Citrus Sinensis ID: 012786

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450------

MALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP

cccccccccccccccccccccEEEEEcccccccccEEEEccccccHHHHHHcccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccccEEEEcccccEEEccccEEcccccccccccccccccccccccccEEEEEEEcccccccccccHHHHHHcccEEEEEEcccHHHHHHHHHcccccccccccccccccccccHHHccccccccccccccccccccccccccccEEEEEEEEEccccccEEEEEcccccccccHHHHHHHHHHccccccccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEEEEccccEEEEEEEEEEEEEcccc

ccccEccccccccccccccccEEEEEEccEEEEEEEEEEccEEEEHHHHHHcccccccccccHHHHHccccHHHHHHcHHHHHHHHHHHHHHHEcccHHHHccHHHHHHHEEEHHHEEEEcccccccEEEEcccHHHHHHHHHHHHccccccccccHHHHHHccccccEEEEEEEEEHHHHEEEEEEccEEEEccccEEEcccccEEEccccEEccEEEEccccccccEEEEcccEEcEEEEEEEEcccccccccccHHHHHHHEEEEEEEEccEEHHHHHHHcccccccHHHHccEEEcccEEEHHHHHHHEEccccccccccHHHccccccEEccEEEEEEEcccccccEEEEEEEHHHccccHHHHHHHHHccccccccccEEEccccccccHHHccEHHHHcccccccEEccccEEcccccccEEEEEEEEEccccEEEcccEEEEEEcccc

malqsfievepdshfpiqnlpygvfkpepasvarpgvaiGEYVLDLSEiskaglfngpilkdsdcflqpnlnkflslgrPAWKEARDMLQKLLSSneatlrdnanlrqkslvpmgkvemllpmeigdytdffssmhhakncgtifrgpanavpaNWYVILKSTSKQGIVSVLTLVYYSIFHLqvyrvvpyfrfhlpiayhgrassvvisgtdivrprgqfapsgnspppfgpsqkldFELEMAAvvgpgnelgkpidvneaADHIFGVMLMNDWSARDIQaweyvplgpflgksfgttlspwivtldalepfacdspkqdpqplpylaeKISKNYDISlevqikpagkedscvvtrsNFKYLYWTLTQQLAHHTingcnlrsgdllgtgtisgpepeslgclleltwngqkplsldgftrkfledgdevtftgfckgngytvgfgtcsgkivpstp

MALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSsneatlrdnanlrqkslvpmgkVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVqikpagkedscvVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGfckgngytvgfgtcsgkivpstp

MALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFApsgnspppfgpsQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP

*************HFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDML*********************LVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIV*************************LEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACD*********PYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKI*****

**LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS**

***QSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS**

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMxxxxxxxxxxxxxxxxxxxxxSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		456	2.2.26 [Sep-21-2011]
A5PKH3		419	Fumarylacetoacetase OS=Bo	yes	no	0.903	0.983	0.544	1e-140
P16930		419	Fumarylacetoacetase OS=Ho	yes	no	0.903	0.983	0.542	1e-138
P25093		419	Fumarylacetoacetase OS=Ra	yes	no	0.903	0.983	0.533	1e-137
Q1ZXQ1		427	Fumarylacetoacetase OS=Di	yes	no	0.910	0.971	0.527	1e-135
P35505		419	Fumarylacetoacetase OS=Mu	yes	no	0.903	0.983	0.528	1e-135
Q00770		431	Fumarylacetoacetase OS=Em	yes	no	0.905	0.958	0.457	1e-106
O06724		301	Uncharacterized protein Y	yes	no	0.276	0.418	0.269	2e-05
Q59050		237	Uncharacterized protein M	yes	no	0.182	0.350	0.279	0.0001
O28058		250	Uncharacterized protein A	no	no	0.267	0.488	0.298	0.0002
O58377		230	Uncharacterized protein P	yes	no	0.388	0.769	0.244	0.0004

>sp\|A5PKH3\|FAAA_BOVIN Fumarylacetoacetase OS=Bos taurus GN=FAH PE=2 SV=1	Back alignment and function desciption

 Score =  499 bits (1286), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/452 (54%), Positives = 303/452 (67%), Gaps = 40/452 (8%)

Query: 5   SFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILK-DS 63
           SF+ V  DS FPI NLPYGVF        R GVAIG+ +LDLS I    LF GPIL    
Sbjct: 2   SFVPVAEDSDFPIHNLPYGVFSTRGNPRPRIGVAIGDQILDLSVIKH--LFTGPILSGHQ 59

Query: 64  DCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPM 123
           D F +P LN F+ LG+ AWKEAR  LQ LLS+++A LRD+  LRQ++        M LP 
Sbjct: 60  DVFNKPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDVELRQRAFTSQASATMYLPA 119

Query: 124 EIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIFHLQ 183
            IGDYTDF+SS HHA N G +FRG  NA+  NW                           
Sbjct: 120 TIGDYTDFYSSRHHATNVGVMFRGKENALMPNW--------------------------- 152

Query: 184 VYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMA 243
                     HLP+ YHGRASSVV+SGT I RP GQ  P  + PP +G  + LDFELEMA
Sbjct: 153 ---------LHLPVGYHGRASSVVVSGTPIRRPLGQMRPDDSKPPVYGACKLLDFELEMA 203

Query: 244 AVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWI 303
             VGPGN+LG+PI +++A +HIFG++LMNDWSARDIQ WEYVPLGPFLGKSFGTT+SPW+
Sbjct: 204 FFVGPGNKLGEPIPISKAHEHIFGMVLMNDWSARDIQKWEYVPLGPFLGKSFGTTISPWV 263

Query: 304 VTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLY 363
           V +DAL PFA  +P+QDP+PLPYL       +DI+L V +K  G   +  + RSNFKY+Y
Sbjct: 264 VPMDALMPFAVSNPEQDPKPLPYLCHDQPYTFDINLSVALKGEGMSQAATICRSNFKYMY 323

Query: 364 WTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKF 422
           WT+ QQL HH++NGCNL+ GDLL +GTISGPEPES GC+LEL+W G + + L +G TRKF
Sbjct: 324 WTMLQQLTHHSVNGCNLQPGDLLASGTISGPEPESFGCMLELSWKGTRAVELGNGQTRKF 383

Query: 423 LEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 454
           L DGDEV  TG C+G+GY +GFG C+GK++P+
Sbjct: 384 LLDGDEVIMTGHCQGDGYRIGFGQCAGKVLPA 415

Bos taurus (taxid: 9913)
EC: 3EC: .EC: 7EC: .EC: 1EC: .EC: 2

>sp\|P16930\|FAAA_HUMAN Fumarylacetoacetase OS=Homo sapiens GN=FAH PE=1 SV=2	Back alignment and function description

>sp\|P25093\|FAAA_RAT Fumarylacetoacetase OS=Rattus norvegicus GN=Fah PE=1 SV=1	Back alignment and function description

>sp\|Q1ZXQ1\|FAAA_DICDI Fumarylacetoacetase OS=Dictyostelium discoideum GN=fah PE=3 SV=1	Back alignment and function description

>sp\|P35505\|FAAA_MOUSE Fumarylacetoacetase OS=Mus musculus GN=Fah PE=1 SV=2	Back alignment and function description

