Citrus Sinensis ID: 012687

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
MFLHGTTEANLCRLSLILAKRVSRHNHLRFLSLEIMSTGQNGKVETTPSGSNASARLLSDSHVDGNGLSGNEFYSSRGKNGRNRSRMSKWKVHQSASPSFSNEDFPPLDVNLVSSSKGGHIDKMKTRIDLGPGQKTDIIVSTQLEDSPLSNYVSQHDDSSPSAPLFNKEMKHAHANASPYKRNYFKHELDAKKWDSSHRLHNVEPFDICLSRRRNFRMEKENECRQTVDWTREGILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFRQY
ccccccccccHHHHHHHHHHHHccccccEEEEEEEEEccccccEEEccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccEEEEcccccHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEccccccccccccccccccccccccEEEEcccccEEEEEcccccccccEEEEcccccEEEEccccccccccccccccccccccccccccccccEEEEEcccc
ccccccHHHHHHHHHHHHHHHHHHcccHHEEEEEEEccccccEEEEcccccccHHHHcccccccccccccccEEcccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccccccEEEEEEccccccEccccccccccHHHcccccEEEEEccccEEEEEccccccccccEEEEccccEEEEccccHHHHccccccccccccHHHHHHcccccccEEEEEEcc
mflhgtteANLCRLSLILAKRVSRHNHLRFLSLEIMstgqngkvettpsgsnasarllsdshvdgnglsgnefyssrgkngrnrsrmskwkvhqsaspsfsnedfppldvnlvssskgghidkmktridlgpgqktdIIVStqledsplsnyvsqhddsspsaplfnkemkhahanaspykrnyfkheldakkwdsshrlhnvepfdicLSRRRnfrmekenecrqtvdwtregilrPGMVLLKHYLTIREQILIVRICQelgkgpggfyqpgyndgaKLRLRMMClgldwdpqtrkygkkrqvdgcepsvipsEFKQLVQRSMSEAHALIKMdskvsnvedilpalspdicivnfyntsgrlglhqdrdesryslkkglpvvsfsvgdsaeflygderdaNKAEKVLLEsgdvlifggesrhvfhgvssinpnsapgallentmlrpgrlnltfrqy
mflhgtteanLCRLSLILAKRVSRHNHLRFLSLEIMSTGQNGKVETTPSGSNASARLLSdshvdgnglsgnefyssrgkngrnRSRMSKWKVHQSAspsfsnedfppLDVNLVssskgghidkmktridlgpgqkTDIIVSTQLEDSPLSNYVSQHDDSSPSAPLFNKEMKHAHANASPYKRNYFKHELDAkkwdsshrlhnvepfdiclsrrrnfrmekenecrqtvdwtregilrPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYGKkrqvdgcepsviPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGESRHVFHGVSSINpnsapgallentmlrpgrlnltfrqy
MFLHGTTEANLCRLSLILAKRVSRHNHLRFLSLEIMSTGQNGKVETTPSGSNASARLLSDSHVDGNGLSGNEFYssrgkngrnrsrmsKWKVHQSASPSFSNEDFPPLDVNLVSSSKGGHIDKMKTRIDLGPGQKTDIIVSTQLEDSPLSNYVSQHDDSSPSAPLFNKEMKHAHANASPYKRNYFKHELDAKKWDSSHRLHNVEPFDICLSRRRNFRMEKENECRQTVDWTREGILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFRQY
******TEANLCRLSLILAKRVSRHNHLRFLSLEIM**************************************************************************************************************************************************NYFKHELDAKKWDSSHRLHNVEPFDICLSRRRNFRMEKENECRQTVDWTREGILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDP*******************************************VSNVEDILPALSPDICIVNFYNTSGRLGLHQ*****RYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGESRHVFHGVSS****************************
****G*TEANLCRLSLILAKRVSRHNHLRFLSLEIMS**********************DSHVDGNGLS*******************************************************************************************************************************************************************EGILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFRQY
MFLHGTTEANLCRLSLILAKRVSRHNHLRFLSLEIMSTGQNGKVETTPSGSNASARLLSDSHVDGNGLSGNEFYSS*************************NEDFPPLDVNLVSSSKGGHIDKMKTRIDLGPGQKTDIIVSTQLEDS**************SAPLFNKEMKHAHANASPYKRNYFKHELDAKKWDSSHRLHNVEPFDICLSRRRNFRMEKENECRQTVDWTREGILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRK*********CEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFRQY
*FLHGTTEANLCRLSLILAKRVSRHNHLRFLSLEIMSTGQNGKVET*******************NGLS*******************KW***************************************************************************************************************NVEPFDICLSRRRNFRMEKENECRQTVDWTREGILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFRQY
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFLHGTTEANLCRLSLILAKRVSRHNHLRFLSLEIMSTGQNGKVETTPSGSNASARLLSDSHVDGNGLSGNEFYSSRGKNGRNRSRMSKWKVHQSASPSFSNEDFPPLDVNLVSSSKGGHIDKMKTRIDLGPGQKTDIIVSTQLEDSPLSNYVSQHDDSSPSAPLFNKEMKHAHANASPYKRNYFKHELDAKKWDSSHRLHNVEPFDICLSRRRNFRMEKENECRQTVDWTREGILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFRQY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query458 2.2.26 [Sep-21-2011]
P37462216 Alpha-ketoglutarate-depen yes no 0.220 0.467 0.383 2e-14
P05050216 Alpha-ketoglutarate-depen N/A no 0.283 0.601 0.319 3e-14
P0CAT7220 Alpha-ketoglutarate-depen yes no 0.406 0.845 0.299 9e-14
B8GWW6220 Alpha-ketoglutarate-depen yes no 0.406 0.845 0.299 9e-14
O60066302 Alpha-ketoglutarate-depen yes no 0.336 0.509 0.291 4e-12
Q9SA98345 Alpha-ketoglutarate-depen no no 0.336 0.446 0.295 4e-09
Q13686389 Alkylated DNA repair prot yes no 0.220 0.259 0.303 1e-07
Q54N08393 Alpha-ketoglutarate-depen yes no 0.244 0.284 0.305 2e-07
P0CB42389 Alkylated DNA repair prot yes no 0.220 0.259 0.303 2e-07
>sp|P37462|ALKB_SALTY Alpha-ketoglutarate-dependent dioxygenase AlkB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=alkB PE=3 SV=2 Back     alignment and function desciption
 Score = 80.9 bits (198), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 64/112 (57%), Gaps = 11/112 (9%)

