Citrus Sinensis ID: 012835


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-----
MDNQENPTEIVNKNTASEDDHHFAISIKSLVSSLEHMMADDNISISSNCCIFRNPVILSCHNQKAFAPNGFSVGPFHHGEDHLKLNEKIKLRYLQGLLRRWPNPKEKLTELLEEITSVEGLARECYAEPIRFDKEQFVRILVVDGCFIIESFRKHSNEVSKEPDDPIFSMACLMELLNHDLVLLENQIPWFVLERLFVLTLNQEVPGNMDLIRLVLQFFQGLFSSDTIQINSDQYRSHKIKHILDLLRYSLILPIRSEKYTEKNAGWEPFSCAAKINEAGIEFSRKRDYSTILDIKFYNGTLDIPPLAIHETTETIFRNLISFEQCYPNCDPFITSYAKFMDNLIYTTKDVDLLTEKGILNNWLDPDDATLYFNKLYNDTHVKKFYYDDLCKQVNEYCRSWWNKTRYFYMHNYFGTPWAIVSQIAATFLLLFTFLQTYYTIVGGVQKPIRGSTYS
ccccccccccccccccccccccEEEEHHHHHHHHHHHHHccccccccccEEEEccccccccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHccEEEEcccccccEEEEEcccccccccEEEEcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHccHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
ccccccccccccccccccccccEEEEHHHHHHHHHHHHcccccccccccEEEEccHHHHHccHHccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccHHHHHHcccEEEEccccccEEEEEEcccEEEccEEEEcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHcccEEcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
mdnqenpteivnkntaseddhHFAISIKSLVSSLEHmmaddnisissnccifrnpvilschnqkafapngfsvgpfhhgedhlKLNEKIKLRYLQGLlrrwpnpkeKLTELLEEITSVEGlarecyaepirfdkeQFVRILVVDGCFIIESFRkhsnevskepddpifSMACLMELLNHDLVLLENQIPWFVLERLFVLTlnqevpgnmDLIRLVLQFFQGlfssdtiqinsdqyRSHKIKHILDLLRYSLilpirsekyteknagwepfsCAAKINEAGiefsrkrdystILDIkfyngtldipplaiheTTETIFRNLISFeqcypncdpfiTSYAKFMDnliyttkdvdLLTEkgilnnwldpddatLYFNKLYNDTHVKKFYYDDLCKQVNEYCRSWWNKTRYFYMHNYFGTPWAIVSQIAATFLLLFTFLQTYYTIVggvqkpirgstys
MDNQENPTEIVNkntaseddhhFAISIKSLVSSLEHMMADDNISISSNCCIFRNPVILSCHNQKAFAPNGFSVGPFHHGEDHLKLNEKIKLRYLQGLLRRWPNPKEKLTELLEEITSVEGLARECYAEPIRFDKEQFVRILVVDGCFIIESfrkhsnevskepDDPIFSMACLMELLNHDLVLLENQIPWFVLERLFVLTLNQEVPGNMDLIRLVLQFFQGLFSSDTIQINSDQYRSHKIKHILDLLRYSLILPIRSEKYteknagwepfSCAAKINEAGIEFSRKRDYSTILDIKFYNGTLDIPPLAIHETTETIFRNLISFEQCYPNCDPFITSYAKFMDNLIYTTKDVDLLTEKGILNNWLDPDDATLYFNKLYNDTHVKKFYYDDLCKQVNEYCRSWWNKTRYFYMHNYFGTPWAIVSQIAATFLLLFTFLQTYYTIVggvqkpirgstys
MDNQENPTEIVNKNTASEDDHHFAISIKSLVSSLEHMMADDNISISSNCCIFRNPVILSCHNQKAFAPNGFSVGPFHHGEDHLKLNEKIKLRYLQGLLRRWPNPkekltelleeITSVEGLARECYAEPIRFDKEQFVRILVVDGCFIIESFRKHSNEVSKEPDDPIFSMACLMELLNHDLVLLENQIPWFVLERLFVLTLNQEVPGNMDLIRLVLQFFQGLFSSDTIQINSDQYRSHKIKHILDLLRYSLILPIRSEKYTEKNAGWEPFSCAAKINEAGIEFSRKRDYSTILDIKFYNGTLDIPPLAIHETTETIFRNLISFEQCYPNCDPFITSYAKFMDNLIYTTKDVDLLTEKGILNNWLDPDDATLYFNKLYNDTHVKKFYYDDLCKQVNEYCRSWWNKTRYFYMHNYFGTPWAIVSqiaatflllftflqtyytiVGGVQKPIRGSTYS
