379 GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQ  423 (615)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence            46777888888999999999988888888664 4788888888773

>TIGR00540 hemY_coli hemY protein

Probab=84.19  E-value=1.2  Score=45.08  Aligned_cols=42  Identities=12%  Similarity=0.121  Sum_probs=37.8

Q ss_pred             hhHHHHHHHhhhcCCCCh--HhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          417 FRTELLYQTGLAQEPNDP--LLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       417 ~rtE~~Yk~~I~~dP~N~--LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .....+.++++..+|+||  -++-.||+.++. .+++++|.+||+
T Consensus       316 ~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~-~~~~~~A~~~le  359 (409)
T TIGR00540       316 EKLEKLIEKQAKNVDDKPKCCINRALGQLLMK-HGEFIEAADAFK  359 (409)
T ss_pred             HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH-cccHHHHHHHHH
Confidence            567889999999999999  999999999965 889999999985

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=83.73  E-value=0.74  Score=43.23  Aligned_cols=44  Identities=25%  Similarity=0.243  Sum_probs=33.9

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcc
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNF  457 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeY  457 (459)
                      ..+.+.+...|+++|+.+|+|+-++.+|+.+|-+ .+++++|.+.
T Consensus       159 ~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-~~~~~~~~~~  202 (280)
T PF13429_consen  159 LGDPDKALRDYRKALELDPDDPDARNALAWLLID-MGDYDEAREA  202 (280)
T ss_dssp             CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCChHHHHHH
Confidence            4567889999999999999999999999988854 5566665543

>PRK11189 lipoprotein NlpI; Provisional

Probab=83.56  E-value=1.3  Score=42.98  Aligned_cols=43  Identities=16%  Similarity=0.171  Sum_probs=22.6

Q ss_pred             hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      +++.+...|+++|+.+|+|+-.+.|.+..++. .++++.|.++|
T Consensus       113 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~eA~~~~  155 (296)
T PRK11189        113 NFDAAYEAFDSVLELDPTYNYAYLNRGIALYY-GGRYELAQDDL  155 (296)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            44455555555555555555555555555443 34555554443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=83.45  E-value=1.3  Score=44.67  Aligned_cols=45  Identities=20%  Similarity=0.197  Sum_probs=38.0

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      ..+|..+..+|+++|+.+|+|+.++.|+|+.+.. .++++.|..+|
T Consensus        15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~-~g~~~eAl~~~   59 (356)
T PLN03088         15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIK-LGNFTEAVADA   59 (356)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            3577788999999999999999999999988755 68888888776

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=83.37  E-value=1.3  Score=39.10  Aligned_cols=46  Identities=20%  Similarity=0.201  Sum_probs=35.8

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHh------hhHHHhhccc
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVA------HDYDRYLNFL  458 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~------~D~drAEeYy  458 (459)
                      -..++.+..+|+++|..+|+++-.+.|++..+....      ++++.|+.+|
T Consensus        85 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~  136 (172)
T PRK02603         85 NGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALF  136 (172)
T ss_pred             cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHH
Confidence            356788999999999999999999999998886643      3455554443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=82.97  E-value=0.81  Score=34.94  Aligned_cols=46  Identities=17%  Similarity=0.247  Sum_probs=33.4

Q ss_pred             chhhhhHHHHHHHhhhc----CCCC---hHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQ----EPND---PLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~----dP~N---~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      -.+|+++..+|+++|..    .+.+   +..+.|.|... .-.+|+++|++||+
T Consensus        18 ~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~-~~~g~~~~A~~~~~   70 (78)
T PF13424_consen   18 LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECY-YRLGDYEEALEYYQ   70 (78)
T ss_dssp             TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH-HHTTHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence            35788999999999954    2233   44677777765 55899999999973

...

>PRK11189 lipoprotein NlpI; Provisional

Probab=82.40  E-value=1.8  Score=42.03  Aligned_cols=44  Identities=14%  Similarity=0.092  Sum_probs=37.7

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      ..+..+...|+++|+.+|+|+..+-|.|..+ ...+|++.|.+.|
T Consensus        78 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~-~~~g~~~~A~~~~  121 (296)
T PRK11189         78 GLRALARNDFSQALALRPDMADAYNYLGIYL-TQAGNFDAAYEAF  121 (296)
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHCCCHHHHHHHH
Confidence            4566778889999999999999999999755 6689999999876

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=81.58  E-value=1.5  Score=48.90  Aligned_cols=47  Identities=17%  Similarity=0.065  Sum_probs=41.3

Q ss_pred             ccchhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          411 DDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       411 dd~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      ..-..|+.++++|++++..+|+++-.|-+||.-|+. +|+.+.|...|
T Consensus       165 ~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~-~G~~~~A~~~~  211 (694)
T PRK15179        165 DEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR-RGALWRARDVL  211 (694)
T ss_pred             HHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            456788999999999999999999999999999965 89999988766

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=81.25  E-value=1.7  Score=41.78  Aligned_cols=44  Identities=14%  Similarity=0.102  Sum_probs=31.9

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|++|++.+|+|+-.+.+.|.++. ..+++++|.++|
T Consensus        49 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~   92 (389)
T PRK11788         49 EQPDKAIDLFIEMLKVDPETVELHLALGNLFR-RRGEVDRAIRIH   92 (389)
T ss_pred             CChHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HcCcHHHHHHHH
Confidence            34556888888888888888877777777553 467777777665

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=80.24  E-value=1.4  Score=49.09  Aligned_cols=44  Identities=14%  Similarity=0.259  Sum_probs=38.9

Q ss_pred             hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .++.+|-+||+|++.||.|..++.=+.+++.+ .++.|+|..+|+
T Consensus       504 k~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~-~k~~d~AL~~~~  547 (638)
T KOG1126|consen  504 KLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ-LKRKDKALQLYE  547 (638)
T ss_pred             hhhHHHHHHHhhhcCCccchhHHhhhhHHHHH-hhhhhHHHHHHH
Confidence            45668999999999999999999999999976 788999988874

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=80.16  E-value=1.7  Score=50.13  Aligned_cols=44  Identities=18%  Similarity=0.129  Sum_probs=34.0

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|+++|+.+|+|+.++.|++.+|.+ .++++.|.++|
T Consensus       623 G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G~~eeAi~~l  666 (987)
T PRK09782        623 HNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SGDIAQSREML  666 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            456677788888888888888888888887766 56778777765

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=80.08  E-value=1.9  Score=45.67  Aligned_cols=43  Identities=12%  Similarity=0.227  Sum_probs=30.8

Q ss_pred             hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      +++.+..+|++++..+|+++.++.+|+..+.. .+|+++|.++|
T Consensus       448 ~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~-~g~~~~A~~~~  490 (615)
T TIGR00990       448 SIASSMATFRRCKKNFPEAPDVYNYYGELLLD-QNKFDEAIEKF  490 (615)
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-ccCHHHHHHHH
Confidence            46667777777777777777777777776644 66777777766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	459
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 6e-06
 Identities = 55/451 (12%), Positives = 129/451 (28%), Gaps = 132/451 (29%)

Query: 51  LVCRYVQGLDRSALFGPQLAKQPHRSRSCEYYPKPRIQHAVRRTC---------SASLDA 101
           +   +    D S+           R  S +   +  ++      C         + + +A
Sbjct: 209 IDPNWTSRSDHSS-------NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 102 FDENENETNC------RD----NAVNSESESR----DSRDGFVDPPWEEDEIIQESIERK 147
           F+      +C      R     + +++ + +                E   ++ + ++ +
Sbjct: 262 FN-----LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EVKSLLLKYLDCR 314

Query: 148 ANSVDL--------PLSLRIIKRKLQ-----WQDGFREAGESAYCSVKKAFSSMVFIIRE 194
               DL        P  L II   ++     W D ++        ++ ++       +  
Sbjct: 315 PQ--DLPREVLTTNPRRLSIIAESIRDGLATW-DNWKHVNCDKLTTIIESS------LNV 365

Query: 195 LHSFTLQMREILFYEDLQGIL---VRVQREMHASFVWLFQQVFSHTPTLMVYVMI--LLA 249
           L     +      ++ L  +      +   +  S +W    V      ++V  +    L 
Sbjct: 366 LEPAEYRKM----FDRL-SVFPPSAHIPTIL-LSLIW--FDVIKSDVMVVVNKLHKYSLV 417

Query: 250 N-------FTVHSMASNTSLAATPPPAAAYHEYASTVEVHNQRRHKFDSSSIKPFSV--- 299
                    ++ S+     L        A H   S V+ +N  +  FDS  + P  +   
Sbjct: 418 EKQPKESTISIPSIYL--ELKVKLENEYALH--RSIVDHYNIPK-TFDSDDLIPPYLDQY 472

Query: 300 -FSSRSGKTTSIGGNNGGGGKIRPIGSGTDGDGGIDRVDHFRTIVPDGA---SQLSSFGT 355
            +S                     IG         +R+  FR +  D      ++    T
Sbjct: 473 FYSH--------------------IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512

Query: 356 TRDAESVSGQVDREEELNLWNSIVDEASQMQVTDESLDHE----TMERFVSPVTANIEAD 411
             +A      ++  ++L  +           + D    +E     +  F+  +  N+   
Sbjct: 513 AWNA--SGSILNTLQQLKFYKP--------YICDNDPKYERLVNAILDFLPKIEENLICS 562

Query: 412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQ 442
            Y D      L +  L    ++ +    + Q
Sbjct: 563 KYTD------LLRIAL-MAEDEAIFEEAHKQ 586

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 22/214 (10%), Positives = 49/214 (22%), Gaps = 75/214 (35%)

Query: 23  SSQALASAISSPSSKRRSRSSCSSDIGPLVCRYVQGLDRSALFGPQLAKQPHRSRSCEYY 82
               L   +         R   +    P            ++    +          + +
Sbjct: 303 VKSLLLKYLDCRPQDLP-REVLT--TNPRRL---------SIIAESIRDGLATW---DNW 347

Query: 83  PKPRIQHAVRRTCSASLDAFDENENETNCRDNAVNSESESRDSRDGFVDPPWEEDEIIQE 142
                   +     +SL+  +  E        +V            F             
Sbjct: 348 KHVNCD-KLTTIIESSLNVLEPAEYRKMFDRLSV------------FPP----------- 383

Query: 143 SIERKANSVDLPLS-LRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTL- 200
                  S  +P   L +I     W D  +                   ++ +LH ++L 
Sbjct: 384 -------SAHIPTILLSLI-----WFDVIKSDVMV--------------VVNKLHKYSLV 417

Query: 201 ---QMREILFYEDLQGILVRVQRE----MHASFV 227
                   +    +  + ++V+ E    +H S V
Sbjct: 418 EKQPKESTISIPSIY-LELKVKLENEYALHRSIV 450

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	459
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	96.41
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.3
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.28
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.02
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.01
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	95.91
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	95.81
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	95.79
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	95.73
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	95.61
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	95.51
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	95.51
2kat_A	115	Uncharacterized protein; NESG, structure, structur	95.44
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	95.4
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	95.39
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	95.38
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	95.35
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	95.33
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	95.22
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	95.19
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	95.17
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	95.16
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	95.13
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	95.09
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	95.03
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	95.02
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	95.02
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	94.98
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	94.96
2kat_A	115	Uncharacterized protein; NESG, structure, structur	94.96
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	94.89
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	94.81
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	94.79
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	94.77
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	94.69
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	94.54
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	94.35
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	94.34
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	94.29
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	94.28
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	94.28
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	94.22
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	94.14
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	94.1
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	94.09
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	94.03
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	93.91
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	93.89
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	93.85
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	93.79
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	93.77
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	93.75
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	93.73
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	93.67
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	93.64
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	93.54
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	93.49
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	93.44
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	93.43
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	93.34
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	93.34
3k9i_A	117	BH0479 protein; putative protein binding protein,	93.27
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	93.14
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	93.13
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	93.09
3u4t_A	272	TPR repeat-containing protein; structural genomics	93.08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	92.99
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	92.9
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	92.84
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	92.82
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	92.79
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	92.73
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	92.55
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	92.55
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	92.43
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	92.36
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	92.33
3u4t_A	272	TPR repeat-containing protein; structural genomics	92.17
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	92.14
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	92.14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	92.08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	92.03
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	91.95
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	91.88
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	91.86
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	91.84
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	91.77
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	91.66
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	91.5
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	91.48
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	91.47
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	91.44
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	91.38
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	91.38
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	91.37
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	91.2
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	91.15
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	91.14
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	91.01
4g1t_A	472	Interferon-induced protein with tetratricopeptide	90.51
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	90.42
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	90.34
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	90.33
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	90.29
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	90.21
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	90.1
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	90.06
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	90.02
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	89.96
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	89.9
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	89.71
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	89.69
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	89.58
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	89.51
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	89.47
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	89.31
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	89.3
2l6j_A	111	TPR repeat-containing protein associated with HSP;	89.15
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	89.01
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	88.73
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	88.62
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	88.61
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	88.29
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	88.26
4g1t_A	472	Interferon-induced protein with tetratricopeptide	88.22
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	88.09
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	88.03
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	87.67
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	87.53
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	87.02
3iqu_A	236	14-3-3 protein sigma; signal transuction, nucleus,	86.82
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	86.62
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	86.46
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	86.41
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	86.17
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	86.06
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	85.95
2npm_A	260	14-3-3 domain containing protein; cell regulator p	85.95
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	85.82
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	85.77
3uzd_A	248	14-3-3 protein gamma; structural genomics, SGC, st	85.54
2gw1_A	514	Mitochondrial precursor proteins import receptor;	85.5
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	85.44
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	85.31
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	85.16
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	84.68
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	84.65
2o8p_A	227	14-3-3 domain containing protein; signaling protei	84.31
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	84.09
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	83.94
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	83.89
3ubw_A	261	14-3-3E, 14-3-3 protein epsilon; adapter protein,	83.82
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	83.78
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	83.75
2gw1_A	514	Mitochondrial precursor proteins import receptor;	83.27
1klx_A	138	Cysteine rich protein B; structural genomics, heli	83.07
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	82.85
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	82.29
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	81.72
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	81.56
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	81.37
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	81.36
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	81.27
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	81.19
3efz_A	268	14-3-3 protein; 14-3-3, cell regulation, structura	81.09
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	80.92
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	80.65
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	80.2

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=96.41  E-value=0.003  Score=50.48  Aligned_cols=44  Identities=14%  Similarity=0.388  Sum_probs=40.1

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+|+.+..+|+++|+.+|+|+.++.|-|..++. .++++.|.++|
T Consensus        22 ~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~-~~~~~~A~~~~   65 (127)
T 4gcn_A           22 KDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE-EKKFAECVQFC   65 (127)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH-hhhHHHHHHHH
Confidence            578899999999999999999999999987765 78999999887

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.30  E-value=0.0042  Score=45.62  Aligned_cols=45  Identities=18%  Similarity=0.251  Sum_probs=38.8

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      -.+|+.+..+|+++|+.+|+|+..+.|+|.-+.. .+|++.|.++|
T Consensus        17 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~   61 (111)
T 2l6j_A           17 QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK-LGEYTQAIQMC   61 (111)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHH
Confidence            3567889999999999999999999999987755 78999998876

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.28  E-value=0.0037  Score=44.53  Aligned_cols=44  Identities=27%  Similarity=0.442  Sum_probs=37.5