Query: 346 ALSPDICIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAE 405
           +  PD C++N Y    +L LHQD+DE    L+   P+VS S+G  A F +G  R ++  +
Sbjct: 111 SFQPDACLINRYAPGAKLSLHQDKDEP--DLRA--PIVSVSLGVPAVFQFGGLRRSDPIQ 166

Query: 406 KVLLESGDVLIFGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFRQ 457
           ++LLE GD++++GGESR  +HG+  +     P       M    R NLTFRQ
Sbjct: 167 RILLEHGDIVVWGGESRLFYHGIQPLKAGFHP-------MTGEFRYNLTFRQ 211
Dioxygenase that repairs alkylated DNA and RNA containing 3-methylcytosine or 1-methyladenine by oxidative demethylation. Has highest activity towards 3-methylcytosine. Has lower activity towards alkylated DNA containing ethenoadenine, and no detectable activity towards 1-methylguanine or 3-methylthymine. Accepts double-stranded and single-stranded substrates. Requires molecular oxygen, alpha-ketoglutarate and iron. Provides extensive resistance to alkylating agents such as MMS and DMS (SN2 agents), but not to MMNG and MNU (SN1 agents).
Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|P05050|ALKB_ECOLI Alpha-ketoglutarate-dependent dioxygenase AlkB OS=Escherichia coli (strain K12) GN=alkB PE=1 SV=1 Back     alignment and function description
>sp|P0CAT7|ALKB_CAUCR Alpha-ketoglutarate-dependent dioxygenase AlkB homolog OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=alkB PE=3 SV=1 Back     alignment and function description
>sp|B8GWW6|ALKB_CAUCN Alpha-ketoglutarate-dependent dioxygenase AlkB homolog OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=alkB PE=3 SV=2 Back     alignment and function description
>sp|O60066|ALKBH_SCHPO Alpha-ketoglutarate-dependent dioxygenase abh1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=abh1 PE=2 SV=3 Back     alignment and function description
>sp|Q9SA98|ALKBH_ARATH Alpha-ketoglutarate-dependent dioxygenase alkB OS=Arabidopsis thaliana GN=At1g11780 PE=2 SV=2 Back     alignment and function description
>sp|Q13686|ALKB1_HUMAN Alkylated DNA repair protein alkB homolog 1 OS=Homo sapiens GN=ALKBH1 PE=1 SV=2 Back     alignment and function description
>sp|Q54N08|ALKB_DICDI Alpha-ketoglutarate-dependent dioxygenase alkB OS=Dictyostelium discoideum GN=alkB PE=2 SV=1 Back     alignment and function description
>sp|P0CB42|ALKB1_MOUSE Alkylated DNA repair protein alkB homolog 1 OS=Mus musculus GN=Alkbh1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query458
356495097447 PREDICTED: uncharacterized protein LOC10 0.663 0.680 0.591 9e-99
449464420444 PREDICTED: uncharacterized protein LOC10 0.543 0.560 0.683 3e-95
449510843444 PREDICTED: uncharacterized LOC101210053 0.543 0.560 0.683 1e-94
225439617456 PREDICTED: uncharacterized protein LOC10 0.637 0.640 0.574 3e-93
297735575554 unnamed protein product [Vitis vinifera] 0.637 0.527 0.574 5e-93
357470119437 Alpha-ketoglutarate-dependent dioxygenas 0.563 0.590 0.627 2e-91
224140571236 predicted protein [Populus trichocarpa] 0.478 0.927 0.685 4e-89
359481179482 PREDICTED: uncharacterized protein LOC10 0.637 0.605 0.527 5e-89
255576587465 conserved hypothetical protein [Ricinus 0.622 0.612 0.543 1e-86
224070999322 predicted protein [Populus trichocarpa] 0.558 0.795 0.578 2e-85
>gi|356495097|ref|XP_003516417.1| PREDICTED: uncharacterized protein LOC100818496 [Glycine max] Back     alignment and taxonomy information
 Score =  367 bits (941), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 185/313 (59%), Positives = 228/313 (72%), Gaps = 9/313 (2%)