*********************HFAISIKSLVSSLEHMMADDNISISSNCCIFRNPVILSCHNQKAFAPNGFSVGPFHHGEDHLKLNEKIKLRYLQGLLRRWPNPKEKLTELLEEITSVEGLARECYAEPIRFDKEQFVRILVVDGCFIIESFRK***********PIFSMACLMELLNHDLVLLENQIPWFVLERLFVLTLNQEVPGNMDLIRLVLQFFQGLFSSDTIQINSDQYRSHKIKHILDLLRYSLILPIRSEKYTEKNAGWEPFSCAAKINEAGIEFSRKRDYSTILDIKFYNGTLDIPPLAIHETTETIFRNLISFEQCYPNCDPFITSYAKFMDNLIYTTKDVDLLTEKGILNNWLDPDDATLYFNKLYNDTHVKKFYYDDLCKQVNEYCRSWWNKTRYFYMHNYFGTPWAIVSQIAATFLLLFTFLQTYYTIVGGVQ*********
****************************SLV****************NCCIFRNPVILSCHNQKAFAPNGFSVGPFHHGEDHLKLNEKIKLRYLQGLLRRWPNPKEKLTELLEEITSVEGLARECYAEPIRFDKEQFVRILVVDGCFIIESFRKHSNEVSKEPDDPIFSMACLMELLNHDLVLLENQIPWFVLERLFVLTLNQEVPGNMDLIRLVLQFFQGLFSSDTIQINSDQYRSHKIKHILDLLRYSLILPIRSEKYTEKNAGWEPFSCAAKINEAGIEFSRKRDYSTILDIKFYNGTLDIPPLAIHETTETIFRNLISFEQCYPNCDPFITSYAKFMDNLIYTTKDVDLLTEKGILNNWLDPDDATLYFNKLYNDTHVKKFYYDDLCKQVNEYCRSWWNKTRYFYMHNYFGTPWAIVSQIAATFLLLFTFLQTYYTIV*************
*********IVNKNTASEDDHHFAISIKSLVSSLEHMMADDNISISSNCCIFRNPVILSCHNQKAFAPNGFSVGPFHHGEDHLKLNEKIKLRYLQGLLRRWPNPKEKLTELLEEITSVEGLARECYAEPIRFDKEQFVRILVVDGCFIIESFRKHSNEVSKEPDDPIFSMACLMELLNHDLVLLENQIPWFVLERLFVLTLNQEVPGNMDLIRLVLQFFQGLFSSDTIQINSDQYRSHKIKHILDLLRYSLILPIRSEKYTEKNAGWEPFSCAAKINEAGIEFSRKRDYSTILDIKFYNGTLDIPPLAIHETTETIFRNLISFEQCYPNCDPFITSYAKFMDNLIYTTKDVDLLTEKGILNNWLDPDDATLYFNKLYNDTHVKKFYYDDLCKQVNEYCRSWWNKTRYFYMHNYFGTPWAIVSQIAATFLLLFTFLQTYYTIVGGVQKPIRGSTYS
********************HHFAISIKSLVSSLEHMMADDNISISSNCCIFRNPVILSCHNQKAFAPNGFSVGPFHHGEDHLKLNEKIKLRYLQGLLRRWPNPKEKLTELLEEITSVEGLARECYAEPIRFDKEQFVRILVVDGCFIIESFRKHSNEVSKEPDDPIFSMACLMELLNHDLVLLENQIPWFVLERLFVLTLNQEVPGNMDLIRLVLQFFQGLFSSDTIQINSDQYRSHKIKHILDLLRYSLILPIR********AGWEPFSCAAKINEAGIEFSRKRDYSTILDIKFYNGTLDIPPLAIHETTETIFRNLISFEQCYPNCDPFITSYAKFMDNLIYTTKDVDLLTEKGILNNWLDPDDATLYFNKLYNDTHVKKFYYDDLCKQVNEYCRSWWNKTRYFYMHNYFGTPWAIVSQIAATFLLLFTFLQTYYTIVGGVQK********
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MDNQENPTEIVNKNTASEDDHHFAISIKSLVSSLEHMMADDNISISSNCCIFRNPVILSCHNQKAFAPNGFSVGPFHHGEDHLKLNEKIKLRYLQGLLRRWPNPKEKLTELLEEITSVEGLARECYAEPIRFDKEQFVRILVVDGCFIIESFRKHSNEVSKEPDDPIFSMACLMELLNHDLVLLENQIPWFVLERLFVLTLNQEVPGNMDLIRLVLQFFQGLFSSDTIQINSDQYRSHKIKHILDLLRYSLILPIRSEKYTEKNAGWEPFSCAAKINEAGIEFSRKRDYSTILDIKFYNGTLDIPPLAIHETTETIFRNLISFEQCYPNCDPFITSYAKFMDNLIYTTKDVDLLTEKGILNNWLDPDDATLYFNKLYNDTHVKKFYYDDLCKQVNEYCRSWWNKTRYFYMHNYFGTPWAIVSQIAATFLLLFTFLQTYYTIVGGVQKPIRGSTYS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query455 2.2.26 [Sep-21-2011]
Q9SD53476 UPF0481 protein At3g47200 no no 0.852 0.815 0.296 5e-46
P0C897529 Putative UPF0481 protein no no 0.474 0.408 0.284 2e-12
>sp|Q9SD53|Y3720_ARATH UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1 SV=1 Back     alignment and function desciption
 Score =  185 bits (470), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 125/421 (29%), Positives = 212/421 (50%), Gaps = 33/421 (7%)