>sp\|Q00770\|FAAA_EMENI Fumarylacetoacetase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=fahA PE=1 SV=3	Back alignment and function description

>sp\|O06724\|YISK_BACSU Uncharacterized protein YisK OS=Bacillus subtilis (strain 168) GN=yisK PE=2 SV=1	Back alignment and function description

>sp\|Q59050\|Y1656_METJA Uncharacterized protein MJ1656 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1656 PE=3 SV=1	Back alignment and function description

>sp\|O28058\|Y2225_ARCFU Uncharacterized protein AF_2225 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_2225 PE=3 SV=1	Back alignment and function description

>sp\|O58377\|Y643_PYRHO Uncharacterized protein PH0643 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0643 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		456
255559084		421	fumarylacetoacetate hydrolase, putative	0.916	0.992	0.784	0.0
224086373		419	predicted protein [Populus trichocarpa]	0.916	0.997	0.777	0.0
147771009		419	hypothetical protein VITISV_033628 [Viti	0.918	1.0	0.767	0.0
359495556		419	PREDICTED: fumarylacetoacetase-like [Vit	0.918	1.0	0.765	0.0
357447871		421	Fumarylacetoacetase [Medicago truncatula	0.916	0.992	0.733	0.0
297844060		421	hypothetical protein ARALYDRAFT_471353 [	0.916	0.992	0.737	0.0
22329501		421	fumarylacetoacetase [Arabidopsis thalian	0.916	0.992	0.735	0.0
449434018		430	PREDICTED: fumarylacetoacetase-like [Cuc	0.918	0.974	0.732	0.0
388508774		421	unknown [Lotus japonicus]	0.916	0.992	0.731	0.0
356555724		421	PREDICTED: fumarylacetoacetase-like [Gly	0.918	0.995	0.714	0.0

>gi\|255559084\|ref\|XP_002520564.1\| fumarylacetoacetate hydrolase, putative [Ricinus communis] gi\|223540224\|gb\|EEF41797.1\| fumarylacetoacetate hydrolase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/454 (78%), Positives = 384/454 (84%), Gaps = 36/454 (7%)

Query: 1   MALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPIL 60
           MAL+SFIEV PDSHFPIQNLPYGVFKPEP S  RP VAIG+Y+LDLSEI+ AGLF+GP L
Sbjct: 1   MALKSFIEVHPDSHFPIQNLPYGVFKPEPTSTPRPAVAIGDYILDLSEITLAGLFDGPTL 60

Query: 61  KDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEML 120
           K+SDCFLQPNLNKF++LGRPAWKEAR  LQKLLSS E  LRD+ NLRQKSL+P+ KVEM+
Sbjct: 61  KNSDCFLQPNLNKFIALGRPAWKEARSTLQKLLSSTEPALRDDRNLRQKSLLPLSKVEMV 120

Query: 121 LPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIF 180
           LP+ IGDYTDFFSSMHHAKNCGTIFRGP N +PANW                        
Sbjct: 121 LPIAIGDYTDFFSSMHHAKNCGTIFRGPQNPIPANW------------------------ 156

Query: 181 HLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFEL 240
                       FHLPIAYHGRASSVV+SGT IVRPRGQ  P+GNSP  FGPSQKLDFEL
Sbjct: 157 ------------FHLPIAYHGRASSVVVSGTGIVRPRGQGHPAGNSPLYFGPSQKLDFEL 204

Query: 241 EMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLS 300
           EMAAVVGPGNELGKP+DVNEA DH+FG++LMNDWSARDIQAWEYVPLGPFLGKSFGTT+S
Sbjct: 205 EMAAVVGPGNELGKPVDVNEAGDHLFGLVLMNDWSARDIQAWEYVPLGPFLGKSFGTTIS 264

Query: 301 PWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFK 360
           PWIVTLDALEPFACD+PKQDP PLPYLAEKISKNYDISLEVQIK AGKED+CVVTRSNFK
Sbjct: 265 PWIVTLDALEPFACDAPKQDPHPLPYLAEKISKNYDISLEVQIKAAGKEDACVVTRSNFK 324

Query: 361 YLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTR 420
           +LYWTLTQQLAHHTINGCNLR GDLLGTGTISGPEPES GCLLELTWNGQKPLSL+G  R
Sbjct: 325 HLYWTLTQQLAHHTINGCNLRPGDLLGTGTISGPEPESYGCLLELTWNGQKPLSLNGTER 384

Query: 421 KFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 454
           KFLEDGDEV F+G  KG+GY VGFGTC GKI+PS
Sbjct: 385 KFLEDGDEVIFSGCSKGDGYNVGFGTCFGKILPS 418

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224086373\|ref\|XP_002307870.1\| predicted protein [Populus trichocarpa] gi\|118481189\|gb\|ABK92546.1\| unknown [Populus trichocarpa] gi\|222853846\|gb\|EEE91393.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|147771009\|emb\|CAN77935.1\| hypothetical protein VITISV_033628 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359495556\|ref\|XP_003635021.1\| PREDICTED: fumarylacetoacetase-like [Vitis vinifera] gi\|297741817\|emb\|CBI33122.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357447871\|ref\|XP_003594211.1\| Fumarylacetoacetase [Medicago truncatula] gi\|87241152\|gb\|ABD33010.1\| Fumarylacetoacetase [Medicago truncatula] gi\|355483259\|gb\|AES64462.1\| Fumarylacetoacetase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297844060\|ref\|XP_002889911.1\| hypothetical protein ARALYDRAFT_471353 [Arabidopsis lyrata subsp. lyrata] gi\|297335753\|gb\|EFH66170.1\| hypothetical protein ARALYDRAFT_471353 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|22329501\|ref\|NP_172669.2\| fumarylacetoacetase [Arabidopsis thaliana] gi\|20334820\|gb\|AAM16166.1\| At1g12050/F12F1_8 [Arabidopsis thaliana] gi\|332190709\|gb\|AEE28830.1\| fumarylacetoacetase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449434018\|ref\|XP_004134793.1\| PREDICTED: fumarylacetoacetase-like [Cucumis sativus] gi\|449516307\|ref\|XP_004165188.1\| PREDICTED: fumarylacetoacetase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|388508774\|gb\|AFK42453.1\| unknown [Lotus japonicus]	Back alignment and taxonomy information

>gi\|356555724\|ref\|XP_003546180.1\| PREDICTED: fumarylacetoacetase-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		456
TAIR\|locus:2008845		421	FAH "AT1G12050" [Arabidopsis t	0.578	0.627	0.803	2.7e-180
UNIPROTKB\|A5PKH3		419	FAH "Fumarylacetoacetase" [Bos	0.572	0.622	0.610	4.2e-130
UNIPROTKB\|F1MYZ7		419	FAH "Fumarylacetoacetase" [Bos	0.572	0.622	0.610	4.2e-130
UNIPROTKB\|F1NYW8		421	FAH "Uncharacterized protein"	0.572	0.619	0.618	6.9e-130
UNIPROTKB\|F1RIF3		419	FAH "Uncharacterized protein"	0.572	0.622	0.618	1.3e-128
UNIPROTKB\|P16930		419	FAH "Fumarylacetoacetase" [Hom	0.572	0.622	0.610	4.3e-128
RGD\|61932		419	Fah "fumarylacetoacetate hydro	0.572	0.622	0.591	1.2e-125
DICTYBASE\|DDB_G0271094		427	fah "fumarylacetoacetase" [Dic	0.572	0.611	0.563	6.4e-125
MGI\|MGI:95482		419	Fah "fumarylacetoacetate hydro	0.572	0.622	0.587	2.1e-124
UNIPROTKB\|E2RS63		418	FAH "Uncharacterized protein"	0.574	0.626	0.590	2.7e-124