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|+++|..+|+++..+.|+|..+.. .+|+++|.++|
T Consensus        23 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~   66 (91)
T 1na3_A           23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYY   66 (91)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence            457788899999999999999999999987755 78899998886

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.02  E-value=0.0057  Score=45.05  Aligned_cols=45  Identities=16%  Similarity=0.014  Sum_probs=37.3

Q ss_pred             hhhhhHHHHHHHhhhcCCCChH-hHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPL-LLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~L-lL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|+++|+.+|+|+. .+-|.|..++. .+++++|.++|+
T Consensus        14 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~-~~~~~~A~~~~~   59 (99)
T 2kc7_A           14 GDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK-LGDWQKALNNYQ   59 (99)
T ss_dssp             TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH-HTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            4677888999999999999998 88899887655 688899988873

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.01  E-value=0.0055  Score=47.29  Aligned_cols=44  Identities=30%  Similarity=0.483  Sum_probs=39.9

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+|+.+..+|+++|+.+|+|+.++.|+|.-++. .+++++|.++|
T Consensus        41 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~   84 (117)
T 3k9i_A           41 GEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN-LGRYEQGVELL   84 (117)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            468899999999999999999999999998766 78999999887

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=95.91  E-value=0.0058  Score=49.96  Aligned_cols=44  Identities=11%  Similarity=0.102  Sum_probs=28.6

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+|+.+..+|+++|+.+|+|+..+.|.|..+.. .++++.|+++|
T Consensus        45 ~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~~A~~~~   88 (150)
T 4ga2_A           45 KEYDLAKKYICTYINVQERDPKAHRFLGLLYEL-EENTDKAVECY   88 (150)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCchHHHHHHH
Confidence            455666667777777777777766666665533 56666666665

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=95.81  E-value=0.0069  Score=46.26  Aligned_cols=45  Identities=9%  Similarity=0.076  Sum_probs=40.0

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+|+.+..+|+++|+.+|+++..+-|.|+.+. -.++++.|.++|+
T Consensus        21 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~   65 (100)
T 3ma5_A           21 DNASRALALFEELVETDPDYVGTYYHLGKLYE-RLDRTDDAIDTYA   65 (100)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence            56888999999999999999999999998764 5899999999873

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=95.79  E-value=0.0071  Score=48.49  Aligned_cols=43  Identities=23%  Similarity=0.379  Sum_probs=20.5

Q ss_pred             hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      +|+.+..+|+++|+.+|+|+.++.|.|..++. .++++.|.++|
T Consensus        28 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~   70 (126)
T 4gco_A           28 DYPTAMRHYNEAVKRDPENAILYSNRAACLTK-LMEFQRALDDC   70 (126)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh-hccHHHHHHHH
Confidence            34444555555555555555555555544433 34444444443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=95.73  E-value=0.01  Score=45.48  Aligned_cols=44  Identities=14%  Similarity=0.103  Sum_probs=30.3

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|+++|..+|+|+..+-|.|..+.. .+|+++|.++|
T Consensus        52 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~   95 (126)
T 3upv_A           52 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA-VKEYASALETL   95 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HhCHHHHHHHH
Confidence            345667777777777777777777777766544 56777777665

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=95.61  E-value=0.011  Score=42.68  Aligned_cols=43  Identities=12%  Similarity=-0.137  Sum_probs=23.7

Q ss_pred             hhhhHHHHHHHhhhcCCC--ChHhHhHHHHHHHHHh-hhHHHhhccc
Q 012648          415 DYFRTELLYQTGLAQEPN--DPLLLANYAQFLYIVA-HDYDRYLNFL  458 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~~dP~--N~LlL~NYAqFL~~V~-~D~drAEeYy  458 (459)
                      +++.+..+|++++..+|+  ++..+.|.|+.+.. . +|+++|.+||
T Consensus        55 ~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~A~~~~  100 (112)
T 2kck_A           55 RYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY-IEGKEVEAEIAE  100 (112)
T ss_dssp             CHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT-CSSCSHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH-HhCCHHHHHHHH
Confidence            345555556666666666  55555555555432 4 5555555554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=95.51  E-value=0.013  Score=47.37  Aligned_cols=45  Identities=7%  Similarity=-0.037  Sum_probs=37.5

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+|+.+..+|+++|..+|+|+..+-|+|..++. .+|++.|.++|+
T Consensus        59 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~  103 (164)
T 3sz7_A           59 GQHEKAAEDAELATVVDPKYSKAWSRLGLARFD-MADYKGAKEAYE  103 (164)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHHHHHHHHH
Confidence            457778889999999999999999999887755 788999988873

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=95.51  E-value=0.011  Score=45.12  Aligned_cols=44  Identities=11%  Similarity=-0.044  Sum_probs=34.6

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|+++|..+|+|+..+-|.|..+.. .+|++.|.++|
T Consensus        57 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~  100 (137)
T 3q49_B           57 QQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESYDEAIANL  100 (137)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence            456778888888888888888888888877655 67888888776

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=95.44  E-value=0.013  Score=44.60  Aligned_cols=45  Identities=9%  Similarity=-0.045  Sum_probs=39.8

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|+++|..+|+++..+.|+|..+.. .+|++.|.++|+
T Consensus        33 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~   77 (115)
T 2kat_A           33 EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG-QGDRAGARQAWE   77 (115)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            467889999999999999999999999988765 789999998873

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=95.40  E-value=0.015  Score=46.37  Aligned_cols=45  Identities=18%  Similarity=0.075  Sum_probs=39.4

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+|+.+..+|+++|..+|+|+..+-|+|..+.. .+|++.|.++|+
T Consensus        66 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~  110 (142)
T 2xcb_A           66 GLYEQALQSYSYGALMDINEPRFPFHAAECHLQ-LGDLDGAESGFY  110 (142)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            467889999999999999999999999997755 789999998873

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=95.39  E-value=0.012  Score=47.51  Aligned_cols=45  Identities=20%  Similarity=0.293  Sum_probs=39.6

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+|+.+..+|+++|..+|+|+.++.|.|..++. .++++.|.++|+
T Consensus        25 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~   69 (164)
T 3sz7_A           25 KEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA-SGQHEKAAEDAE   69 (164)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH-ccCHHHHHHHHH
Confidence            467889999999999999999999999987765 789999998873

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=95.38  E-value=0.011  Score=47.87  Aligned_cols=41  Identities=17%  Similarity=0.259  Sum_probs=22.5

Q ss_pred             hhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          417 FRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       417 ~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      +.+..+|+++|..+|+|+..+.|+|..++. .+|++.|.++|
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~  138 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFM-QANYAQAIELW  138 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cccHHHHHHHH
Confidence            455555555555555555555555554433 45555555554

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=95.35  E-value=0.013  Score=47.42  Aligned_cols=45  Identities=7%  Similarity=-0.021  Sum_probs=40.2

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|+++|+.+|+|+..+-|.|..+.. .+++++|.++|+
T Consensus       121 g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~  165 (184)
T 3vtx_A          121 GEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG-KGLRDEAVKYFK  165 (184)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH-CCCHHHHHHHHH
Confidence            467889999999999999999999999987754 899999999874

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=95.33  E-value=0.016  Score=41.95  Aligned_cols=44  Identities=11%  Similarity=-0.016  Sum_probs=35.1

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|++++..+|+++..+.|+|..+.. .+|++.|.++|
T Consensus        52 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~   95 (118)
T 1elw_A           52 GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF-LNRFEEAKRTY   95 (118)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence            456778888888888888888888888876644 67888888876

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=95.22  E-value=0.022  Score=41.93  Aligned_cols=45  Identities=16%  Similarity=0.284  Sum_probs=40.1

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|++++..+|+++.++.|+|..+.. .+|++.|.+||+
T Consensus        18 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~   62 (131)
T 1elr_A           18 KDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCE   62 (131)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-hccHHHHHHHHH
Confidence            467889999999999999999999999998765 789999998873

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=95.19  E-value=0.017  Score=43.03  Aligned_cols=46  Identities=13%  Similarity=0.075  Sum_probs=40.1

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      ..+++.+..+|++++..+|+++..+-|+|..+. -.+|++.|.++|+
T Consensus        63 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~  108 (133)
T 2lni_A           63 LLEFQLALKDCEECIQLEPTFIKGYTRKAAALE-AMKDYTKAMDVYQ  108 (133)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HHhhHHHHHHHHH
Confidence            356788999999999999999999999999765 4789999998873

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=95.17  E-value=0.016  Score=46.18  Aligned_cols=46  Identities=11%  Similarity=0.050  Sum_probs=40.5

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      -.+|+.+..+|+++|..+|+|+.++.|.|..+.. .++++.|.++|+
T Consensus        31 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~   76 (142)
T 2xcb_A           31 AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS-LGLYEQALQSYS   76 (142)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence            3567889999999999999999999999998754 889999998873

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=95.16  E-value=0.015  Score=49.24  Aligned_cols=44  Identities=14%  Similarity=0.052  Sum_probs=27.4

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+|+.+..+|+++|..+|+|+..+-|.|..+.. .++++.|.++|
T Consensus        84 g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~-lg~~~eA~~~~  127 (151)
T 3gyz_A           84 EQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR-LKAPLKAKECF  127 (151)
T ss_dssp             TCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            345556666666666666666666666665543 56666666665

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=95.13  E-value=0.017  Score=44.22  Aligned_cols=46  Identities=15%  Similarity=0.114  Sum_probs=40.5

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      -.+|..+..+|+++|..+|+|+.++.|.|..++. .+++++|.++|+
T Consensus        17 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~   62 (126)
T 3upv_A           17 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCN   62 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCHHHHHHHHH
Confidence            3568889999999999999999999999998765 789999998873

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=95.09  E-value=0.021  Score=46.09  Aligned_cols=44  Identities=16%  Similarity=0.107  Sum_probs=35.6

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+|+.+..+|+++|+.||+|+..+.|.|..+.. .+|+++|.++|
T Consensus        19 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~a~~~~   62 (184)
T 3vtx_A           19 GDFDGAIRAYKKVLKADPNNVETLLKLGKTYMD-IGLPNDAIESL   62 (184)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            467788888999999999999888888886654 67888887765

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=95.03  E-value=0.015  Score=49.25  Aligned_cols=47  Identities=4%  Similarity=0.083  Sum_probs=41.5

Q ss_pred             cchhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       412 d~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .-.+|+.+..+|+++|..+|+|+..+.|.|.-+. -.++++.|.++|+
T Consensus        48 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~Ai~~~~   94 (151)
T 3gyz_A           48 NKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ-IKEQFQQAADLYA   94 (151)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHccHHHHHHHHH
Confidence            3467899999999999999999999999998765 5899999999873

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=95.02  E-value=0.021  Score=46.80  Aligned_cols=46  Identities=15%  Similarity=0.069  Sum_probs=39.6

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      -.+|+.+..+|+++|..+|+|+..+-|.|..+.. .+|++.|+++|+
T Consensus        68 ~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~  113 (148)
T 2vgx_A           68 MGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ-XGELAEAESGLF  113 (148)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            3567889999999999999999999999988754 789999998873

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=95.02  E-value=0.027  Score=41.33  Aligned_cols=45  Identities=7%  Similarity=0.042  Sum_probs=37.7

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|++++..+|+++..+-++|..+.. .+|++.|.++|+
T Consensus        60 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~  104 (131)
T 2vyi_A           60 GNYAGAVQDCERAICIDPAYSKAYGRMGLALSS-LNKHVEAVAYYK  104 (131)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             hchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH-hCCHHHHHHHHH
Confidence            457788899999999999999999999987654 789999988873

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=94.98  E-value=0.02  Score=43.65  Aligned_cols=46  Identities=13%  Similarity=0.098  Sum_probs=40.3

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      ..+|+.+..+|+++|..+|+|+.++.|+|..+.. .+|+++|.++|+
T Consensus        22 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~   67 (137)
T 3q49_B           22 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCR   67 (137)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH-hcCHHHHHHHHH
Confidence            3567889999999999999999999999998765 889999998873

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=94.96  E-value=0.029  Score=40.55  Aligned_cols=44  Identities=14%  Similarity=0.161  Sum_probs=33.2

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|++++..+|+|+..+.|+|+.+.. .+|++.|.++|
T Consensus        18 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~   61 (118)
T 1elw_A           18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KGDYQKAYEDG   61 (118)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh-hccHHHHHHHH
Confidence            456777788888888888888888888876644 67788887765

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=94.96  E-value=0.017  Score=43.86  Aligned_cols=41  Identities=20%  Similarity=0.133  Sum_probs=36.2

Q ss_pred             hHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          418 RTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       418 rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+..+|+++|+.+|+|+..+-|+|..++. .+|++.|+++|+
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~   43 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAE-HEQFDAALPHLR   43 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHH-ccCHHHHHHHHH
Confidence            46789999999999999999999987755 899999999873

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=94.89  E-value=0.02  Score=48.76  Aligned_cols=43  Identities=21%  Similarity=0.263  Sum_probs=23.6

Q ss_pred             hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      +++.+..+|+++|+.+|+|+..+.|.|..+.. .++++.|.++|
T Consensus        69 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~  111 (208)
T 3urz_A           69 NYDKAYLFYKELLQKAPNNVDCLEACAEMQVC-RGQEKDALRMY  111 (208)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            44555555555555555555555555555432 45555555554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=94.81  E-value=0.016  Score=43.17  Aligned_cols=45  Identities=20%  Similarity=0.259  Sum_probs=39.1

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|++++..+|+|+.++.|+|..+. -.+|+++|.++|+
T Consensus        30 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~   74 (133)
T 2lni_A           30 GDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT-KLLEFQLALKDCE   74 (133)
T ss_dssp             TCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHT-TTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HhccHHHHHHHHH
Confidence            35678899999999999999999999998764 4789999998873

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=94.79  E-value=0.022  Score=46.65  Aligned_cols=46  Identities=13%  Similarity=0.135  Sum_probs=40.4

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      -.+|+.+..+|+++|..+|+|+..+.|+|..+. -.++++.|.++|+
T Consensus        34 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~   79 (148)
T 2vgx_A           34 SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ-AMGQYDLAIHSYS   79 (148)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHH-HHhhHHHHHHHHH
Confidence            356888999999999999999999999999765 5889999999873

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=94.77  E-value=0.027  Score=41.33  Aligned_cols=43  Identities=12%  Similarity=0.184  Sum_probs=25.0

Q ss_pred             hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      +++.+..+|++++..+|+++..+.++|..+.. .+|+++|.++|
T Consensus        27 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~   69 (131)
T 2vyi_A           27 NFEAAVHFYGKAIELNPANAVYFCNRAAAYSK-LGNYAGAVQDC   69 (131)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hhchHHHHHHH
Confidence            34555566666666666666666666655533 55666665554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=94.69  E-value=0.025  Score=45.25  Aligned_cols=45  Identities=9%  Similarity=-0.027  Sum_probs=40.2

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|+++|+.||+|+..+-|.|..+.. .+|++.|.++|+
T Consensus        61 ~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~~A~~~~~  105 (126)
T 4gco_A           61 MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA-MREWSKAQRAYE  105 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-CCCHHHHHHHHH
Confidence            467889999999999999999999999998755 789999999874

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.54  E-value=0.032  Score=42.46  Aligned_cols=45  Identities=20%  Similarity=0.116  Sum_probs=39.6