Query: 48  NCCIFRNPVILSCHNQKAFAPNGFSVGPFHHGEDHLKLNEKIKLRYLQGLLRRWPNPKEK 107
           +CCIFR P      N KA+ P   S+GP+H+GE HL++ ++ K R LQ  L        +
Sbjct: 45  SCCIFRVPESFVALNPKAYKPKVVSIGPYHYGEKHLQMIQQHKPRLLQLFLDEAKKKDVE 104

Query: 108 LTELLEEITSVEGLARECYAEPIRFDKEQFVRILVVDGCFIIESFRKHSNEVSKEPDDPI 167
              L++ +  +E   R+ Y+E ++   +  + ++V+DGCFI+  F   S  +    +DPI
Sbjct: 105 ENVLVKAVVDLEDKIRKSYSEELKTGHD-LMFMMVLDGCFILMVFLIMSGNIELS-EDPI 162

Query: 168 FSMACLMELLNHDLVLLENQIPWFVLERLFVLTLNQEVPGNMDLIRLVLQFFQGLFSSDT 227
           FS+  L+  +  DL+LLENQ+P+FVL+ L+V     ++  + DL R+   FF+     + 
Sbjct: 163 FSIPWLLSSIQSDLLLLENQVPFFVLQTLYV---GSKIGVSSDLNRIAFHFFKNPIDKEG 219

Query: 228 IQINSDQYRSHKIKHILDLLRYSLILPIRSE-----------KYTEKNAGWEP------- 269
                +++R++K KH+LDL+R +  LP  SE           +  E  +G  P       
Sbjct: 220 SYW--EKHRNYKAKHLLDLIRETF-LPNTSESDKASSPHVQVQLHEGKSGNVPSVDSKAV 276

Query: 270 --FSCAAKINEAGIEFS-RKRDYSTILDIKFYNGTLDIPPLAIHETTETIFRNLISFEQC 326
                A ++   GI+F  R+    +IL+++     L IP L       + F N ++FEQ 
Sbjct: 277 PLILSAKRLRLQGIKFRLRRSKEDSILNVRLKKNKLQIPQLRFDGFISSFFLNCVAFEQF 336

Query: 327 YPNCDPFITSYAKFMDNLIYTTKDVDLLTEKGIL--NNWLDPDDATLYFNKLYNDT--HV 382
           Y +    IT+Y  FM  L+   +DV  L    ++  N++   ++ + +F  +  D    V
Sbjct: 337 YTDSSNEITTYIVFMGCLLNNEEDVTFLRNDKLIIENHFGSNNEVSEFFKTISKDVVFEV 396

Query: 383 KKFYYDDLCKQVNEYCRSWWNKTRYFYMHNYFGTPWAIVSQIAATFLLLFTFLQTYYTIV 442
              Y +++ K VNEY + W+N     + H +F +PW  +S  A  F++L T LQ+   I+
Sbjct: 397 DTSYLNNVFKGVNEYTKKWYNGLWAGFRHTHFESPWTFLSSCAVLFVILLTMLQSTVAIL 456