TAIR\|locus:2008845 FAH "AT1G12050" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1169 (416.6 bits), Expect = 2.7e-180, Sum P(2) = 2.7e-180
 Identities = 212/264 (80%), Positives = 235/264 (89%)

Query:   193 FHLPIAYHGRASSVVISGTDIVRPRGQFAXXXXXXXXXXXXQKLDFELEMAAVVGPGNEL 252
             F LPIAYHGRASS+VISGTDI+RPRGQ              +KLDFELEMAAVVGPGNEL
Sbjct:   158 FRLPIAYHGRASSIVISGTDIIRPRGQGHPQGNSEPYFGPSKKLDFELEMAAVVGPGNEL 217

Query:   253 GKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPF 312
             GKPIDVN AADHIFG++LMNDWSARDIQAWEYVPLGPFLGKSFGTT+SPWIVTLDALEPF
Sbjct:   218 GKPIDVNNAADHIFGLLLMNDWSARDIQAWEYVPLGPFLGKSFGTTISPWIVTLDALEPF 277

Query:   313 ACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAH 372
              C +PKQDP PLPYLAEK S NYDISLEVQ+KP+G++DSCV+T+SNF+ LYWT+TQQLAH
Sbjct:   278 GCQAPKQDPPPLPYLAEKESVNYDISLEVQLKPSGRDDSCVITKSNFQNLYWTITQQLAH 337

Query:   373 HTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFT 432
             HT+NGCNLR GDLLGTGTISGPEP+S GCLLELTWNGQKPLSL+G T+ FLEDGD+VTF+
Sbjct:   338 HTVNGCNLRPGDLLGTGTISGPEPDSYGCLLELTWNGQKPLSLNGTTQTFLEDGDQVTFS 397

Query:   433 GFCKGNGYTVGFGTCSGKIVPSTP 456
             G CKG+GY VGFGTC+GKIVPS P
Sbjct:   398 GVCKGDGYNVGFGTCTGKIVPSPP 421

GO:0004334 "fumarylacetoacetase activity" evidence=ISS;IDA

GO:0009072 "aromatic amino acid family metabolic process" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

GO:1902000 "homogentisate catabolic process" evidence=IDA

UNIPROTKB\|A5PKH3 FAH "Fumarylacetoacetase" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MYZ7 FAH "Fumarylacetoacetase" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NYW8 FAH "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RIF3 FAH "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|P16930 FAH "Fumarylacetoacetase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|61932 Fah "fumarylacetoacetate hydrolase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0271094 fah "fumarylacetoacetase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

MGI\|MGI:95482 Fah "fumarylacetoacetate hydrolase" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RS63 FAH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A5PKH3	FAAA_BOVIN	3, ., 7, ., 1, ., 2	0.5442	0.9035	0.9832	yes	no
P35505	FAAA_MOUSE	3, ., 7, ., 1, ., 2	0.5287	0.9035	0.9832	yes	no
Q1ZXQ1	FAAA_DICDI	3, ., 7, ., 1, ., 2	0.5273	0.9100	0.9718	yes	no
P25093	FAAA_RAT	3, ., 7, ., 1, ., 2	0.5331	0.9035	0.9832	yes	no
P16930	FAAA_HUMAN	3, ., 7, ., 1, ., 2	0.5420	0.9035	0.9832	yes	no
Q00770	FAAA_EMENI	3, ., 7, ., 1, ., 2	0.4578	0.9057	0.9582	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.7.1.2	0.946
3rd Layer	3.7.1	0.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		456
PLN02856		424	PLN02856, PLN02856, fumarylacetoacetase	0.0
TIGR01266		415	TIGR01266, fum_ac_acetase, fumarylacetoacetase	0.0
pfam09298		101	pfam09298, DUF1969, Domain of unknown function (DU	8e-41
pfam01557		207	pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA	7e-33
COG0179		266	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxo	2e-31

>gnl\|CDD\|215461 PLN02856, PLN02856, fumarylacetoacetase	Back alignment and domain information

 Score =  783 bits (2024), Expect = 0.0
 Identities = 313/458 (68%), Positives = 351/458 (76%), Gaps = 38/458 (8%)

Query: 1   MALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPIL 60
             L+SFI+V PDS FPIQNLPYGVF PE  +  RPGVAIG+YVLDLS +S+AGLF+GP+L
Sbjct: 3   SPLKSFIDVAPDSDFPIQNLPYGVFSPESGATPRPGVAIGDYVLDLSALSEAGLFDGPLL 62

Query: 61  KDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEML 120
            DSDCF QP LNKF+++GRPAWKEAR  LQ+LLS++E  LRDN+ LR+K+  PM  VEML
Sbjct: 63  SDSDCFSQPTLNKFMAMGRPAWKEARSTLQRLLSADEPALRDNSELRKKAFHPMSDVEML 122

Query: 121 LPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIF 180
           LP  IGDYTDFFSS  HA N GT+FRGP NA+  NW                        
Sbjct: 123 LPAVIGDYTDFFSSREHATNVGTMFRGPENALNPNW------------------------ 158

Query: 181 HLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAP-SGNSPPPFGPSQKLDFE 239
                        HLPI YHGRASSVV SGTDI RPRGQ  P  G+S P FGPS KLDFE
Sbjct: 159 ------------LHLPIGYHGRASSVVPSGTDIRRPRGQLHPNDGSSRPYFGPSAKLDFE 206

Query: 240 LEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTL 299
           LEMAA VGPGNELGKPI VNEA DHIFG++LMNDWSARDIQ WEYVPLGPFLGKSF TT+
Sbjct: 207 LEMAAFVGPGNELGKPIPVNEAKDHIFGLVLMNDWSARDIQKWEYVPLGPFLGKSFATTI 266

Query: 300 SPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNF 359
           SPWIVTLDALEPF CD+P QDP PLPYLAEK  K+YDISLEV IKPAG+  + VV RSNF
Sbjct: 267 SPWIVTLDALEPFRCDAPAQDPPPLPYLAEKNRKSYDISLEVAIKPAGQSKASVVCRSNF 326

Query: 360 KYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGF 418
           K+LYWTL QQLAHHT+NGCNLR GDLLG+GTISGPEP SLGCLLELTW G + +SL  G 
Sbjct: 327 KHLYWTLAQQLAHHTVNGCNLRPGDLLGSGTISGPEPGSLGCLLELTWAGSREVSLEGGT 386

Query: 419 TRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP 456
            RKFLEDGDEV  +G+CKG+GY VGFGTCSGK++P+ P
Sbjct: 387 RRKFLEDGDEVVLSGWCKGDGYRVGFGTCSGKVLPALP 424