Query: 154 SQHDDSSPSAPLFNKEMKHAHANASPYKRNYFKHELDAKKWDSSHRLHNVEPFDICLSRR 213
           S  D+  P    F K+ K A  N      N   ++    K D+S      +PFDIC S R
Sbjct: 136 SNFDNELPQGSNFWKK-KPASVNRPYNSPNNSNYDAVGNKLDASVGSPMSKPFDICFSGR 194

Query: 214 RNFRM-------EKENECRQTVDW-TREGILRPGMVLLKHYLTIREQILIVRICQELGKG 265
           RN  +       + E  C +  +   + GILRPGMVLLK+Y+T+ EQ+ IV++C+ELG G
Sbjct: 195 RNPALIGATLPGDNEKSCIEMQEEKIKGGILRPGMVLLKNYITLDEQVEIVKVCRELGLG 254

Query: 266 PGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMS 325
           PGGFYQPGY +GAKLRL+MMCLG+DW+PQ+ KYGKKR +DG +P  IP  F QLV R++ 
Sbjct: 255 PGGFYQPGYANGAKLRLKMMCLGMDWNPQSYKYGKKRVIDGSKPPSIPYHFSQLVIRAIQ 314

Query: 326 EAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSF 385
           EAH++IK +++V  VED LP+++PDICIVNFY  +G+LGLHQD DESR SL+KGLPVVSF
Sbjct: 315 EAHSIIKKENRVFKVEDELPSMTPDICIVNFYTNNGKLGLHQDNDESRESLRKGLPVVSF 374

Query: 386 SVGDSAEFLYGDERDANKAEKVLLESGDVLIFGGESRHVFHGVSSINPNSAPGALLENTM 445
           S+GDSAEFLYGDER+  KA+ VLLESGDVLIFGGESRHVFHGVSS+ PNSAP  LL +T 
Sbjct: 375 SIGDSAEFLYGDERNVEKADSVLLESGDVLIFGGESRHVFHGVSSVLPNSAPKELLRDTC 434

Query: 446 LRPGRLNLTFRQY 458
           L PGRLNLTFRQY
Sbjct: 435 LCPGRLNLTFRQY 447

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449464420|ref|XP_004149927.1| PREDICTED: uncharacterized protein LOC101210053 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449510843|ref|XP_004163780.1| PREDICTED: uncharacterized LOC101210053 [Cucumis sativus] Back     alignment and taxonomy information
>gi|225439617|ref|XP_002267882.1| PREDICTED: uncharacterized protein LOC100246527 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297735575|emb|CBI18069.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357470119|ref|XP_003605344.1| Alpha-ketoglutarate-dependent dioxygenase alkB-like protein [Medicago truncatula] gi|355506399|gb|AES87541.1| Alpha-ketoglutarate-dependent dioxygenase alkB-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|224140571|ref|XP_002323656.1| predicted protein [Populus trichocarpa] gi|222868286|gb|EEF05417.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359481179|ref|XP_003632586.1| PREDICTED: uncharacterized protein LOC100246527 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255576587|ref|XP_002529184.1| conserved hypothetical protein [Ricinus communis] gi|223531362|gb|EEF33198.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224070999|ref|XP_002303323.1| predicted protein [Populus trichocarpa] gi|222840755|gb|EEE78302.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query458
TAIR|locus:2087452455 AT3G14160 [Arabidopsis thalian 0.489 0.492 0.625 2.7e-75
TIGR_CMR|SPO_0042198 SPO_0042 "alkylated DNA repair 0.216 0.5 0.440 5.5e-17
UNIPROTKB|P37462216 alkB "Alpha-ketoglutarate-depe 0.220 0.467 0.383 1.8e-14
UNIPROTKB|Q4KB70226 alkB "Alkylated DNA repair pro 0.222 0.451 0.362 3e-14
UNIPROTKB|P05050216 alkB [Escherichia coli K-12 (t 0.222 0.472 0.380 2.3e-13
UNIPROTKB|Q880N6228 alkB "DNA alkylation damage re 0.213 0.429 0.376 1e-12
UNIPROTKB|Q0C209216 alkB "Alkylated DNA repair pro 0.211 0.449 0.398 1.3e-12
UNIPROTKB|Q48JG4228 alkB "Alkylated DNA repair pro 0.213 0.429 0.376 2.8e-12
POMBASE|SPBC13G1.04c302 abh1 "alkB homolog/2-OG-Fe(II) 0.227 0.344 0.371 1.1e-09
FB|FBgn0065035332 AlkB "AlkB" [Drosophila melano 0.192 0.265 0.380 5.4e-07
TAIR|locus:2087452 AT3G14160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
 Identities = 140/224 (62%), Positives = 178/224 (79%)

