Citrus Sinensis ID: 012835
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 455 | ||||||
| 255536951 | 431 | conserved hypothetical protein [Ricinus | 0.896 | 0.946 | 0.524 | 1e-117 | |
| 224055703 | 436 | predicted protein [Populus trichocarpa] | 0.905 | 0.944 | 0.5 | 1e-107 | |
| 224055705 | 437 | predicted protein [Populus trichocarpa] | 0.905 | 0.942 | 0.502 | 1e-103 | |
| 255562266 | 415 | conserved hypothetical protein [Ricinus | 0.874 | 0.959 | 0.375 | 6e-72 | |
| 255562260 | 417 | conserved hypothetical protein [Ricinus | 0.896 | 0.978 | 0.367 | 7e-71 | |
| 147799475 | 439 | hypothetical protein VITISV_031449 [Viti | 0.936 | 0.970 | 0.371 | 7e-70 | |
| 255562264 | 417 | conserved hypothetical protein [Ricinus | 0.896 | 0.978 | 0.374 | 2e-69 | |
| 255554202 | 422 | conserved hypothetical protein [Ricinus | 0.901 | 0.971 | 0.370 | 5e-67 | |
| 359482319 | 442 | PREDICTED: UPF0481 protein At3g47200-lik | 0.850 | 0.875 | 0.395 | 1e-65 | |
| 297740074 | 441 | unnamed protein product [Vitis vinifera] | 0.850 | 0.877 | 0.395 | 1e-65 |
| >gi|255536951|ref|XP_002509542.1| conserved hypothetical protein [Ricinus communis] gi|223549441|gb|EEF50929.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/414 (52%), Positives = 288/414 (69%), Gaps = 6/414 (1%)
Query: 30 LVSSLEHMMADDNISISSNCCIFRNPVILSCHNQKAFAPNGFSVGPFHHGEDHLKLNEKI 89
L +SLE +M+DD + +S CCIF+ P ILS HN+KA+ PN FS+GP HH +LK EKI
Sbjct: 23 LATSLERIMSDD-LYMSPKCCIFKTPKILSRHNEKAYIPNAFSIGPLHHSNQNLKRTEKI 81
Query: 90 KLRYLQGLLRRWPNPKEKLTELLEEITSVEGLARECYAEPIRFDKEQFVRILVVDGCFII 149
K +YL+GL+ R NPK+KL E +E I +E ARECYA ++++ ++FV++LVVDGCF+I
Sbjct: 82 KYKYLRGLINRSENPKKKLREFIEAIQRIESEARECYAGLVKYNPDEFVKMLVVDGCFLI 141
Query: 150 ESFRKHSNEVSKEPDDPIFSMACLMELLNHDLVLLENQIPWFVLERLFVLTLNQEVPGNM 209
E FRK S V ++ DDP+F+M+C+ + L HDL+LLENQIPW VL+ LF +T +E GN
Sbjct: 142 ELFRKDSKLVPRDEDDPVFTMSCIFQFLYHDLILLENQIPWLVLDCLFEMT--KEENGNS 199
Query: 210 D-LIRLVLQFFQGLFSSDTIQINSDQYRSHKIKHILDLLRYSLILPIRSEKYTEKNAGWE 268
+ L++L ++FF +FSS + D K KHILDLLR LI PI + E + W+
Sbjct: 200 EPLVQLAIEFFANMFSSAPSPV-YDPNLLAKSKHILDLLRNWLIAPIYPTQSNEV-SEWQ 257
Query: 269 PFSCAAKINEAGIEFSRKRDYSTILDIKFYNGTLDIPPLAIHETTETIFRNLISFEQCYP 328
PF A +I E+GI F + D +ILDI+F G L+IP L I ETTETIFRNLISFEQC
Sbjct: 258 PFPSATEIKESGILFKKHEDAKSILDIRFDKGILEIPNLLIQETTETIFRNLISFEQCSR 317
Query: 329 NCDPFITSYAKFMDNLIYTTKDVDLLTEKGILNNWLDPDDATLYFNKLYNDTHVKKFYYD 388
P +T YA +DNLI T KDV++L I++NWL+P+DAT +FNKLY D +VK FYY
Sbjct: 318 EYPPIVTCYAILLDNLINTVKDVNILCSSDIIDNWLNPEDATQFFNKLYLDAYVKIFYYL 377
Query: 389 DLCKQVNEYCRSWWNKTRYFYMHNYFGTPWAIVSQIAATFLLLFTFLQTYYTIV 442
+LCK+VN Y + W + R YMHNYFGTPW I SQI A +L+ TFLQT ++I+
