Citrus Sinensis ID: 012747
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 457 | ||||||
| 224142389 | 450 | predicted protein [Populus trichocarpa] | 0.975 | 0.991 | 0.701 | 0.0 | |
| 225444551 | 450 | PREDICTED: uncharacterized protein LOC10 | 0.975 | 0.991 | 0.690 | 0.0 | |
| 297740691 | 456 | unnamed protein product [Vitis vinifera] | 0.975 | 0.978 | 0.690 | 0.0 | |
| 255557313 | 456 | conserved hypothetical protein [Ricinus | 0.989 | 0.991 | 0.701 | 0.0 | |
| 356557813 | 458 | PREDICTED: uncharacterized protein LOC10 | 0.991 | 0.989 | 0.682 | 0.0 | |
| 356510790 | 458 | PREDICTED: uncharacterized protein LOC10 | 0.960 | 0.958 | 0.690 | 1e-180 | |
| 449434260 | 467 | PREDICTED: uncharacterized protein LOC10 | 0.995 | 0.974 | 0.672 | 1e-179 | |
| 357447307 | 457 | hypothetical protein MTR_2g019450 [Medic | 0.984 | 0.984 | 0.660 | 1e-179 | |
| 449518601 | 467 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.995 | 0.974 | 0.670 | 1e-179 | |
| 147860064 | 545 | hypothetical protein VITISV_037979 [Viti | 0.938 | 0.787 | 0.664 | 1e-177 |
| >gi|224142389|ref|XP_002324541.1| predicted protein [Populus trichocarpa] gi|222865975|gb|EEF03106.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/456 (70%), Positives = 376/456 (82%), Gaps = 10/456 (2%)
Query: 1 MGKTTPCKIPLLFQSKLLCFSLLYLASTLFFALRNSLSPSQCGFKDPPFDPIQTPLFTYP 60
MGK K PL+FQSKLLC SLLYL +TLF AL S+ P++C F+ PFDPIQTP F+YP
Sbjct: 1 MGKAKLSK-PLIFQSKLLCISLLYLITTLFLALYTSIYPTKCLFRSSPFDPIQTPFFSYP 59
Query: 61 HSYGEHKYALPARRSSCSSSVLFSDYKVVFKEIQDLCGNSSAFPPVLKYMQGNADSFGGH 120
SYGEHKY +P RSSCSS + FSDY +V KEI LC NSS L+YM+GN+ +FGG+
Sbjct: 60 SSYGEHKYVIPTHRSSCSSPIYFSDYWMVLKEILQLCQNSSVSSHALRYMKGNSKNFGGN 119
Query: 121 FGTKKSIAYFDHQNNSLDLPCGFFKKFPISDSDRTAMENCHGVVVVSAIFNNHDKIRQPR 180
FGT+K I+YFD N+S+++PCGFF++FP+SDSDR AME+CHGVVVVSAIFN+HDKIRQP+
Sbjct: 120 FGTQKRISYFDLLNDSVEVPCGFFQRFPVSDSDRMAMESCHGVVVVSAIFNDHDKIRQPK 179
Query: 181 GLGSKTLETVCFFMFVDDTTLKGLEHHHLIYEKSNEFKIGAWRIVKVSSKNLYENPAMNG 240
LGSKTL+ VCFFMFVDD TLKGL+HH +I S+E+ +G WRI+KVSSK+LY+NPAMNG
Sbjct: 180 SLGSKTLDNVCFFMFVDDITLKGLDHHEVISRNSHEYNVGVWRIIKVSSKDLYDNPAMNG 239
Query: 241 VIPKYLVHRLFPNSKFSIWVDAKLQLTADPLLLIHALVVSENVDMAISKHPFFIHTMEEA 300
VIPKYLVHRLFPNSKFSIWVDAKLQL DPL+LIHALVVSE VDMAISKHPFFIHTMEEA
Sbjct: 240 VIPKYLVHRLFPNSKFSIWVDAKLQLMVDPLILIHALVVSEKVDMAISKHPFFIHTMEEA 299
Query: 301 MATARWKKWRDVNALLMQMETYCENGLQPWSSNKLPYPSDVPDSALILRKHGLRSNLFSC 360
+ATARWKKW+DV+ L QMETYCENGLQPW+ K PYPSDVPDSALILR+HGL SNLFSC
Sbjct: 300 LATARWKKWKDVDGLRNQMETYCENGLQPWTPKK-PYPSDVPDSALILRQHGLNSNLFSC 358
Query: 361 LMFSELEAFNPRDQLAFAYVRDNMSPKLKLNMFEEQVFEDIAVEYRHSLKRVGIGANDEG 420
L+F+ELEAFNPRDQL FAYVRD M PKLKLNMFE +VFE +A+EYRH+LK+ +G
Sbjct: 359 LVFNELEAFNPRDQLPFAYVRDRMKPKLKLNMFEVEVFEQVALEYRHNLKK-------DG 411
Query: 421 SKASNSKGTKRASHELLFINGSSCSSCQNYLLKMWG 456