Query:   235 ILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQ 294
             ++RPGMVLLK+YL+I +Q++IV  C+ LG G GGFYQPGY D AKL L+MMCLG +WDP+
Sbjct:   232 VIRPGMVLLKNYLSINDQVMIVNKCRRLGLGEGGFYQPGYRDEAKLHLKMMCLGKNWDPE 291

Query:   295 TRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIV 354
             T +YG+ R  DG     IP+EF Q V++++ E+ +L   +SK +   D +P + PDICIV
Sbjct:   292 TSRYGETRPFDGSTAPRIPAEFNQFVEKAVKESQSLAASNSKQTKGGDEIPFMLPDICIV 351

Query:   355 NFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDV 414
             NFY+++GRLGLHQD+DES  S++KGLPVVSFS+GDSAEFLYGD+RD +KAE + LESGDV
Sbjct:   352 NFYSSTGRLGLHQDKDESENSIRKGLPVVSFSIGDSAEFLYGDQRDEDKAETLTLESGDV 411

Query:   415 LIFGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFRQY 458
             L+FGG SR VFHGV SI  ++AP ALL+ T LRPGRLNLTFRQY
Sbjct:   412 LLFGGRSRKVFHGVRSIRKDTAPKALLQETSLRPGRLNLTFRQY 455
GO:0005634 "nucleus" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TIGR_CMR|SPO_0042 SPO_0042 "alkylated DNA repair protein, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|P37462 alkB "Alpha-ketoglutarate-dependent dioxygenase AlkB" [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (taxid:99287)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KB70 alkB "Alkylated DNA repair protein AlkB" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
UNIPROTKB|P05050 alkB [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q880N6 alkB "DNA alkylation damage repair protein AlkB" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)] Back     alignment and assigned GO terms
UNIPROTKB|Q0C209 alkB "Alkylated DNA repair protein AlkB" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] Back     alignment and assigned GO terms
UNIPROTKB|Q48JG4 alkB "Alkylated DNA repair protein AlkB" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] Back     alignment and assigned GO terms
POMBASE|SPBC13G1.04c abh1 "alkB homolog/2-OG-Fe(II) oxygenase family Abh1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
FB|FBgn0065035 AlkB "AlkB" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query458
pfam13532190 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase su 2e-51
PRK15401213 PRK15401, PRK15401, alpha-ketoglutarate-dependent 2e-25
TIGR00568169 TIGR00568, alkb, DNA alkylation damage repair prot 5e-20
COG3145194 COG3145, AlkB, Alkylated DNA repair protein [DNA r 3e-17
>gnl|CDD|222204 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information 
 Score =  172 bits (437), Expect = 2e-51
 Identities = 74/220 (33%), Positives = 99/220 (45%), Gaps = 32/220 (14%)

Query: 239 GMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMM-CLGLDWDPQTRK 297
           G+VLL  +L+  EQ  ++R           + QP    G  + +RM  C  L W      
Sbjct: 1   GLVLLPGFLSAEEQAALLRELLAEA----PWRQPMTPGGKPMSVRMTNCGPLGWVTDGPG 56

Query: 298 YG-KKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNF 356
           Y      V G      P+   QL +R  + A                 P   P+ C+VNF
Sbjct: 57  YRYSGTPVTGEPWPPFPAVLLQLAERLAAAAG---------------PPGFEPNACLVNF 101

Query: 357 YNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESGDVLI 416
           Y    R+GLHQD+DE       G P+VS S+GD A F +G +   +    + LESGDVL+
Sbjct: 102 YRPGARMGLHQDKDELD----FGAPIVSVSLGDPALFRFGGKTRDDPTIALPLESGDVLV 157

Query: 417 FGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFR 456
            GG SR  +HGV  I P + P        L  GR+NLTFR
Sbjct: 158 MGGPSRLAYHGVPRIKPGTHPL-------LGGGRINLTFR 190

Length = 190
>gnl|CDD|237957 PRK15401, PRK15401, alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>gnl|CDD|129659 TIGR00568, alkb, DNA alkylation damage repair protein AlkB Back     alignment and domain information
>gnl|CDD|225687 COG3145, AlkB, Alkylated DNA repair protein [DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 458
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 100.0
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 100.0
TIGR00568169 alkb DNA alkylation damage repair protein AlkB. Pr 100.0
COG3145194 AlkB Alkylated DNA repair protein [DNA replication 99.97
KOG3200224 consensus Uncharacterized conserved protein [Funct 99.73
KOG4176323 consensus Uncharacterized conserved protein [Funct 99.73
KOG2731378 consensus DNA alkylation damage repair protein [RN 99.67
KOG2731378 consensus DNA alkylation damage repair protein [RN 99.55
KOG3959306 consensus 2-Oxoglutarate- and iron-dependent dioxy 98.85
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 97.56
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 97.09
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 97.01
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.47
PF12933253 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 96.41
TIGR01762288 chlorin-enz chlorinating enzymes. This model repre 94.8
PF09859173 Oxygenase-NA: Oxygenase, catalysing oxidative meth 89.86
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 86.62
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.2e-45  Score=353.06  Aligned_cols=197  Identities=30%  Similarity=0.553  Sum_probs=174.1