Query: 443 G 443
            
Sbjct: 457 S 457





Arabidopsis thaliana (taxid: 3702)
>sp|P0C897|Y3264_ARATH Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana GN=At3g02645 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query455
255536951431 conserved hypothetical protein [Ricinus 0.896 0.946 0.524 1e-117
224055703436 predicted protein [Populus trichocarpa] 0.905 0.944 0.5 1e-107
224055705437 predicted protein [Populus trichocarpa] 0.905 0.942 0.502 1e-103
255562266415 conserved hypothetical protein [Ricinus 0.874 0.959 0.375 6e-72
255562260417 conserved hypothetical protein [Ricinus 0.896 0.978 0.367 7e-71
147799475439 hypothetical protein VITISV_031449 [Viti 0.936 0.970 0.371 7e-70
255562264417 conserved hypothetical protein [Ricinus 0.896 0.978 0.374 2e-69
255554202422 conserved hypothetical protein [Ricinus 0.901 0.971 0.370 5e-67
359482319442 PREDICTED: UPF0481 protein At3g47200-lik 0.850 0.875 0.395 1e-65
297740074441 unnamed protein product [Vitis vinifera] 0.850 0.877 0.395 1e-65
>gi|255536951|ref|XP_002509542.1| conserved hypothetical protein [Ricinus communis] gi|223549441|gb|EEF50929.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/414 (52%), Positives = 288/414 (69%), Gaps = 6/414 (1%)

Query: 30  LVSSLEHMMADDNISISSNCCIFRNPVILSCHNQKAFAPNGFSVGPFHHGEDHLKLNEKI 89
           L +SLE +M+DD + +S  CCIF+ P ILS HN+KA+ PN FS+GP HH   +LK  EKI
Sbjct: 23  LATSLERIMSDD-LYMSPKCCIFKTPKILSRHNEKAYIPNAFSIGPLHHSNQNLKRTEKI 81

Query: 90  KLRYLQGLLRRWPNPKEKLTELLEEITSVEGLARECYAEPIRFDKEQFVRILVVDGCFII 149
           K +YL+GL+ R  NPK+KL E +E I  +E  ARECYA  ++++ ++FV++LVVDGCF+I
Sbjct: 82  KYKYLRGLINRSENPKKKLREFIEAIQRIESEARECYAGLVKYNPDEFVKMLVVDGCFLI 141

Query: 150 ESFRKHSNEVSKEPDDPIFSMACLMELLNHDLVLLENQIPWFVLERLFVLTLNQEVPGNM 209
           E FRK S  V ++ DDP+F+M+C+ + L HDL+LLENQIPW VL+ LF +T  +E  GN 
Sbjct: 142 ELFRKDSKLVPRDEDDPVFTMSCIFQFLYHDLILLENQIPWLVLDCLFEMT--KEENGNS 199

Query: 210 D-LIRLVLQFFQGLFSSDTIQINSDQYRSHKIKHILDLLRYSLILPIRSEKYTEKNAGWE 268
           + L++L ++FF  +FSS    +  D     K KHILDLLR  LI PI   +  E  + W+
Sbjct: 200 EPLVQLAIEFFANMFSSAPSPV-YDPNLLAKSKHILDLLRNWLIAPIYPTQSNEV-SEWQ 257

Query: 269 PFSCAAKINEAGIEFSRKRDYSTILDIKFYNGTLDIPPLAIHETTETIFRNLISFEQCYP 328
           PF  A +I E+GI F +  D  +ILDI+F  G L+IP L I ETTETIFRNLISFEQC  
Sbjct: 258 PFPSATEIKESGILFKKHEDAKSILDIRFDKGILEIPNLLIQETTETIFRNLISFEQCSR 317

Query: 329 NCDPFITSYAKFMDNLIYTTKDVDLLTEKGILNNWLDPDDATLYFNKLYNDTHVKKFYYD 388
              P +T YA  +DNLI T KDV++L    I++NWL+P+DAT +FNKLY D +VK FYY 
Sbjct: 318 EYPPIVTCYAILLDNLINTVKDVNILCSSDIIDNWLNPEDATQFFNKLYLDAYVKIFYYL 377

Query: 389 DLCKQVNEYCRSWWNKTRYFYMHNYFGTPWAIVSQIAATFLLLFTFLQTYYTIV 442
           +LCK+VN Y +  W + R  YMHNYFGTPW I SQI A  +L+ TFLQT ++I+
Sbjct: 378 NLCKEVNAYRKRRWPRWRAAYMHNYFGTPWVIASQIVAAIVLILTFLQTLFSII 431