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|++++..+|+|+..+-|+|..++. .+|++.|.++|+
T Consensus        79 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~  123 (148)
T 2dba_A           79 EDYDKAETEASKAIEKDGGDVKALYRRSQALEK-LGRLDQAVLDLQ  123 (148)
T ss_dssp             TCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH-HTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            467889999999999999999999999997755 789999998873

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=94.35  E-value=0.035  Score=43.07  Aligned_cols=44  Identities=7%  Similarity=-0.234  Sum_probs=31.7

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|++++..+|+++..+.|+|..+.. .++++.|.++|
T Consensus        61 ~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~  104 (166)
T 1a17_A           61 ECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKFRAALRDY  104 (166)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hccHHHHHHHH
Confidence            356677777777777777777777777776544 56777777765

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=94.34  E-value=0.024  Score=46.24  Aligned_cols=46  Identities=13%  Similarity=0.108  Sum_probs=37.1

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      -.+++.+..+|+++|+.+|+|+-.+-|+|..+....+..+.|+.|+
T Consensus        78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~  123 (150)
T 4ga2_A           78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWV  123 (150)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHH
T ss_pred             cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            3567889999999999999999999999999887555444555543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=94.29  E-value=0.047  Score=43.23  Aligned_cols=44  Identities=16%  Similarity=0.022  Sum_probs=38.9

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|+++|+.+|+|+-.+-|.|..+. -.+++++|.++|
T Consensus        65 g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~-~~g~~~~A~~~~  108 (121)
T 1hxi_A           65 EKDGLAIIALNHARMLDPKDIAVHAALAVSHT-NEHNANAALASL  108 (121)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence            46788999999999999999999999999775 478999999876

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=94.28  E-value=0.041  Score=39.99  Aligned_cols=45  Identities=27%  Similarity=0.434  Sum_probs=38.4

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|++++..+|+++..+.|.|..++. .+|+++|.++|+
T Consensus        57 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~  101 (125)
T 1na0_A           57 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQ  101 (125)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHH
Confidence            467788899999999999999999999988765 789999998873

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=94.28  E-value=0.041  Score=39.99  Aligned_cols=30  Identities=27%  Similarity=0.311  Sum_probs=17.9

Q ss_pred             hhhhHHHHHHHhhhcCCCChHhHhHHHHHH
Q 012648          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFL  444 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL  444 (459)
                      +++.+..+|++++..+|+++..+.|.++.+
T Consensus        92 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  121 (125)
T 1na0_A           92 DYDEAIEYYQKALELDPNNAEAKQNLGNAK  121 (125)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            345556666666666666666666655544

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=94.22  E-value=0.038  Score=42.87  Aligned_cols=45  Identities=16%  Similarity=0.223  Sum_probs=39.8

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .++..+..+|++++..+|+|+.++.|+|..+.. .+|++.|.++|+
T Consensus        27 ~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~   71 (166)
T 1a17_A           27 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDAT   71 (166)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            457889999999999999999999999998755 789999998873

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=94.14  E-value=0.024  Score=40.76  Aligned_cols=45  Identities=13%  Similarity=0.315  Sum_probs=40.0

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|++++..+|+++..+.|+|..++. .+++++|.++|+
T Consensus        20 ~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~   64 (112)
T 2kck_A           20 GNYTESIDLFEKAIQLDPEESKYWLMKGKALYN-LERYEEAVDCYN   64 (112)
T ss_dssp             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-ccCHHHHHHHHH
Confidence            567889999999999999999999999998765 689999998873

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.10  E-value=0.048  Score=41.49  Aligned_cols=44  Identities=23%  Similarity=0.219  Sum_probs=38.5

Q ss_pred             hhhhhHHHHHHHhhhcCCCC---hHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPND---PLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N---~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+|..+..+|++++..+|++   +.++.|+|..++. .+|+++|.++|
T Consensus        42 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~   88 (148)
T 2dba_A           42 GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK-LEDYDKAETEA   88 (148)
T ss_dssp             TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH-HccHHHHHHHH
Confidence            45778899999999999998   8999999987655 78999999887

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=94.09  E-value=0.041  Score=43.60  Aligned_cols=45  Identities=11%  Similarity=0.026  Sum_probs=39.7

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|+++|..+|+|+..+-+.|..+.. .++++.|+++|+
T Consensus        31 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~   75 (121)
T 1hxi_A           31 ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALN   75 (121)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            467889999999999999999999999997754 799999998873

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=94.03  E-value=0.02  Score=47.01  Aligned_cols=45  Identities=11%  Similarity=0.008  Sum_probs=39.3

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|+++|..+|+|+-.+.|+|..+. -.++++.|+++|+
T Consensus        20 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~~~   64 (176)
T 2r5s_A           20 GEHAQALNVIQTLSDELQSRGDVKLAKADCLL-ETKQFELAQELLA   64 (176)
T ss_dssp             TCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHH-HTTCHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HCCCHHHHHHHHH
Confidence            46788999999999999999999999998875 4789999998874

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=93.91  E-value=0.051  Score=40.99  Aligned_cols=45  Identities=11%  Similarity=0.044  Sum_probs=38.8

Q ss_pred             hhhhhHHHHHHHhhhcCCCC---hHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPND---PLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N---~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+|+.+..+|+++|..+|++   +..+-+.|..++. .+|++.|.++|+
T Consensus        53 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~  100 (129)
T 2xev_A           53 RNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG-EGKNTEAQQTLQ  100 (129)
T ss_dssp             TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            56788999999999999999   7778899987764 789999998873

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=93.89  E-value=0.046  Score=43.97  Aligned_cols=45  Identities=20%  Similarity=0.064  Sum_probs=38.3

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+|+.+..+|+++|..+|+|+-.+-+.|+.++. .++++.|.++|+
T Consensus        77 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~-~g~~~~A~~~~~  121 (162)
T 3rkv_A           77 GDLHEAEETSSEVLKREETNEKALFRRAKARIA-AWKLDEAEEDLK  121 (162)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-HhcHHHHHHHHH
Confidence            457788999999999999999999999987755 689999988773

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=93.85  E-value=0.02  Score=56.57  Aligned_cols=48  Identities=13%  Similarity=0.020  Sum_probs=43.6

Q ss_pred             ccchhhhhHHHHHHHhhhcCCCC-hHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          411 DDYADYFRTELLYQTGLAQEPND-PLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       411 dd~~~~~rtE~~Yk~~I~~dP~N-~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .-..+.++++.+|+|+|+.+||+ ...+--||+||..-.+|++.|+.|+
T Consensus       215 ~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L  263 (301)
T 3u64_A          215 SFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEAL  263 (301)
T ss_dssp             TTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Confidence            44788999999999999999975 9999999999988889999999886

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=93.79  E-value=0.049  Score=44.68  Aligned_cols=46  Identities=11%  Similarity=0.197  Sum_probs=40.5

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      -.+++.+..+|+++|..+|+++..+.|.|..+.. .++++.|.++|+
T Consensus        50 ~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~   95 (213)
T 1hh8_A           50 LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TEKYDLAIKDLK   95 (213)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cccHHHHHHHHH
Confidence            3567889999999999999999999999987765 889999998873

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=93.77  E-value=0.062  Score=39.12  Aligned_cols=44  Identities=25%  Similarity=0.403  Sum_probs=35.8

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|++++..+|+++..+.++|..+.. .+|+++|.++|
T Consensus        49 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~   92 (136)
T 2fo7_A           49 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYY   92 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-hcCHHHHHHHH
Confidence            457778888999999999998888888886644 78888888876

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=93.75  E-value=0.049  Score=46.68  Aligned_cols=44  Identities=9%  Similarity=-0.036  Sum_probs=35.2

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|+++|+.+|+|+..+.|.|..+.. .+++++|+++|
T Consensus        98 g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~-~g~~~~A~~~~  141 (217)
T 2pl2_A           98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL-LGERDKAEASL  141 (217)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCChHHHHHHH
Confidence            667788888888888888888888888886644 77888887776

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=93.73  E-value=0.054  Score=40.85  Aligned_cols=46  Identities=15%  Similarity=0.122  Sum_probs=38.8

Q ss_pred             chhhhhHHHHHHHhhhcCCCCh---HhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDP---LLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~---LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      -.+|+.+..+|++++..+|+++   ..+-+.|..++. .+|++.|.++|+
T Consensus        15 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~   63 (129)
T 2xev_A           15 NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA-TRNFQLAEAQFR   63 (129)
T ss_dssp             TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-hccHHHHHHHHH
Confidence            3568889999999999999999   578888886654 899999998873

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=93.67  E-value=0.052  Score=43.85  Aligned_cols=46  Identities=24%  Similarity=0.300  Sum_probs=42.2

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhH--HHhhccc
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDY--DRYLNFL  458 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~--drAEeYy  458 (459)
                      ..+++.+..+|++++..+|+|+.++.|+|..|+.-.+++  +.|.++|
T Consensus        57 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~  104 (177)
T 2e2e_A           57 QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMI  104 (177)
T ss_dssp             TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            357889999999999999999999999999988888998  9999887

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=93.64  E-value=0.043  Score=49.96  Aligned_cols=46  Identities=15%  Similarity=0.156  Sum_probs=38.5

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      -..++.++.+|+++|+.+|+|+-.|.|++..+....++.+.|++||
T Consensus       213 ~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~  258 (291)
T 3mkr_A          213 QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYL  258 (291)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            4578889999999999999999999999988877655556677776

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=93.54  E-value=0.031  Score=50.17  Aligned_cols=43  Identities=14%  Similarity=0.193  Sum_probs=24.4

Q ss_pred             hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      +++.+...|+++|+.+|+++.++.||++|+.. .+|+++|.++|
T Consensus       184 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~g~~~~A~~~~  226 (308)
T 2ond_A          184 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LNEDNNTRVLF  226 (308)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            44555556666666666666666666665533 45555555554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=93.49  E-value=0.076  Score=45.45  Aligned_cols=46  Identities=11%  Similarity=-0.137  Sum_probs=39.9

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHh----------hhHHHhhccc
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVA----------HDYDRYLNFL  458 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~----------~D~drAEeYy  458 (459)
                      -.+++.+..+|+++|+.+|+|+..+.|+|..+....          +|+++|+++|
T Consensus        52 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~  107 (217)
T 2pl2_A           52 LGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVL  107 (217)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHH
Confidence            356788999999999999999999999999886642          9999999877

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=93.44  E-value=0.068  Score=48.14  Aligned_cols=46  Identities=11%  Similarity=0.005  Sum_probs=40.7

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      ..+++.+..+|+++++.+|+|+-.+.|.|+.+. -.++++.|+++|+
T Consensus       130 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~l~  175 (287)
T 3qou_A          130 ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLI-ALNRSEDAEAVLX  175 (287)
T ss_dssp             TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH-HTTCHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHH-HCCCHHHHHHHHH
Confidence            467888999999999999999999999999765 5899999998874

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=93.43  E-value=0.058  Score=39.25  Aligned_cols=45  Identities=24%  Similarity=0.395  Sum_probs=39.5

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|++++..+|+++..+.+.|..+.. .+|+++|.++|+
T Consensus        83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~  127 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYYQ  127 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-HccHHHHHHHHH
Confidence            467889999999999999999999999988765 789999998873

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=93.34  E-value=0.07  Score=41.33  Aligned_cols=43  Identities=12%  Similarity=0.039  Sum_probs=27.5

Q ss_pred             hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      +++.+..+|++++..+|+++..+.+.|..++. .+|+++|.++|
T Consensus       125 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~  167 (186)
T 3as5_A          125 RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ-MGRHEEALPHF  167 (186)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            45556666666666666666666666665543 56666666665

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=93.34  E-value=0.073  Score=41.22  Aligned_cols=44  Identities=11%  Similarity=-0.010  Sum_probs=30.0

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|++++..+|+++..+.++|+.+.. .+|++.|.++|
T Consensus        90 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~  133 (186)
T 3as5_A           90 QKYDLAVPLLIKVAEANPINFNVRFRLGVALDN-LGRFDEAIDSF  133 (186)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH-cCcHHHHHHHH
Confidence            345666777777777777777777777766543 66777777665

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=93.27  E-value=0.016  Score=44.58  Aligned_cols=45  Identities=9%  Similarity=0.041  Sum_probs=37.4

Q ss_pred             hhhhhHHHHHHHhhhc---CCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQ---EPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~---dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|+++|+.   +|+++..+.|.|..++. .++++.|.++|+
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~   51 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT-LGEYRKAEAVLA   51 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            4577899999999999   69999999999987754 899999999873

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=93.14  E-value=0.08  Score=47.49  Aligned_cols=43  Identities=23%  Similarity=0.286  Sum_probs=26.5

Q ss_pred             hhhhHHHHHHHhhhcCCCChH-hHhHHHHHHHHHhhhHHHhhccc
Q 012648          415 DYFRTELLYQTGLAQEPNDPL-LLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~~dP~N~L-lL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      +++.+...|+++|+.+|+|+- ++-||++|+.. .++++.|.++|
T Consensus       114 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~~~~~A~~~~  157 (308)
T 2ond_A          114 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-AEGIKSGRMIF  157 (308)
T ss_dssp             CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH-HHCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhccccCccHHHHHHHHHHHH-hcCHHHHHHHH
Confidence            455666666666666666663 66666666644 45566665554

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=93.13  E-value=0.073  Score=44.19  Aligned_cols=45  Identities=13%  Similarity=-0.083  Sum_probs=38.1

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+|+.+..+|+++|..+|+|+..+-|.|..+.. .+|++.|.++|+
T Consensus       102 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~  146 (198)
T 2fbn_A          102 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMY-FGFLEEAKENLY  146 (198)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-HTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cccHHHHHHHHH
Confidence            467888899999999999999999999988754 788999988873

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=93.09  E-value=0.081  Score=47.64  Aligned_cols=44  Identities=11%  Similarity=-0.044  Sum_probs=32.3

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|+++|+.+|+|+..+-|+|..+.. .+++++|+++|
T Consensus        52 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~   95 (281)
T 2c2l_A           52 QQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESYDEAIANL   95 (281)
T ss_dssp             TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            356667777888888888888777777776643 67778887776

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=93.08  E-value=0.079  Score=44.66  Aligned_cols=44  Identities=7%  Similarity=0.210  Sum_probs=31.7

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|+++++.+|+++..+.|.|..+.. .+|+++|.++|
T Consensus        88 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~  131 (272)
T 3u4t_A           88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN-KGNFPLAIQYM  131 (272)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-ccCHHHHHHHH
Confidence            456677777777777777777777777776654 67777777766

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=92.99  E-value=0.074  Score=44.59  Aligned_cols=44  Identities=14%  Similarity=0.060  Sum_probs=31.7

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|+++|..+|+|+..+.|.|..+.. .+|+++|.++|
T Consensus        91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~  134 (275)
T 1xnf_A           91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRDKLAQDDL  134 (275)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH-hccHHHHHHHH
Confidence            456667777777777777777777777776654 67777777765

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=92.90  E-value=0.082  Score=44.30  Aligned_cols=46  Identities=15%  Similarity=0.174  Sum_probs=40.7

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      ..+++.+..+|+++|..+|+|+..+.+.|..+.. .+|+++|.++|+
T Consensus        56 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~  101 (275)
T 1xnf_A           56 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAYEAFD  101 (275)
T ss_dssp             TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-ccCHHHHHHHHH
Confidence            3577889999999999999999999999997755 789999999873

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=92.84  E-value=0.065  Score=43.20  Aligned_cols=45  Identities=13%  Similarity=0.205  Sum_probs=28.3