Q ss_pred             cccCCceEEECCCCCHHHHHHHHHHHHHhcCCCCCCcCCccCCCceeeeEEEEec-cccCCCC--CcccCcccCCCCCCC
Q 012687          234 GILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLG-LDWDPQT--RKYGKKRQVDGCEPS  310 (458)
Q Consensus       234 ~~l~PGLvLlpnFLS~eEQ~~Li~~l~e~~l~p~~~~qP~~~~G~klklR~v~lG-y~wd~dt--~~Ys~~~p~dg~p~p  310 (458)
                      ..+.||++++++|. .++|++|+++|+++.. ..+|++|.++.|+.|.+||+||| ++|..|.  |+|++.+|..+.+|+
T Consensus        14 ~~~~~g~~~~~~~~-~~~~~~l~~~~~~~~~-~~p~~~~~~~gg~~msv~mt~~G~~~W~~d~~~YrYs~~~~~~~~pwp   91 (213)
T PRK15401         14 EPLAPGAVLLRGFA-LAAAEALLAAIEAVAA-QAPFRHMVTPGGYTMSVAMTNCGALGWVTDRRGYRYSPIDPLTGKPWP   91 (213)
T ss_pred             eecCCCcEEeCCCC-HHHHHHHHHHHHHHHh-cCCccceecCCCCcceeEEeccccceEecCCCCcccCCcCCCCCCCCC
Confidence            57899999999995 8999999999999633 37999999999999999999999 8997655  788877778899999


Q ss_pred             CCcHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCCEEEEeeeCCCCCccccccCccccccccCCCcEEEeecCCc
Q 012687          311 VIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDS  390 (458)
Q Consensus       311 piP~~L~~Lverii~~A~~l~~~~s~~~~~~~~~p~~~pnacLVN~Y~~Gd~IG~H~D~ee~~~sL~~~~PIvSLSLGss  390 (458)
                      +||++|.+|+++++..+               +++.+.||+||||+|++|++||||+|++|.    +++.||||||||++
T Consensus        92 ~~P~~l~~L~~~~~~~~---------------~~~~~~p~a~LvN~Y~~G~~mg~H~D~~E~----~~~~pI~SvSLG~~  152 (213)
T PRK15401         92 AMPASFLALAQRAAAAA---------------GFPGFQPDACLINRYAPGAKLSLHQDKDER----DFRAPIVSVSLGLP  152 (213)
T ss_pred             CchHHHHHHHHHHHHHc---------------CCCCCCCCEEEEEeccCcCccccccCCCcc----cCCCCEEEEeCCCC
Confidence            99999999999876542               446789999999999999999999998764    36789999999999


Q ss_pred             eeeeeecccCCCccEEEEcCCCCEEEecCCcccccccccccCCCCCCCccccccCCCCCeEEEEeecC
Q 012687          391 AEFLYGDERDANKAEKVLLESGDVLIFGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFRQY  458 (458)
Q Consensus       391 avF~fr~~~~~d~~~~V~LesGDLLIM~GeSR~~wHgVp~I~p~t~P~~L~~~~~~r~~RINLTFRqv  458 (458)
                      |+|+|++.++.+++.+|.|+|||||||+|++|++||||+++++.+.|.       ...+|||||||++
T Consensus       153 ~~F~~~~~~~~~~~~~l~L~~Gdllvm~G~sr~~~HgVp~~~~~~~p~-------~g~~RINLTFR~~  213 (213)
T PRK15401        153 AVFQFGGLKRSDPLQRILLEHGDVVVWGGPSRLRYHGILPLKAGEHPL-------TGECRINLTFRKA  213 (213)
T ss_pred             eEEEecccCCCCceEEEEeCCCCEEEECchHhheeccCCcCCCCcCCC-------CCCCeEEEEeEcC
Confidence            999999877777788999999999999999999999999998887762       4668999999985

>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>TIGR00568 alkb DNA alkylation damage repair protein AlkB Back     alignment and domain information
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG3200 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4176 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification] Back     alignment and domain information
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification] Back     alignment and domain information
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only] Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family Back     alignment and domain information
>TIGR01762 chlorin-enz chlorinating enzymes Back     alignment and domain information
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query458
2fd8_A211 Crystal Structure Of Alkb In Complex With Fe(Ii), 2 3e-15
3khb_A219 Crystal Structure Of Escherichia Coli Alkb With Co( 3e-15
3t3y_A206 Crystal Structure Of Alkb In Complex With Fe(Iii) A 3e-15
3o1m_A206 Iron-Catalyzed Oxidation Intermediates Captured In 3e-15
3bi3_A201 X-Ray Structure Of Alkb Protein Bound To Dsdna Cont 4e-15
3bie_A202 X-Ray Structure Of E Coli Alkb Bound To Dsdna Conta 4e-15
3khc_A219 Crystal Structure Of Escherichia Coli Alkb In Compl 2e-14
3bkz_A201 X-Ray Structure Of E Coli Alkb Crosslinked To Dsdna 2e-14
>pdb|2FD8|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Ii), 2-Oxoglutarate, And Methylated Trinucleotide T-Mea-T Length = 211 Back     alignment and structure 
Iteration: 1