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055703|ref|XP_002298611.1| predicted protein [Populus trichocarpa] gi|222845869|gb|EEE83416.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224055705|ref|XP_002298612.1| predicted protein [Populus trichocarpa] gi|222845870|gb|EEE83417.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255562266|ref|XP_002522141.1| conserved hypothetical protein [Ricinus communis] gi|223538740|gb|EEF40341.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|255562260|ref|XP_002522138.1| conserved hypothetical protein [Ricinus communis] gi|223538737|gb|EEF40338.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|147799475|emb|CAN68458.1| hypothetical protein VITISV_031449 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255562264|ref|XP_002522140.1| conserved hypothetical protein [Ricinus communis] gi|223538739|gb|EEF40340.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|255554202|ref|XP_002518141.1| conserved hypothetical protein [Ricinus communis] gi|223542737|gb|EEF44274.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|359482319|ref|XP_002283339.2| PREDICTED: UPF0481 protein At3g47200-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297740074|emb|CBI30256.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query455
TAIR|locus:2044918448 AT2G36430 "AT2G36430" [Arabido 0.806 0.819 0.354 2.8e-57
TAIR|locus:2083138503 AT3G50160 "AT3G50160" [Arabido 0.894 0.809 0.343 1.6e-54
TAIR|locus:2074755541 AT3G50170 "AT3G50170" [Arabido 0.523 0.439 0.305 1.8e-53
TAIR|locus:2083078531 AT3G50120 "AT3G50120" [Arabido 0.492 0.421 0.311 5.9e-52
TAIR|locus:2171127440 AT5G22540 "AT5G22540" [Arabido 0.872 0.902 0.307 9.2e-52
TAIR|locus:2116667680 AT4G31980 "AT4G31980" [Arabido 0.894 0.598 0.308 9.5e-50
TAIR|locus:2083093564 AT3G50130 [Arabidopsis thalian 0.443 0.358 0.320 3.4e-48
TAIR|locus:2083108539 AT3G50140 [Arabidopsis thalian 0.525 0.443 0.288 6.8e-48
TAIR|locus:2171132492 AT5G22550 "AT5G22550" [Arabido 0.437 0.404 0.318 3.2e-43
TAIR|locus:2074770493 AT3G50190 [Arabidopsis thalian 0.850 0.784 0.284 4.5e-43
TAIR|locus:2044918 AT2G36430 "AT2G36430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 137/386 (35%), Positives = 210/386 (54%)

Query:    49 CCIFRNPV-ILSCHNQKAFAPNGFSVGPFHHGEDHLKLNEKIKLRYLQGLLRRWPNPXXX 107
             C IFR P  ++ C N + + P   S+GP+H G+  LK+ E+ K RYL  LL R  N    
Sbjct:    45 CSIFRVPQSMIDC-NGRCYEPRVVSIGPYHRGQTQLKMIEEHKWRYLNVLLTRTQN--LT 101

Query:   108 XXXXXXXITSVEGLARECYAEPIRFDKEQFVRILVVDGCFIIESFRKHSNEVSKEPDDPI 167
                    + +VE +ARECY+E I  D E+F  ++V+DGCF++E FRK +N V  EP+DP+
Sbjct:   102 LEDYMKSVKNVEEVARECYSETIHMDSEEFNEMMVLDGCFLLELFRKVNNLVPFEPNDPL 161

Query:   168 FSMACLMELLNHDLVLLENQIPWFVLERLFVLTL-NQEVPGNMDLIRLVLQFFQGLFSSD 226
              +MA ++     D + LENQIP+FVLE LF LT  + E   N  L  L   FF  +    
Sbjct:   162 VAMAWVLPFFYRDFLCLENQIPFFVLETLFNLTRGDNENETNASLQSLAFAFFNNMMHRT 221

Query:   227 TIQINSDQYRSHKIKHILDLLRYSLILPIRSEKYTEK--NAGWE--P---FSCAAKINEA 279
                +   +++  + KH+LDLLR S I P  SE +T    N G E  P       +K+  A
Sbjct:   222 EEDLA--RFKELRAKHLLDLLRSSFI-P-ESELHTPPATNPGKEKMPSHIIHSISKLRRA 277

Query:   280 GIEFSRKRDYSTILDIKFYNGTLDIPPLAIHETTETIFRNLISFEQCYPNCDPFITSYAK 339
             GI+    +D  + L ++F +GT+++P + + +   +   N +++EQC+  C    T+YA 
Sbjct:   278 GIKLRELKDAESFLVVRFRHGTIEMPAITVDDFMSSFLENCVAYEQCHVACSMHFTTYAT 337

Query:   340 FMDNLIYTTKDVDLLTEKGILNNWLDPD-DATLYFNKLYNDT--HVKKFYYDDLCKQVNE 396
              +D L  T KDV+ L ++ I+ N+   D +   + N L  D    + + Y  DL ++VNE
Sbjct:   338 LLDCLTNTYKDVEYLCDQNIIENYFGTDTELAKFVNSLGRDVAFDITQCYLKDLFEEVNE 397

Query:   397 YCRSWWNKTRYFYMHNYFGTPWAIVS 422
             Y +S W+     +   YF +PW+ VS
Sbjct:   398 YYKSSWHVEWATFKFTYFNSPWSFVS 423