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|++++..+|+++..+.++|..+....+|+++|.++|
T Consensus        56 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~  100 (225)
T 2vq2_A           56 KVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYF  100 (225)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            345566666777777777777666666666544226666666665

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=92.82  E-value=0.07  Score=44.68  Aligned_cols=45  Identities=9%  Similarity=0.085  Sum_probs=39.0

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|+++|..+|+++..+.|.|..+.. .+|+++|.++|+
T Consensus        56 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~  100 (228)
T 4i17_A           56 KKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD-MKNNQEYIATLT  100 (228)
T ss_dssp             TCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             hcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH-cccHHHHHHHHH
Confidence            467889999999999999999999999987755 789999998873

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=92.79  E-value=0.091  Score=41.60  Aligned_cols=47  Identities=19%  Similarity=0.194  Sum_probs=39.6

Q ss_pred             cchhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       412 d~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      +....+.+..+++++|..||+|+--+-..|.-.++ .+||++|.+||+
T Consensus        21 ~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g~y~~Ai~~w~   67 (93)
T 3bee_A           21 KQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-SFRFQEAIDTWV   67 (93)
T ss_dssp             TTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            33346788899999999999999998888887766 999999999873

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=92.73  E-value=0.094  Score=43.01  Aligned_cols=39  Identities=18%  Similarity=0.112  Sum_probs=30.8

Q ss_pred             HHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          419 TELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       419 tE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      +..+|+++|+.+|+|+-.+-|+|..+.. .+|+++|.++|
T Consensus        93 a~~~~~~al~~~P~~~~~~~~la~~~~~-~g~~~~A~~~~  131 (176)
T 2r5s_A           93 ELKRLEQELAANPDNFELACELAVQYNQ-VGRDEEALELL  131 (176)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHH-cccHHHHHHHH
Confidence            4677888888888888888888887654 67888887776

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=92.55  E-value=0.072  Score=56.39  Aligned_cols=44  Identities=14%  Similarity=0.116  Sum_probs=33.9

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|+++|+.+|+++..+.|.|..|.+ .+|++.|+++|
T Consensus        57 g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~-~g~~~~A~~~~  100 (723)
T 4gyw_A           57 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKE-MQDVQGALQCY  100 (723)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            456677888888888888888888888877755 67788888776

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=92.55  E-value=0.14  Score=43.61  Aligned_cols=34  Identities=12%  Similarity=0.143  Sum_probs=30.1

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHH
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIV  447 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V  447 (459)
                      .+++.+..+|+++|+.+|+|+-.+-|.+.+++..
T Consensus       102 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~  135 (208)
T 3urz_A          102 GQEKDALRMYEKILQLEADNLAANIFLGNYYYLT  135 (208)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            5678899999999999999999999999887643

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=92.43  E-value=0.098  Score=44.99  Aligned_cols=46  Identities=17%  Similarity=0.143  Sum_probs=40.5

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      ..+++.+..+|+++++.+|+|+..+.++|..+.. .+|+++|.++|+
T Consensus       285 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~  330 (359)
T 3ieg_A          285 DEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI-EEMYDEAIQDYE  330 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            3467889999999999999999999999997755 899999999873

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=92.36  E-value=0.11  Score=42.84  Aligned_cols=44  Identities=14%  Similarity=0.103  Sum_probs=28.3

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|+++|+.+|+++..+.+.|..+.. .+|++.|.++|
T Consensus       187 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~  230 (258)
T 3uq3_A          187 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA-VKEYASALETL  230 (258)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence            345566666777777777777666666665543 56666666665

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=92.33  E-value=0.13  Score=42.92  Aligned_cols=44  Identities=25%  Similarity=0.412  Sum_probs=36.1

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|++++..+|+++..+.++|..+.. .+|+++|++||
T Consensus        85 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~  128 (252)
T 2ho1_A           85 MEPKLADEEYRKALASDSRNARVLNNYGGFLYE-QKRYEEAYQRL  128 (252)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH-HhHHHHHHHHH
Confidence            467778888888988889888888888887654 78888888876

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=92.17  E-value=0.12  Score=43.57  Aligned_cols=43  Identities=19%  Similarity=0.213  Sum_probs=27.7

Q ss_pred             hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      +++.+..+|+++|+.+|+|+..+.+.|. ++.-.+|++.|.++|
T Consensus        18 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~-~~~~~~~~~~A~~~~   60 (272)
T 3u4t_A           18 NYAEAIEVFNKLEAKKYNSPYIYNRRAV-CYYELAKYDLAQKDI   60 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCCCSTTHHHHHH-HHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHH-HHHHHhhHHHHHHHH
Confidence            4566666677777777776666666666 344466666666665

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=92.14  E-value=0.1  Score=48.50  Aligned_cols=44  Identities=9%  Similarity=0.038  Sum_probs=35.0

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+|+.+..+|+++|+.+|+|+..+-|.|+.++. .+|++.|.++|
T Consensus       210 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~  253 (336)
T 1p5q_A          210 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLA-VNDFELARADF  253 (336)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            456778888888888888888888888887655 67888888776

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=92.14  E-value=0.12  Score=46.19  Aligned_cols=45  Identities=13%  Similarity=0.144  Sum_probs=39.9

Q ss_pred             hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHh----------hhHHHhhcccC
Q 012648          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVA----------HDYDRYLNFLS  459 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~----------~D~drAEeYyk  459 (459)
                      .++.+...|+++|+.||+++-.+-|-+.-++...          +|+++|.+||+
T Consensus        61 ~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~  115 (158)
T 1zu2_A           61 MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQ  115 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHH
Confidence            4778999999999999999999999998887653          79999999984

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=92.08  E-value=0.11  Score=46.25  Aligned_cols=42  Identities=12%  Similarity=-0.058  Sum_probs=20.0

Q ss_pred             hhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          416 YFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       416 ~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      ++.+..+|+++|+.+|+++..+.|.|..+.. .+|+++|.++|
T Consensus       263 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~  304 (365)
T 4eqf_A          263 SEEAVEAYTRALEIQPGFIRSRYNLGISCIN-LGAYREAVSNF  304 (365)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            4444455555555555555555554444332 34455554444

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=92.03  E-value=0.13  Score=44.09  Aligned_cols=46  Identities=11%  Similarity=0.275  Sum_probs=40.5

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      -.+++.+..+|++++..+|+|+..+.|+|..+.. .+++++|+++|+
T Consensus       172 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~  217 (330)
T 3hym_B          172 TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ-NGEWKTAEKWFL  217 (330)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cccHHHHHHHHH
Confidence            3467889999999999999999999999998765 899999998873

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=91.95  E-value=0.16  Score=42.16  Aligned_cols=46  Identities=15%  Similarity=0.090  Sum_probs=39.5

Q ss_pred             chhhhhHHHHHHHhhhcCCCCh----------------HhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDP----------------LLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~----------------LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      ..+|..+..+|+++|..+|+++                .++.|.|..+.. .+|++.|.+||+
T Consensus        51 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~  112 (198)
T 2fbn_A           51 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK-NKDYPKAIDHAS  112 (198)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHH
Confidence            3467889999999999999998                889999997754 789999998873

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=91.88  E-value=0.11  Score=51.34  Aligned_cols=43  Identities=7%  Similarity=-0.239  Sum_probs=25.2

Q ss_pred             hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      +|+.+..+|+++|+.+|+++..+.|.|..+.. .+++++|+++|
T Consensus        55 ~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g~~~eA~~~~   97 (477)
T 1wao_1           55 CYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKFRAALRDY   97 (477)
T ss_dssp             CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            45555666666666666666666666654433 45666666555

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=91.86  E-value=0.12  Score=44.24  Aligned_cols=46  Identities=7%  Similarity=0.166  Sum_probs=40.1

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      ..+++.+..+|+++++.+|+++..+.|.|..+.. .+|+++|.+||+
T Consensus       249 ~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~  294 (330)
T 3hym_B          249 LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSL-MGNFENAVDYFH  294 (330)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH-HTCHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHH-hccHHHHHHHHH
Confidence            3567889999999999999999999999988755 789999999873

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=91.84  E-value=0.064  Score=39.43  Aligned_cols=46  Identities=13%  Similarity=0.256  Sum_probs=39.4

Q ss_pred             chhhhhHHHHHHHhhhcCCCC-------hHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPND-------PLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N-------~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      -.+++.+..+|++++..+|++       +..+.|.|..++. .+|++.|.++|+
T Consensus        51 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~  103 (131)
T 1elr_A           51 KGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK-EEKYKDAIHFYN  103 (131)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH-hccHHHHHHHHH
Confidence            356788999999999999988       8889999988765 789999999873

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=91.77  E-value=0.13  Score=45.89  Aligned_cols=44  Identities=16%  Similarity=0.021  Sum_probs=28.7

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|++++..+|+|+..+.|.|..+.. .+|+++|.++|
T Consensus       113 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~  156 (365)
T 4eqf_A          113 ENEQAAIVALQRCLELQPNNLKALMALAVSYTN-TSHQQDACEAL  156 (365)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc-cccHHHHHHHH
Confidence            345666667777777777777777776665533 56677776665

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=91.66  E-value=0.14  Score=42.90  Aligned_cols=45  Identities=9%  Similarity=0.048  Sum_probs=36.0

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHh-------HhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLL-------LANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~Ll-------L~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|+++|..+|+|+.+       +.|.++.+ .-.+|+++|+++|+
T Consensus        90 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~-~~~~~~~~A~~~~~  141 (228)
T 4i17_A           90 KNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKF-QQAGNIEKAEENYK  141 (228)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHH-HHhccHHHHHHHHH
Confidence            56788999999999999999955       55555544 34789999999873

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=91.50  E-value=0.17  Score=45.58  Aligned_cols=44  Identities=14%  Similarity=0.137  Sum_probs=38.9

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+|+.+..+|+++|..+|+|+.++.|+|..+. -.++++.|+++|
T Consensus        18 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~   61 (281)
T 2c2l_A           18 RKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADC   61 (281)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHH
Confidence            56788999999999999999999999998765 478999999887

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=91.48  E-value=0.16  Score=40.83  Aligned_cols=42  Identities=2%  Similarity=-0.125  Sum_probs=20.0

Q ss_pred             hhhHHHHHHHhhhcCC-CChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          416 YFRTELLYQTGLAQEP-NDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       416 ~~rtE~~Yk~~I~~dP-~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      ++.+..+|++++..+| +++..+. .+-.++.-.++++.|..|+
T Consensus       163 ~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~  205 (225)
T 2vq2_A          163 LGDADYYFKKYQSRVEVLQADDLL-LGWKIAKALGNAQAAYEYE  205 (225)
T ss_dssp             HHHHHHHHHHHHHHHCSCCHHHHH-HHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHH-HHHHHHHhcCcHHHHHHHH
Confidence            4445555555555555 5555442 2223333445555555443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=91.47  E-value=0.16  Score=41.87  Aligned_cols=45  Identities=16%  Similarity=0.132  Sum_probs=40.0

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|+++|..+|+++.++.|.|..+.. .+|++.|.++|+
T Consensus       153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~  197 (258)
T 3uq3_A          153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCN  197 (258)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-hCCHHHHHHHHH
Confidence            567889999999999999999999999987755 789999998873

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=91.44  E-value=0.16  Score=41.77  Aligned_cols=44  Identities=14%  Similarity=0.124  Sum_probs=29.5

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|++++..+|+++.++.++|..+. -.+|++.|.++|
T Consensus       105 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~  148 (243)
T 2q7f_A          105 EMYKEAKDMFEKALRAGMENGDLFYMLGTVLV-KLEQPKLALPYL  148 (243)
T ss_dssp             TCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH-HTSCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhccHHHHHHHH
Confidence            35566677777777777777777777776554 356777776665

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=91.38  E-value=0.14  Score=50.09  Aligned_cols=44  Identities=14%  Similarity=0.033  Sum_probs=35.3

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|+++|+.+|+|+..+.|+|..+.. .+|++.|.++|
T Consensus        71 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~  114 (568)
T 2vsy_A           71 QRHAEAAVLLQQASDAAPEHPGIALWLGHALED-AGQAEAAAAAY  114 (568)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            456778888888888888888888888886644 78888888876

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=91.38  E-value=0.16  Score=43.70  Aligned_cols=44  Identities=7%  Similarity=-0.140  Sum_probs=32.1

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|++++..+|+++..+.+.|..+.. .+|++.|.++|
T Consensus        51 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~   94 (359)
T 3ieg_A           51 GKSKAALPDLTKVIALKMDFTAARLQRGHLLLK-QGKLDEAEDDF   94 (359)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH-cCChHHHHHHH
Confidence            356667777888888888888777777776544 67777777766

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=91.37  E-value=0.16  Score=41.69  Aligned_cols=45  Identities=9%  Similarity=0.163  Sum_probs=40.0

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|++++..+|+++..+.++|..+.. .+|+++|.++|+
T Consensus        71 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~  115 (243)
T 2q7f_A           71 NELERALAFYDKALELDSSAATAYYGAGNVYVV-KEMYKEAKDMFE  115 (243)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH-hccHHHHHHHHH
Confidence            467889999999999999999999999998765 789999998873

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=91.20  E-value=0.17  Score=42.29  Aligned_cols=44  Identities=14%  Similarity=0.056  Sum_probs=34.0

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|++++..+|+++..+.+.+..+. -.+|+++|.++|
T Consensus       189 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~  232 (252)
T 2ho1_A          189 REYVPARQYYDLFAQGGGQNARSLLLGIRLAK-VFEDRDTAASYG  232 (252)
T ss_dssp             TCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH-HTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HccCHHHHHHHH
Confidence            45677788888888888888888877777664 468888888776

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=91.15  E-value=0.15  Score=48.65  Aligned_cols=45  Identities=22%  Similarity=0.150  Sum_probs=39.3

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+|+.+..+|+++|+.+|+|+..+-|+|..++. .+|+++|.++|+
T Consensus       287 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~eA~~~l~  331 (370)
T 1ihg_A          287 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG-LKEYDQALADLK  331 (370)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH-ccCHHHHHHHHH
Confidence            467889999999999999999999999988765 689999998873

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=91.14  E-value=0.13  Score=49.95  Aligned_cols=46  Identities=17%  Similarity=0.189  Sum_probs=40.8

Q ss_pred             chhh-hhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADY-FRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~-~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      ..+| +.+..+|+++|+.+|+|+..+.|.|..++. .+|+++|+++|+
T Consensus       115 ~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~  161 (474)
T 4abn_A          115 TPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK-KGDVTSAHTCFS  161 (474)
T ss_dssp             SSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            3567 899999999999999999999999987765 799999999873

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=91.01  E-value=0.14  Score=54.33  Aligned_cols=45  Identities=11%  Similarity=-0.004  Sum_probs=39.3

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+.++|+++|+.+|+|+..+.|.|..+.+ .+++++|+++|+
T Consensus        91 g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~-~g~~~eAi~~~~  135 (723)
T 4gyw_A           91 QDVQGALQCYTRAIQINPAFADAHSNLASIHKD-SGNIPEAIASYR  135 (723)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            456778999999999999999999999988765 789999999884

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=90.51  E-value=0.18  Score=46.43  Aligned_cols=47  Identities=17%  Similarity=0.239  Sum_probs=39.4