+ A +K S++ L+IN S CS C NYLL+MWG
Sbjct: 412 TSAGGIPSSKSVSND-LYINSSCCSKCHNYLLEMWG 446
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444551|ref|XP_002269609.1| PREDICTED: uncharacterized protein LOC100246938 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|297740691|emb|CBI30873.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|255557313|ref|XP_002519687.1| conserved hypothetical protein [Ricinus communis] gi|223541104|gb|EEF42660.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|356557813|ref|XP_003547205.1| PREDICTED: uncharacterized protein LOC100809755 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356510790|ref|XP_003524117.1| PREDICTED: uncharacterized protein LOC100792354 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449434260|ref|XP_004134914.1| PREDICTED: uncharacterized protein LOC101215259 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|357447307|ref|XP_003593929.1| hypothetical protein MTR_2g019450 [Medicago truncatula] gi|355482977|gb|AES64180.1| hypothetical protein MTR_2g019450 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|449518601|ref|XP_004166325.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101215259 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|147860064|emb|CAN78735.1| hypothetical protein VITISV_037979 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 457 | ||||||
| TAIR|locus:2162065 | 462 | AT5G46220 [Arabidopsis thalian | 0.993 | 0.982 | 0.612 | 5.6e-155 | |
| TAIR|locus:2032137 | 581 | AT1G28240 [Arabidopsis thalian | 0.765 | 0.602 | 0.347 | 3.3e-47 | |
| TAIR|locus:2037053 | 540 | AT1G53040 [Arabidopsis thalian | 0.606 | 0.512 | 0.361 | 2.5e-42 | |
| TAIR|locus:2121194 | 499 | AT4G38500 [Arabidopsis thalian | 0.623 | 0.571 | 0.325 | 1.2e-40 | |
| TAIR|locus:2056750 | 460 | AT2G02910 [Arabidopsis thalian | 0.590 | 0.586 | 0.376 | 1.6e-40 | |
| TAIR|locus:2009253 | 735 | EMB2756 "EMBRYO DEFECTIVE 2756 | 0.614 | 0.382 | 0.347 | 3.9e-37 | |
| TAIR|locus:2136907 | 711 | AT4G09630 [Arabidopsis thalian | 0.614 | 0.395 | 0.340 | 9.2e-37 | |
| TAIR|locus:2165457 | 463 | AT5G42660 [Arabidopsis thalian | 0.638 | 0.630 | 0.331 | 2.8e-34 |
| TAIR|locus:2162065 AT5G46220 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1511 (537.0 bits), Expect = 5.6e-155, P = 5.6e-155
Identities = 284/464 (61%), Positives = 357/464 (76%)
Query: 1 MGK--TTPCKIPLLFQSKLLCFSLLYLASTLFFALRNSLSPSQCGFKDPPFDPIQTPLFT 58
MGK TT PL +SKLLCFSLLYL ST+F L SLS +QC F+ PFDPIQ LF+
Sbjct: 1 MGKFITTTLSPPLYARSKLLCFSLLYLFSTIFLFLYVSLSRNQCIFRYSPFDPIQAKLFS 60
Query: 59 YPHSYGEHKYALPARRXXXXXXVLFSDYKVVFKEIQDLCGNSSAFPPVLKYMQGNADSFG 118
YP SYGEHKYALP R + FSDY V KEIQ + SS L+Y+ G ++SFG
Sbjct: 61 YPSSYGEHKYALPTHRSSCSSPIFFSDYWTVLKEIQSILSGSSP-KENLRYINGKSESFG 119
Query: 119 GHFGTKKSIAYFDHQNNSLDLPCGFFKKFPISDSDRTAMENCHGVVVVSAIFNNHDKIRQ 178