Sbjct: 378 NLCKEVNAYRKRRWPRWRAAYMHNYFGTPWVIASQIVAAIVLILTFLQTLFSII 431
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224055703|ref|XP_002298611.1| predicted protein [Populus trichocarpa] gi|222845869|gb|EEE83416.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224055705|ref|XP_002298612.1| predicted protein [Populus trichocarpa] gi|222845870|gb|EEE83417.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|255562266|ref|XP_002522141.1| conserved hypothetical protein [Ricinus communis] gi|223538740|gb|EEF40341.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|255562260|ref|XP_002522138.1| conserved hypothetical protein [Ricinus communis] gi|223538737|gb|EEF40338.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|147799475|emb|CAN68458.1| hypothetical protein VITISV_031449 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|255562264|ref|XP_002522140.1| conserved hypothetical protein [Ricinus communis] gi|223538739|gb|EEF40340.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|255554202|ref|XP_002518141.1| conserved hypothetical protein [Ricinus communis] gi|223542737|gb|EEF44274.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|359482319|ref|XP_002283339.2| PREDICTED: UPF0481 protein At3g47200-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|297740074|emb|CBI30256.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 455 | ||||||
| TAIR|locus:2044918 | 448 | AT2G36430 "AT2G36430" [Arabido | 0.806 | 0.819 | 0.354 | 2.8e-57 | |
| TAIR|locus:2083138 | 503 | AT3G50160 "AT3G50160" [Arabido | 0.894 | 0.809 | 0.343 | 1.6e-54 | |
| TAIR|locus:2074755 | 541 | AT3G50170 "AT3G50170" [Arabido | 0.523 | 0.439 | 0.305 | 1.8e-53 | |
| TAIR|locus:2083078 | 531 | AT3G50120 "AT3G50120" [Arabido | 0.492 | 0.421 | 0.311 | 5.9e-52 | |
| TAIR|locus:2171127 | 440 | AT5G22540 "AT5G22540" [Arabido | 0.872 | 0.902 | 0.307 | 9.2e-52 | |
| TAIR|locus:2116667 | 680 | AT4G31980 "AT4G31980" [Arabido | 0.894 | 0.598 | 0.308 | 9.5e-50 | |
| TAIR|locus:2083093 | 564 | AT3G50130 [Arabidopsis thalian | 0.443 | 0.358 | 0.320 | 3.4e-48 | |
| TAIR|locus:2083108 | 539 | AT3G50140 [Arabidopsis thalian | 0.525 | 0.443 | 0.288 | 6.8e-48 | |
| TAIR|locus:2171132 | 492 | AT5G22550 "AT5G22550" [Arabido | 0.437 | 0.404 | 0.318 | 3.2e-43 | |
| TAIR|locus:2074770 | 493 | AT3G50190 [Arabidopsis thalian | 0.850 | 0.784 | 0.284 | 4.5e-43 |
| TAIR|locus:2044918 AT2G36430 "AT2G36430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 137/386 (35%), Positives = 210/386 (54%)
Query: 49 CCIFRNPV-ILSCHNQKAFAPNGFSVGPFHHGEDHLKLNEKIKLRYLQGLLRRWPNPXXX 107
C IFR P ++ C N + + P S+GP+H G+ LK+ E+ K RYL LL R N