Q ss_pred             chhhhhHHHHHHHhhhcCCCChH---hHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDPL---LLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~L---lL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      ..+++.+..+|+++|+.+|++..   ++-+|+.|+..-.+|+++|.+||+
T Consensus       347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~  396 (472)
T 4g1t_A          347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFI  396 (472)
T ss_dssp             TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            35678899999999999998764   567899998888899999999873

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=90.42  E-value=0.18  Score=46.97  Aligned_cols=45  Identities=13%  Similarity=-0.011  Sum_probs=39.6

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+|+.+..+|+++|+.+|+|+-.+-|.|+-+.. .++++.|+++|+
T Consensus       244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~-~g~~~~A~~~l~  288 (338)
T 2if4_A          244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAE-LGQMDSARDDFR  288 (338)
T ss_dssp             TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            467889999999999999999999999998755 789999998873

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=90.34  E-value=0.22  Score=42.53  Aligned_cols=43  Identities=19%  Similarity=0.066  Sum_probs=26.6

Q ss_pred             hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      +++.+..+|++++..+|+++..+.|.|..+.. .+|++.|.++|
T Consensus       221 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~  263 (327)
T 3cv0_A          221 RPQEALDAYNRALDINPGYVRVMYNMAVSYSN-MSQYDLAAKQL  263 (327)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hccHHHHHHHH
Confidence            45556666666666666666666666665433 56666666655

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=90.33  E-value=0.22  Score=43.75  Aligned_cols=44  Identities=9%  Similarity=-0.065  Sum_probs=31.5

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|++++..+|+++..+.|.|..+.. .+|++.|.++|
T Consensus       265 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~  308 (368)
T 1fch_A          265 NQSEEAVAAYRRALELQPGYIRSRYNLGISCIN-LGAHREAVEHF  308 (368)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            456667777777777777777777777776644 67777777766

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=90.29  E-value=0.2  Score=48.28  Aligned_cols=45  Identities=24%  Similarity=0.294  Sum_probs=38.0

Q ss_pred             chhhhhHHHHHHHhhhcCCCCh-HhHhHHHHHHHHHhhhHHHhhccc
Q 012648          413 YADYFRTELLYQTGLAQEPNDP-LLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~-LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      ..+++++...|+++|+.+|+|+ +++-||++|+.. .+++++|.++|
T Consensus       334 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~~~~~A~~~~  379 (530)
T 2ooe_A          334 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-AEGIKSGRMIF  379 (530)
T ss_dssp             TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHH-hcCHHHHHHHH
Confidence            3578889999999999999996 789999999865 57788888776

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=90.21  E-value=0.26  Score=44.78  Aligned_cols=45  Identities=13%  Similarity=0.073  Sum_probs=40.5

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      ..+..+..+|+++++.+|+|+.++.|.|..+.. .++++.|+++|+
T Consensus       180 ~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~eA~~~l~  224 (291)
T 3mkr_A          180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA-QGRWEAAEGVLQ  224 (291)
T ss_dssp             THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            678899999999999999999999999997755 789999999873

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=90.10  E-value=0.23  Score=43.67  Aligned_cols=46  Identities=17%  Similarity=0.213  Sum_probs=40.8

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      ..+++.+..+|++++..+|+++..+.|.|..+.. .++++.|.++|+
T Consensus       230 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~  275 (368)
T 1fch_A          230 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-GNQSEEAVAAYR  275 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            3568889999999999999999999999998765 889999999873

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=90.06  E-value=0.17  Score=49.26  Aligned_cols=44  Identities=16%  Similarity=0.082  Sum_probs=34.7

Q ss_pred             hhhhhHHHHHHHhhhcCC---CChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEP---NDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP---~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|++++..+|   +|+..+.|+|..++. .+|+++|.++|
T Consensus       235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~  281 (474)
T 4abn_A          235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY-EESYGEALEGF  281 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            667788888888888888   888888888877654 67888888776

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=90.02  E-value=0.22  Score=49.08  Aligned_cols=46  Identities=13%  Similarity=0.143  Sum_probs=34.4

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHH-HHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFL-YIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL-~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|+++++.+|+++..+.|++... +.-++++++|.++|+
T Consensus        88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            4678899999999999999999999988862 344789999998874

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=89.96  E-value=0.12  Score=49.96  Aligned_cols=44  Identities=14%  Similarity=0.185  Sum_probs=37.2

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++++..+|+++|+.+|+|+-++-||++|+.. .+|+++|..+|
T Consensus       405 ~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~-~g~~~~Ar~~~  448 (530)
T 2ooe_A          405 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LNEDNNTRVLF  448 (530)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-TTCHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh-CCCHhhHHHHH
Confidence            456788889999999999999999999999865 68888888776

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=89.90  E-value=0.21  Score=48.71  Aligned_cols=46  Identities=11%  Similarity=0.122  Sum_probs=38.2

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHh--hhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVA--HDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~--~D~drAEeYyk  459 (459)
                      .+++.+..+|+++++.+|+|+..+.|+|..+....  +|+++|.++|+
T Consensus       105 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~  152 (568)
T 2vsy_A          105 GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVR  152 (568)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            45777889999999999999999999998887643  88999988873

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=89.71  E-value=0.27  Score=40.27  Aligned_cols=46  Identities=15%  Similarity=0.056  Sum_probs=39.0

Q ss_pred             chhhhhHHHHHHHhhhcCCCCh----------------HhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDP----------------LLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~----------------LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      -.+++.+..+|++++..+|+|+                ..+-|.|..++. .+|+++|.++|+
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~  145 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK-KEEWKKAEEQLA  145 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH-ccCHHHHHHHHH
Confidence            3467889999999999999888                888899987755 789999999873

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=89.69  E-value=0.21  Score=46.36  Aligned_cols=44  Identities=14%  Similarity=0.042  Sum_probs=33.5

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|+++|+.+|+|+..+-+.|..+.. .++++.|.++|
T Consensus        73 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~  116 (537)
T 3fp2_A           73 GDLEKVIEFTTKALEIKPDHSKALLRRASANES-LGNFTDAMFDL  116 (537)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            456777888888888888888888888876644 67788887766

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=89.58  E-value=0.27  Score=44.30  Aligned_cols=43  Identities=19%  Similarity=0.156  Sum_probs=24.0

Q ss_pred             hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      +++.+..+|+++++.+|+|+..+.|.+..+. -.+|+++|.++|
T Consensus       286 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~  328 (388)
T 1w3b_A          286 SVAEAEDCYNTALRLCPTHADSLNNLANIKR-EQGNIEEAVRLY  328 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCcccHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence            3445555666666666666665555555443 355566665554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=89.51  E-value=0.27  Score=35.91  Aligned_cols=32  Identities=22%  Similarity=0.380  Sum_probs=25.3

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhH--hHHHHHH
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLL--ANYAQFL  444 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL--~NYAqFL  444 (459)
                      -.+++.+..+|+++|..+|+|+..+  .++++.+
T Consensus        48 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~   81 (99)
T 2kc7_A           48 LGDWQKALNNYQSAIELNPDSPALQARKMVMDIL   81 (99)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            3568889999999999999999888  4444433

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=89.47  E-value=0.18  Score=40.46  Aligned_cols=44  Identities=20%  Similarity=0.175  Sum_probs=38.1

Q ss_pred             hhhhhHHHHHHHhhhc------------------CCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQ------------------EPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~------------------dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+|..+..+|+++|..                  +|.++.++.|.|.-+.. .+|++.|.++|
T Consensus        25 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~A~~~~   86 (162)
T 3rkv_A           25 KDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN-IGDLHEAEETS   86 (162)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence            4678899999999999                  78888999999988755 78999999887

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=89.31  E-value=0.3  Score=47.54  Aligned_cols=45  Identities=7%  Similarity=0.096  Sum_probs=38.1

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+|+.+..+|+++|+.+|+|+..|-|.|+-++. .+|++.|.++|+
T Consensus       331 g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~-~g~~~~A~~~~~  375 (457)
T 1kt0_A          331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLL-MNEFESAKGDFE  375 (457)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-ccCHHHHHHHHH
Confidence            467788999999999999999999999987765 688999988873

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=89.30  E-value=0.3  Score=41.71  Aligned_cols=46  Identities=13%  Similarity=0.134  Sum_probs=41.0

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      ..+++.+..+|++++..+|+++..+.+.|..+.. .++++.|.++|+
T Consensus       185 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~  230 (327)
T 3cv0_A          185 SNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN-GNRPQEALDAYN  230 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            3568899999999999999999999999998876 889999998873

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=89.15  E-value=0.34  Score=35.27  Aligned_cols=45  Identities=11%  Similarity=0.005  Sum_probs=36.1

Q ss_pred             hhhhhHHHHHHHhhhcCCCC------hHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPND------PLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N------~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|+++|..+|+|      +..+-+.++.+.. .++++.|.+.|+
T Consensus        52 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~  102 (111)
T 2l6j_A           52 GEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGA-VGSVQIPVVEVD  102 (111)
T ss_dssp             TCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHH-HHCCCCCSSSSS
T ss_pred             cCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHH-HHhHhhhHhHHH
Confidence            46788999999999999999      8888888887655 457777776653

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=89.01  E-value=0.35  Score=44.91  Aligned_cols=45  Identities=11%  Similarity=0.038  Sum_probs=39.2

Q ss_pred             hhhhhHHHHHHHhhhcCCCC---------------hHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPND---------------PLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N---------------~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+|+.+..+|+++|..+|++               +.++.|+|..+.. .+++++|.++|+
T Consensus       161 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~  220 (336)
T 1p5q_A          161 GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK-LQAFSAAIESCN  220 (336)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            46888999999999999999               5899999997655 789999999873

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=88.73  E-value=0.34  Score=43.57  Aligned_cols=42  Identities=21%  Similarity=0.160  Sum_probs=34.1

Q ss_pred             hhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          416 YFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       416 ~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      +..+...|+++++.+|+|+-.+-|+|..|.. .++++.|+++|
T Consensus       201 ~~~a~~~l~~al~~~P~~~~~~~~la~~l~~-~g~~~~A~~~l  242 (287)
T 3qou_A          201 DTPEIQQLQQQVAENPEDAALATQLALQLHQ-VGRNEEALELL  242 (287)
T ss_dssp             SCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             cCccHHHHHHHHhcCCccHHHHHHHHHHHHH-cccHHHHHHHH
Confidence            3345678899999999999999999987754 78888888776

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=88.62  E-value=0.33  Score=44.10  Aligned_cols=45  Identities=16%  Similarity=0.152  Sum_probs=39.0

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|++++..+|+|+..+.+.|..+. -.+|++.|.++|+
T Consensus       309 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~  353 (450)
T 2y4t_A          309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL-IEEMYDEAIQDYE  353 (450)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HhcCHHHHHHHHH
Confidence            46788999999999999999999999999875 4789999998873

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=88.61  E-value=0.3  Score=47.24  Aligned_cols=42  Identities=10%  Similarity=0.118  Sum_probs=33.8

Q ss_pred             hhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          416 YFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       416 ~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      ++.+..+|+++|..+|+|+..+.|.+..+.. .+++++|.++|
T Consensus       148 ~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~-~g~~~eAl~~~  189 (382)
T 2h6f_A          148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEW-LRDPSQELEFI  189 (382)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCTTHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-ccCHHHHHHHH
Confidence            7778888888888888888888888876644 57888888776

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=88.29  E-value=0.4  Score=45.59  Aligned_cols=40  Identities=23%  Similarity=0.417  Sum_probs=34.8

Q ss_pred             hhHHHHHHHhhh-----cCCCChHhHh---HHHHHHHHHhhhHHHhhc
Q 012648          417 FRTELLYQTGLA-----QEPNDPLLLA---NYAQFLYIVAHDYDRYLN  456 (459)
Q Consensus       417 ~rtE~~Yk~~I~-----~dP~N~LlL~---NYAqFL~~V~~D~drAEe  456 (459)
                      +++...||.|++     ..|.||+-|+   ||+-|+|++-+|.++|-+
T Consensus       147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~  194 (234)
T 2br9_A          147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACR  194 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            467889999884     5899999887   999999999999999854

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=88.26  E-value=0.41  Score=43.07  Aligned_cols=44  Identities=14%  Similarity=0.003  Sum_probs=33.0

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|+++++.+|+++..+.|.|..+. -.+|++.|+++|
T Consensus       251 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~  294 (388)
T 1w3b_A          251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALK-EKGSVAEAEDCY  294 (388)
T ss_dssp             TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH-HHSCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence            45666777888888888888888888877654 467888888776

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=88.22  E-value=0.29  Score=45.04  Aligned_cols=42  Identities=12%  Similarity=-0.021  Sum_probs=26.6

Q ss_pred             hhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          417 FRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       417 ~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      ...+.+++++|..+|+|+-.+.|.+. +|...+|+++|.+||+
T Consensus       413 ~~l~~~~~~~l~~~p~~~~~~~~LG~-~~~~~g~~~~A~~~y~  454 (472)
T 4g1t_A          413 DKLQKIAKMRLSKNGADSEALHVLAF-LQELNEKMQQADEDSE  454 (472)
T ss_dssp             HHHHHHHHHHHHHCC-CTTHHHHHHH-HHHHHHHCC-------
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHH
Confidence            34556677777888999999998886 5677999999999995

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=88.09  E-value=0.37  Score=44.71  Aligned_cols=45  Identities=11%  Similarity=0.135  Sum_probs=40.8

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|+++++.+|+|+..+.|.|+.+.. .+|++.|.++|+
T Consensus       442 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~  486 (537)
T 3fp2_A          442 EKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQ-MEKIDEAIELFE  486 (537)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hccHHHHHHHHH
Confidence            778899999999999999999999999998755 789999999873

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=88.03  E-value=0.3  Score=41.84  Aligned_cols=45  Identities=7%  Similarity=0.075  Sum_probs=39.2

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHH-----HhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYI-----VAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~-----V~~D~drAEeYyk  459 (459)
                      .++..+..+|+++++. |+|+..+-|.+.++..     |.+|+++|.+||+
T Consensus       143 ~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~  192 (212)
T 3rjv_A          143 EDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLN  192 (212)
T ss_dssp             CCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Confidence            4678899999999998 8899999999998876     5669999999984

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=87.67  E-value=0.43  Score=42.91  Aligned_cols=46  Identities=11%  Similarity=0.256  Sum_probs=37.2

Q ss_pred             chhhhhHHHHHHHhhhcCCCChH----hHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDPL----LLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~L----lL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      ..+|+.+..+|+++|+.+|+|+.    ++.+.|..++ -.+|+++|++||+
T Consensus        61 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~  110 (411)
T 4a1s_A           61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYF-YLGDYNKAMQYHK  110 (411)
T ss_dssp             TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHH
T ss_pred             hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHH-HCCCHHHHHHHHH
Confidence            35678899999999999999984    6667777665 4789999999873

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=87.53  E-value=0.42  Score=41.07  Aligned_cols=46  Identities=15%  Similarity=0.050  Sum_probs=38.1

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhH-----------------hHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLL-----------------ANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL-----------------~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      -.+++.+..+|+++|..+|+++...                 -+.|..++ -.+|++.|.++|+
T Consensus       110 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~  172 (261)
T 3qky_A          110 QTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYE-RRELYEAAAVTYE  172 (261)
T ss_dssp             CHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHH
Confidence            6788999999999999999998776                 45566654 4899999998873

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=87.02  E-value=0.56  Score=40.31  Aligned_cols=45  Identities=11%  Similarity=0.030  Sum_probs=36.1

Q ss_pred             hhhhhHHHHHHHhhhcCCCC---hHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPND---PLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N---~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+|+.+..+|+++|..+|++   +..+-+.|.-++. .+|++.|.++|+
T Consensus        29 g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~   76 (261)
T 3qky_A           29 GKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ-NKEYLLAASEYE   76 (261)
T ss_dssp             TCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH-hCcHHHHHHHHH
Confidence            56788899999999999999   6667777776654 789999988873

>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...