 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 77/166 (46%), Gaps = 36/166 (21%)
Query: 292 DPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDI 351
           DPQT K              +P  F  L QR+ + A                 P   PD 
Sbjct: 72  DPQTNK----------PWPAMPQSFHNLCQRAATAAG---------------YPDFQPDA 106
Query: 352 CIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLES 411
           C++N Y    +L LHQD+DE    L+   P+VS S+G  A F +G  +  +  +++LLE 
Sbjct: 107 CLINRYAPGAKLSLHQDKDEP--DLRA--PIVSVSLGLPAIFQFGGLKRNDPLKRLLLEH 162
Query: 412 GDVLIFGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFRQ 457
           GDV+++GGESR  +HG+  +     P       +    R NLTFRQ
Sbjct: 163 GDVVVWGGESRLFYHGIQPLKAGFHP-------LTIDCRYNLTFRQ 201
>pdb|3KHB|A Chain A, Crystal Structure Of Escherichia Coli Alkb With Co(Ii) And 2-Og Length = 219 Back     alignment and structure
>pdb|3T3Y|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Iii) And 2-(3- Hydroxypicolinomido)acetic Acid Length = 206 Back     alignment and structure
>pdb|3O1M|A Chain A, Iron-Catalyzed Oxidation Intermediates Captured In A Dna Repair Dioxygenase Length = 206 Back     alignment and structure
>pdb|3BI3|A Chain A, X-Ray Structure Of Alkb Protein Bound To Dsdna Containing 1meaA WITH Cofactors Length = 201 Back     alignment and structure
>pdb|3BIE|A Chain A, X-Ray Structure Of E Coli Alkb Bound To Dsdna Containing 1meaT WITH Mn And 2kg Length = 202 Back     alignment and structure
>pdb|3KHC|A Chain A, Crystal Structure Of Escherichia Coli Alkb In Complex With Ssdna Containing A 1-Methylguanine Lesion Length = 219 Back     alignment and structure
>pdb|3BKZ|A Chain A, X-Ray Structure Of E Coli Alkb Crosslinked To Dsdna In The Active Site Length = 201 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query458
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 1e-39
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 4e-15
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 4e-07
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Length = 211 Back     alignment and structure
 Score =  140 bits (355), Expect = 1e-39
 Identities = 60/226 (26%), Positives = 91/226 (40%), Gaps = 31/226 (13%)

Query: 236 LRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGL---DWD 292
           L  G V+L+ +        ++R   ++      F Q     G  + + M   G       
Sbjct: 5   LAAGAVILRRFAF-NAAEQLIRDINDVA-SQSPFRQMVTPGGYTMSVAMTNCGHLGWTTH 62

Query: 293 PQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDIC 352
            Q   Y             +P  F  L QR+ + A                 P   PD C
Sbjct: 63  RQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAG---------------YPDFQPDAC 107

Query: 353 IVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESG 412
           ++N Y    +L LHQD+DE         P+VS S+G  A F +G  +  +  +++LLE G
Sbjct: 108 LINRYAPGAKLSLHQDKDEPDL----RAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHG 163

Query: 413 DVLIFGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFRQY 458
           DV+++GGESR  +HG+  +     P       +    R NLTFRQ 
Sbjct: 164 DVVVWGGESRLFYHGIQPLKAGFHP-------LTIDCRYNLTFRQA 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Length = 345 Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Length = 238 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Length = 204 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query458
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 100.0
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 100.0
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 100.0
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 100.0
3lfm_A 495 Protein FTO; FAT MASS and obesity associated (FTO) 98.26
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 96.09
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 95.98
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 95.31
2a1x_A308 Phytanoyl-COA dioxygenase; beta jelly roll, double 94.27
2rdq_A288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II 93.57
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 92.28
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 92.25
2fct_A313 Syringomycin biosynthesis enzyme 2; mononuclear ir 91.41
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
Probab=100.00  E-value=2.4e-41  Score=320.88  Aligned_cols=197  Identities=31%  Similarity=0.527  Sum_probs=168.5