G+F T+K +YF+H N +++PCGFF+ FP+S+SDR ME C G+VV SAIFN+HDKIRQ
Sbjct: 120 GNFSTQKRFSYFNHSNIDVEVPCGFFRDFPVSNSDRVEMEKC-GLVVASAIFNDHDKIRQ 178
Query: 179 PRGLGSKTLETVCFFMFVDDTTLKGLEHHHLIYEKS-NEFKIGAWRIVKVS-SKNLYENP 236
P GLG KTLETVCF+MF+DD TL L HH++I + + +++++GAWRI+K+S S+NLY NP
Sbjct: 179 PVGLGVKTLETVCFYMFIDDKTLNSLFHHNVILKNNPSDYRVGAWRIIKISKSENLYLNP 238
Query: 237 AMNGVIPKYLVHRLFPNSKFSIWVDAKLQLTADPLLLIHALVVSENVDMAISKHPFFIHT 296
AMNGVIPKYL+HRLFPNSKFSIWVDAK+QL DPLLLIH+++V VDMAISKHPFF++T
Sbjct: 239 AMNGVIPKYLIHRLFPNSKFSIWVDAKIQLMIDPLLLIHSMLVVPEVDMAISKHPFFVNT 298
Query: 297 MEEAMATARWKKWRDVNALLMQMETYCENGLQPWSSNKLPYPSDVPDSALILRKHGLRSN 356
MEEAMATARWKKW DV+ L +QMETYCE+GL+PWSS+KLPYP+DVPD+ALILR+HG+RSN
Sbjct: 299 MEEAMATARWKKWGDVDGLRIQMETYCEHGLKPWSSSKLPYPTDVPDTALILRRHGIRSN 358
Query: 357 LFSCLMFSELEAFNPRDQLAFAYVRDNMSPKLKLNMFEEQVFEDIAVEYRHSLKRVGIGA 416
LFSC MF+ELEAFNPRDQLAFA+VRD+++PK+K+NMFE +VFE + VEYRH+LK++
Sbjct: 359 LFSCFMFNELEAFNPRDQLAFAFVRDHINPKVKMNMFEVEVFEQVVVEYRHNLKKIESST 418
Query: 417 NDEGSKASNSKGTKRASHELLFINGSSCS----SCQNYLLKMWG 456
+E + + + +++ S S SC+NYL MWG
Sbjct: 419 YEEQEEEQKQESLRTIQKRRKWLDHESWSLNRSSCKNYLTDMWG 462
|
|
| TAIR|locus:2032137 AT1G28240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2037053 AT1G53040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2121194 AT4G38500 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2056750 AT2G02910 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2009253 EMB2756 "EMBRYO DEFECTIVE 2756" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2136907 AT4G09630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2165457 AT5G42660 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 457 | |||
| pfam04765 | 306 | pfam04765, DUF616, Protein of unknown function (DU | 1e-150 |
| >gnl|CDD|218253 pfam04765, DUF616, Protein of unknown function (DUF616) | Back alignment and domain information |
|---|
Score = 429 bits (1106), Expect = e-150
Identities = 151/312 (48%), Positives = 200/312 (64%), Gaps = 18/312 (5%)
Query: 107 LKYMQGNA-------DSFGGHFGTKKSIAYFDHQNNSLDLPCGFFKK---FPISDSDRTA 156
L Y++ FGG+ ++ + FDH+ + + CGF K F IS+SDR
Sbjct: 2 LTYIEEEEKNKGYGGPLFGGNQSLEERESSFDHKET-MTVHCGFVKPNTGFDISESDRKY 60
Query: 157 MENCHGVVVVSAIFNNHDKIRQPRGLGSKTLETVCFFMFVDDTTLKGLEHHHLIYEKSNE 216
ME C VVV SAIF ++DKIRQP+G+ ++ + VCF MFVD+ TL L+ + +
Sbjct: 61 MEKCR-VVVASAIFGDYDKIRQPKGISKRSKKNVCFVMFVDEETLSTLKSEGHVPDD--N 117
Query: 217 FKIGAWRIVKVSSKNL-YENPAMNGVIPKYLVHRLFPNSKFSIWVDAKLQLTADPLLLIH 275
++G WRIV V KNL Y +P NG +PKYL+HRLFPN+++SIWVDAKLQL DPLL++
Sbjct: 118 GRVGLWRIVVV--KNLPYTDPRRNGKVPKYLLHRLFPNARYSIWVDAKLQLVVDPLLILE 175
Query: 276 ALVVSENVDMAISKHPFFIHTMEEAMATARWKKWRDVNALLMQMETYCENGLQPWSSNKL 335
+ N D AISKH F EEA A RWKK+ D ++ QME YC +GL PWS KL
Sbjct: 176 RFLWRTNSDFAISKHYFRHCVYEEAEANKRWKKYGD-ASIDEQMEFYCSDGLTPWSDPKL 234