Probab=86.82  E-value=0.57  Score=44.78  Aligned_cols=41  Identities=22%  Similarity=0.445  Sum_probs=35.5

Q ss_pred             hhhHHHHHHHhhh-----cCCCChHhHh---HHHHHHHHHhhhHHHhhc
Q 012648          416 YFRTELLYQTGLA-----QEPNDPLLLA---NYAQFLYIVAHDYDRYLN  456 (459)
Q Consensus       416 ~~rtE~~Yk~~I~-----~dP~N~LlL~---NYAqFL~~V~~D~drAEe  456 (459)
                      -+++...||.|++     ..|.||+-|+   ||+-|+|++.+|.++|-+
T Consensus       149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~  197 (236)
T 3iqu_A          149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAIS  197 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            4568889999875     5899999887   999999999999999864

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=86.62  E-value=0.35  Score=40.07  Aligned_cols=45  Identities=18%  Similarity=0.185  Sum_probs=38.7

Q ss_pred             hhhhhHHHHHHHhhhc--------CCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQ--------EPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~--------dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|++++..        +|.++..+.|.|..+.. .+|+++|.++|+
T Consensus       141 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~  193 (283)
T 3edt_B          141 GKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK-QGKYQDAETLYK  193 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH-HTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            4678899999999998        88888999999987754 799999999873

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=86.46  E-value=0.46  Score=46.25  Aligned_cols=45  Identities=11%  Similarity=0.160  Sum_probs=39.2

Q ss_pred             hhhhhHHHHHHHhhhcCCCC---------------hHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPND---------------PLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N---------------~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+|..+..+|+++|..+|++               ..++.|+|..++. .++|++|.++|+
T Consensus       282 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~  341 (457)
T 1kt0_A          282 GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK-LREYTKAVECCD  341 (457)
T ss_dssp             TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHH
Confidence            46888999999999999999               5889999988765 789999998873

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=86.41  E-value=0.65  Score=42.16  Aligned_cols=45  Identities=4%  Similarity=-0.156  Sum_probs=38.8

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|+++++.+|+++..+.+.|..+.. .++++.|.++|+
T Consensus        74 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~  118 (450)
T 2y4t_A           74 GKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK-QGKLDEAEDDFK  118 (450)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            467788999999999999999999999988755 789999998873

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=86.17  E-value=0.21  Score=39.60  Aligned_cols=45  Identities=2%  Similarity=0.066  Sum_probs=34.6

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHh-------HhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLL-------LANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~Ll-------L~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+|+.+..+|+++|+.+|+++-.       +.|-+.. +.-.+|++.|.+||+
T Consensus        56 ~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~-~~~~~~~~~A~~~~~  107 (127)
T 4gcn_A           56 KKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNA-FQKQNDLSLAVQWFH  107 (127)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHH-HHHcCCHHHHHHHHH
Confidence            46788999999999999988654       3444443 355899999999883

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=86.06  E-value=0.77  Score=38.60  Aligned_cols=45  Identities=13%  Similarity=0.256  Sum_probs=36.2

Q ss_pred             chhhhhHHHHHHHhhhcCCCCh----HhHhHHHHHHHHHhhhHHHhhccc
Q 012648          413 YADYFRTELLYQTGLAQEPNDP----LLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~----LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      ..+++.+..+|++++..+|+|+    .++.+.|..+ ...+|+++|.+||
T Consensus        18 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~   66 (338)
T 3ro2_A           18 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAY-FYLHDYAKALEYH   66 (338)
T ss_dssp             TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHH-HHTTCHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHH-HHcCCHHHHHHHH
Confidence            3567889999999999999996    4555777765 4578999999886

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=85.95  E-value=0.42  Score=49.09  Aligned_cols=44  Identities=14%  Similarity=-0.028  Sum_probs=33.4

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+|+.+..+|+++|+.+|+|+..+-|+|..++. .+|+++|+++|
T Consensus       447 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~  490 (681)
T 2pzi_A          447 GDVAKATRKLDDLAERVGWRWRLVWYRAVAELL-TGDYDSATKHF  490 (681)
T ss_dssp             TCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            456777888888888888888888888876654 67888887776

>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}

Probab=85.95  E-value=0.64  Score=45.02  Aligned_cols=41  Identities=20%  Similarity=0.352  Sum_probs=35.1

Q ss_pred             hhhHHHHHHHhhh----cCCCChHhHh---HHHHHHHHHhhhHHHhhc
Q 012648          416 YFRTELLYQTGLA----QEPNDPLLLA---NYAQFLYIVAHDYDRYLN  456 (459)
Q Consensus       416 ~~rtE~~Yk~~I~----~dP~N~LlL~---NYAqFL~~V~~D~drAEe  456 (459)
                      -+++...||.|++    ..|.||+-|+   ||+-|+|++-+|.++|-+
T Consensus       172 ~e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~  219 (260)
T 2npm_A          172 AEDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAID  219 (260)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            3467888999885    6899999887   999999999999999854

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=85.82  E-value=0.24  Score=47.33  Aligned_cols=45  Identities=11%  Similarity=0.030  Sum_probs=39.1

Q ss_pred             hhhhhHHHHHHHhhh----------------cCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLA----------------QEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~----------------~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+|..+..+|+++|+                .+|.++.++.|+|..++. .+++++|.+||+
T Consensus       237 g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~  297 (370)
T 1ihg_A          237 QNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK-MSDWQGAVDSCL  297 (370)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHH
Confidence            467788999999998                899999999999998764 789999999873

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=85.77  E-value=0.66  Score=44.89  Aligned_cols=41  Identities=27%  Similarity=0.404  Sum_probs=35.1

Q ss_pred             hhhHHHHHHHhhh-----cCCCChHhHh---HHHHHHHHHhhhHHHhhc
Q 012648          416 YFRTELLYQTGLA-----QEPNDPLLLA---NYAQFLYIVAHDYDRYLN  456 (459)
Q Consensus       416 ~~rtE~~Yk~~I~-----~dP~N~LlL~---NYAqFL~~V~~D~drAEe  456 (459)
                      -+++...||.|++     ..|.||+-|+   ||+-|+|++.+|.++|-+
T Consensus       151 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~  199 (260)
T 1o9d_A          151 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACN  199 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            3467889999884     5899999887   999999999999999854

>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*

Probab=85.54  E-value=0.69  Score=44.56  Aligned_cols=40  Identities=23%  Similarity=0.433  Sum_probs=34.5

Q ss_pred             hhHHHHHHHhhh-----cCCCChHhHh---HHHHHHHHHhhhHHHhhc
Q 012648          417 FRTELLYQTGLA-----QEPNDPLLLA---NYAQFLYIVAHDYDRYLN  456 (459)
Q Consensus       417 ~rtE~~Yk~~I~-----~dP~N~LlL~---NYAqFL~~V~~D~drAEe  456 (459)
                      +++...||.|++     ..|.||+-|+   ||+-|+|++.++.++|-+
T Consensus       148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~  195 (248)
T 3uzd_A          148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACH  195 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            467789999875     5899999887   999999999999999854

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=85.50  E-value=0.64  Score=42.60  Aligned_cols=46  Identities=13%  Similarity=0.221  Sum_probs=40.9

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      ..+++.+..+|++++..+|+++..+.+.|+.+. -.+|+++|.++|+
T Consensus       428 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~  473 (514)
T 2gw1_A          428 VENFIEATNLLEKASKLDPRSEQAKIGLAQMKL-QQEDIDEAITLFE  473 (514)
T ss_dssp             TTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HhcCHHHHHHHHH
Confidence            567889999999999999999999999999775 5899999999873

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=85.44  E-value=0.27  Score=40.70  Aligned_cols=46  Identities=17%  Similarity=0.158  Sum_probs=38.5

Q ss_pred             chhhhhHHHHHHHhhhc--------CCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQ--------EPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~--------dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      ..+++.+..+|++++..        +|.++..+.|.|..++ -.+++++|++||+
T Consensus        98 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~  151 (283)
T 3edt_B           98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ-NQGKAEEVEYYYR  151 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence            35678899999999988        6788888999998765 4799999999873

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=85.31  E-value=0.6  Score=44.25  Aligned_cols=46  Identities=15%  Similarity=0.010  Sum_probs=40.3

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      ..+++.+..+|+++++.+|+|+..+.+.+..+. -.+++++|.++|+
T Consensus       529 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~  574 (597)
T 2xpi_A          529 LKMYDAAIDALNQGLLLSTNDANVHTAIALVYL-HKKIPGLAITHLH  574 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhCCHHHHHHHHH
Confidence            356788999999999999999999999998765 5899999999873

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=85.16  E-value=0.34  Score=41.48  Aligned_cols=46  Identities=9%  Similarity=-0.062  Sum_probs=39.8

Q ss_pred             hhhhhHHHHHHHhhhcCC--CChHhHhHHHHHHHH---HhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEP--NDPLLLANYAQFLYI---VAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP--~N~LlL~NYAqFL~~---V~~D~drAEeYyk  459 (459)
                      .++.++..+|+++++.+|  +++..+-|.+.++..   |.+|+++|.+||+
T Consensus       103 ~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  153 (212)
T 3rjv_A          103 TDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK  153 (212)
T ss_dssp             CCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            467889999999999999  568999999998877   5789999999884

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=84.68  E-value=0.4  Score=42.82  Aligned_cols=45  Identities=16%  Similarity=0.110  Sum_probs=37.6

Q ss_pred             hhhhhHHHHHHHhhhcCCCC------hHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPND------PLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N------~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|+++|+..|++      +..+.|.|.++.. .+++++|.+||+
T Consensus       132 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~  182 (292)
T 1qqe_A          132 HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL-DGQYIEASDIYS  182 (292)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-hCCHHHHHHHHH
Confidence            56889999999999998865      4578899988865 789999998873

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=84.65  E-value=1.1  Score=31.39  Aligned_cols=33  Identities=24%  Similarity=0.250  Sum_probs=29.2

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHH
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYI  446 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~  446 (459)
                      .+++.+..+|+++++.+|+|+..+.|+++.+..
T Consensus        57 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   89 (91)
T 1na3_A           57 GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK   89 (91)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence            467889999999999999999999999987754

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=84.31  E-value=0.53  Score=44.92  Aligned_cols=41  Identities=17%  Similarity=0.144  Sum_probs=35.5

Q ss_pred             hhhHHHHHHHhhh-----cCCCChHhHh---HHHHHHHHHhhhHHHhhc
Q 012648          416 YFRTELLYQTGLA-----QEPNDPLLLA---NYAQFLYIVAHDYDRYLN  456 (459)
Q Consensus       416 ~~rtE~~Yk~~I~-----~dP~N~LlL~---NYAqFL~~V~~D~drAEe  456 (459)
                      -+++...||.|.+     ..|.||+-|+   ||+-|+|++.+|.++|-+
T Consensus       141 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~  189 (227)
T 2o8p_A          141 LEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFN  189 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            6678899999985     4789998776   999999999999999865

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=84.09  E-value=0.69  Score=44.74  Aligned_cols=43  Identities=12%  Similarity=0.032  Sum_probs=30.2

Q ss_pred             hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      +++.+..+|+++|+.||+|+..+.|-+..|.. .++++.|.+||
T Consensus       181 ~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~-~g~~~eAl~~~  223 (382)
T 2h6f_A          181 DPSQELEFIADILNQDAKNYHAWQHRQWVIQE-FKLWDNELQYV  223 (382)
T ss_dssp             CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH-cCChHHHHHHH
Confidence            35567777777777788777777776665544 56777777776

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=83.94  E-value=0.33  Score=45.23  Aligned_cols=46  Identities=7%  Similarity=0.039  Sum_probs=13.4

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+|+.+..+|+++|+.+|+|+..+.|+++.....+++.++|..+|+
T Consensus       278 g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~  323 (338)
T 2if4_A          278 GQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYK  323 (338)
T ss_dssp             TCHHHHHHHHHHTTC-------------------------------
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678899999999999999999999999998888888888888774

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=83.89  E-value=0.79  Score=43.46  Aligned_cols=44  Identities=20%  Similarity=0.277  Sum_probs=32.7

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      ..++.+..+|++|++.+|+|+..+.+.+..+.. .+++++|+++|
T Consensus       455 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~  498 (597)
T 2xpi_A          455 GNILLANEYLQSSYALFQYDPLLLNELGVVAFN-KSDMQTAINHF  498 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hCCHHHHHHHH
Confidence            356677778888888888888877777776654 67788887776

>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}

Probab=83.82  E-value=0.91  Score=44.14  Aligned_cols=40  Identities=23%  Similarity=0.417  Sum_probs=34.4

Q ss_pred             hhHHHHHHHhhh-----cCCCChHhHh---HHHHHHHHHhhhHHHhhc
Q 012648          417 FRTELLYQTGLA-----QEPNDPLLLA---NYAQFLYIVAHDYDRYLN  456 (459)
Q Consensus       417 ~rtE~~Yk~~I~-----~dP~N~LlL~---NYAqFL~~V~~D~drAEe  456 (459)
                      +++...||.|++     ..|.||+-|+   ||+-|+|++.+|.++|-+
T Consensus       173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~  220 (261)
T 3ubw_A          173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACR  220 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            457789999864     5899999887   999999999999999854

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=83.78  E-value=0.69  Score=39.72  Aligned_cols=43  Identities=9%  Similarity=0.157  Sum_probs=29.4

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHH---HhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYI---VAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~---V~~D~drAEeYy  458 (459)
                      .+++.+..+|+++++.+  ++..+.|.|..+..   +.+|+++|.+||
T Consensus        56 ~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~  101 (273)
T 1ouv_A           56 KNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYY  101 (273)
T ss_dssp             CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHH
Confidence            45666777777777764  67777777776654   367777777776

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=83.75  E-value=1  Score=39.80  Aligned_cols=45  Identities=18%  Similarity=0.168  Sum_probs=36.9

Q ss_pred             hhhhhHHHHHHHhh---hcCCCCh----HhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGL---AQEPNDP----LLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I---~~dP~N~----LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+|+.+..+|++++   ...|+++    .++-|.|..+. -.+|+++|.+||+
T Consensus       169 ~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~-~~~~y~~Al~~~~  220 (293)
T 2qfc_A          169 GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY-LDSRYEESLYQVN  220 (293)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH-HHhhHHHHHHHHH
Confidence            56888999999999   7788765    57788888664 5899999999973

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=83.27  E-value=0.88  Score=41.65  Aligned_cols=44  Identities=14%  Similarity=0.024  Sum_probs=39.0

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|+++|+.+|+|+-.+-+.|+.+.. .++++.|.++|
T Consensus        53 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~   96 (514)
T 2gw1_A           53 GDLKKVVEMSTKALELKPDYSKVLLRRASANEG-LGKFADAMFDL   96 (514)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence            568889999999999999999999999988755 78999998876