Q ss_pred             cccCCceEEECCCCCHHHHHHHHHHHHHhcCCCCCCcCCccCCCceeeeEEEEec-cccCCCC--CcccCcccCCCCCCC
Q 012687          234 GILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLG-LDWDPQT--RKYGKKRQVDGCEPS  310 (458)
Q Consensus       234 ~~l~PGLvLlpnFLS~eEQ~~Li~~l~e~~l~p~~~~qP~~~~G~klklR~v~lG-y~wd~dt--~~Ys~~~p~dg~p~p  310 (458)
                      ..+.||++++|+|+. ++|++|+++|+++.. +.+|+++.++.|+.|.+||++|| ++|..+.  |+|++.++..+.+|+
T Consensus         3 ~~~~~g~~~~~~~~~-~~~~~l~~~~~~~~~-~~p~~~~~~pgg~~~s~~~~~~g~~~W~~d~~~Y~Ys~~~~~~~~pw~   80 (211)
T 3i3q_A            3 EPLAAGAVILRRFAF-NAAEQLIRDINDVAS-QSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWP   80 (211)
T ss_dssp             CCCBTTBEEETTTTT-TTHHHHHHHHHHHHH-HSCCBCCBCTTSCBCSSEEEEESSBEEEEETTEEEEESBCTTTSSBCC
T ss_pred             eecCCCCEEECCcCh-HHHHHHHHHHHHHHh-cCCCceeEcCCCCcCchhhcccccceeecCCCCcCcCCCccCCCCCCC
Confidence            467899999999998 688899999998632 36788888888999999999998 7887764  788887767788999


Q ss_pred             CCcHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCCEEEEeeeCCCCCccccccCccccccccCCCcEEEeecCCc
Q 012687          311 VIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDS  390 (458)
Q Consensus       311 piP~~L~~Lverii~~A~~l~~~~s~~~~~~~~~p~~~pnacLVN~Y~~Gd~IG~H~D~ee~~~sL~~~~PIvSLSLGss  390 (458)
                      +||++|.+|++++.+.+               +++.+.||+||||+|++|++|+||+|++|.+    ++.||+|||||++
T Consensus        81 ~~P~~L~~l~~~~~~~~---------------g~~~~~pn~~LvN~Y~~G~~i~~H~D~~e~~----~~~pI~svSLG~~  141 (211)
T 3i3q_A           81 AMPQSFHNLCQRAATAA---------------GYPDFQPDACLINRYAPGAKLSLHQDKDEPD----LRAPIVSVSLGLP  141 (211)
T ss_dssp             CCCHHHHHHHHHHHHHT---------------TCTTCCCCEEEEEEECTTCCEEEECCCCCSC----TTSCEEEEEEESC
T ss_pred             chHHHHHHHHHHHHHhc---------------CCCCcCCCEEEEEEEcCCCCcccccCCCccc----cCCCEEEEECCCC
Confidence            99999999999875432               3456789999999999999999999965542    4579999999999


Q ss_pred             eeeeeecccCCCccEEEEcCCCCEEEecCCcccccccccccCCCCCCCccccccCCCCCeEEEEeecC
Q 012687          391 AEFLYGDERDANKAEKVLLESGDVLIFGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFRQY  458 (458)
Q Consensus       391 avF~fr~~~~~d~~~~V~LesGDLLIM~GeSR~~wHgVp~I~p~t~P~~L~~~~~~r~~RINLTFRqv  458 (458)
                      |+|.|++.++.+....|.|++||+|||+|++|+++|+|++++.++.|.       .+++|||||||++
T Consensus       142 ~~f~f~~~~~~~~~~~i~L~~GsllvM~G~~r~~~H~I~~~~~~~~p~-------~~~~RIsLTFR~~  202 (211)
T 3i3q_A          142 AIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPL-------TIDCRYNLTFRQA  202 (211)
T ss_dssp             EEEEECCSSTTSCCEEEEECTTCEEEECGGGTTCCEEECCCCCCCBTT-------TBTCEEEEEEECC
T ss_pred             eEEEEecccCCCceEEEECCCCCEEEECchHHceEeccCcccCCcCCC-------CCCCEEEEEeeec
Confidence            999999876666788999999999999999998669999998877662       4789999999975
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3lfm_A Protein FTO; FAT MASS and obesity associated (FTO) protein, Fe2+/2-oxoGlu (2-OG)-dependent oxidative DNA/RNA demethylases, oxidoreduc; HET: 3DT OGA; 2.50A {Homo sapiens} Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9 Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 458
d2fdia1200 b.82.2.10 (A:15-214) Alkylated DNA repair protein 9e-34
d2iuwa1210 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo s 1e-09
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Length = 200 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: Alkylated DNA repair protein AlkB
species: Escherichia coli [TaxId: 562]

 Score =  123 bits (310), Expect = 9e-34
 Identities = 64/225 (28%), Positives = 93/225 (41%), Gaps = 31/225 (13%)

Query: 236 LRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMC---LGLDWD 292
           L  G V+L+ +     + LI  I     + P  F Q     G  + + M     LG    
Sbjct: 1   LAAGAVILRRFAFNAAEQLIRDINDVASQSP--FRQMVTPGGYTMSVAMTNCGHLGWTTH 58

Query: 293 PQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDIC 352
            Q   Y             +P  F  L QR+ + A                 P   PD C
Sbjct: 59  RQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAG---------------YPDFQPDAC 103