Sbjct: 45 CSIFRVPQSMIDC-NGRCYEPRVVSIGPYHRGQTQLKMIEEHKWRYLNVLLTRTQN--LT 101
Query: 108 XXXXXXXITSVEGLARECYAEPIRFDKEQFVRILVVDGCFIIESFRKHSNEVSKEPDDPI 167
+ +VE +ARECY+E I D E+F ++V+DGCF++E FRK +N V EP+DP+
Sbjct: 102 LEDYMKSVKNVEEVARECYSETIHMDSEEFNEMMVLDGCFLLELFRKVNNLVPFEPNDPL 161
Query: 168 FSMACLMELLNHDLVLLENQIPWFVLERLFVLTL-NQEVPGNMDLIRLVLQFFQGLFSSD 226
+MA ++ D + LENQIP+FVLE LF LT + E N L L FF +
Sbjct: 162 VAMAWVLPFFYRDFLCLENQIPFFVLETLFNLTRGDNENETNASLQSLAFAFFNNMMHRT 221
Query: 227 TIQINSDQYRSHKIKHILDLLRYSLILPIRSEKYTEK--NAGWE--P---FSCAAKINEA 279
+ +++ + KH+LDLLR S I P SE +T N G E P +K+ A
Sbjct: 222 EEDLA--RFKELRAKHLLDLLRSSFI-P-ESELHTPPATNPGKEKMPSHIIHSISKLRRA 277
Query: 280 GIEFSRKRDYSTILDIKFYNGTLDIPPLAIHETTETIFRNLISFEQCYPNCDPFITSYAK 339
GI+ +D + L ++F +GT+++P + + + + N +++EQC+ C T+YA
Sbjct: 278 GIKLRELKDAESFLVVRFRHGTIEMPAITVDDFMSSFLENCVAYEQCHVACSMHFTTYAT 337
Query: 340 FMDNLIYTTKDVDLLTEKGILNNWLDPD-DATLYFNKLYNDT--HVKKFYYDDLCKQVNE 396
+D L T KDV+ L ++ I+ N+ D + + N L D + + Y DL ++VNE
Sbjct: 338 LLDCLTNTYKDVEYLCDQNIIENYFGTDTELAKFVNSLGRDVAFDITQCYLKDLFEEVNE 397
Query: 397 YCRSWWNKTRYFYMHNYFGTPWAIVS 422
Y +S W+ + YF +PW+ VS
Sbjct: 398 YYKSSWHVEWATFKFTYFNSPWSFVS 423
|
|
| TAIR|locus:2083138 AT3G50160 "AT3G50160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2074755 AT3G50170 "AT3G50170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2083078 AT3G50120 "AT3G50120" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2171127 AT5G22540 "AT5G22540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2116667 AT4G31980 "AT4G31980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2083093 AT3G50130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2083108 AT3G50140 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2171132 AT5G22550 "AT5G22550" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2074770 AT3G50190 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| eugene3.00012114 | hypothetical protein (437 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 455 | |||
| pfam03140 | 387 | pfam03140, DUF247, Plant protein of unknown functi | 1e-119 |
| >gnl|CDD|217385 pfam03140, DUF247, Plant protein of unknown function | Back alignment and domain information |
|---|
Score = 353 bits (909), Expect = e-119
Identities = 156/395 (39%), Positives = 214/395 (54%), Gaps = 20/395 (5%)
Query: 51 IFRNPVILSCHNQKAFAPNGFSVGPFHHGEDHLKLNEKIKLRYLQGLLRRWPNPKEKLTE 110
I+R P L N +A+ P S+GP+HHG+ HL+ E+ K RYL L R L +
Sbjct: 1 IYRVPARLRDVNPEAYEPRVVSIGPYHHGKPHLRAMEEHKWRYLNRFLDRT-GRGLSLED 59
Query: 111 LLEEITSVEGLARECYAEPIR-FDKEQFVRILVVDGCFIIESFRKHSNEVSKEPDDPIFS 169
LL + +E AR CYAE + E+FV +L++DGCFI+E F + S + E +DP+F+