Length = 424

>gnl\|CDD\|162276 TIGR01266, fum_ac_acetase, fumarylacetoacetase	Back alignment and domain information

>gnl\|CDD\|220168 pfam09298, DUF1969, Domain of unknown function (DUF1969)	Back alignment and domain information

>gnl\|CDD\|216570 pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase family	Back alignment and domain information

>gnl\|CDD\|223257 COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		456
PLN02856		424	fumarylacetoacetase	100.0
TIGR01266		415	fum_ac_acetase fumarylacetoacetase. This enzyme ca	100.0
KOG2843		420	consensus Fumarylacetoacetase [Carbohydrate transp	100.0
COG0179		266	MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-en	100.0
TIGR02303		245	HpaG-C-term 4-hydroxyphenylacetate degradation bif	100.0
KOG1535		217	consensus Predicted fumarylacetoacetate hydralase	100.0
PRK10691		219	hypothetical protein; Provisional	100.0
PRK15203		429	4-hydroxyphenylacetate degradation bifunctional is	100.0
PRK15203		429	4-hydroxyphenylacetate degradation bifunctional is	100.0
PRK12764		500	hypothetical protein; Provisional	100.0
PF01557		218	FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase	100.0
TIGR02305		205	HpaG-N-term 4-hydroxyphenylacetate degradation bif	100.0
TIGR03220		255	catechol_dmpE 2-oxopent-4-enoate hydratase. Member	99.87
PF09298		107	FAA_hydrolase_N: Fumarylacetoacetase N-terminal; I	99.81
PRK11342		262	mhpD 2-keto-4-pentenoate hydratase; Provisional	99.81
TIGR02312		267	HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. T	99.69
TIGR03218		263	catechol_dmpH 4-oxalocrotonate decarboxylase. Memb	99.43
COG3970		379	Fumarylacetoacetate (FAA) hydrolase family protein	99.33
COG3971		264	2-keto-4-pentenoate hydratase [Secondary metabolit	99.27
PF11010		194	DUF2848: Protein of unknown function (DUF2848); In	97.8
COG3802		333	GguC Uncharacterized protein conserved in bacteria	97.56
PF10370		50	DUF2437: Domain of unknown function (DUF2437); Int	80.55

>PLN02856 fumarylacetoacetase	Back alignment and domain information

Probab=100.00  E-value=1.8e-106  Score=834.95  Aligned_cols=418  Identities=75%  Similarity=1.300  Sum_probs=388.2

Q ss_pred             cccccccCCCCCCCCCCCCcEEEecCCCCCCceEEEECCeEEechhhhhcCCCCCCCccCCCccCcccHHHHHhcCchhH
Q 012786            3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAW   82 (456)
Q Consensus         3 ~~~~~~~~~~~~f~~~n~p~g~fs~~~~~~~r~Gv~~gd~vvDL~~~~~~~~~~~~~~~~~~~~~~~~l~~fl~~g~~~~   82 (456)
                      ++|||++++||||||+|||||+||+.+++.+|+||+|||+|+||+++...+++.+.....+.+|.+++||.|+++|+++|
T Consensus         5 ~~swv~~~~~~~F~i~NlP~Gvfs~~~~~~~r~gvaigd~vldl~~~~~~~~~~~~~~~~~~~f~~~~Ln~f~alg~~~~   84 (424)
T PLN02856          5 LKSFIDVAPDSDFPIQNLPYGVFSPESGATPRPGVAIGDYVLDLSALSEAGLFDGPLLSDSDCFSQPTLNKFMAMGRPAW   84 (424)
T ss_pred             ccccccCCCCCCCCccccCeeEEECCCCCCceeEEEeCCEEEeHHHHHhcCCCCcccccccccccCcCHHHHHhCCHHHH
Confidence            56999999999999999999999998877999999999999999999988877653222347999999999999999999


Q ss_pred             HHHHHHHHHHHhcCchhhccchhcccccccccCCcEEeCCcccCccccccccHHHHHhhchhccCCCCCCCcchhhhhhh
Q 012786           83 KEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKS  162 (456)
Q Consensus        83 ~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~v~l~~Pv~~~~~~d~~~~~~H~~~~g~~~~~~~~~~~~~~~~~~~~  162 (456)
                      +++|+.|++++.+....++++..+....++|+++|+|++|+.+++|+||+||++|+.|+|++|++.+++++|||+     
T Consensus        85 ~~~R~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~v~l~~P~~~~~~~df~~~~~Ha~n~g~~fr~~~~~l~p~~~-----  159 (424)
T PLN02856         85 KEARSTLQRLLSADEPALRDNSELRKKAFHPMSDVEMLLPAVIGDYTDFFSSREHATNVGTMFRGPENALNPNWL-----  159 (424)
T ss_pred             HHHHHHHHHHhhcCCcccccchhhhccceeehhhceEcCCCccceEEEEecHHHHHHHhhhhccCCccCCCcccc-----
Confidence            999999999998776656666666677899999999999999999999999999999999999987778899997     


Q ss_pred             cccccceeeeehhhhhhhhhhhccccCCCCCCccEEEeCCCCceeeCCCeeecCCCCcCC-CCCCCCCCCCCCCceeeeE
Q 012786          163 TSKQGIVSVLTLVYYSIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAP-SGNSPPPFGPSQKLDFELE  241 (456)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~P~~f~k~~ssv~~~g~~I~~P~g~~~~-~~~~~p~~~~s~~lD~E~E  241 (456)
                                                     +.|++|+|++|||++||++|++|.+|+.+ .+...|.|++|+++|||+|
T Consensus       160 -------------------------------~~Pv~y~gr~sSvv~sg~~I~rP~gq~~~~~~~~~p~f~~s~~lDyE~E  208 (424)
T PLN02856        160 -------------------------------HLPIGYHGRASSVVPSGTDIRRPRGQLHPNDGSSRPYFGPSAKLDFELE  208 (424)
T ss_pred             -------------------------------cCCCEEcCCCceEEcCCCceeCCCCCccCCCCCCCCcccCcCceEEEEE
Confidence                                           88999999999999999999999998655 3334499999999999999


Q ss_pred             EEEEEcCCCCCCCCCCHhHHhhhheeEEEeeccchhhHhhhhhcCCCCccccccCCCCCCccccccccCCccCCCCCCCC
Q 012786          242 MAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDP  321 (456)
Q Consensus       242 LavVIGk~l~~g~~vs~eeA~~~I~Gytl~ND~SaRdiQ~~e~~~lg~~~~KsfdtslGPwiVt~del~~~~~~~~~~d~  321 (456)
                      ||+||||++++|++|++++|++||||||++|||||||+|.|||+++|||+||+|+|+|||||||.|+++++|+..+.+||
T Consensus       209 LavVIGk~~~~g~~I~~~~A~d~IfGytl~ND~SARDiQ~wE~~plgpf~gKsF~t~igPwIVt~dal~p~r~~~~~~dp  288 (424)
T PLN02856        209 MAAFVGPGNELGKPIPVNEAKDHIFGLVLMNDWSARDIQKWEYVPLGPFLGKSFATTISPWIVTLDALEPFRCDAPAQDP  288 (424)
T ss_pred             EEEEECcCccccCCCCHHHHHhhheEEEEeeechhhhhhhhhcccCCcccccCCCCCCcCeEEcccccccccccccccCc
Confidence            99999999888999999999999999999999999999999999999999999999999999999999999999899999