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=83.07  E-value=0.79  Score=37.27  Aligned_cols=42  Identities=14%  Similarity=0.084  Sum_probs=30.5

Q ss_pred             hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHH---HhhhHHHhhccc
Q 012648          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYI---VAHDYDRYLNFL  458 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~---V~~D~drAEeYy  458 (459)
                      ++.++..+|+++.+.  +|+.-.-|.+..+..   |.+|+++|.+||
T Consensus        76 d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~  120 (138)
T 1klx_A           76 DLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTF  120 (138)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence            566777777777765  677777777777665   577788877776

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=82.85  E-value=0.44  Score=48.88  Aligned_cols=43  Identities=19%  Similarity=0.148  Sum_probs=24.9

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+|+.+..+|+++|+.+|+|+..+.|.|..+.. .+|++. +++|
T Consensus       481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~-~g~~~~-~~~~  523 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTFPGELAPKLALAATAEL-AGNTDE-HKFY  523 (681)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH-HTCCCT-TCHH
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cCChHH-HHHH
Confidence            445566666666666666666666666665433 455555 5444

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=82.29  E-value=0.55  Score=39.72  Aligned_cols=45  Identities=20%  Similarity=0.258  Sum_probs=38.2

Q ss_pred             hhhhhHHHHHHHhhhc--------CCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQ--------EPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~--------dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|++++..        +|.++..+.|.|..+.. .+++++|+++|+
T Consensus       167 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~  219 (311)
T 3nf1_A          167 GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK-QGKFKQAETLYK  219 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH-HTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            4578899999999998        78888889999987755 799999999873

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=81.72  E-value=0.9  Score=39.01  Aligned_cols=42  Identities=10%  Similarity=0.049  Sum_probs=19.3

Q ss_pred             hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHH---HhhhHHHhhccc
Q 012648          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYI---VAHDYDRYLNFL  458 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~---V~~D~drAEeYy  458 (459)
                      +++.+..+|+++++.+  ++..+.|++..+..   +.+|+++|.+||
T Consensus       129 ~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~  173 (273)
T 1ouv_A          129 DFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASY  173 (273)
T ss_dssp             CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            3444445555555443  34444444444433   244555555444

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=81.56  E-value=1.4  Score=38.72  Aligned_cols=44  Identities=14%  Similarity=0.307  Sum_probs=34.1

Q ss_pred             hhhhhHHHHHHHhhhcCCCCh----HhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDP----LLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~----LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|+++|..+|+|+    .++.+.|..++ ..+|+++|.+||
T Consensus        23 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~   70 (406)
T 3sf4_A           23 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYH   70 (406)
T ss_dssp             TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH-HhcCHHHHHHHH
Confidence            467788899999999999986    45566676554 578999998876

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=81.37  E-value=0.78  Score=34.32  Aligned_cols=45  Identities=9%  Similarity=0.180  Sum_probs=31.6

Q ss_pred             chhhhhHHHHHHHhhhcCCCC------hHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          413 YADYFRTELLYQTGLAQEPND------PLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N------~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      -.+++.+..+|++++...+..      +..+.|.|..+. -.+|+++|.+||
T Consensus        62 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~  112 (164)
T 3ro3_A           62 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT-LLQDYEKAIDYH  112 (164)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH-HHhhHHHHHHHH
Confidence            346778888888888765543      456667776554 478888888876

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=81.36  E-value=1.2  Score=44.53  Aligned_cols=49  Identities=12%  Similarity=0.110  Sum_probs=39.9

Q ss_pred             ccchhhhhHHHHHHHhhh-----cCCCChHhHhHHHH--HHHHHhhhHHHhhcccC
Q 012648          411 DDYADYFRTELLYQTGLA-----QEPNDPLLLANYAQ--FLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       411 dd~~~~~rtE~~Yk~~I~-----~dP~N~LlL~NYAq--FL~~V~~D~drAEeYyk  459 (459)
                      .++.+|+.++.+|+++|+     ..|+||.++.-|..  -+|.-+++|++|++||+
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~  364 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQ  364 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence            467789999999999998     47999988765543  35667899999999984

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=81.27  E-value=1.2  Score=37.91  Aligned_cols=44  Identities=7%  Similarity=-0.029  Sum_probs=30.8

Q ss_pred             hhhhhHHHHHHHhhhcCCCChH---hHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPL---LLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~L---lL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+|+.+..+|+++|..+|+++.   .+-+-|..+ .-.+|+++|.++|
T Consensus        18 g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~-~~~~~~~~A~~~~   64 (225)
T 2yhc_A           18 GNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAY-YKNADLPLAQAAI   64 (225)
T ss_dssp             TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH-HHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH-HhcCCHHHHHHHH
Confidence            5677788888888888887763   455555444 4477888887776

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=81.19  E-value=1.8  Score=33.66  Aligned_cols=35  Identities=29%  Similarity=0.326  Sum_probs=29.2

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHh
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVA  448 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~  448 (459)
                      .+++.+-.+|++++..+|+|+-.+.|++.|-...+
T Consensus        60 g~~~~A~~~~~~al~l~P~~~~~~~n~~~~~~~~~   94 (104)
T 2v5f_A           60 GDLDKALLLTKKLLELDPEHQRANGNLKYFEYIMA   94 (104)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHHHH
Confidence            45788999999999999999999999985544433

>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*

Probab=81.09  E-value=0.84  Score=44.54  Aligned_cols=40  Identities=28%  Similarity=0.438  Sum_probs=34.1

Q ss_pred             hhHHHHHHHhhh-----c--CCCChHhHh---HHHHHHHHHhhhHHHhhc
Q 012648          417 FRTELLYQTGLA-----Q--EPNDPLLLA---NYAQFLYIVAHDYDRYLN  456 (459)
Q Consensus       417 ~rtE~~Yk~~I~-----~--dP~N~LlL~---NYAqFL~~V~~D~drAEe  456 (459)
                      +++...||.|++     .  .|.||+-|+   ||+-|+|++.+|.++|-+
T Consensus       169 e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~  218 (268)
T 3efz_A          169 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMK  218 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            457788998874     3  799999887   999999999999999854

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=80.92  E-value=0.6  Score=41.34  Aligned_cols=45  Identities=22%  Similarity=0.200  Sum_probs=35.2

Q ss_pred             hhhhhHHHHHHHhhh-------cCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLA-------QEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~-------~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+|+.+..||+++|.       ..|..+.++.|+|..++. .+||++|.+||+
T Consensus       169 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~-~~~y~~A~~~~~  220 (293)
T 3u3w_A          169 GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL-DSRYEESLYQVN  220 (293)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH-HhHHHHHHHHHH
Confidence            368899999999994       333445577899987765 899999999873

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=80.65  E-value=1.2  Score=44.51  Aligned_cols=43  Identities=9%  Similarity=-0.001  Sum_probs=37.4

Q ss_pred             hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      ...|+...|+++|...|.++-+.-+||+|+.. .+|.++|-+.|
T Consensus       194 ~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~-~~~~~~ar~i~  236 (493)
T 2uy1_A          194 HESRMHFIHNYILDSFYYAEEVYFFYSEYLIG-IGQKEKAKKVV  236 (493)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            35678899999999999999999999999954 78999987765

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=80.20  E-value=1.2  Score=39.63  Aligned_cols=48  Identities=10%  Similarity=0.065  Sum_probs=38.9

Q ss_pred             ccchhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhh---------hHHHhhccc
Q 012648          411 DDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAH---------DYDRYLNFL  458 (459)
Q Consensus       411 dd~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~---------D~drAEeYy  458 (459)
                      +....|+.+-..|+++|+.+|+|+-.+-|++.-|.+..+         .++.|..+|
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~l   69 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKF   69 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHH
Confidence            344567788899999999999999999999997776543         367887776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	459
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	96.99
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	96.23
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	95.79
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	95.77
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	95.56
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	95.23
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	95.08
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	94.36
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	94.35
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	94.19
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	94.18
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	93.86
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	93.75
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	93.64
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	93.58
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	93.11
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	92.71
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	92.69
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	92.44
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	92.27
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	92.14
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	91.54
d3efza1	223	14-3-3 protein cgd1_2980 {Cryptosporidium parvum [	91.36
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	91.18
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	90.93
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	90.35
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	90.08
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	89.58
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	87.55
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	86.79
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	86.77
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	86.62
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	85.89
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	85.82
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	85.68
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	85.16
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	84.13
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	80.68
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	80.16

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00014  Score=58.35  Aligned_cols=46  Identities=20%  Similarity=0.156  Sum_probs=39.8

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHH--hhhHHHhhccc
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIV--AHDYDRYLNFL  458 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V--~~D~drAEeYy  458 (459)
                      -.++.++++.|+++|..+|+++-.+-|||.+|...  .+|+++|.++|
T Consensus        12 ~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l   59 (122)
T d1nzna_          12 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLL   59 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            35788999999999999999999999999999643  46888888776

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.23  E-value=0.0015  Score=51.84  Aligned_cols=44  Identities=14%  Similarity=0.158  Sum_probs=33.4

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+|+.+..+|+++|+.+|+|+-++.|.|..+ .-.+|++.|.++|
T Consensus        18 g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y-~~~~~~~~Ai~~~   61 (201)
T d2c2la1          18 RKYPEAAACYGRAITRNPLVAVYYTNRALCY-LKMQQPEQALADC   61 (201)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH-HHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHH-hhhhhhhhhhHHH
Confidence            4677778888888888888888888887764 5577788887776

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0043  Score=48.53  Aligned_cols=44  Identities=16%  Similarity=0.289  Sum_probs=40.2

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+|+.+..+|+++|+.+|+|+..+.|.|.-+.. .+|++.|.++|
T Consensus        18 ~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~   61 (128)
T d1elra_          18 KDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELC   61 (128)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHH-cCchHHHHHHH
Confidence            568999999999999999999999999998866 68999999887

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.003  Score=50.31  Aligned_cols=45  Identities=16%  Similarity=0.191  Sum_probs=32.9

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      -.+|..+..+|+++|..||+|+..+.|+|..+... ++++.|.++|
T Consensus        23 ~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~   67 (159)
T d1a17a_          23 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-ECYGYALGDA   67 (159)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             cCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhc-cccchHHHHH
Confidence            34567777777777777887777777777776664 6777777766

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.006  Score=46.96  Aligned_cols=44  Identities=14%  Similarity=0.164  Sum_probs=32.9

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      ..|+.+..+|+++|..+|+|+.++.|.|.-+. -.+|++.|.++|
T Consensus        17 g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~   60 (117)
T d1elwa_          17 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDG   60 (117)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCcchhhhhccccccc-ccccccccchhh
Confidence            45667778888888888888888888887554 467888887776

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.23  E-value=0.0071  Score=48.72  Aligned_cols=44  Identities=9%  Similarity=0.027  Sum_probs=37.6

Q ss_pred             hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHH---------HhhhHHHhhccc
Q 012648          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYI---------VAHDYDRYLNFL  458 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~---------V~~D~drAEeYy  458 (459)
                      .|+.+...|+++|+.||+|+-.|.|++.-|..         -.+++++|.++|
T Consensus        12 ~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~   64 (145)
T d1zu2a1          12 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKF   64 (145)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence            47889999999999999999999999998874         345667787776

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=95.08  E-value=0.0077  Score=49.18  Aligned_cols=46  Identities=15%  Similarity=0.187  Sum_probs=38.6

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      -..|+.+..+|+++|..+|+|+..+.|.|.-+ .-.+|++.|.++|+
T Consensus        50 ~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~-~~~g~~~~A~~~~~   95 (259)
T d1xnfa_          50 LGLRALARNDFSQALAIRPDMPEVFNYLGIYL-TQAGNFDAAYEAFD   95 (259)
T ss_dssp             TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhhccCCCCHHHHhhhchHH-HHHHHHHHhhhhhh
Confidence            35778899999999999999999999988754 66889999998873

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.014  Score=48.62  Aligned_cols=45  Identities=11%  Similarity=0.201  Sum_probs=39.3

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      -.+|+.+..+|+++|+.||+++..+-|.|.-+++ .+|++.|.++|
T Consensus        49 ~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~-~g~~~~A~~~~   93 (192)
T d1hh8a_          49 LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TEKYDLAIKDL   93 (192)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             cCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh-hccHHHHHHHH
Confidence            3568889999999999999999999999988755 78888887766

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.35  E-value=0.017  Score=44.17  Aligned_cols=46  Identities=15%  Similarity=0.005  Sum_probs=39.3

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      -..++.+..+|+++|+.+|+|+-.+-|.|..+.. .+|++.|.++|+
T Consensus        63 ~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~-~g~~~~A~~~l~  108 (112)
T d1hxia_          63 NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-EHNANAALASLR  108 (112)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             hhhHHHhhcccccccccccccccchHHHHHHHHH-CCCHHHHHHHHH
Confidence            3467789999999999999999999999887755 789999998873

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.19  E-value=0.017  Score=45.49  Aligned_cols=45  Identities=11%  Similarity=-0.042  Sum_probs=40.1

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+|+.+..+|+++|..+|+|+-.+-|.|.-+.. .++++.|.++|+
T Consensus        52 ~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~-l~~~~~A~~~~~   96 (201)
T d2c2la1          52 QQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESYDEAIANLQ   96 (201)
T ss_dssp             TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCHHHHHHHHH
Confidence            467899999999999999999999999998866 689999998873

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.012  Score=48.69  Aligned_cols=45  Identities=18%  Similarity=0.115  Sum_probs=39.5

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+++.+..+|+++|+.+|+|+-.+-|.|+.++. .+|++.|.++|+
T Consensus       319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~  363 (388)
T d1w3ba_         319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-QGKLQEALMHYK  363 (388)
T ss_dssp             TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT-TTCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            467889999999999999999999999987755 789999998873

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.86  E-value=0.028  Score=43.02  Aligned_cols=46  Identities=9%  Similarity=-0.064  Sum_probs=40.3

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      -.++..+..+|+++|..+|+|+-.+-|.|.- +.-.++++.|.++|+
T Consensus        50 ~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~-~~~~~~~~~A~~~~~   95 (117)
T d1elwa_          50 KGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA-LEFLNRFEEAKRTYE   95 (117)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHH
T ss_pred             cccccccchhhhhHHHhccchhhHHHHHHHH-HHHccCHHHHHHHHH
Confidence            4567789999999999999999999999994 566899999998873

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.75  E-value=0.023  Score=46.32  Aligned_cols=45  Identities=9%  Similarity=0.045  Sum_probs=35.5

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      ..|+.+..+|+++|..||+|+-.+-+-|+.++ -.+++++|.++|+
T Consensus        76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~-~~g~~~~A~~~~~  120 (170)
T d1p5qa1          76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHL-AVNDFELARADFQ  120 (170)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred             hhcccccchhhhhhhccccchhhhHHHHHHHH-HhhhHHHHHHHHH
Confidence            45788888888888888888888888776655 4778888888773

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=93.64  E-value=0.026  Score=43.06  Aligned_cols=46  Identities=11%  Similarity=0.041  Sum_probs=40.6

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      -.++..+..+|+++|..+|+|+..+.+.|..+ .-.++++.|+.+|+
T Consensus        29 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~-~~~~~~~~A~~~~~   74 (112)
T d1hxia_          29 LANLAEAALAFEAVCQKEPEREEAWRSLGLTQ-AENEKDGLAIIALN   74 (112)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-HHTTCHHHHHHHHH
T ss_pred             HhhhHHHHHHHhhhcccccccchhhhhhhhhh-hhhhhHHHhhcccc
Confidence            35678899999999999999999999999976 66789999999873