Query: 336 PYPSDVPDSALILRKHGLRSNLFSCLMFSELEAFNPRDQLAFAYVRDNMSPKLKLNMFEE 395
P PSDVP+ A+I+R+H SNLFSCL F+E++ F RDQL+FAYVRD + PK K+NMF++
Sbjct: 235 PLPSDVPEGAVIVREHTPMSNLFSCLWFNEVDRFTSRDQLSFAYVRDKLRPKFKMNMFKD 294
Query: 396 QVFEDIAVEYRH 407
+ V YRH
Sbjct: 295 CERRSLVVLYRH 306
|
Family of uncharacterized proteins. Length = 306 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 457 | |||
| PF04765 | 305 | DUF616: Protein of unknown function (DUF616); Inte | 100.0 | |
| cd04194 | 248 | GT8_A4GalT_like A4GalT_like proteins catalyze the | 81.92 |
| >PF04765 DUF616: Protein of unknown function (DUF616); InterPro: IPR006852 The entry represents a protein of unknown function | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-111 Score=837.66 Aligned_cols=295 Identities=51% Similarity=0.842 Sum_probs=284.4
Q ss_pred ceeeecCC-------CCCCCCCCchhhhhhhhhcccCcccccccccc--CCCCCHhhHHHHhccCcEEEEEEeeCCCCcC
Q 012747 106 VLKYMQGN-------ADSFGGHFGTKKSIAYFDHQNNSLDLPCGFFK--KFPISDSDRTAMENCHGVVVVSAIFNNHDKI 176 (457)
Q Consensus 106 ~l~y~~~~-------~~~FgG~~s~~~R~~sf~~~~~~~~vhCGF~~--~F~i~~~d~~~m~~c~kvVVyTAIFG~YD~L 176 (457)
+|+|+.++ .++|||||||+||++||++ .++|+|||||++ ||||+|.|+.+|++|+ |||||||||+||+|
T Consensus 1 nl~y~~~~~~~~~~~~~~f~g~~s~~~R~~sf~~-~~~~~v~Cgf~~~~gf~i~~~d~~~m~~c~-vvV~saIFG~yD~l 78 (305)
T PF04765_consen 1 NLTYIEEENKPESGRGPSFGGNQSLEERESSFDI-QEDMTVHCGFVKNTGFDISESDRRYMEKCR-VVVYSAIFGNYDKL 78 (305)
T ss_pred CCcccccccccccCCCCCcCCcCCHHHHHHhcCC-CCCceeccccccCCCCCCCHHHHHHHhcCC-EEEEEEecCCCccc
Confidence 35666555 5999999999999999995 688999999999 9999999999999995 99999999999999
Q ss_pred CCCCCCCCCCCCceeEEEEeeccchhhhccccccccccCcccccceEEEEecCCCc-CCCcccccccceeeccccCCCCC
Q 012747 177 RQPRGLGSKTLETVCFFMFVDDTTLKGLEHHHLIYEKSNEFKIGAWRIVKVSSKNL-YENPAMNGVIPKYLVHRLFPNSK 255 (457)
Q Consensus 177 ~~P~~i~~~s~d~VCF~mFtDe~tl~~l~~~g~~~~~~~~~~~g~WrIV~V~~~nL-y~D~rrngRipKiLpHrLFPny~ 255 (457)
+||+++++.++++|||+||||+.|+++|+++|.++ ++++++|+||||+|+ ++ |.|+||+||+||+|||+|||||+
T Consensus 79 ~qP~~i~~~s~~~vcf~mF~D~~t~~~l~~~~~~~--~~~~~ig~WrIv~v~--~lp~~d~rr~~r~~K~lpHrlfp~y~ 154 (305)
T PF04765_consen 79 RQPKNISEYSKKNVCFFMFVDEETLKSLESEGHIP--DENKKIGIWRIVVVK--NLPYDDPRRNGRIPKLLPHRLFPNYD 154 (305)
T ss_pred cCchhhCHHHhcCccEEEEEehhhHHHHHhcCCcc--ccccccCceEEEEec--CCCCcchhhcCcccceeccccCCCCc
Confidence 99999999999999999999999999999999986 788899999999996 78 99999999999999999999999
Q ss_pred eEEEEeCceeEecCHHHHHHHHHhcCCCcEEEecCCCCCChHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCCCCCCC
Q 012747 256 FSIWVDAKLQLTADPLLLIHALVVSENVDMAISKHPFFIHTMEEAMATARWKKWRDVNALLMQMETYCENGLQPWSSNKL 335 (457)
Q Consensus 256 ySIWIDgkiqL~~DP~~lIe~~L~r~~~~~AiskHp~R~ciYEEA~ac~r~~Kydd~~~I~~Qm~~Yk~eGlp~~s~~kl 335 (457)
|||||||||+|++||++||+++||+++++|||++||.|+||||||+||++++|++ ++.|++||++|+++|||+|+++|+