Sbjct: 60 LLAAVRELEEEARACYAEDVDWMSSEEFVEMLLLDGCFILELFLRLSEGIYGE-NDPLFA 118
Query: 170 MACLMELLNHDLVLLENQIPWFVLERLFVLTLNQEVPGNMDLIRLVLQFFQGLFSSDTIQ 229
L+ L+ DL+LLENQIP+FVLE+LF L L L L L+FF S +
Sbjct: 119 RRWLLSLIRRDLLLLENQIPFFVLEKLFEL-LTGRQDVKTSLNDLALRFFYDCES---LL 174
Query: 230 INSDQYRSHKIKHILDLLRYSLILPIRSEKY------TEKNAGWEPFSCAAKINEAGIEF 283
D + H+LDLLR SL+ + A A ++ EAG+ F
Sbjct: 175 PPDDLIEESNVHHLLDLLRRSLLPSTSPDPTPAAPPRDNGAATPRLIPSATELREAGVRF 234
Query: 284 SRKRDYSTILDIKFYNGTLDIPPLAIHETTETIFRNLISFEQCYPNCDPFITSYAKFMDN 343
R++ S ILD+ F G L+IP LA+ + TE++ RNLI+FEQC+ +TSY FMDN
Sbjct: 235 KRRKTASCILDVSFKRGVLEIPRLAVDDGTESLLRNLIAFEQCHGGSGNHVTSYVAFMDN 294
Query: 344 LIYTTKDVDLLTEKGILNNWLDPDDATL-YFNKL----YNDTHVKKFYYDDLCKQVNEYC 398
LI T +DV LL KGIL N L D+ +FN+L D V Y + + VN YC
Sbjct: 295 LINTAEDVALLRRKGILENLLGSDEEVAKFFNRLCRGVVFD--VDDSYLSGVFEDVNRYC 352
Query: 399 RSWWNKTRYFYMHNYFGTPWAIVSQIAATFLLLFT 433
RS WN+ + YF PWA +S +AA LL+ T
Sbjct: 353 RSRWNRWKATLRRKYFSNPWAAISLLAAVVLLVLT 387
|
The function of the plant proteins constituting this family is unknown. Length = 387 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 455 | |||
| PF03140 | 391 | DUF247: Plant protein of unknown function; InterPr | 100.0 |
| >PF03140 DUF247: Plant protein of unknown function; InterPro: IPR004158 The function of the plant proteins constituting this family is unknown | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-108 Score=846.95 Aligned_cols=378 Identities=41% Similarity=0.724 Sum_probs=336.6
Q ss_pred eecCCCccccCCCCCccccEEeecCCcCCchhhchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHhhcCCCC
Q 012835 51 IFRNPVILSCHNQKAFAPNGFSVGPFHHGEDHLKLNEKIKLRYLQGLLRRWPNPKEKLTELLEEITSVEGLARECYAEPI 130 (455)
Q Consensus 51 I~rVP~~lr~~n~~aY~P~~VSIGPyHhg~~~L~~mE~~K~~~l~~~l~r~~~~~~~l~~~~~~i~~~e~~~R~~Y~e~i 130 (455)
|||||+++|++|+++|+|++|||||||||+++|+.||++|++|++.|++|....+.++++++++|+++|++||+||++++
T Consensus 1 I~rVP~~lr~~~~~~Y~P~~VsIGPyH~g~~~L~~mE~~K~~~l~~~l~~~~~~~~~l~~~~~~i~~~e~~~R~~Y~~~~ 80 (391)
T PF03140_consen 1 IYRVPESLRDVNPKAYTPQVVSIGPYHHGKPDLQEMEEHKLRYLHRFLKRSGAPAESLEDYVEAIRSLEEEARACYAEDI 80 (391)
T ss_pred CcCCCHHHccCCchhcCCceEEeCCCCCCchhhhhhHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999999999999999999999999999999999999999999999433348999999999999999999999999
Q ss_pred C-CChHHHHHHHhHhhhHHHHHHhhcccCCCCCCCCC-ccchhhhHHHHHHHHhhhccCchHHHHHHHHHhhhcCCCCCc
Q 012835 131 R-FDKEQFVRILVVDGCFIIESFRKHSNEVSKEPDDP-IFSMACLMELLNHDLVLLENQIPWFVLERLFVLTLNQEVPGN 208 (455)
Q Consensus 131 ~-~~~~ef~~MlllDgCFILe~~~~~~~~~~~~~~d~-~~~~~~~~~~v~~DllLLENQIPffVLe~L~~~~~~~~~~~~ 208 (455)
+ +++++|++||++|||||||+|+++.. ....+|| +++.+|....|++||+|||||||||||++||++.........