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.58  E-value=0.026  Score=44.65  Aligned_cols=44  Identities=7%  Similarity=-0.234  Sum_probs=38.0

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .++..+..+|+++|+.+|+++-.+-|+|..++. .+|++.|.++|
T Consensus        58 ~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~-~g~~~eA~~~~  101 (159)
T d1a17a_          58 ECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKFRAALRDY  101 (159)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHcccchHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            467778999999999999999999999998865 77899998876

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.11  E-value=0.033  Score=46.80  Aligned_cols=45  Identities=9%  Similarity=-0.079  Sum_probs=37.7

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      ..++.+..+|+++|+.+|+|+-.+-|.|..++. .++++.|.++|+
T Consensus       220 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~  264 (323)
T d1fcha_         220 NQSEEAVAAYRRALELQPGYIRSRYNLGISCIN-LGAHREAVEHFL  264 (323)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHhhccHHHHHHHHHHHHH-CCCHHHHHHHHH
Confidence            456778899999999999999999999987766 678999988873

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.71  E-value=0.052  Score=44.68  Aligned_cols=44  Identities=9%  Similarity=0.033  Sum_probs=39.3

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+++.+..+|+++|+.+|+|+..+.+.|..+.. .+|++.|.++|
T Consensus        47 ~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~-~g~~~~A~~~~   90 (388)
T d1w3ba_          47 RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE-RGQLQEAIEHY   90 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhh-hcccccccccc
Confidence            567889999999999999999999999988765 78999998876

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.69  E-value=0.056  Score=40.27  Aligned_cols=34  Identities=26%  Similarity=0.312  Sum_probs=30.0

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHH
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIV  447 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V  447 (459)
                      .+++++-.+|+++|+.||+|+-.+.|.+.|-...
T Consensus        60 g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          60 GDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            4789999999999999999999999998776543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.44  E-value=0.058  Score=45.26  Aligned_cols=43  Identities=12%  Similarity=0.008  Sum_probs=21.7

Q ss_pred             hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      +++.+..+|+++|+.+|+|+..+.|.|..+.. .++++.|.++|
T Consensus        68 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~  110 (323)
T d1fcha_          68 QELLAISALRRCLELKPDNQTALMALAVSFTN-ESLQRQACEIL  110 (323)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             ChHHHHHHHHhhhccccccccccccccccccc-cccccccccch
Confidence            34445555555555555555555555554433 44555555443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.27  E-value=0.019  Score=49.89  Aligned_cols=44  Identities=14%  Similarity=0.185  Sum_probs=33.0

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .+.+++...|++++..+|.|+.+.-+|++|+.. .+|+++|..+|
T Consensus       183 ~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~-~g~~~~aR~~f  226 (308)
T d2onda1         183 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LNEDNNTRVLF  226 (308)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-cCChHHHHHHH
Confidence            455667777888888888888888888888765 56788777766

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.14  E-value=0.056  Score=48.68  Aligned_cols=41  Identities=20%  Similarity=0.446  Sum_probs=35.5

Q ss_pred             hhhHHHHHHHhhh-----cCCCChHhHh---HHHHHHHHHhhhHHHhhc
Q 012648          416 YFRTELLYQTGLA-----QEPNDPLLLA---NYAQFLYIVAHDYDRYLN  456 (459)
Q Consensus       416 ~~rtE~~Yk~~I~-----~dP~N~LlL~---NYAqFL~~V~~D~drAEe  456 (459)
                      ..++...|++|++     ..|.||+-|+   ||+-|+|++.+|.++|-+
T Consensus       142 ~~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~  190 (230)
T d2o02a1         142 VDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACS  190 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHH
Confidence            3468889999884     4899999887   999999999999999865

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.54  E-value=0.064  Score=42.90  Aligned_cols=47  Identities=11%  Similarity=0.102  Sum_probs=38.3

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHH----------hhhHHHhhcccC
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIV----------AHDYDRYLNFLS  459 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V----------~~D~drAEeYyk  459 (459)
                      ...++.+..+|+++|+.||+|+-.+-|-+.-+.+.          ..++++|.++|+
T Consensus        54 ~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~  110 (145)
T d1zu2a1          54 KQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQ  110 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhh
Confidence            45667899999999999999999999998877643          456788887763

>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 protein cgd1 2980
species: Cryptosporidium parvum [TaxId: 5807]

Probab=91.36  E-value=0.04  Score=50.00  Aligned_cols=41  Identities=29%  Similarity=0.509  Sum_probs=34.2

Q ss_pred             hhHHHHHHHhhhc-------CCCChHhHh---HHHHHHHHHhhhHHHhhcc
Q 012648          417 FRTELLYQTGLAQ-------EPNDPLLLA---NYAQFLYIVAHDYDRYLNF  457 (459)
Q Consensus       417 ~rtE~~Yk~~I~~-------dP~N~LlL~---NYAqFL~~V~~D~drAEeY  457 (459)
                      .++...|++|++.       .|.||+.|+   ||+-|+|++.+|.++|-+.
T Consensus       124 ~~a~~aY~~A~~~a~~~l~l~pt~PirLGLaLN~SVF~YEi~~~~~~A~~l  174 (223)
T d3efza1         124 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKF  174 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhccCccCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4578889998643       399999887   9999999999999998653

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=91.18  E-value=0.067  Score=48.38  Aligned_cols=42  Identities=26%  Similarity=0.392  Sum_probs=36.1

Q ss_pred             hhhhHHHHHHHhhh-----cCCCChHhHh---HHHHHHHHHhhhHHHhhc
Q 012648          415 DYFRTELLYQTGLA-----QEPNDPLLLA---NYAQFLYIVAHDYDRYLN  456 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~-----~dP~N~LlL~---NYAqFL~~V~~D~drAEe  456 (459)
                      --.++...|++|++     ..|.||+-|+   ||+-|+|++.+|.++|-+
T Consensus       146 ~~~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~  195 (236)
T d1o9da_         146 AAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACN  195 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHH
Confidence            34567889999874     5899999887   999999999999999865

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=90.93  E-value=0.082  Score=42.83  Aligned_cols=45  Identities=13%  Similarity=0.043  Sum_probs=39.2

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      ..++.+..+|+++|..+|+|+-.+.|.|..++. .++++.|.++|+
T Consensus        85 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~  129 (259)
T d1xnfa_          85 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRDKLAQDDLL  129 (259)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             HHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH-HhhHHHHHHHHH
Confidence            456779999999999999999999999988765 688999998873

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=90.35  E-value=0.11  Score=41.42  Aligned_cols=45  Identities=13%  Similarity=-0.083  Sum_probs=38.7

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+|..+-.+|+++|+.||+|.-.+-|-|+-++. .+|++.|.++|+
T Consensus        81 ~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~-lg~~~~A~~~~~  125 (153)
T d2fbna1          81 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMY-FGFLEEAKENLY  125 (153)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-HTCHHHHHHHHH
T ss_pred             cccchhhhhhhccccccchhhhhhHHhHHHHHH-cCCHHHHHHHHH
Confidence            467888999999999999999999999998866 679999988873

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.08  E-value=0.11  Score=41.36  Aligned_cols=45  Identities=22%  Similarity=0.150  Sum_probs=38.1

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .+|+.+-.+|+++|+.+|+|+..+-|-|.=+.. .++++.|.++|+
T Consensus        91 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~-l~~~~~A~~~~~  135 (169)
T d1ihga1          91 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG-LKEYDQALADLK  135 (169)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhhhhhhhHHHhHHHHHHH-ccCHHHHHHHHH
Confidence            467888999999999999999999998887766 588999988773

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=89.58  E-value=0.16  Score=40.71  Aligned_cols=45  Identities=7%  Similarity=0.108  Sum_probs=34.9

Q ss_pred             chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      -.+|+.+-.+|+++|..||+|+-.+-|.|+.+ ...+++++|.++|
T Consensus        77 l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~-~~l~~~~~A~~~~  121 (168)
T d1kt1a1          77 LREYTKAVECCDKALGLDSANEKGLYRRGEAQ-LLMNEFESAKGDF  121 (168)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHH
T ss_pred             hhhcccchhhhhhhhhcccchHHHHHHHHHHH-HHcCCHHHHHHHH
Confidence            34667788888888888888888888888765 4467788888776

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.55  E-value=0.13  Score=38.11  Aligned_cols=47  Identities=26%  Similarity=0.285  Sum_probs=35.8

Q ss_pred             cchhhhhHHHHHHHhhhcCCCC-------hHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          412 DYADYFRTELLYQTGLAQEPND-------PLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       412 d~~~~~rtE~~Yk~~I~~dP~N-------~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      +-.+|..+..+|+++|..+|++       +-+|.|-|.-+ .-.+|+++|.+||+
T Consensus        17 ~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~-~~~g~~~~A~~~y~   70 (95)
T d1tjca_          17 TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAV-YQQGDLDKALLLTK   70 (95)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHH-HHTTCHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHH-HhcCChHHHHHHHH
Confidence            3467899999999999987766       34566655544 44789999999884

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=86.79  E-value=0.35  Score=38.72  Aligned_cols=47  Identities=13%  Similarity=0.108  Sum_probs=36.0

Q ss_pred             cchhhhhHHHHHHHhhhcCCCChH-----hHhHHHHHHHHHhhhHHHhhcccC
Q 012648          412 DYADYFRTELLYQTGLAQEPNDPL-----LLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       412 d~~~~~rtE~~Yk~~I~~dP~N~L-----lL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .-.+++++..+|+++|+.+|.|+.     .+.+.+.. +...+|+++|.++|+
T Consensus        24 ~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~-~~~~g~~~~A~~~~~   75 (366)
T d1hz4a_          24 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEV-LHCKGELTRSLALMQ   75 (366)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHH-HHHHTCHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHH-HHHCCCHHHHHHHHH
Confidence            345788999999999999998753     45555544 456899999998873

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.77  E-value=0.18  Score=39.60  Aligned_cols=51  Identities=12%  Similarity=0.169  Sum_probs=38.8

Q ss_pred             cCcccchhhhhHHHHHHHhhhcCCCChH--hHhHHHHHHHHHhhhHHHhhcccC
Q 012648          408 IEADDYADYFRTELLYQTGLAQEPNDPL--LLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       408 lE~dd~~~~~rtE~~Yk~~I~~dP~N~L--lL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      +...+..++.++-.+|+++|..+|++.-  .|-|-| +.|.-.+|+++|.+||+
T Consensus        44 ~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg-~~y~~~g~~~~A~~~~~   96 (122)
T d1nzna_          44 VRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA-VGNYRLKEYEKALKYVR   96 (122)
T ss_dssp             TTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHH
T ss_pred             HHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH-HHHHHHhhhHHHHHHHH
Confidence            3456677888899999999999987743  565665 55566899999999873

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.62  E-value=0.21  Score=43.06  Aligned_cols=46  Identities=7%  Similarity=0.122  Sum_probs=41.1

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      .++.++...|++++...|+++-++-+||.+.+...+|.++|...|+
T Consensus       148 ~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e  193 (308)
T d2onda1         148 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFE  193 (308)
T ss_dssp             HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            4567788999999999999999999999999999999999987763

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.89  E-value=0.27  Score=46.17  Aligned_cols=44  Identities=11%  Similarity=0.062  Sum_probs=38.8

Q ss_pred             hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS  459 (459)
Q Consensus       415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk  459 (459)
                      +|+.+..||++++..+|+|+..+-|-|.... -++|+..|..||.
T Consensus       167 ~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~-~~~~~~~A~~~y~  210 (497)
T d1ya0a1         167 QTSQAESYYRHAAQLVPSNGQPYNQLAILAS-SKGDHLTTIFYYC  210 (497)
T ss_dssp             CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence            5788999999999999999999999988664 5899999998873

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.82  E-value=0.28  Score=43.18  Aligned_cols=42  Identities=10%  Similarity=0.112  Sum_probs=27.7

Q ss_pred             hhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          416 YFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       416 ~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      +..+-.+|+++|..+|+|+-.+-|-+..+ .-.+++++|.++|
T Consensus        94 ~~eal~~~~~al~~~p~~~~a~~~~~~~~-~~l~~~~eAl~~~  135 (315)
T d2h6fa1          94 LHEEMNYITAIIEEQPKNYQVWHHRRVLV-EWLRDPSQELEFI  135 (315)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTCCTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHhHHH-HhhccHHHHHHHH
Confidence            45566677777777777777777766544 4466777777665

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=85.68  E-value=0.18  Score=45.32  Aligned_cols=40  Identities=18%  Similarity=0.148  Sum_probs=33.8

Q ss_pred             hhHHHHHHHhhh-----cCCCChHhHh---HHHHHHHHHhhhHHHhhc
Q 012648          417 FRTELLYQTGLA-----QEPNDPLLLA---NYAQFLYIVAHDYDRYLN  456 (459)
Q Consensus       417 ~rtE~~Yk~~I~-----~dP~N~LlL~---NYAqFL~~V~~D~drAEe  456 (459)
                      ..+...|++|.+     ..|.||+-|+   ||+-|+|++.+|.++|-+
T Consensus       140 ~~a~~aY~~A~~ia~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~  187 (220)
T d2o8pa1         140 EDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFN  187 (220)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHH
Confidence            457788888875     3599999887   999999999999999865

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.16  E-value=0.16  Score=39.16  Aligned_cols=45  Identities=16%  Similarity=0.270  Sum_probs=38.4

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHH------HHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFL------YIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL------~~V~~D~drAEeYy  458 (459)
                      .+|+.+..+|+++|+.+|+++-.+-++|+.+      +.-.++++.|.+||
T Consensus        52 ~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~  102 (128)
T d1elra_          52 GDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFY  102 (128)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            5788899999999999999998888888754      55668899998887

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.13  E-value=0.43  Score=38.38  Aligned_cols=40  Identities=15%  Similarity=0.086  Sum_probs=33.1

Q ss_pred             cchhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhH
Q 012648          412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDY  451 (459)
Q Consensus       412 d~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~  451 (459)
                      .-.+|+.+..+|+++++.||+|+.++.++++-...+..-.
T Consensus       108 ~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  147 (170)
T d1p5qa1         108 AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL  147 (170)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            3457889999999999999999999999998766555443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.68  E-value=1.1  Score=35.40  Aligned_cols=39  Identities=13%  Similarity=0.123  Sum_probs=31.9

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHH
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYD  452 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~d  452 (459)
                      ..|..+...|+++|+.+|+|+.+..++++....++...+
T Consensus       125 ~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~  163 (169)
T d1ihga1         125 KEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD  163 (169)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            357889999999999999999999999887665554433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.16  E-value=0.42  Score=41.95  Aligned_cols=44  Identities=11%  Similarity=0.027  Sum_probs=33.4

Q ss_pred             hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL  458 (459)
Q Consensus       414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy  458 (459)
                      .++..+-.+|+++|+.||+|...+.|.+..+.. .++++.|.++|
T Consensus       126 ~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~-~~~~~~Al~~~  169 (315)
T d2h6fa1         126 RDPSQELEFIADILNQDAKNYHAWQHRQWVIQE-FKLWDNELQYV  169 (315)
T ss_dssp             TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCTTHHHHH
T ss_pred             ccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHH-HHhhHHHHHHH
Confidence            345667788888888888888888888766654 56778887776