T Consensus 155 ySIWID~ki~L~~Dp~~lie~~l~~~~~~~Ai~~H~~R~cvyeEa~a~~~~~k~~-~~~I~~Qm~~Y~~eGlp~~s~~k~ 233 (305)
T PF04765_consen 155 YSIWIDGKIQLIVDPLLLIERFLWRKNADIAISKHPERNCVYEEAEACKRLGKYD-PERIDEQMEFYKQEGLPPWSPAKL 233 (305)
T ss_pred eEEEEeeeEEEecCHHHHHHHHHhcCCCcEEEeCCCCcccHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCCccccccc
Confidence 9999999999999999999999999999999999999999999999999999965 699999999999999999999999
Q ss_pred CCCCCCCcccEEEeccCCcchhhHHHHHHHHhhCCCCCCchHHHHHHhhCCCcccccchhHHHHHHHHhhcc
Q 012747 336 PYPSDVPDSALILRKHGLRSNLFSCLMFSELEAFNPRDQLAFAYVRDNMSPKLKLNMFEEQVFEDIAVEYRH 407 (457)
Q Consensus 336 P~~sgLpE~~vIIR~Ht~~snlfmclWfnEv~rfs~RDQLSF~YVl~k~~~~~~lnmF~~~~~~~~~~~~rH 407 (457)
|+.+|||||+||||+|++++|+|||+|||||++||+||||||+||+||+++++++|||++|+|++++++|+|
T Consensus 234 ~l~s~v~E~~iIiR~H~~~~nlf~clWfnEv~rfs~RDQLSF~Yv~wk~~~~~~~~mf~~~~~~~~~~~~~h 305 (305)
T PF04765_consen 234 PLPSDVPEGNIIIRKHNPMSNLFMCLWFNEVERFSPRDQLSFPYVLWKLGPKFKLNMFKDCERRQLVVLYRH 305 (305)
T ss_pred ccccCCccceEEEecCCchhHHHHHHHHHHHhcCCCcccchHHHHHHHhCCcccchhhhHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
|
The function of is unknown although a number of the members are thought to be glycosyltransferases. |
| >cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 457 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 2e-04
Identities = 64/446 (14%), Positives = 126/446 (28%), Gaps = 140/446 (31%)
Query: 33 LRNSLSPSQCG--FKDPPFDPIQTP--LFTYPHSYGEHKYALPARRSSCSSSVLFSDYKV 88
++ LS + D + LF S E VL +YK
Sbjct: 42 PKSILSKEEIDHIIMSK--DAVSGTLRLFWTLLSKQEEMVQ------KFVEEVLRINYKF 93
Query: 89 VFKEIQDLCGNSSAFPPVLKYMQGNADSFGGHFGTKKSIAYFDHQNNSLDLPCGFFKKFP 148
+ I+ S T+ I D N + F K+
Sbjct: 94 LMSPIKTEQRQPSM-------------------MTRMYIEQRDRLYNDNQV----FAKYN 130
Query: 149 ISDSD-----RTAMEN--------CHG-------VVVVSAIFNNHDKIRQPRG-----LG 183
+S R A+ G V + + + + L
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 184 S--------KTLETVCFFMFVDDTTLKGLEHHHLIYEKSNEFKIGAWRIVK--------- 226
+ + L+ + + + D +H I + + + R++K
Sbjct: 191 NCNSPETVLEMLQKLLYQI--DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 227 ----VSSKNLYENPAMNG-----VIPKY--LVHRLFPNSKFSIWVDAKLQ-LTADPLLLI 274
V + + A N + ++ + L + I +D LT D + +
Sbjct: 249 VLLNVQNAKAWN--AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 275 HALVVSENVDM----AISKHPFFIHTMEEAM--ATARWKKWRDVNALLMQMETYCENGLQ 328
+ ++ +P + + E++ A W W+ VN ++ T E+ L
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN--CDKLTTIIESSL- 363
Query: 329 PWSSNKLPYPSDVPDSALILRKHGLRSNLFSCLMFSELEAFNPRDQLAFAYVRDNMSPKL 388
N L P++ RK MF L F P ++ L
Sbjct: 364 ----NVLE-PAE-------YRK-----------MFDRLSVF-PPS------A--HIPTIL 391
Query: 389 KLNMF----EEQVFEDIAVE-YRHSL 409
L++ + + + +++SL
Sbjct: 392 -LSLIWFDVIKSDVMVVVNKLHKYSL 416
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00