T Consensus 81 ~~~~~~~f~~MmllDgCFlLe~~~~~~~--~~~~~d~~~~~~~~~~~~i~~Dl~LLENQIPffVL~~L~~l~~~~~~~~~ 158 (391)
T PF03140_consen 81 DDMSSDEFVEMMLLDGCFLLEFFLRYSR--SDGENDPGIFSRPWLLSAIRRDLLLLENQIPFFVLEKLFELLFGSKSDVD 158 (391)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhh--ccccccccccccccccccchhheeeecccchHHHHHHHHHHhcccccCcc
Confidence 7 99999999999999999999998876 2345778 888999999999999999999999999999999984444456
Q ss_pred chHHHHHHHHhccccCCCCcccCccccccCcCCChHHHHHHhhcCCCCcc---cccCC-----CCCccccccHHHHHHcC
Q 012835 209 MDLIRLVLQFFQGLFSSDTIQINSDQYRSHKIKHILDLLRYSLILPIRSE---KYTEK-----NAGWEPFSCAAKINEAG 280 (455)
Q Consensus 209 ~~l~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~HLLdL~~~~~~p~~~~~---~~~~~-----~~~~~~~~sAteL~~aG 280 (455)
..+.+++.+||....+...... .....+++|||||+|.+++|+.... ...+. ...+..||||+||++||
T Consensus 159 ~~l~~l~~~~~~~~~~~~~~~~---~~~~~~~~HlL~L~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~sA~eL~~aG 235 (391)
T PF03140_consen 159 ESLIDLVLKFFYKHWPSWPPDE---PISNPEPHHLLDLLRMSLLPSPPSSSPTPPRPPRSNGEKPPPKRIRSATELREAG 235 (391)
T ss_pred chHHHHHHhHhccccccccccc---cccCCCCCChHHHHHHHhccccCCcccCCCCcccccccccccccCCCHHHHHhCC
Confidence 7899999999943322211111 1223479999999999999932211 00111 12457899999999999
Q ss_pred cEEeecCCCCCeeeEEecCceeecCceeeccchhHHHHhHHHHHhhCCCCCCchhhHHHHHHhhcCChhhHHHHhhCCcc
Q 012835 281 IEFSRKRDYSTILDIKFYNGTLDIPPLAIHETTETIFRNLISFEQCYPNCDPFITSYAKFMDNLIYTTKDVDLLTEKGIL 360 (455)
Q Consensus 281 VkFk~~~~~~~llDV~F~~G~L~IP~l~idd~T~~llrNLiA~Eq~~~~~~~~vTsYv~fM~~LI~t~eDV~lL~~kGIi 360 (455)
|+||+++.+++++||+|++|+|+||+|.||++|+++||||||||||+...+.+|||||.||++||+|++||++|++||||
T Consensus 236 V~fk~~~~~~~~lDv~F~~G~L~IP~L~id~~T~~~lrNLiA~Eq~~~~~~~~vtsY~~fm~~Li~t~~DV~lL~~kgIi 315 (391)
T PF03140_consen 236 VKFKPSETDRSLLDVKFKKGVLEIPPLYIDDNTESLLRNLIAFEQCHPPTGSYVTSYVFFMDSLINTPEDVELLRRKGII 315 (391)
T ss_pred cEEeeccCccccccceecCCEEEeCeEEECCcchHHHhHHHHHHHHhccCCchHhHHHHHHHHHhCcHhhHHHHHhCCeE
Confidence 99999984557999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCChhH-HHHHHhhccCCccC--CcchHHHHHHHHHHhhchhhhhhhhhccccccchhHHHHHHHHHHHHHHH
Q 012835 361 NNWLDPDDA-TLYFNKLYNDTHVK--KFYYDDLCKQVNEYCRSWWNKTRYFYMHNYFGTPWAIVSQIAATFLLLFT 433 (455)
Q Consensus 361 ~n~lgsdee-a~lFn~L~~~v~~~--~~y~~~v~~~ln~~~~~r~~~w~a~l~~~yf~npW~~is~~aA~~ll~lt 433 (455)