GO:0003674 "molecular_function" evidence=ND
GO:0005886 "plasma membrane" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009741 "response to brassinosteroid stimulus" evidence=RCA
TAIR|locus:2083138 AT3G50160 "AT3G50160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2074755 AT3G50170 "AT3G50170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083078 AT3G50120 "AT3G50120" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171127 AT5G22540 "AT5G22540" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116667 AT4G31980 "AT4G31980" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083093 AT3G50130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083108 AT3G50140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171132 AT5G22550 "AT5G22550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2074770 AT3G50190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
eugene3.00012114
hypothetical protein (437 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query455
pfam03140387 pfam03140, DUF247, Plant protein of unknown functi 1e-119
>gnl|CDD|217385 pfam03140, DUF247, Plant protein of unknown function Back     alignment and domain information
 Score =  353 bits (909), Expect = e-119
 Identities = 156/395 (39%), Positives = 214/395 (54%), Gaps = 20/395 (5%)

Query: 51  IFRNPVILSCHNQKAFAPNGFSVGPFHHGEDHLKLNEKIKLRYLQGLLRRWPNPKEKLTE 110
           I+R P  L   N +A+ P   S+GP+HHG+ HL+  E+ K RYL   L R       L +
Sbjct: 1   IYRVPARLRDVNPEAYEPRVVSIGPYHHGKPHLRAMEEHKWRYLNRFLDRT-GRGLSLED 59

Query: 111 LLEEITSVEGLARECYAEPIR-FDKEQFVRILVVDGCFIIESFRKHSNEVSKEPDDPIFS 169
           LL  +  +E  AR CYAE +     E+FV +L++DGCFI+E F + S  +  E +DP+F+
Sbjct: 60  LLAAVRELEEEARACYAEDVDWMSSEEFVEMLLLDGCFILELFLRLSEGIYGE-NDPLFA 118

Query: 170 MACLMELLNHDLVLLENQIPWFVLERLFVLTLNQEVPGNMDLIRLVLQFFQGLFSSDTIQ 229
              L+ L+  DL+LLENQIP+FVLE+LF L L         L  L L+FF    S   + 
Sbjct: 119 RRWLLSLIRRDLLLLENQIPFFVLEKLFEL-LTGRQDVKTSLNDLALRFFYDCES---LL 174

Query: 230 INSDQYRSHKIKHILDLLRYSLILPIRSEKY------TEKNAGWEPFSCAAKINEAGIEF 283
              D      + H+LDLLR SL+     +            A       A ++ EAG+ F
Sbjct: 175 PPDDLIEESNVHHLLDLLRRSLLPSTSPDPTPAAPPRDNGAATPRLIPSATELREAGVRF 234

Query: 284 SRKRDYSTILDIKFYNGTLDIPPLAIHETTETIFRNLISFEQCYPNCDPFITSYAKFMDN 343
            R++  S ILD+ F  G L+IP LA+ + TE++ RNLI+FEQC+      +TSY  FMDN
Sbjct: 235 KRRKTASCILDVSFKRGVLEIPRLAVDDGTESLLRNLIAFEQCHGGSGNHVTSYVAFMDN 294

Query: 344 LIYTTKDVDLLTEKGILNNWLDPDDATL-YFNKL----YNDTHVKKFYYDDLCKQVNEYC 398
           LI T +DV LL  KGIL N L  D+    +FN+L      D  V   Y   + + VN YC
Sbjct: 295 LINTAEDVALLRRKGILENLLGSDEEVAKFFNRLCRGVVFD--VDDSYLSGVFEDVNRYC 352

Query: 399 RSWWNKTRYFYMHNYFGTPWAIVSQIAATFLLLFT 433
           RS WN+ +      YF  PWA +S +AA  LL+ T
Sbjct: 353 RSRWNRWKATLRRKYFSNPWAAISLLAAVVLLVLT 387


The function of the plant proteins constituting this family is unknown. Length = 387

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 455
PF03140391 DUF247: Plant protein of unknown function; InterPr 100.0
>PF03140 DUF247: Plant protein of unknown function; InterPro: IPR004158 The function of the plant proteins constituting this family is unknown Back     alignment and domain information
Probab=100.00  E-value=6.2e-108  Score=846.95  Aligned_cols=378  Identities=41%  Similarity=0.724  Sum_probs=336.6