Q ss_pred             CCCccccccCCCceeEEEEEEEeeCCCCCCeEEEecccccccCCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCc
Q 012786          322 QPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGC  401 (456)
Q Consensus       322 ~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd  401 (456)
                      ..+|||++++..+++|+|+|.++.+++.||+++|++|+++|||+++|||+|++|++|+|+|||||+||||+|+++.+.||
T Consensus       289 ~~l~yl~~~~~~~~~i~l~v~v~~nG~~ng~~~q~~nt~~M~ws~~qlIah~~s~g~tL~pGDLi~TGTpsG~~~~~~G~  368 (424)
T PLN02856        289 PPLPYLAEKNRKSYDISLEVAIKPAGQSKASVVCRSNFKHLYWTLAQQLAHHTVNGCNLRPGDLLGSGTISGPEPGSLGC  368 (424)
T ss_pred             ccccccccccccceeEEEEEEEeeCCcccceeEEcCCHHHcCCCHHHHHHHHHhCCeecCCCCEEEeCCCCCCccCCCCC
Confidence            99999999998999999999887666668999999999999999999999877999999999999999999999999999


Q ss_pred             EEEEEecCccceec-CCCCCCCCCCCCEEEEEEEEeCCCceeeeeceeeEEeeCCC
Q 012786          402 LLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP  456 (456)
Q Consensus       402 ~lE~~~~G~~~l~~-~~~~~~fL~~GD~V~~~~~~~~~~~~~g~G~~~~~v~p~~~  456 (456)
                      ++|++|+|++++++ +++.++||+|||+|+|++||.++|++||||+|+++|+||.+
T Consensus       369 llElt~~G~~p~~l~~g~~r~fL~dGD~V~l~g~~~~~g~~igfG~~~g~v~pa~~  424 (424)
T PLN02856        369 LLELTWAGSREVSLEGGTRRKFLEDGDEVVLSGWCKGDGYRVGFGTCSGKVLPALP  424 (424)
T ss_pred             EEEEEeCCccceEeccCCccccCCCCCEEEEEEEECCCCccEeeeeeeeEEecCCC
Confidence            99999999999999 78889999999999999999999999999999999999964

>TIGR01266 fum_ac_acetase fumarylacetoacetase	Back alignment and domain information

>KOG2843 consensus Fumarylacetoacetase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>TIGR02303 HpaG-C-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit	Back alignment and domain information

>KOG1535 consensus Predicted fumarylacetoacetate hydralase [General function prediction only]	Back alignment and domain information

>PRK10691 hypothetical protein; Provisional	Back alignment and domain information

>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional	Back alignment and domain information

>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional	Back alignment and domain information

>PRK12764 hypothetical protein; Provisional	Back alignment and domain information

>PF01557 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase family Mutations in Swiss:P16930 cause inherited tyrosinemia type I	Back alignment and domain information

>TIGR02305 HpaG-N-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit	Back alignment and domain information

>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase	Back alignment and domain information

>PF09298 FAA_hydrolase_N: Fumarylacetoacetase N-terminal; InterPro: IPR015377 Fumarylacetoacetase (3	Back alignment and domain information

>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional	Back alignment and domain information

>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase	Back alignment and domain information

>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase	Back alignment and domain information

>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]	Back alignment and domain information

>COG3971 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PF11010 DUF2848: Protein of unknown function (DUF2848); InterPro: IPR021269 This bacterial family of proteins has no known function	Back alignment and domain information

>COG3802 GguC Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF10370 DUF2437: Domain of unknown function (DUF2437); InterPro: IPR018833 This entry represents the N-terminal 50 amino acids of a group of bacterial proteins often annotated as fumarylacetoacetate hydrolase-containing enzymes	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		456
1qqj_A		419	Crystal Structure Of Mouse Fumarylacetoacetate Hydr		1e-131
1qco_A		423	Crystal Structure Of Fumarylacetoacetate Hydrolase		1e-131
1hyo_A		421	Crystal Structure Of Fumarylacetoacetate Hydrolase		1e-131
1qcn_A		421	Crystal Structure Of Fumarylacetoacetate Hydrolase		1e-126

>pdb|1QQJ|A Chain A, Crystal Structure Of Mouse Fumarylacetoacetate Hydrolase Refined At 1.55 Angstrom Resolution Length = 419

Back alignment and structure

Iteration: 1

Score = 466 bits (1199), Expect = e-131, Method: Compositional matrix adjust. Identities = 235/452 (51%), Positives = 288/452 (63%), Gaps = 40/452 (8%) Query: 5 SFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPIL-KDS 63 SFI V DS FPIQNLPYGVF + R GVAIG+ +LDLS I LF GP L K Sbjct: 2 SFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKH--LFTGPALSKHQ 59 Query: 64 DCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPM 123 F + LN F+ LG+ AWKEAR LQ LLS+++A LRD+ LRQ++ M LP Sbjct: 60 HVFDETTLNNFMGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHLPA 119 Query: 124 EIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIFHLQ 183 IGDYTDF+SS HA N G +FRG NA+ NW Sbjct: 120 TIGDYTDFYSSRQHATNVGIMFRGKENALLPNW--------------------------- 152 Query: 184 VYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAXXXXXXXXXXXXQKLDFELEMA 243 HLP+ YHGRASS+V+SGT I RP GQ + LD ELEMA Sbjct: 153 ---------LHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELEMA 203 Query: 244 AVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWI 303 VGPGN G+PI +++A +HIFG++LMNDWSARDIQ WEYVPLGPFLGKSFGTT+SPW+ Sbjct: 204 FFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISPWV 263 Query: 304 VTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLY 363 V +DAL PF +PKQDP+PLPYL +DI+L V +K G + + RSNFK++Y Sbjct: 264 VPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHMY 323 Query: 364 WTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKF 422 WT+ QQL HH++NGCNLR GDLL +GTISG +PES G +LEL+W G K + + G TR F Sbjct: 324 WTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGSMLELSWKGTKAIDVGQGQTRTF 383 Query: 423 LEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 454 L DGDEV TG C+G+GY VGFG C+GK++P+ Sbjct: 384 LLDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 415

PyMOL of 1qqj

>pdb|1QCO|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase Complexed With Fumarate And Acetoacetate Length = 423

Back alignment and structure

>pdb|1HYO|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase Complexed With 4-(Hydroxymethylphosphinoyl)-3-Oxo-Butanoic Acid Length = 421