Query: 353 IVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAEFLYGDERDANKAEKVLLESG 412
           ++N Y    +L LHQD+DE         P+VS S+G  A F +G  +  +  +++LLE G
Sbjct: 104 LINRYAPGAKLSLHQDKDEPDL----RAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHG 159

Query: 413 DVLIFGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFRQ 457
           DV+++GGESR  +HG+  +     P       +    R NLTFRQ
Sbjct: 160 DVVVWGGESRLFYHGIQPLKAGFHP-------LTIDCRYNLTFRQ 197
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 210 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query458
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 99.98
d2a1xa1296 Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie 96.27
d2fcta1308 Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom 95.33
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: Alkylated DNA repair protein AlkB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.8e-44  Score=333.88  Aligned_cols=195  Identities=31%  Similarity=0.545  Sum_probs=169.6

Q ss_pred             cCCceEEECCCCCHHHHHHHHHHHHHhcCCCCCCcCCccCCCceeeeEEEEec-cccCCCC--CcccCcccCCCCCCCCC
Q 012687          236 LRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLG-LDWDPQT--RKYGKKRQVDGCEPSVI  312 (458)
Q Consensus       236 l~PGLvLlpnFLS~eEQ~~Li~~l~e~~l~p~~~~qP~~~~G~klklR~v~lG-y~wd~dt--~~Ys~~~p~dg~p~ppi  312 (458)
                      +.||++++++|+.+ +|++|+++|+++. ...+|+++.++.|+.|++||+++| ++|.+|.  |+|+..++.++.+||+|
T Consensus         1 lapG~v~l~~f~~~-~~~~ll~~~~~~~-~~~p~r~~~~p~g~~msv~~~~~g~~gW~~d~~~Yry~~~~~~~~~~wp~i   78 (200)
T d2fdia1           1 LAAGAVILRRFAFN-AAEQLIRDINDVA-SQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAM   78 (200)
T ss_dssp             CCTTEEEETTTTTT-THHHHHHHHHHHH-HHSCCBCCBCTTSCBCSSEEEEESSBEEEEETTEEEEESBCTTTSSBCCCC
T ss_pred             CCCCEEEECCcCCH-HHHHHHHHHHHHH-hhCCceeeecCCCCcceEEEEeccccccccCCcCcccccccCCCCCCCCCc
Confidence            57999999999874 5667888888753 247899999999999999999998 7888777  45677777888999999


Q ss_pred             cHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCCEEEEeeeCCCCCccccccCccccccccCCCcEEEeecCCcee
Q 012687          313 PSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQDRDESRYSLKKGLPVVSFSVGDSAE  392 (458)
Q Consensus       313 P~~L~~Lverii~~A~~l~~~~s~~~~~~~~~p~~~pnacLVN~Y~~Gd~IG~H~D~ee~~~sL~~~~PIvSLSLGssav  392 (458)
                      |++|.+|+++++..+               +++.+.||+||||+|++|++|++|.|++|.+    ++.||+|||||++|+
T Consensus        79 P~~l~~L~~~~~~~~---------------~~~~~~pn~~LvN~Y~~G~~~~~h~dddE~~----~~~pIvslSLG~~~~  139 (200)
T d2fdia1          79 PQSFHNLCQRAATAA---------------GYPDFQPDACLINRYAPGAKLSLHQDKDEPD----LRAPIVSVSLGLPAI  139 (200)
T ss_dssp             CHHHHHHHHHHHHHH---------------TCTTCCCSEEEEEEECTTCCEEEECCCCSSC----TTSCEEEEEEESCEE
T ss_pred             cHHHHHHHHHHHHHc---------------CCCccCCCeeEEEEecCCCCccccccCCccc----cCCCceEEEEeCCee
Confidence            999999999987653               4677899999999999999999988887753    578999999999999


Q ss_pred             eeeecccCCCccEEEEcCCCCEEEecCCcccccccccccCCCCCCCccccccCCCCCeEEEEeecC
Q 012687          393 FLYGDERDANKAEKVLLESGDVLIFGGESRHVFHGVSSINPNSAPGALLENTMLRPGRLNLTFRQY  458 (458)
Q Consensus       393 F~fr~~~~~d~~~~V~LesGDLLIM~GeSR~~wHgVp~I~p~t~P~~L~~~~~~r~~RINLTFRqv  458 (458)
                      |+|++.++.+++..+.|++||||||+|++|++||+|+++++++.|       ..++.|||||||++
T Consensus       140 f~f~~~~~~~~~~~~~L~~Gdllvm~G~~r~~~H~V~~~~~~~~~-------~~~~~RislTfR~~  198 (200)
T d2fdia1         140 FQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHP-------LTIDCRYNLTFRQA  198 (200)
T ss_dssp             EEECCSSTTSCCEEEEECTTCEEEECGGGGGCCEEECCCCCCCBT-------TTBTCEEEEEEECC
T ss_pred             EEecccccCCceEEEEcCCCCEEEeCcchhheEecCCcccCCCCC-------CCCCCeEEEEEEec
Confidence            999988777888999999999999999999988999999988776       25788999999984
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Back     information, alignment and structure