Q ss_pred             eecCCCccccCCCCCccccEEeecCCcCCchhhchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHhhcCCCC
Q 012835           51 IFRNPVILSCHNQKAFAPNGFSVGPFHHGEDHLKLNEKIKLRYLQGLLRRWPNPKEKLTELLEEITSVEGLARECYAEPI  130 (455)
Q Consensus        51 I~rVP~~lr~~n~~aY~P~~VSIGPyHhg~~~L~~mE~~K~~~l~~~l~r~~~~~~~l~~~~~~i~~~e~~~R~~Y~e~i  130 (455)
                      |||||+++|++|+++|+|++|||||||||+++|+.||++|++|++.|++|....+.++++++++|+++|++||+||++++
T Consensus         1 I~rVP~~lr~~~~~~Y~P~~VsIGPyH~g~~~L~~mE~~K~~~l~~~l~~~~~~~~~l~~~~~~i~~~e~~~R~~Y~~~~   80 (391)
T PF03140_consen    1 IYRVPESLRDVNPKAYTPQVVSIGPYHHGKPDLQEMEEHKLRYLHRFLKRSGAPAESLEDYVEAIRSLEEEARACYAEDI   80 (391)
T ss_pred             CcCCCHHHccCCchhcCCceEEeCCCCCCchhhhhhHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHhcccc
Confidence            89999999999999999999999999999999999999999999999999433348999999999999999999999999


Q ss_pred             C-CChHHHHHHHhHhhhHHHHHHhhcccCCCCCCCCC-ccchhhhHHHHHHHHhhhccCchHHHHHHHHHhhhcCCCCCc
Q 012835          131 R-FDKEQFVRILVVDGCFIIESFRKHSNEVSKEPDDP-IFSMACLMELLNHDLVLLENQIPWFVLERLFVLTLNQEVPGN  208 (455)
Q Consensus       131 ~-~~~~ef~~MlllDgCFILe~~~~~~~~~~~~~~d~-~~~~~~~~~~v~~DllLLENQIPffVLe~L~~~~~~~~~~~~  208 (455)
                      + +++++|++||++|||||||+|+++..  ....+|| +++.+|....|++||+|||||||||||++||++.........
T Consensus        81 ~~~~~~~f~~MmllDgCFlLe~~~~~~~--~~~~~d~~~~~~~~~~~~i~~Dl~LLENQIPffVL~~L~~l~~~~~~~~~  158 (391)
T PF03140_consen   81 DDMSSDEFVEMMLLDGCFLLEFFLRYSR--SDGENDPGIFSRPWLLSAIRRDLLLLENQIPFFVLEKLFELLFGSKSDVD  158 (391)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHhhhh--ccccccccccccccccccchhheeeecccchHHHHHHHHHHhcccccCcc
Confidence            7 99999999999999999999998876  2345778 888999999999999999999999999999999984444456


Q ss_pred             chHHHHHHHHhccccCCCCcccCccccccCcCCChHHHHHHhhcCCCCcc---cccCC-----CCCccccccHHHHHHcC
Q 012835          209 MDLIRLVLQFFQGLFSSDTIQINSDQYRSHKIKHILDLLRYSLILPIRSE---KYTEK-----NAGWEPFSCAAKINEAG  280 (455)
Q Consensus       209 ~~l~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~HLLdL~~~~~~p~~~~~---~~~~~-----~~~~~~~~sAteL~~aG  280 (455)
                      ..+.+++.+||....+......   .....+++|||||+|.+++|+....   ...+.     ...+..||||+||++||
T Consensus       159 ~~l~~l~~~~~~~~~~~~~~~~---~~~~~~~~HlL~L~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~sA~eL~~aG  235 (391)
T PF03140_consen  159 ESLIDLVLKFFYKHWPSWPPDE---PISNPEPHHLLDLLRMSLLPSPPSSSPTPPRPPRSNGEKPPPKRIRSATELREAG  235 (391)
T ss_pred             chHHHHHHhHhccccccccccc---cccCCCCCChHHHHHHHhccccCCcccCCCCcccccccccccccCCCHHHHHhCC
Confidence            7899999999943322211111   1223479999999999999932211   00111     12457899999999999