Back alignment and structure

>pdb|1QCN|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase Length = 421

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		456
1hyo_A		421	Fumarylacetoacetate hydrolase; beta-sandwich roll;	1e-177
3lzk_A		359	Fumarylacetoacetate hydrolase family protein; stru	6e-31
3r6o_A		329	2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssg	4e-19
3rr6_A		265	Putative uncharacterized protein; structural genom	2e-14
1wzo_A		246	HPCE; structural genomics, riken structural genomi	2e-14
1gtt_A		429	4-hydroxyphenylacetate degradation bifunctional is	5e-14
1gtt_A		429	4-hydroxyphenylacetate degradation bifunctional is	3e-12
2dfu_A		264	Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;	9e-14
1saw_A		225	Hypothetical protein FLJ36880; structural genomics	9e-14
3l53_A		224	Putative fumarylacetoacetate isomerase/hydrolase;	3e-13
3s52_A		221	Putative fumarylacetoacetate hydrolase family Pro;	4e-13
2q18_X		293	2-keto-3-deoxy-D-arabinonate dehydratase; FAH-fami	4e-13
1nkq_A		259	Hypothetical 28.8 kDa protein in PSD1-SKO1 interge	1e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A Length = 421	Back alignment and structure

 Score =  501 bits (1292), Expect = e-177
 Identities = 234/454 (51%), Positives = 290/454 (63%), Gaps = 38/454 (8%)

Query: 2   ALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILK 61
              SFI V  DS FPIQNLPYGVF  +     R GVAIG+ +LDLS I         + K
Sbjct: 1   GSMSFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKHLFTGPA-LSK 59

Query: 62  DSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLL 121
               F +  LN F+ LG+ AWKEAR  LQ LLS+++A LRD+  LRQ++        M L
Sbjct: 60  HQHVFDETTLNNFMGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHL 119

Query: 122 PMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIFH 181
           P  IGDYTDF+SS  HA N G +FRG  NA+  NW                         
Sbjct: 120 PATIGDYTDFYSSRQHATNVGIMFRGKENALLPNWL------------------------ 155

Query: 182 LQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELE 241
                       HLP+ YHGRASS+V+SGT I RP GQ  P  + PP +G  + LD ELE
Sbjct: 156 ------------HLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELE 203

Query: 242 MAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSP 301
           MA  VGPGN  G+PI +++A +HIFG++LMNDWSARDIQ WEYVPLGPFLGKSFGTT+SP
Sbjct: 204 MAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISP 263

Query: 302 WIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKY 361
           W+V +DAL PF   +PKQDP+PLPYL       +DI+L V +K  G   +  + RSNFK+
Sbjct: 264 WVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKH 323

Query: 362 LYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTR 420
           +YWT+ QQL HH++NGCNLR GDLL +GTISG +PES G +LEL+W G K + +  G TR
Sbjct: 324 MYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGSMLELSWKGTKAIDVGQGQTR 383

Query: 421 KFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 454
            FL DGDEV  TG C+G+GY VGFG C+GK++P+
Sbjct: 384 TFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 417

PyMOL of 1hyo

>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti} Length = 359	Back alignment and structure

>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus} Length = 329	Back alignment and structure

>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A Length = 265	Back alignment and structure

>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus} Length = 246	Back alignment and structure

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A Length = 429	Back alignment and structure

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A Length = 429	Back alignment and structure

>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus} Length = 264	Back alignment and structure

>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1 Length = 225	Back alignment and structure

>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} PDB: 1nr9_A Length = 221	Back alignment and structure

>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A Length = 293	Back alignment and structure

>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1 Length = 259	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		456
1hyo_A		421	Fumarylacetoacetate hydrolase; beta-sandwich roll;	100.0
3lzk_A		359	Fumarylacetoacetate hydrolase family protein; stru	100.0
3r6o_A		329	2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssg	100.0
4dbf_A		288	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxa	100.0
3rr6_A		265	Putative uncharacterized protein; structural genom	100.0
2dfu_A		264	Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;	100.0
1wzo_A		246	HPCE; structural genomics, riken structural genomi	100.0
3l53_A		224	Putative fumarylacetoacetate isomerase/hydrolase;	100.0
3s52_A		221	Putative fumarylacetoacetate hydrolase family Pro;	100.0
2q18_X		293	2-keto-3-deoxy-D-arabinonate dehydratase; FAH-fami	100.0
1saw_A		225	Hypothetical protein FLJ36880; structural genomics	100.0
1gtt_A		429	4-hydroxyphenylacetate degradation bifunctional is	100.0
1nkq_A		259	Hypothetical 28.8 kDa protein in PSD1-SKO1 interge	100.0
1gtt_A		429	4-hydroxyphenylacetate degradation bifunctional is	100.0
2eb4_A		267	2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60	100.0
2wqt_A		270	2-keto-4-pentenoate hydratase; lyase, dodecahedral	100.0

>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A	Back alignment and structure

Probab=100.00  E-value=3.1e-94  Score=748.78  Aligned_cols=415  Identities=57%  Similarity=1.055  Sum_probs=370.1

Q ss_pred             cccccccCCCCCCCCCCCCcEEEecCCCCCCceEEEECCeEEechhhhhcCCCCCCC-ccCCCccCcccHHHHHhcCchh
Q 012786            3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPI-LKDSDCFLQPNLNKFLSLGRPA   81 (456)
Q Consensus         3 ~~~~~~~~~~~~f~~~n~p~g~fs~~~~~~~r~Gv~~gd~vvDL~~~~~~~~~~~~~-~~~~~~~~~~~l~~fl~~g~~~   81 (456)
                      .+|||+++.+++|||+|||||+|++.+++.+|+|+++||+|+||+++..  .+.... ...+++|.+++|++||++|++.
T Consensus         2 ~~s~~~~~~~~~f~~~nlp~g~f~~~~~~~~r~Gv~igd~v~DL~~~~~--~~~~~~~~~~~~~~~~~tL~~~l~~g~~~   79 (421)
T 1hyo_A            2 SMSFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKH--LFTGPALSKHQHVFDETTLNNFMGLGQAA   79 (421)
T ss_dssp             -CCSSCCCTTCSCCTTTCCEEEEECSSCCSCEEEEEETTEEEETTTTGG--GCCSTTTTTCGGGGGSSSSHHHHHHCHHH
T ss_pred             CcccccCCCCCCCCccCceEEEEEeCCCCceEEEEEeCCEEEeHHHhHh--hcccccccccccccCCcCHHHHHhcChHH
Confidence            4799999999999999999999999777889999999999999987754  222111 1124577889999999999999


Q ss_pred             HHHHHHHHHHHHhcCchhhccchhcccccccccCCcEEeCCcccCccccccccHHHHHhhchhccCCCCCCCcchhhhhh
Q 012786           82 WKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILK  161 (456)
Q Consensus        82 ~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~v~l~~Pv~~~~~~d~~~~~~H~~~~g~~~~~~~~~~~~~~~~~~~  161 (456)
                      |.++|+.|++++......++++..+.....+|+++|+|++|+++++|+||++|++|+.|++++|++.+++++|||+    
T Consensus        80 ~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~v~ll~P~~~~~y~df~~~~~Ha~~~g~~~r~~~~~~~p~~~----  155 (421)
T 1hyo_A           80 WKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHLPATIGDYTDFYSSRQHATNVGIMFRGKENALLPNWL----  155 (421)
T ss_dssp             HHHHHHHHHHHHTTSSTHHHHCHHHHHHHEEESTTCEEECSSCCSCEEEECCCHHHHHHHHHHHHCGGGCSCTTTT----
T ss_pred             HHHHHHHHHHHhhccCccccccccccccccccHhHCeEcCCcccCcEEEEechHHHHHHHHhhhccccccCCCCcC----
Confidence            9999999999886543333333333345578999999999999999999999999999999988876667789997    