+|++|+|+| |+|||+||++++++ ++||.+++++||+||++||++|+|+|+|+||+|||+++|++||+++|++|
T Consensus 316 ~~~l~~d~eva~~F~~L~~~v~~~~~~~~~~~v~~~l~~~~~~~~~~~~a~l~~~yf~~pw~~is~~aa~~ll~lT 391 (391)
T PF03140_consen 316 VNWLGSDEEVAKLFNGLCKGVVFDVDDSYYSDVCEDLNKYYQSRWNRWWAWLRRKYFSNPWTFISLVAAIILLLLT 391 (391)
T ss_pred ecCCCCcHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHhC
Confidence 999999999 99999999999988 78999999999999999999999999999999999999999999999997
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 455 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-07 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 2e-09
Identities = 82/534 (15%), Positives = 153/534 (28%), Gaps = 176/534 (32%)
Query: 57 ILSCHNQKAFAPNGFSVGPFHHGEDHLKL--------------NEKIKLRYLQGLLRRWP 102
ILS + AF N F +D K + L L
Sbjct: 21 ILS-VFEDAFVDN-FD---CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS-- 73
Query: 103 NPKEKLTELLEEITS------VEGLAREC-----------------YAEPIRFDKEQFVR 139
+E + + +EE+ + + E Y + F K R
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 140 ILVVDGCFIIESFRKHSNEVSKEPDDPIFSMA-----CL--MELLNHDLVL-LENQIPWF 191
+ R+ E+ + I + + L++ + ++ +I W
Sbjct: 134 LQPY------LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW- 186
Query: 192 VLERLFVLTLNQEVPGNMDLIRLVLQFFQGLFSSDTIQINSDQYRSHKIKHILDLLRYSL 251
L L N + VL+ Q L S S IK + ++ L
Sbjct: 187 -------LNL-----KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 252 ILPIRSEKYTE--------KNAG-WEPFSCAAKI----NEAGIEFSRKRDYSTILDIKFY 298
++S+ Y +NA W F+ + KI + +T + + +
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 299 NGTL------------------DIP-------PLAIHETTETIFRNLISFEQ-CYPNCDP 332
+ TL D+P P + E+I L +++ + NCD
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 333 FITSYAKFMDNL-------IYTT-----KDVDLLTEK--GILNNW--LDPDDATLYFNKL 376
T ++ L ++ + ++ W + D + NKL
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-IPTILLSLI--WFDVIKSDVMVVVNKL 411
Query: 377 YN----DTHVKKFY------YDDLCKQ-----------VNEY----CRSWWNKT-----R 406
+ + K+ Y +L + V+ Y + +
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 407 YFYMHNYFG--TPWAIVSQIAATF--LLL-FTFLQTYYTIVGGVQKPIRGSTYS 455
YFY ++ G + F + L F FL+ QK IR + +
Sbjct: 472 YFY--SHIGHHLKNIEHPERMTLFRMVFLDFRFLE---------QK-IRHDSTA 513
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00