Q ss_pred             cEEeecCCCCCeeeEEecCceeecCceeeccchhHHHHhHHHHHhhCCCCCCchhhHHHHHHhhcCChhhHHHHhhCCcc
Q 012835          281 IEFSRKRDYSTILDIKFYNGTLDIPPLAIHETTETIFRNLISFEQCYPNCDPFITSYAKFMDNLIYTTKDVDLLTEKGIL  360 (455)
Q Consensus       281 VkFk~~~~~~~llDV~F~~G~L~IP~l~idd~T~~llrNLiA~Eq~~~~~~~~vTsYv~fM~~LI~t~eDV~lL~~kGIi  360 (455)
                      |+||+++.+++++||+|++|+|+||+|.||++|+++||||||||||+...+.+|||||.||++||+|++||++|++||||
T Consensus       236 V~fk~~~~~~~~lDv~F~~G~L~IP~L~id~~T~~~lrNLiA~Eq~~~~~~~~vtsY~~fm~~Li~t~~DV~lL~~kgIi  315 (391)
T PF03140_consen  236 VKFKPSETDRSLLDVKFKKGVLEIPPLYIDDNTESLLRNLIAFEQCHPPTGSYVTSYVFFMDSLINTPEDVELLRRKGII  315 (391)
T ss_pred             cEEeeccCccccccceecCCEEEeCeEEECCcchHHHhHHHHHHHHhccCCchHhHHHHHHHHHhCcHhhHHHHHhCCeE
Confidence            99999984557999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCChhH-HHHHHhhccCCccC--CcchHHHHHHHHHHhhchhhhhhhhhccccccchhHHHHHHHHHHHHHHH
Q 012835          361 NNWLDPDDA-TLYFNKLYNDTHVK--KFYYDDLCKQVNEYCRSWWNKTRYFYMHNYFGTPWAIVSQIAATFLLLFT  433 (455)
Q Consensus       361 ~n~lgsdee-a~lFn~L~~~v~~~--~~y~~~v~~~ln~~~~~r~~~w~a~l~~~yf~npW~~is~~aA~~ll~lt  433 (455)
                      +|++|+|+| |+|||+||++++++  ++||.+++++||+||++||++|+|+|+|+||+|||+++|++||+++|++|
T Consensus       316 ~~~l~~d~eva~~F~~L~~~v~~~~~~~~~~~v~~~l~~~~~~~~~~~~a~l~~~yf~~pw~~is~~aa~~ll~lT  391 (391)
T PF03140_consen  316 VNWLGSDEEVAKLFNGLCKGVVFDVDDSYYSDVCEDLNKYYQSRWNRWWAWLRRKYFSNPWTFISLVAAIILLLLT  391 (391)
T ss_pred             ecCCCCcHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHhC
Confidence            999999999 99999999999988  78999999999999999999999999999999999999999999999997




Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query455
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 59.5 bits (143), Expect = 2e-09
 Identities = 82/534 (15%), Positives = 153/534 (28%), Gaps = 176/534 (32%)

Query: 57  ILSCHNQKAFAPNGFSVGPFHHGEDHLKL--------------NEKIKLRYLQGLLRRWP 102
           ILS   + AF  N F        +D  K               +       L   L    
Sbjct: 21  ILS-VFEDAFVDN-FD---CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS-- 73

Query: 103 NPKEKLTELLEEITS------VEGLAREC-----------------YAEPIRFDKEQFVR 139
             +E + + +EE+        +  +  E                  Y +   F K    R
Sbjct: 74  KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133

Query: 140 ILVVDGCFIIESFRKHSNEVSKEPDDPIFSMA-----CL--MELLNHDLVL-LENQIPWF 191
           +            R+   E+    +  I  +       +     L++ +   ++ +I W 
Sbjct: 134 LQPY------LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW- 186

Query: 192 VLERLFVLTLNQEVPGNMDLIRLVLQFFQGLFSSDTIQINSDQYRSHKIKHILDLLRYSL 251
                  L L      N +    VL+  Q L         S    S  IK  +  ++  L
Sbjct: 187 -------LNL-----KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 252 ILPIRSEKYTE--------KNAG-WEPFSCAAKI----NEAGIEFSRKRDYSTILDIKFY 298
              ++S+ Y          +NA  W  F+ + KI        +        +T + +  +
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 299 NGTL------------------DIP-------PLAIHETTETIFRNLISFEQ-CYPNCDP 332
           + TL                  D+P       P  +    E+I   L +++   + NCD 
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 333 FITSYAKFMDNL-------IYTT-----KDVDLLTEK--GILNNW--LDPDDATLYFNKL 376
             T     ++ L       ++            +      ++  W  +   D  +  NKL
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-IPTILLSLI--WFDVIKSDVMVVVNKL 411

Query: 377 YN----DTHVKKFY------YDDLCKQ-----------VNEY----CRSWWNKT-----R 406
           +     +   K+        Y +L  +           V+ Y         +       +
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471

Query: 407 YFYMHNYFG--TPWAIVSQIAATF--LLL-FTFLQTYYTIVGGVQKPIRGSTYS 455
           YFY  ++ G         +    F  + L F FL+         QK IR  + +
Sbjct: 472 YFY--SHIGHHLKNIEHPERMTLFRMVFLDFRFLE---------QK-IRHDSTA 513


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00