Q ss_pred             hcccccceeeeehhhhhhhhhhhccccCCCCCCccEEEeCCCCceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeE
Q 012786          162 STSKQGIVSVLTLVYYSIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELE  241 (456)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~P~~f~k~~ssv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~E  241 (456)
                                                      +.|++|+|++|||+++|++|.+|.+++.+.++..|.|.+++++|||+|
T Consensus       156 --------------------------------~~Pv~f~k~~ssvv~~g~~I~~P~~~~~~~~~~~p~~~~s~~lD~E~E  203 (421)
T 1hyo_A          156 --------------------------------HLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELE  203 (421)
T ss_dssp             --------------------------------TSCCEEECCSTTEEETTCCEECCEEEECSCTTSCCEEEECSCEECBEE
T ss_pred             --------------------------------CCCEEEEcccceEEcCCCeEECCCCcccCccccccccccccCceEEEE
Confidence                                            789999999999999999999999877665555688888999999999


Q ss_pred             EEEEEcCCCCCCCCCCHhHHhhhheeEEEeeccchhhHhhhhhcCCCCccccccCCCCCCccccccccCCccCCCCCCCC
Q 012786          242 MAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDP  321 (456)
Q Consensus       242 LavVIGk~l~~g~~vs~eeA~~~I~Gytl~ND~SaRdiQ~~e~~~lg~~~~KsfdtslGPwiVt~del~~~~~~~~~~d~  321 (456)
                      |||||||+++.|++|++++|++||+||+++||||+||+|.|+++++||++||+|+|+|||||||.|+|+++|+..+.+||
T Consensus       204 LavvIG~~~~~g~~v~~~~A~~~I~Gy~l~ND~SaRdiQ~~e~~plg~~~aK~f~t~iGPwivt~d~l~p~~~~~~~~~~  283 (421)
T 1hyo_A          204 MAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDP  283 (421)
T ss_dssp             EEEEECSCCCTTCCCCHHHHGGGEEEEEEEECCEEHHHHHHHCTTTCCCHHHHTCEEECSCBEEHHHHGGGEECCCCCSS
T ss_pred             EEEEECcccccCCCCCHHHHHHhhcEEEEEEeccHHhhhhhhcccCCCccccCcCCCCCCeecchhhcccccccccccCC
Confidence            99999999887899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccCCCceeEEEEEEEeeCCCCCCeEEEecccccccCCHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCc
Q 012786          322 QPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGC  401 (456)
Q Consensus       322 ~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd  401 (456)
                      +++|||+++++..++|++++++|++++.||+++|++|+++|+|+++|||+|++|++|+|+|||||+||||+|++..+.||
T Consensus       284 ~~l~~l~~~~~~~~~l~l~~~vN~~~~~~Ge~~q~~~~~~m~~~~~~lIa~lss~g~tL~pGDlI~TGTpsG~~~~~~G~  363 (421)
T 1hyo_A          284 KPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGS  363 (421)
T ss_dssp             CCCGGGCCCSCCEECCEEEEEEECTTCSSCEEEEEEETTCCSSCHHHHHHHHHTTSCCCCTTCEEECCCCCCSSGGGCCB
T ss_pred             cccccccccCCCccceEEEEEEecCCCCCCEEEEecCHHhhcCCHHHHHHHHHHCCCccCCCCEEEcCCCCCCCCCCCcc
Confidence            99999998877877888888876555445999999999999999999999996799999999999999999999999999


Q ss_pred             EEEEEecCccceec-CCCCCCCCCCCCEEEEEEEEeCCCceeeeeceeeEEeeCC
Q 012786          402 LLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPST  455 (456)
Q Consensus       402 ~lE~~~~G~~~l~~-~~~~~~fL~~GD~V~~~~~~~~~~~~~g~G~~~~~v~p~~  455 (456)
                      ++|++++|++++++ ++.+++||||||+|+++++|.++|++||||+|+|+|+|+.
T Consensus       364 ~lE~~~~G~~~v~l~~g~~~~fL~~GD~V~~~~~~~~~g~~igfG~~~~~V~~a~  418 (421)
T 1hyo_A          364 MLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPAL  418 (421)
T ss_dssp             HHHHTTTTTSCEECSTTCEESSCCTTCEEEEEEEEECSSCEEEEEEEEEEEECCC
T ss_pred             eEEEEecCcceeeccCCCCCccCCCCCEEEEEEEECCCCceeeeeeeEEEEecCC
Confidence            99999999999999 7778999999999999999988999999999999999985

PyMOL of 1hyo

>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti}	Back alignment and structure

>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus}	Back alignment and structure

>4dbf_A 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxaloacetate decarboxylase; 1.90A {Corynebacterium glutamicum} PDB: 4dbh_A	Back alignment and structure

>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A	Back alignment and structure

>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus}	Back alignment and structure

>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus}	Back alignment and structure

>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} SCOP: d.177.1.1 PDB: 1nr9_A	Back alignment and structure

>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A	Back alignment and structure

>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1	Back alignment and structure

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A	Back alignment and structure

>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1	Back alignment and structure

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A	Back alignment and structure

>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A	Back alignment and structure

>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic hydrocarbons catabolism; 2.80A {Escherichia coli} PDB: 1sv6_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		456
d1hyoa2		298	d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolas	1e-108
d1hyoa1		118	b.34.8.1 (A:1-118) Fumarylacetoacetate hydrolase,	5e-41
d1nkqa_		257	d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker	5e-15
d1sawa_		217	d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Hom	3e-07
d1gtta2		216	d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degra	1e-04

>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 298	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Fumarylacetoacetate hydrolase, FAH, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  320 bits (822), Expect = e-108
 Identities = 178/331 (53%), Positives = 221/331 (66%), Gaps = 37/331 (11%)

Query: 125 IGDYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIFHLQV 184
           IGDYTDF+SS  HA N G +FRG  NA+  NW                            
Sbjct: 3   IGDYTDFYSSRQHATNVGIMFRGKENALLPNWL--------------------------- 35

Query: 185 YRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAA 244
                    HLP+ YHGRASS+V+SGT I RP GQ  P  + PP +G  + LD ELEMA 
Sbjct: 36  ---------HLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELEMAF 86

Query: 245 VVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIV 304
            VGPGN  G+PI +++A +HIFG++LMNDWSARDIQ WEYVPLGPFLGKSFGTT+SPW+V
Sbjct: 87  FVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISPWVV 146

Query: 305 TLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYW 364
            +DAL PF   +PKQDP+PLPYL       +DI+L V +K  G   +  + RSNFK++YW
Sbjct: 147 PMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHMYW 206

Query: 365 TLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKFL 423
           T+ QQL HH++NGCNLR GDLL +GTISG +PES G +LEL+W G K + +  G TR FL
Sbjct: 207 TMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGSMLELSWKGTKAIDVGQGQTRTFL 266

Query: 424 EDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 454
            DGDEV  TG C+G+GY VGFG C+GK++P+
Sbjct: 267 LDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 297

PyMOL of d1hyoa2

>d1hyoa1 b.34.8.1 (A:1-118) Fumarylacetoacetate hydrolase, FAH, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 118	Back information, alignment and structure

>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 257	Back information, alignment and structure

>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]} Length = 217	Back information, alignment and structure

>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]} Length = 216	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		456
d1hyoa2		298	Fumarylacetoacetate hydrolase, FAH, C-terminal dom	100.0
d1nr9a_		221	Putative isomerase YcgM {Escherichia coli [TaxId:	100.0
d1sawa_		217	FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [Tax	100.0
d1gtta1		213	4-hydroxyphenylacetate degradation bifunctional is	100.0
d1gtta2		216	4-hydroxyphenylacetate degradation bifunctional is	100.0
d1nkqa_		257	Hypothetical protein Ynl168c {Baker's yeast (Sacch	100.0
d1hyoa1		118	Fumarylacetoacetate hydrolase, FAH, N-terminal dom	99.94
d1sv6a_		261	2-keto-4-pentenoate hydratase MhpD {Escherichia co	99.71

>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Fumarylacetoacetate hydrolase, FAH, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.3e-77  Score=595.29  Aligned_cols=295  Identities=60%  Similarity=1.155  Sum_probs=279.5

Q ss_pred             cCccccccccHHHHHhhchhccCCCCCCCcchhhhhhhcccccceeeeehhhhhhhhhhhccccCCCCCCccEEEeCCCC
Q 012786          125 IGDYTDFFSSMHHAKNCGTIFRGPANAVPANWYVILKSTSKQGIVSVLTLVYYSIFHLQVYRVVPYFRFHLPIAYHGRAS  204 (456)
Q Consensus       125 ~~~~~d~~~~~~H~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~P~~f~k~~s  204 (456)
                      +.+|+||+||++|++|+|++|+++.++++|+|+                                    +.|++|+|++|
T Consensus         3 ~~~~~Df~~~~~Ha~~~~~~~r~~~~~lpp~~~------------------------------------~~Pv~f~~~~s   46 (298)
T d1hyoa2           3 IGDYTDFYSSRQHATNVGIMFRGKENALLPNWL------------------------------------HLPVGYHGRAS   46 (298)
T ss_dssp             CSCEEEECCCHHHHHHHHHHHHCGGGCSCTTTT------------------------------------TSCCEEECCST
T ss_pred             ccccceeccHHHHHHHHHHhhcCCCCCCCcccc------------------------------------cCCCEEcCCCC
Confidence            578999999999999999999988888999997                                    88999999999


Q ss_pred             ceeeCCCeeecCCCCcCCCCCCCCCCCCCCCceeeeEEEEEEcCCCCCCCCCCHhHHhhhheeEEEeeccchhhHhhhhh
Q 012786          205 SVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEY  284 (456)
Q Consensus       205 sv~~~g~~I~~P~g~~~~~~~~~p~~~~s~~lD~E~ELavVIGk~l~~g~~vs~eeA~~~I~Gytl~ND~SaRdiQ~~e~  284 (456)
                      ||++||++|++|.+++.+.++..|.+++++++|||+|||+||||++..|++|++++|++||+|||++||||+||+|..++
T Consensus        47 sivg~g~~I~~P~g~~~~~~~~~p~~~~s~~lDyE~EL~vVIG~~~~~g~~i~~e~A~d~I~Gyti~NDvSaRd~Q~~~~  126 (298)
T d1hyoa2          47 SIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQWEY  126 (298)
T ss_dssp             TEEETTCCEECCEEEECSCTTSCCEEEECSCEECBEEEEEEECSCCCTTCCCCHHHHGGGEEEEEEEECCEEHHHHHHHC
T ss_pred             eEECCCCCEeCCCcceecCccCCCccCcccceeeeceEEEEEecccccCccCCHHHHHHHHHHHhhhhhhhHHHHHHhhc
Confidence            99999999999998776666666888889999999999999999877799999999999999999999999999999999


Q ss_pred             cCCCCccccccCCCCCCccccccccCCccCCCCCCCCCCCccccccCCCceeEEEEEEEeeCCCCCCeEEEecccccccC
Q 012786          285 VPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYW  364 (456)
Q Consensus       285 ~~lg~~~~KsfdtslGPwiVt~del~~~~~~~~~~d~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~  364 (456)
                      .+++|++||+|+|++||||||++++.++++..+..||+.++++++..+..++++|++++|++.++||+++|++|+++|+|
T Consensus       127 ~~~~~~~gK~f~tpiGP~ivt~~~l~p~~~~~~~~dp~~~~~~~~~~~~~~dl~l~~~lng~~~~ng~~~q~~nt~dMif  206 (298)
T d1hyoa2         127 VPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHMYW  206 (298)
T ss_dssp             TTTCCCHHHHTCEEECSCBEEHHHHGGGEECCCCCSSCCCGGGCCCSCCEECCEEEEEEECTTCSSCEEEEEEETTCCSS
T ss_pred             cCCCcccccCCCCCCCCeEccchhcCcccccccccCccccccccccCCCCccceEEEEEEEEEeecCeEEecCcHHhcCC
Confidence            88999999999999999999999999999888888999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHcCcccCCCCEEEcCCCCCCcCCCCCcEEEEEecCccceec-CCCCCCCCCCCCEEEEEEEEeCCCceee
Q 012786          365 TLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVG  443 (456)
Q Consensus       365 s~~qlIa~l~S~~~tL~pGDvI~TGTp~Gvg~~~~Gd~lE~~~~G~~~l~~-~~~~~~fL~~GD~V~~~~~~~~~~~~~g  443 (456)
                      +++|+|+|++|++|||+|||||+||||+|++.++.||++|++++|++++.+ .+++++||++||+|+||++|+.+|.+||
T Consensus       207 ~~~e~Ia~~~S~~~tL~pGDlI~TGTP~G~~~~~~Gd~le~~~~G~~~i~~~~g~~~~~L~~GD~V~ie~~~~~~g~~ig  286 (298)
T d1hyoa2         207 TMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVG  286 (298)
T ss_dssp             CHHHHHHHHHTTSCCCCTTCEEECCCCCCSSGGGCCBHHHHTTTTTSCEECSTTCEESSCCTTCEEEEEEEEECSSCEEE
T ss_pred             CHHHHHHHHHhCceeechhhEEEecCCCCCCCCCCCcEEEEEecccceeecCCCCCcccCCCCCEEEEEEEEcCCCceEe
Confidence            999999997689999999999999999999999999999999999999999 7778899999999999999999999999


Q ss_pred             eeceeeEEeeCC
Q 012786          444 FGTCSGKIVPST  455 (456)
Q Consensus       444 ~G~~~~~v~p~~  455 (456)
                      ||+|+|+|+||.
T Consensus       287 fG~~~~~v~pa~  298 (298)
T d1hyoa2         287 FGQCAGKVLPAL  298 (298)
T ss_dssp             EEEEEEEEECCC
T ss_pred             ccceEEEEecCC
Confidence            999999999985

PyMOL of d1hyoa2

>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1hyoa1 b.34.8.1 (A:1-118) Fumarylacetoacetate hydrolase, FAH, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure