Citrus Sinensis ID: 012855

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-----
MACNSATGCQSGCYKNEFERDLKPATETISDSNEQNLCVKCKANEPTPGAGEDGKHCLDCFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQTHSGINGLVSSFVKILQEENPSRESTIMRTAGKLTPFHFNKIPELNDSSVPLASQRRQKRFNLKPNESISSESFCSLCYSPLNQSDLTSLSSHDNCKNSDIFVAACCSSCRFQIFPKDPSSMEKFYSLLPEPLVARAKHVRNGDSSLLREQIQDFLLSDSEDDA
cccccccccccccccccccccccccccccccccccccccccccccccEEccccccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEccccccccccHHHHHHHHHHHHHHHHcccccccEEEEccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHcccccccccccccccccccccEEEccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHcccccccccccc
ccccccccccccccccccccccccccccccccccccccEcccccccEEEEEcccHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccHcHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHccccccEEEEEEHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHccccccccHHccccccccccEEEccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccEEEEEEcHHHcccccccccccccccccccccccccEEEcccccccccHHHHHHHcccccccccHccccccccccccccccccEEccEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccc
macnsatgcqsgcykneferdlkpatetisdsneqnlcvkckaneptpgagedgkhcldcfrsnlfgkfrLAVASnalitpadnvlvafsggpssRVALQFVHELQQRAQKNfdaskdrslpvfgvgvvfvdetayypvpsseidNAIQEIKLIVsnlspptkelhvipiesifcsnpcdgreRFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITAtvkgrgyslpadiqyadarweipvvLPLRDCLAQELNMLCQLDCLKTVELLNQTHSGINGLVSSFVKILqeenpsrestimrtagkltpfhfnkipelndssvplasqrrqkrfnlkpnesissesfcslcysplnqsdltslsshdncknsdIFVAACCsscrfqifpkdpssmekfysllpeplVARAKHVRNGDSSLLREQIQDFLlsdsedda
macnsatgcqsgcykNEFERDLKPAtetisdsneqnLCVKCKANEPTPGAGEDGKHCLDCFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKnfdaskdrslpvFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITatvkgrgysLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQTHSGINGLVSSFVKILQEENPSRESTIMRTAGKLTPFHFNKIPELNDSSVPLASQRRQKRFnlkpnesisseSFCSLCYSPLNQSDLTSLSSHDNCKNSDIFVAACCSSCRFQIFPKDPSSMEKFYSLLPEPLVARAKHVRNGDSSLLREQIQdfllsdsedda
MACNSATGCQSGCYKNEFERDLKPATETISDSNEQNLCVKCKANEPTPGAGEDGKHCLDCFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDlllqlrmlslQKFASENGYNRLLLGLCTSRIACHVITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQTHSGINGLVSSFVKILQEENPSRESTIMRTAGKLTPFHFNKIPELNDSSVPLASQRRQKRFNLKPNESISSESFCSLCYSPLNQSDLTSLSSHDNCKNSDIFVAACCSSCRFQIFPKDPSSMEKFYSLLPEPLVARAKHVRNGDSSLLREQIQDFLLSDSEDDA
*************************************CV**************GKHCLDCFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQ************RSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQTHSGINGLVSSFVKIL********************FHF**********************************FCSLCYSPL***********DNCKNSDIFVAACCSSCRFQIFPKD****EKFYSLLPEPLVA*****************************
****************************************CKANEPTPGAGEDGKHCLDCFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPV**SEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKGRGYSLPAD****DARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQTHSGINGLVSSFVKILQEENPSRESTIMRTAGKLTPFHFNKIPELNDSSVPLASQRRQKRFNLKPNESISS*********************************ACCSSCRFQIFPKD*SSMEKFYSLLPEPLVAR*********************SD*****
*********QSGCYKNEFERDLKPATETISDSNEQNLCVKCKANEPTPGAGEDGKHCLDCFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQTHSGINGLVSSFVKILQEENPSRESTIMRTAGKLTPFHFNKIPELNDSSVPLASQRRQKRFNLKPNESISSESFCSLCYSPLNQSDLTSLSSHDNCKNSDIFVAACCSSCRFQIFPKDPSSMEKFYSLLPEPLVARAKHVRNGDSSLLREQIQDFLLSDSEDDA
***********************************NLCVKCKANEPTPGAGEDGKHCLDCFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQTHSGINGLVSSFVKILQEENPSRESTIMRTAGKLTPFHFN**PELNDSSVPLASQRRQKRFNLKPNESISSESFCSLCYSPLNQSD*TSLSSHDNCKNSDIFVAACCSSCRFQIFPKDPSSMEKFYSLLPEPLVARAKHVRNGDSSLLREQIQDFLLSD*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MACNSATGCQSGCYKNEFERDLKPATETISDSNEQNLCVKCKANEPTPGAGEDGKHCLDCFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQTHSGINGLVSSFVKILQEENPSRESTIMRTAGKLTPFHFNKIPELNDSSVPLASQRRQKRFNLKPNESISSESFCSLCYSPLNQSDLTSLSSHDNCKNSDIFVAACCSSCRFQIFPKDPSSMEKFYSLLPEPLVARAKHVRNGDSSLLREQIQDFLLSDSEDDA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query455 2.2.26 [Sep-21-2011]
O65628458 Cytoplasmic tRNA 2-thiola yes no 0.993 0.986 0.614 1e-157
A2ZM73464 Cytoplasmic tRNA 2-thiola N/A no 0.909 0.892 0.507 1e-116
Q2QMW0464 Cytoplasmic tRNA 2-thiola yes no 0.909 0.892 0.507 1e-115
Q3SZG9501 Cytoplasmic tRNA 2-thiola yes no 0.857 0.778 0.249 2e-22
Q2VPK5515 Cytoplasmic tRNA 2-thiola yes no 0.865 0.765 0.257 3e-22
Q6DC53501 Cytoplasmic tRNA 2-thiola yes no 0.630 0.572 0.257 8e-21
Q08B12512 Cytoplasmic tRNA 2-thiola N/A no 0.879 0.781 0.225 5e-18
Q17JB7445 Cytoplasmic tRNA 2-thiola N/A no 0.771 0.788 0.25 3e-17
Q32NV1512 Cytoplasmic tRNA 2-thiola N/A no 0.821 0.730 0.218 4e-17
Q28ES8516 Cytoplasmic tRNA 2-thiola yes no 0.863 0.761 0.233 2e-16
>sp|O65628|CTU2_ARATH Cytoplasmic tRNA 2-thiolation protein 2 OS=Arabidopsis thaliana GN=CTU2 PE=2 SV=3 Back     alignment and function desciption
 Score =  556 bits (1433), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 281/457 (61%), Positives = 358/457 (78%), Gaps = 5/457 (1%)

Query: 1   MACNSATGCQSGCYKNEFERDLKPATETISDS-NEQNLCVKCKANEPTP---GAGEDGKH 56
           MACNS +GC+SGCY  E +   K   + +S   N +++CVKCK N P     G  +DG+ 
Sbjct: 1   MACNS-SGCESGCYDREKDNGSKIVDDAVSGGGNHESVCVKCKCNAPMTFGDGGFDDGRF 59

Query: 57  CLDCFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDAS 116
           C DCFR+N+FGKFRLAV S+A+ITP+DNVLVAFSGG SSRV+LQFVHELQ +A KN++AS
Sbjct: 60  CADCFRNNVFGKFRLAVTSHAMITPSDNVLVAFSGGSSSRVSLQFVHELQIKALKNYEAS 119

Query: 117 KDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCS 176
           +DRSLPVFGVGV FVDETA +P  S+E+ +AI+ ++  VS LSPP K+LHV+P+ESIF S
Sbjct: 120 RDRSLPVFGVGVAFVDETAAFPALSTEMIDAIEWVRYTVSCLSPPAKDLHVVPVESIFGS 179

Query: 177 NPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVI 236
           +  D R+R  KL+DSV D TGKEDLLL L+MLSLQK A+ENGYNRL+LG CTSRIA HV+
Sbjct: 180 DSLDARDRLLKLLDSVPDDTGKEDLLLHLKMLSLQKVAAENGYNRLVLGSCTSRIASHVL 239

Query: 237 TATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQTHSGI 296
           TATVKGRGYSL ADIQ+ DARW++P+VLPLRDC+  E+  LC LD LKTVEL  ++  GI
Sbjct: 240 TATVKGRGYSLSADIQHVDARWKVPIVLPLRDCVRLEITRLCLLDGLKTVELACRSQCGI 299

Query: 297 NGLVSSFVKILQEENPSRESTIMRTAGKLTPFHFNKIPELNDSSVPLASQRRQKRFNLKP 356
           N LVSSFV +LQEENPSRE TI+RTA KLTPF+FNKIPE +DS+VP+A+QRR KRFNLK 
Sbjct: 300 NDLVSSFVALLQEENPSRECTIVRTAAKLTPFYFNKIPETDDSNVPMATQRRLKRFNLKY 359

Query: 357 NESISSESFCSLCYSPLNQSDLTSLSSHDNCKNSDIFVAACCSSCRFQIFPKDPSSMEKF 416
           + S+++E+FC +C  PLN+SD + L + +  + SD+  AACCSSCRFQI P+D SS+E+F
Sbjct: 360 DGSMTTEAFCPICNGPLNRSDSSELDTFEEGQESDVLYAACCSSCRFQILPQDGSSLEQF 419

Query: 417 YSLLPEPLVARAKHVRNGDSSLLREQIQDFLLSDSED 453
            S LP+ ++++ KH +    + LRE+I+D LL D E+
Sbjct: 420 SSFLPDHMISQVKHQKVDSQAYLREKIKDCLLLDDEE 456
Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). May act by forming a heterodimer with NCS6 that ligates sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position.
Arabidopsis thaliana (taxid: 3702)
>sp|A2ZM73|CTU2_ORYSI Cytoplasmic tRNA 2-thiolation protein 2 OS=Oryza sativa subsp. indica GN=CTU2 PE=3 SV=1 Back     alignment and function description
>sp|Q2QMW0|CTU2_ORYSJ Cytoplasmic tRNA 2-thiolation protein 2 OS=Oryza sativa subsp. japonica GN=CTU2 PE=2 SV=1 Back     alignment and function description
>sp|Q3SZG9|CTU2_BOVIN Cytoplasmic tRNA 2-thiolation protein 2 OS=Bos taurus GN=CTU2 PE=2 SV=1 Back     alignment and function description
>sp|Q2VPK5|CTU2_HUMAN Cytoplasmic tRNA 2-thiolation protein 2 OS=Homo sapiens GN=CTU2 PE=1 SV=1 Back     alignment and function description
>sp|Q6DC53|CTU2_DANRE Cytoplasmic tRNA 2-thiolation protein 2 OS=Danio rerio GN=ctu2 PE=2 SV=1 Back     alignment and function description
>sp|Q08B12|CTU2A_XENLA Cytoplasmic tRNA 2-thiolation protein 2 A OS=Xenopus laevis GN=ctu2-a PE=2 SV=1 Back     alignment and function description
>sp|Q17JB7|CTU2_AEDAE Cytoplasmic tRNA 2-thiolation protein 2 OS=Aedes aegypti GN=AAEL002056 PE=3 SV=1 Back     alignment and function description
>sp|Q32NV1|CTU2B_XENLA Cytoplasmic tRNA 2-thiolation protein 2 B OS=Xenopus laevis GN=ctu2-b PE=2 SV=2 Back     alignment and function description
>sp|Q28ES8|CTU2_XENTR Cytoplasmic tRNA 2-thiolation protein 2 OS=Xenopus tropicalis GN=ctu2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query455
225441840468 PREDICTED: cytoplasmic tRNA 2-thiolation 0.986 0.959 0.657 1e-172
356504783458 PREDICTED: cytoplasmic tRNA 2-thiolation 0.997 0.991 0.653 1e-171
224087018443 predicted protein [Populus trichocarpa] 0.962 0.988 0.660 1e-160
449437670469 PREDICTED: cytoplasmic tRNA 2-thiolation 0.984 0.955 0.605 1e-159
18419746458 cytoplasmic tRNA 2-thiolation protein 2 0.993 0.986 0.614 1e-156
51970016458 unnamed protein product [Arabidopsis tha 0.993 0.986 0.612 1e-155
21553405458 unknown [Arabidopsis thaliana] 0.993 0.986 0.612 1e-155
297798326459 hypothetical protein ARALYDRAFT_328161 [ 0.993 0.984 0.604 1e-154
3036795527 putative protein [Arabidopsis thaliana] 0.986 0.851 0.576 1e-147
356570474389 PREDICTED: LOW QUALITY PROTEIN: cytoplas 0.846 0.989 0.647 1e-145
>gi|225441840|ref|XP_002278289.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Vitis vinifera] gi|297739656|emb|CBI29838.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 309/470 (65%), Positives = 364/470 (77%), Gaps = 21/470 (4%)

Query: 1   MACNSATGCQSGCYKNE----FERDLKPATETISDS------NEQNLCVKCKANEPTPGA 50
           MAC  A  CQSGC++++         K    T+S        N  NLC+KCK NE    +
Sbjct: 1   MAC-GAGNCQSGCFRDDDDSVVTEKKKLTNRTLSSGSDIDLPNHHNLCLKCKVNETLASS 59

Query: 51  G------EDGKHCLDCFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHE 104
           G      + G+ C DCFR NLFGKF+LAV SNA+I+P DNVLVAFSGGPSSRVALQFVHE
Sbjct: 60  GTVSVDGDIGRFCFDCFRGNLFGKFKLAVTSNAMISPTDNVLVAFSGGPSSRVALQFVHE 119

Query: 105 LQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKE 164
           +Q +AQKNFDAS+DRSLPVFGVGV FVDE+A   +PS E D AIQ++K IVSNL+PP K 
Sbjct: 120 MQHKAQKNFDASRDRSLPVFGVGVAFVDESAVSRIPSDEFDKAIQDMKSIVSNLAPPDKA 179

Query: 165 LHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLL 224
            HV+PIES++ SN   GR+R ++L+++V D TGKEDLL  LRMLSLQK A ENGY +LLL
Sbjct: 180 FHVVPIESVYSSN---GRDRLEELLNAVKDVTGKEDLLQHLRMLSLQKNAYENGYTKLLL 236

Query: 225 GLCTSRIACHVITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLK 284
           G CTSRIACHVI+ATVKG+GYSLPADIQY DARWEIPVVLPLRDCLAQELNMLC+LD LK
Sbjct: 237 GSCTSRIACHVISATVKGQGYSLPADIQYVDARWEIPVVLPLRDCLAQELNMLCRLDGLK 296

Query: 285 TVELLNQTHSGINGLVSSFVKILQEENPSRESTIMRTAGKLTPFHFNKIPELNDSSVPLA 344
           T+E+LN  HSGINGLV+SFV +LQEENPSRE TI+RTAGKLTPFHFN+IPE +DS+V LA
Sbjct: 297 TMEVLNSPHSGINGLVASFVTLLQEENPSRECTIVRTAGKLTPFHFNQIPESDDSNVHLA 356

Query: 345 SQRRQKRFNLKPNESISSESFCSLCYSPLNQSDLTSLSS-HDNCKNSDIFVAACCSSCRF 403
           S+RRQK+FNLKPNES+  ES+C +C SPL++SD  +LSS   +  N+DIF A CC SC+F
Sbjct: 357 SRRRQKKFNLKPNESVPPESYCPICNSPLSKSDHINLSSLGSDQTNADIFGATCCPSCQF 416

Query: 404 QIFPKDPSSMEKFYSLLPEPLVARAKHVRNGDSSLLREQIQDFLLSDSED 453
           QI PK+P SME FYSLLP+  V +AK         LREQIQDFLLSDSED
Sbjct: 417 QILPKEPVSMEHFYSLLPQQFVVQAKDRSFSMQRQLREQIQDFLLSDSED 466

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356504783|ref|XP_003521174.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|224087018|ref|XP_002308030.1| predicted protein [Populus trichocarpa] gi|222854006|gb|EEE91553.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449437670|ref|XP_004136614.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|18419746|ref|NP_567993.1| cytoplasmic tRNA 2-thiolation protein 2 [Arabidopsis thaliana] gi|332278212|sp|O65628.3|CTU2_ARATH RecName: Full=Cytoplasmic tRNA 2-thiolation protein 2 gi|115646788|gb|ABJ17118.1| At4g35910 [Arabidopsis thaliana] gi|332661188|gb|AEE86588.1| cytoplasmic tRNA 2-thiolation protein 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|51970016|dbj|BAD43700.1| unnamed protein product [Arabidopsis thaliana] gi|62318837|dbj|BAD93893.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21553405|gb|AAM62498.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297798326|ref|XP_002867047.1| hypothetical protein ARALYDRAFT_328161 [Arabidopsis lyrata subsp. lyrata] gi|297312883|gb|EFH43306.1| hypothetical protein ARALYDRAFT_328161 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|3036795|emb|CAA18485.1| putative protein [Arabidopsis thaliana] gi|3805857|emb|CAA21477.1| putative protein [Arabidopsis thaliana] gi|7270543|emb|CAB81500.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356570474|ref|XP_003553411.1| PREDICTED: LOW QUALITY PROTEIN: cytoplasmic tRNA 2-thiolation protein 2-like, partial [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query455
TAIR|locus:2125359458 AT4G35910 "AT4G35910" [Arabido 0.993 0.986 0.601 5.1e-145
UNIPROTKB|Q3SZG9501 CTU2 "Cytoplasmic tRNA 2-thiol 0.564 0.512 0.25 5.7e-21
UNIPROTKB|F1MJ97501 CTU2 "Cytoplasmic tRNA 2-thiol 0.564 0.512 0.25 1.6e-20
UNIPROTKB|Q2VPK5515 CTU2 "Cytoplasmic tRNA 2-thiol 0.338 0.299 0.331 2.9e-20
UNIPROTKB|F1PHC8431 CTU2 "Uncharacterized protein" 0.285 0.301 0.333 3.5e-20
UNIPROTKB|J9NS19421 CTU2 "Uncharacterized protein" 0.285 0.308 0.333 5.1e-20
UNIPROTKB|F1PHC9510 CTU2 "Uncharacterized protein" 0.285 0.254 0.333 6.7e-20
RGD|1562594528 Ctu2 "cytosolic thiouridylase 0.338 0.291 0.313 1.4e-19
MGI|MGI:1914215514 Ctu2 "cytosolic thiouridylase 0.338 0.299 0.308 3.1e-19
ZFIN|ZDB-GENE-040801-79501 ctu2 "cytosolic thiouridylase 0.470 0.427 0.264 9.8e-19
TAIR|locus:2125359 AT4G35910 "AT4G35910" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1417 (503.9 bits), Expect = 5.1e-145, P = 5.1e-145
 Identities = 275/457 (60%), Positives = 351/457 (76%)

Query:     1 MACNSATGCQSGCYKNEFERDLKPATETISDS-NEQNLCVKCKANEP-TPGAG--EDGKH 56
             MACNS+ GC+SGCY  E +   K   + +S   N +++CVKCK N P T G G  +DG+ 
Sbjct:     1 MACNSS-GCESGCYDREKDNGSKIVDDAVSGGGNHESVCVKCKCNAPMTFGDGGFDDGRF 59

Query:    57 CLDCFRSNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDAS 116
             C DCFR+N+FGKFRLAV S+A+ITP+DNVLVAFSGG SSRV+LQFVHELQ +A KN++AS
Sbjct:    60 CADCFRNNVFGKFRLAVTSHAMITPSDNVLVAFSGGSSSRVSLQFVHELQIKALKNYEAS 119

Query:   117 KDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCS 176
             +DRSLPVFGVGV FVDETA +P  S+E+ +AI+ ++  VS LSPP K+LHV+P+ESIF S
Sbjct:   120 RDRSLPVFGVGVAFVDETAAFPALSTEMIDAIEWVRYTVSCLSPPAKDLHVVPVESIFGS 179

Query:   177 NPCDGRERFKKLVDSVSDATGKEDXXXXXXXXXXQKFASENGYNRLLLGLCTSRIACHVI 236
             +  D R+R  KL+DSV D TGKED          QK A+ENGYNRL+LG CTSRIA HV+
Sbjct:   180 DSLDARDRLLKLLDSVPDDTGKEDLLLHLKMLSLQKVAAENGYNRLVLGSCTSRIASHVL 239

Query:   237 TATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQTHSGI 296
             TATVKGRGYSL ADIQ+ DARW++P+VLPLRDC+  E+  LC LD LKTVEL  ++  GI
Sbjct:   240 TATVKGRGYSLSADIQHVDARWKVPIVLPLRDCVRLEITRLCLLDGLKTVELACRSQCGI 299

Query:   297 NGLVSSFVKILQEENPSRESTIMRTAGKLTPFHFNKIPELNDSSVPLASQRRQKRFNLKP 356
             N LVSSFV +LQEENPSRE TI+RTA KLTPF+FNKIPE +DS+VP+A+QRR KRFNLK 
Sbjct:   300 NDLVSSFVALLQEENPSRECTIVRTAAKLTPFYFNKIPETDDSNVPMATQRRLKRFNLKY 359

Query:   357 NESISSESFCSLCYSPLNQSDLTSLSSHDNCKNSDIFVAACCSSCRFQIFPKDPSSMEKF 416
             + S+++E+FC +C  PLN+SD + L + +  + SD+  AACCSSCRFQI P+D SS+E+F
Sbjct:   360 DGSMTTEAFCPICNGPLNRSDSSELDTFEEGQESDVLYAACCSSCRFQILPQDGSSLEQF 419

Query:   417 YSLLPEPLVARAKHVRNGDSSLLREQIQDFLLSDSED 453
              S LP+ ++++ KH +    + LRE+I+D LL D E+
Sbjct:   420 SSFLPDHMISQVKHQKVDSQAYLREKIKDCLLLDDEE 456
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|Q3SZG9 CTU2 "Cytoplasmic tRNA 2-thiolation protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1MJ97 CTU2 "Cytoplasmic tRNA 2-thiolation protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q2VPK5 CTU2 "Cytoplasmic tRNA 2-thiolation protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PHC8 CTU2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NS19 CTU2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PHC9 CTU2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1562594 Ctu2 "cytosolic thiouridylase subunit 2 homolog (S. pombe)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1914215 Ctu2 "cytosolic thiouridylase subunit 2 homolog (S. pombe)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040801-79 ctu2 "cytosolic thiouridylase subunit 2 homolog (S. pombe)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2QMW0CTU2_ORYSJNo assigned EC number0.50710.90980.8922yesno
O65628CTU2_ARATHNo assigned EC number0.61480.99340.9868yesno
A2ZM73CTU2_ORYSINo assigned EC number0.50710.90980.8922N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00025600001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (468 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00015541001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (364 aa)
     •  0.800

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query455
pfam10288104 pfam10288, DUF2392, Protein of unknown function (D 1e-29
>gnl|CDD|220676 pfam10288, DUF2392, Protein of unknown function (DUF2392) Back     alignment and domain information 
 Score =  110 bits (278), Expect = 1e-29
 Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 11/105 (10%)

Query: 231 IACHVITATVKGRGYSLPADIQYADAR-WEIPVVLPLRDCLAQELNMLCQLDCLKTVE-- 287
           +A  +++ T KGRG S+P D+   D+R  +I ++ PLRD L +E+   C L  L  +   
Sbjct: 1   LAAKLLSLTAKGRGSSIPWDVSDGDSRGNDIKILRPLRDLLLKEIEAYCSLKNLPPLLIN 60

Query: 288 -------LLNQTHSGINGLVSSFVKILQEENPSRESTIMRTAGKL 325
                   L++  S IN L   +   LQE  PS  ST++RT  KL
Sbjct: 61  SLIQIASKLSKNMS-INELTEQYFDNLQENYPSTVSTVVRTGDKL 104

This is a family of proteins conserved from plants to humans. The function is not known. It carries a characteristic GRG sequence motif. Length = 104

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 455
KOG2594396 consensus Uncharacterized conserved protein [Funct 100.0
PRK10696258 tRNA 2-thiocytidine biosynthesis protein TtcA; Pro 100.0
PF01171182 ATP_bind_3: PP-loop family; InterPro: IPR011063 Th 100.0
COG0037298 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle 100.0
PRK10660436 tilS tRNA(Ile)-lysidine synthetase; Provisional 99.97
TIGR02432189 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t 99.95
cd01993185 Alpha_ANH_like_II This is a subfamily of Adenine n 99.95
cd01992185 PP-ATPase N-terminal domain of predicted ATPase of 99.94
KOG2840347 consensus Uncharacterized conserved protein with s 99.93
PF10288107 DUF2392: Protein of unknown function (DUF2392); In 99.88
PRK08349198 hypothetical protein; Validated 99.86
PRK00143346 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed 99.85
cd01997295 GMP_synthase_C The C-terminal domain of GMP synthe 99.82
TIGR00884311 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C 99.82
PRK00074511 guaA GMP synthase; Reviewed 99.81
cd01712177 ThiI ThiI is required for thiazole synthesis in th 99.8
cd01998349 tRNA_Me_trans tRNA methyl transferase. This family 99.79
PRK00919307 GMP synthase subunit B; Validated 99.77
PRK14665360 mnmA tRNA-specific 2-thiouridylase MnmA; Provision 99.77
cd01990202 Alpha_ANH_like_I This is a subfamily of Adenine nu 99.76
PRK08384381 thiamine biosynthesis protein ThiI; Provisional 99.75
cd01713173 PAPS_reductase This domain is found in phosphoaden 99.72
PRK14664362 tRNA-specific 2-thiouridylase MnmA; Provisional 99.72
TIGR00342371 thiazole biosynthesis/tRNA modification protein Th 99.71
TIGR00420352 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-me 99.71
PRK14561194 hypothetical protein; Provisional 99.71
TIGR00268252 conserved hypothetical protein TIGR00268. The N-te 99.71
PRK01269482 tRNA s(4)U8 sulfurtransferase; Provisional 99.69
TIGR00552250 nadE NAD+ synthetase. NAD+ synthetase is a nearly 99.67
PRK05253301 sulfate adenylyltransferase subunit 2; Provisional 99.67
PRK13820394 argininosuccinate synthase; Provisional 99.65
cd01995169 ExsB ExsB is a transcription regulator related pro 99.6
PRK08576438 hypothetical protein; Provisional 99.59
cd01986103 Alpha_ANH_like Adenine nucleotide alpha hydrolases 99.57
PRK01565394 thiamine biosynthesis protein ThiI; Provisional 99.56
TIGR02039294 CysD sulfate adenylyltransferase, small subunit. I 99.55
TIGR00032394 argG argininosuccinate synthase. argG in bacteria, 99.53
TIGR00364201 exsB protein. This protein family is represented b 99.53
PRK02090241 phosphoadenosine phosphosulfate reductase; Provisi 99.49
PF03054356 tRNA_Me_trans: tRNA methyl transferase; InterPro: 99.46
cd00553248 NAD_synthase NAD+ synthase is a homodimer, which c 99.45
PRK00509399 argininosuccinate synthase; Provisional 99.45
COG0482356 TrmU Predicted tRNA(5-methylaminomethyl-2-thiourid 99.45
PF02568197 ThiI: Thiamine biosynthesis protein (ThiI); InterP 99.44
PRK13980265 NAD synthetase; Provisional 99.43
PLN02347536 GMP synthetase 99.41
COG0519315 GuaA GMP synthase, PP-ATPase domain/subunit [Nucle 99.41
TIGR03573343 WbuX N-acetyl sugar amidotransferase. This enzyme 99.36
PLN00200404 argininosuccinate synthase; Provisional 99.34
COG1606269 ATP-utilizing enzymes of the PP-loop superfamily [ 99.33
cd01999385 Argininosuccinate_Synthase Argininosuccinate synth 99.32
PRK12563312 sulfate adenylyltransferase subunit 2; Provisional 99.29
PRK04527400 argininosuccinate synthase; Provisional 99.29
cd01996154 Alpha_ANH_like_III This is a subfamily of Adenine 99.27
PRK11106231 queuosine biosynthesis protein QueC; Provisional 99.16
TIGR00269104 conserved hypothetical protein TIGR00269. 99.09
COG0301383 ThiI Thiamine biosynthesis ATP pyrophosphatase [Co 99.08
PF06508209 QueC: Queuosine biosynthesis protein QueC; InterPr 99.02
PF01507174 PAPS_reduct: Phosphoadenosine phosphosulfate reduc 99.0
PRK05370447 argininosuccinate synthase; Validated 98.98
PRK02628679 nadE NAD synthetase; Reviewed 98.95
PF02540242 NAD_synthase: NAD synthase; InterPro: IPR022310 NA 98.94
cd01994194 Alpha_ANH_like_IV This is a subfamily of Adenine n 98.91
TIGR02057226 PAPS_reductase phosphoadenosine phosphosulfate red 98.88
KOG2805377 consensus tRNA (5-methylaminomethyl-2-thiouridylat 98.76
cd0198486 AANH_like Adenine nucleotide alpha hydrolases supe 98.76
TIGR00434212 cysH phosophoadenylyl-sulfate reductase (thioredox 98.75
PTZ00323294 NAD+ synthase; Provisional 98.75
PRK13795636 hypothetical protein; Provisional 98.74
PRK08557417 hypothetical protein; Provisional 98.74
COG0137403 ArgG Argininosuccinate synthase [Amino acid transp 98.68
PRK13794479 hypothetical protein; Provisional 98.64
TIGR03679218 arCOG00187 arCOG00187 universal archaeal metal-bin 98.59
PRK00876326 nadE NAD synthetase; Reviewed 98.57
COG0175261 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotr 98.52
PF00764388 Arginosuc_synth: Arginosuccinate synthase; InterPr 98.45
COG0603222 Predicted PP-loop superfamily ATPase [General func 98.42
PRK13981540 NAD synthetase; Provisional 98.4
COG2117198 Predicted subunit of tRNA(5-methylaminomethyl-2-th 98.34
cd01991269 Asn_Synthase_B_C The C-terminal domain of Asparagi 98.27
PRK00768268 nadE NAD synthetase; Reviewed 98.25
KOG1622552 consensus GMP synthase [Nucleotide transport and m 98.19
TIGR03183447 DNA_S_dndC putative sulfurtransferase DndC. Member 98.15
PRK06850 507 hypothetical protein; Provisional 98.01
TIGR01536467 asn_synth_AEB asparagine synthase (glutamine-hydro 98.01
PF00733255 Asn_synthase: Asparagine synthase; InterPro: IPR00 98.0
COG0171268 NadE NAD synthase [Coenzyme metabolism] 97.81
TIGR02055191 APS_reductase thioredoxin-dependent adenylylsulfat 97.66
TIGR00289222 conserved hypothetical protein TIGR00289. Homologo 97.65
TIGR00424463 APS_reduc 5'-adenylylsulfate reductase, thioredoxi 97.5
COG3969407 Predicted phosphoadenosine phosphosulfate sulfotra 97.47
KOG1706412 consensus Argininosuccinate synthase [Amino acid t 97.4
PLN02309457 5'-adenylylsulfate reductase 97.35
COG1365255 Predicted ATPase (PP-loop superfamily) [General fu 97.04
PLN02549578 asparagine synthase (glutamine-hydrolyzing) 96.82
TIGR00290223 MJ0570_dom MJ0570-related uncharacterized domain. 96.8
cd01987124 USP_OKCHK USP domain is located between the N-term 96.74
PLN02339700 NAD+ synthase (glutamine-hydrolysing) 96.56
PF01902218 ATP_bind_4: ATP-binding region; InterPro: IPR00276 96.53
PF02677176 DUF208: Uncharacterized BCR, COG1636; InterPro: IP 96.25
PRK10490 895 sensor protein KdpD; Provisional 96.23
PTZ00077586 asparagine synthetase-like protein; Provisional 96.13
PRK09431554 asnB asparagine synthetase B; Provisional 96.02
TIGR03104589 trio_amidotrans asparagine synthase family amidotr 95.41
COG0367542 AsnB Asparagine synthase (glutamine-hydrolyzing) [ 95.41
COG2102223 Predicted ATPases of PP-loop superfamily [General 95.22
TIGR03108628 eps_aminotran_1 exosortase 1 system-associated ami 95.2
PRK09982142 universal stress protein UspD; Provisional 94.95
COG2205 890 KdpD Osmosensitive K+ channel histidine kinase [Si 94.7
COG1636204 Uncharacterized protein conserved in bacteria [Fun 94.38
cd00293130 USP_Like Usp: Universal stress protein family. The 94.1
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 93.13
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 93.05
KOG0189261 consensus Phosphoadenosine phosphosulfate reductas 92.03
PRK15118144 universal stress global response regulator UspA; P 91.76
KOG0573520 consensus Asparagine synthase [Amino acid transpor 91.27
PRK15005144 universal stress protein F; Provisional 90.79
cd0556599 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of en 89.75
PF00582140 Usp: Universal stress protein family; InterPro: IP 88.27
PRK15456142 universal stress protein UspG; Provisional 85.84
PRK10116142 universal stress protein UspC; Provisional 85.3
KOG0571543 consensus Asparagine synthase (glutamine-hydrolyzi 84.92
PTZ0021854 40S ribosomal protein S29; Provisional 84.46
PRK09590104 celB cellobiose phosphotransferase system IIB comp 83.33
>KOG2594 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-46  Score=362.69  Aligned_cols=302  Identities=40%  Similarity=0.583  Sum_probs=223.9

Q ss_pred             ccccccCCCCCc-eecCCCCCCcHHHHHHHHHHHHHH--HHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhc
Q 012855           36 NLCVKCKANEPT-PGAGEDGKHCLDCFRSNLFGKFRL--AVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKN  112 (455)
Q Consensus        36 ~~C~kCk~~~av-~~~r~~~~~C~~CF~~~i~~Kfr~--~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~  112 (455)
                      ..|+||+.++.. .+..+..|||++||.+++++|||+  +....++..+.+.+|+++|||.+|+|||++++- ..++.+.
T Consensus        13 s~c~KCd~na~~~~v~~~k~~~C~eCFv~~v~~KfR~qla~~~~~~~~~sk~vLlv~~G~ssSlvlLd~vh~-~l~q~k~   91 (396)
T KOG2594|consen   13 SACVKCDKNANMTTVDGKKDAFCDECFVNNVRNKFRLQLAVPSHKMGTPSKNVLLVFDGGSSSLVLLDFVHL-ALKQLKN   91 (396)
T ss_pred             ccccccccCCCcccccccchhHHHHHHHHHHHHHHHHHhhcchhhcCCcccceEEEecCCcchHhHHHHHHH-HHHHhhh
Confidence            348888765543 344556669999999999999999  566667899999999999999999999999993 2222111


Q ss_pred             cccccCCCCCceEEEEEEEeCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCcEEE--Eeccc----------cccCCCCC
Q 012855          113 FDASKDRSLPVFGVGVVFVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTKELHV--IPIES----------IFCSNPCD  180 (455)
Q Consensus       113 ~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~~~~~~v~~~~~~l~~~~i~~~i--v~l~~----------v~~~~~~~  180 (455)
                           ++.+++|.+.|+.+-.-  ...+    ....+.+++...+.. |...|.+  +...+          ..+.....
T Consensus        92 -----~~~~~~~tv~v~~~~~~--~~~~----~~v~e~lq~l~~~~~-~~~~~~V~~la~~~~~~~~~~~~~~~~n~El~  159 (396)
T KOG2594|consen   92 -----KRLRRDFTVLVLVVFQE--FTDS----TAVFEALQELIIDNI-EWVRYVVSCLAPPEKDNHVVPVESINGNDELI  159 (396)
T ss_pred             -----hhcCcCCceEEEEEEEe--ccch----HHHHHHHHHHHHhhc-cccceEEEecCchHhhcCcccccccCCCceee
Confidence                 23345676555443211  1111    134566666666543 3334433  11111          11110000


Q ss_pred             hhHHHHHH--HhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcccchhHHHHHHHHHHhccCCCCCCcccccccCCC
Q 012855          181 GRERFKKL--VDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLGLCTSRIACHVITATVKGRGYSLPADIQYADARW  258 (455)
Q Consensus       181 ~~~~L~~l--l~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lGh~~ddlAet~L~nl~~GrG~sl~~~~~~~~~~~  258 (455)
                        .+.+.+  .++++.. +|+|+++++|.++|.++|.++||++|++||+++|+|+.+|..+++|||++++|++...+.++
T Consensus       160 --ak~~kl~~~~sv~~~-srqDLl~~lk~kll~~vA~~~g~~~i~~g~~~t~la~~vlt~v~~GRG~sis~~v~~~d~r~  236 (396)
T KOG2594|consen  160 --AKDRKLKLSDSVPDD-SRQDLLLHLKMKLLQKVAAENGYNRIVLGDSTTDLASHVLTAVVKGRGGSISTDVQVVDKRP  236 (396)
T ss_pred             --cchhhcccccccccc-hHHHHHHHHHHHHHHHHHHHcCCCEEEecCchhHHHHHHHHHHHhccCccceehhhhhcccc
Confidence              112222  2355555 48999999999999999999999999999999999999999999999999999999999987


Q ss_pred             C--cceEecCccccHHHHHHHHHHcCCCccccc-----CC--CCCcHHHHHHHHHHHHHHhCCChHHHHHHhHhhhCCCc
Q 012855          259 E--IPVVLPLRDCLAQELNMLCQLDCLKTVELL-----NQ--THSGINGLVSSFVKILQEENPSRESTIMRTAGKLTPFH  329 (455)
Q Consensus       259 ~--v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~-----~~--~~~Si~~l~~~fi~~Le~~~Pstv~tI~rT~~KL~~~~  329 (455)
                      .  ++++|||+|+.+.||..|+++.+|++....     -+  .+.||+.++..||..||.+||++++||+||+.||..+.
T Consensus       237 ~~d~~llrPLrDl~~~Ei~~y~~l~~l~~~~c~~~~k~~~~~~q~sI~~lT~afva~Lqn~f~S~vsTV~rTaaKl~~~s  316 (396)
T KOG2594|consen  237 KGDVKLLRPLRDLLSLEITSYCLLDGLAYYFCQGRRKTVELASQCSINDLTSAFVALLQNEFPSTVSTVVRTAAKLTVPS  316 (396)
T ss_pred             CCCceeehhHHHHHHHHHHHHHHhhcCCchhhhHHHhhccchhhccHHHHHHHHHHHHHhhcchHHHHHHhhhhhhcCCC
Confidence            4  999999999999999999999999964321     11  56799999999999999999999999999999999742


Q ss_pred             cCCCCCCCCCCcchhhhhhhhhccCCCCCCCCccccCcccCCCCCcccCCCcc
Q 012855          330 FNKIPELNDSSVPLASQRRQKRFNLKPNESISSESFCSLCYSPLNQSDLTSLS  382 (455)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~lC~~~ld~~~~~~~~  382 (455)
                         .+.                          .+..|++|++|++.+...++.
T Consensus       317 ---~s~--------------------------~es~C~iCn~~l~~~~s~~L~  340 (396)
T KOG2594|consen  317 ---FSM--------------------------TESFCPICNSPLNRSDSSWLD  340 (396)
T ss_pred             ---CCC--------------------------CcccccccCCcccCCchhhhh
Confidence               111                          267999999999998885443

>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional Back     alignment and domain information
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,] Back     alignment and domain information
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional Back     alignment and domain information
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only] Back     alignment and domain information
>PF10288 DUF2392: Protein of unknown function (DUF2392); InterPro: IPR019407 Cytoplasmic thiouridylase is a highly conserved complex responsible for the 2-thiolation of cytosolic tRNAs [] Back     alignment and domain information
>PRK08349 hypothetical protein; Validated Back     alignment and domain information
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed Back     alignment and domain information
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase Back     alignment and domain information
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit Back     alignment and domain information
>PRK00074 guaA GMP synthase; Reviewed Back     alignment and domain information
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway Back     alignment and domain information
>cd01998 tRNA_Me_trans tRNA methyl transferase Back     alignment and domain information
>PRK00919 GMP synthase subunit B; Validated Back     alignment and domain information
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional Back     alignment and domain information
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PRK08384 thiamine biosynthesis protein ThiI; Provisional Back     alignment and domain information
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase Back     alignment and domain information
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional Back     alignment and domain information
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI Back     alignment and domain information
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase Back     alignment and domain information
>PRK14561 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00268 conserved hypothetical protein TIGR00268 Back     alignment and domain information
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional Back     alignment and domain information
>TIGR00552 nadE NAD+ synthetase Back     alignment and domain information
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional Back     alignment and domain information
>PRK13820 argininosuccinate synthase; Provisional Back     alignment and domain information
>cd01995 ExsB ExsB is a transcription regulator related protein Back     alignment and domain information
>PRK08576 hypothetical protein; Provisional Back     alignment and domain information
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases Back     alignment and domain information
>PRK01565 thiamine biosynthesis protein ThiI; Provisional Back     alignment and domain information
>TIGR02039 CysD sulfate adenylyltransferase, small subunit Back     alignment and domain information
>TIGR00032 argG argininosuccinate synthase Back     alignment and domain information
>TIGR00364 exsB protein Back     alignment and domain information
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional Back     alignment and domain information
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 Back     alignment and domain information
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD) Back     alignment and domain information
>PRK00509 argininosuccinate synthase; Provisional Back     alignment and domain information
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell Back     alignment and domain information
>PRK13980 NAD synthetase; Provisional Back     alignment and domain information
>PLN02347 GMP synthetase Back     alignment and domain information
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR03573 WbuX N-acetyl sugar amidotransferase Back     alignment and domain information
>PLN00200 argininosuccinate synthase; Provisional Back     alignment and domain information
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only] Back     alignment and domain information
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase Back     alignment and domain information
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional Back     alignment and domain information
>PRK04527 argininosuccinate synthase; Provisional Back     alignment and domain information
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PRK11106 queuosine biosynthesis protein QueC; Provisional Back     alignment and domain information
>TIGR00269 conserved hypothetical protein TIGR00269 Back     alignment and domain information
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism] Back     alignment and domain information
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome Back     alignment and domain information
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase Back     alignment and domain information
>PRK05370 argininosuccinate synthase; Validated Back     alignment and domain information
>PRK02628 nadE NAD synthetase; Reviewed Back     alignment and domain information
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6 Back     alignment and domain information
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent Back     alignment and domain information
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) Back     alignment and domain information
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin) Back     alignment and domain information
>PTZ00323 NAD+ synthase; Provisional Back     alignment and domain information
>PRK13795 hypothetical protein; Provisional Back     alignment and domain information
>PRK08557 hypothetical protein; Provisional Back     alignment and domain information
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13794 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK00876 nadE NAD synthetase; Reviewed Back     alignment and domain information
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6 Back     alignment and domain information
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only] Back     alignment and domain information
>PRK13981 NAD synthetase; Provisional Back     alignment and domain information
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B Back     alignment and domain information
>PRK00768 nadE NAD synthetase; Reviewed Back     alignment and domain information
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC Back     alignment and domain information
>PRK06850 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing) Back     alignment and domain information
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO) Back     alignment and domain information
>COG0171 NadE NAD synthase [Coenzyme metabolism] Back     alignment and domain information
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase Back     alignment and domain information
>TIGR00289 conserved hypothetical protein TIGR00289 Back     alignment and domain information
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent Back     alignment and domain information
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only] Back     alignment and domain information
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02309 5'-adenylylsulfate reductase Back     alignment and domain information
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only] Back     alignment and domain information
>PLN02549 asparagine synthase (glutamine-hydrolyzing) Back     alignment and domain information
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>PLN02339 NAD+ synthase (glutamine-hydrolysing) Back     alignment and domain information
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal Back     alignment and domain information
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>PTZ00077 asparagine synthetase-like protein; Provisional Back     alignment and domain information
>PRK09431 asnB asparagine synthetase B; Provisional Back     alignment and domain information
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase Back     alignment and domain information
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] Back     alignment and domain information
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] Back     alignment and domain information
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1 Back     alignment and domain information
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15118 universal stress global response regulator UspA; Provisional Back     alignment and domain information
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15005 universal stress protein F; Provisional Back     alignment and domain information
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00218 40S ribosomal protein S29; Provisional Back     alignment and domain information
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query455
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1wy5_A317 TILS, hypothetical UPF0072 protein AQ_1887; N-type 2e-04
3a2k_A464 TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, 6e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 55.2 bits (132), Expect = 3e-08
 Identities = 65/492 (13%), Positives = 127/492 (25%), Gaps = 147/492 (29%)

Query: 31  DSNEQNLCVK--CKANEPTPGAGEDGKHCLDCFRSNLFGK-FRLAVASNALITPADNVLV 87
           ++ E     K      E       D K   D  +S L  +     + S   ++    +  
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69

Query: 88  AFSGGPSSRVALQFVHELQQRAQKNFD--------ASKDRSL----------PVFGVGVV 129
                    V  +FV E+ +    N+           +  S+           ++    V
Sbjct: 70  TLLSKQEEMVQ-KFVEEVLR---INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 130 FVDETAYYPVPSSEIDNAIQEIKLIVSNLSPPTK-ELH--------VIPIES-------- 172
           F      Y V   +      +++  +  L P     +          + ++         
Sbjct: 126 FAK----YNVSRLQ---PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178

Query: 173 -----IF------CSNPCDGRERFKKL---VDSVSDATGKEDLLLQLRMLSLQ----KFA 214
                IF      C++P    E  +KL   +D    +       ++LR+ S+Q    +  
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 215 SENGYNRLLLGL---CTSRIA------CHVITATVKGRGYSLPADIQYADARWEIPVVLP 265
               Y   LL L     ++        C ++  T   R   +  D   A     I +   
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT---RFKQV-TDFLSAATTTHISLD-H 293

Query: 266 LRDCLAQELNMLCQLDCLKTVELLNQTHSGINGLVSSFVKILQEENPSRESTIMRTAGKL 325
               L  +          +   LL             ++    ++ P    T        
Sbjct: 294 HSMTLTPD----------EVKSLL-----------LKYLDCRPQDLPREVLTTN------ 326

Query: 326 TPFHFNKIPELNDSSVPLASQRRQKRFNLKPNESISSESFCSLCYSPLNQSDLTSLSSHD 385
            P   + I E             +     K    I S        + L  ++   +    
Sbjct: 327 -PRRLSIIAES-IRDGLATWDNWKHVNCDKLTTIIES------SLNVLEPAEYRKM---- 374

Query: 386 NCKNSDIFVAACCSSCRFQIFPKDPSSMEKFYSLL--------PEPLVARAKHVRNGDSS 437
                  F           +FP          SL+           +V +         S
Sbjct: 375 -------FDR-------LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH-----KYS 415

Query: 438 LLREQIQDFLLS 449
           L+ +Q ++  +S
Sbjct: 416 LVEKQPKESTIS 427
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Length = 317 Back     alignment and structure
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Length = 464 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query455
3a2k_A 464 TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, 100.0
1wy5_A317 TILS, hypothetical UPF0072 protein AQ_1887; N-type 100.0
1ni5_A433 Putative cell cycle protein MESJ; structural genom 99.97
2dpl_A308 GMP synthetase, GMP synthase [glutamine-hydrolyzin 99.87
3k32_A203 Uncharacterized protein MJ0690; predicted subunit 99.82
3tqi_A527 GMP synthase [glutamine-hydrolyzing]; ligase; 2.84 99.8
2hma_A376 Probable tRNA (5-methylaminomethyl-2-thiouridylat 99.78
2ywb_A503 GMP synthase [glutamine-hydrolyzing]; GMP syntheta 99.78
1sur_A215 PAPS reductase; assimilatory sulfate reduction, 3- 99.78
2der_A380 TRNA-specific 2-thiouridylase MNMA; protein-RNA co 99.77
2c5s_A413 THII, probable thiamine biosynthesis protein THII; 99.76
3bl5_A219 Queuosine biosynthesis protein QUEC; PREQ1 biosynt 99.75
3uow_A556 GMP synthetase; structural genomics consortium, SG 99.67
2o8v_A252 Phosphoadenosine phosphosulfate reductase; disulfi 99.67
1gpm_A525 GMP synthetase, XMP aminase; class I glutamine ami 99.67
1zun_A325 Sulfate adenylyltransferase subunit 2; beta barrel 99.66
3p52_A249 NH(3)-dependent NAD(+) synthetase; structural geno 99.65
2e18_A257 NH(3)-dependent NAD(+) synthetase; ligase, structu 99.65
2pg3_A232 Queuosine biosynthesis protein QUEC; YP_049261.1, 99.64
1k92_A 455 Argininosuccinate synthase, argininosuccinate SY; 99.64
1kor_A400 Argininosuccinate synthetase; ligase, riken struct 99.62
1xng_A268 NH(3)-dependent NAD(+) synthetase; amidotransferas 99.59
2oq2_A261 Phosphoadenosine phosphosulfate reductase; sulfate 99.59
2nz2_A413 Argininosuccinate synthase; amino-acid biosynthesi 99.58
3fiu_A249 NH(3)-dependent NAD(+) synthetase; rossman fold, a 99.57
2vxo_A697 GMP synthase [glutamine-hydrolyzing]; proto-oncoge 99.55
2goy_A275 Adenosine phosphosulfate reductase; iron sulfur cl 99.47
2wsi_A306 FAD synthetase; transferase, nucleotidyltransferas 99.41
1vl2_A421 Argininosuccinate synthase; TM1780, structural gen 99.39
1vbk_A307 Hypothetical protein PH1313; structural genomics, 99.3
1kqp_A271 NAD+ synthase, NH(3)-dependent NAD(+) synthetase, 99.11
1wxi_A275 NH(3)-dependent NAD(+) synthetase; NADE, E.coli, l 99.06
3n05_A590 NH(3)-dependent NAD(+) synthetase; ligase, structu 99.04
3dpi_A285 NAD+ synthetase; ssgcid, decode, structural genomi 99.02
3q4g_A279 NH(3)-dependent NAD(+) synthetase; structural geno 98.92
3ilv_A634 Glutamine-dependent NAD(+) synthetase; protein str 98.59
3fwk_A308 FMN adenylyltransferase; FAD biosynthesis, alpha/b 98.49
3sdb_A680 Glutamine-dependent NAD(+) synthetase; glutamine-a 98.37
3rjz_A237 N-type ATP pyrophosphatase superfamily; structural 98.14
1ct9_A553 Asparagine synthetase B; amidotransferase, substra 97.88
1jgt_A513 Beta-lactam synthetase; asparagine synthetase, cla 97.65
4f4h_A565 Glutamine dependent NAD+ synthetase; structural ge 97.63
1q15_A503 CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, 97.6
3fdx_A143 Putative filament protein / universal stress PROT; 94.5
3tnj_A150 Universal stress protein (USP); structural genomic 94.43
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 94.03
3dlo_A155 Universal stress protein; unknown function, struct 93.93
3s3t_A146 Nucleotide-binding protein, universal stress PROT 92.47
2z08_A137 Universal stress protein family; uncharacterized c 92.45
3loq_A294 Universal stress protein; structural genomics, PSI 92.03
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 91.97
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 91.08
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 91.07
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 90.66
3mt0_A290 Uncharacterized protein PA1789; structural genomic 90.35
3fg9_A156 Protein of universal stress protein USPA family; A 89.93
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 88.09
3olq_A319 Universal stress protein E; structural genomics, P 86.3
1q77_A138 Hypothetical protein AQ_178; structural genomics, 85.92
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 85.92
3nbm_A108 PTS system, lactose-specific IIBC components; PTS_ 85.91
3mt0_A290 Uncharacterized protein PA1789; structural genomic 82.57
2p09_A81 A non-biological ATP binding protein with two MUT 81.71
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Back     alignment and structure
Probab=100.00  E-value=6.1e-33  Score=291.35  Aligned_cols=225  Identities=15%  Similarity=0.144  Sum_probs=185.2

Q ss_pred             HHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCchhH
Q 012855           66 FGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSSEID  145 (455)
Q Consensus        66 ~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~e~~  145 (455)
                      .+||+++|.+++++.++++|+||+|||+||+|||++|.++...             .++++.++|||||. ++.   +.+
T Consensus         2 ~~kv~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~-------------~~~~v~avhvdhgl-rg~---~s~   64 (464)
T 3a2k_A            2 IDKVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDE-------------WKLQVIAAHVDHMF-RGR---ESE   64 (464)
T ss_dssp             CSHHHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHT-------------TTCBCEEEEEECTT-CTH---HHH
T ss_pred             hHHHHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHH-------------cCCeEEEEEEECCC-Ccc---ccH
Confidence            3589999999999999999999999999999999999987431             26899999999995 431   234


Q ss_pred             HHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEcc
Q 012855          146 NAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRLLLG  225 (455)
Q Consensus       146 ~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l~lG  225 (455)
                      .+.+.++++|+++   |+++++++++..             .+..  ....+.|..++.+||.+|.++|+++|+++|++|
T Consensus        65 ~~~~~v~~~~~~l---gi~~~v~~~~~~-------------~~~~--~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~Iatg  126 (464)
T 3a2k_A           65 EEMEFVKRFCVER---RILCETAQIDVP-------------AFQR--SAGLGAQEAARICRYRFFAELMEKHQAGYVAVG  126 (464)
T ss_dssp             HHHHHHHHHHHHT---TCEEEEEECCCH-------------HHHT--TTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECC
T ss_pred             HHHHHHHHHHHHc---CCcEEEEEechh-------------hhhh--ccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEe
Confidence            5778899999998   799999887521             1111  123578999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHhccCCCCCCccccccc--CCCCcceEecCccccHHHHHHHHHHcCCCcccccCC--CCCcHHHHHH
Q 012855          226 LCTSRIACHVITATVKGRGYSLPADIQYAD--ARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQ--THSGINGLVS  301 (455)
Q Consensus       226 h~~ddlAet~L~nl~~GrG~sl~~~~~~~~--~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~~~--~~~Si~~l~~  301 (455)
                      ||.||+|||+|+++.+|.|..  ...++..  ...+..+||||++++++||..|++.+||+++.++++  .....+.++.
T Consensus       127 H~~dD~aEt~L~~l~rG~g~~--gL~gm~~~~~~~~~~iiRPLl~~~k~eI~~ya~~~gl~~~~d~sn~~~~~~Rn~iR~  204 (464)
T 3a2k_A          127 HHGDDQVETILMRLVRGSTSK--GYAGIPVKRPFHGGYLIRPFLAVSRAEIEAYCRQMGLSPRCDPSNEKDDYTRNRFRH  204 (464)
T ss_dssp             CCHHHHHHHHHHHHHHCCCSS--STTCSCSEEECSSSEEECGGGGSCHHHHHHHHHHTCCSSCSCTTCCCTTSHHHHHHH
T ss_pred             CChHHHHHHHHHHHHcCCCcc--cccCCCccccCCCCEEECCCccCcHHHHHHHHHHcCCCeEECCCCCCccchHHHHHH
Confidence            999999999999999999843  2222211  112468999999999999999999999999986654  3456677778


Q ss_pred             HHHHHHHHhCCChHHHHHHhHhhhCC
Q 012855          302 SFVKILQEENPSRESTIMRTAGKLTP  327 (455)
Q Consensus       302 ~fi~~Le~~~Pstv~tI~rT~~KL~~  327 (455)
                      ++++.|++.||+++.+++|+++++..
T Consensus       205 ~~lp~L~~~~p~~~~~l~r~a~~~~~  230 (464)
T 3a2k_A          205 HIVPLLRQENPRLHERFQQYSEMMAE  230 (464)
T ss_dssp             THHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCchHHHHHHHHHHHHHH
Confidence            89999999999999999999998874
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Back     alignment and structure
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1 Back     alignment and structure
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A Back     alignment and structure
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii} Back     alignment and structure
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} Back     alignment and structure
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae} Back     alignment and structure
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* Back     alignment and structure
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2 Back     alignment and structure
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A* Back     alignment and structure
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1 Back     alignment and structure
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis} Back     alignment and structure
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} Back     alignment and structure
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Back     alignment and structure
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 Back     alignment and structure
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2 Back     alignment and structure
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0 Back     alignment and structure
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii} Back     alignment and structure
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1 Back     alignment and structure
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A* Back     alignment and structure
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A* Back     alignment and structure
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A Back     alignment and structure
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae} Back     alignment and structure
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens} Back     alignment and structure
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp} Back     alignment and structure
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Back     alignment and structure
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa} Back     alignment and structure
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1 Back     alignment and structure
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1 Back     alignment and structure
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A Back     alignment and structure
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A* Back     alignment and structure
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Back     alignment and structure
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0 Back     alignment and structure
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0 Back     alignment and structure
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A* Back     alignment and structure
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Back     alignment and structure
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A Back     alignment and structure
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1 Back     alignment and structure
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A* Back     alignment and structure
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Back     alignment and structure
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A* Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae} Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>2p09_A A non-biological ATP binding protein with two MUT N32D and D65V; alpha/beta fold, de novo protein; HET: ATP 1PE; 1.65A {Unidentified} PDB: 3dgl_A* 3dgm_A* 3dgn_A* 3ltb_A* 3ltc_A* 3ltd_A* 3dgo_A* 3lta_A* 3lt8_A* 3lt9_A* 2p05_A* 1uw1_A* 2p0x_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query455
d1wy5a1216 TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId 100.0
d1ni5a1227 tRNA-Ile-lysidine synthetase, TilS, N-terminal dom 99.97
d2c5sa1218 Thiamine biosynthesis protein ThiI, C-terminal dom 99.84
d1k92a1188 Argininosuccinate synthetase, N-terminal domain {E 99.55
d1vl2a1168 Argininosuccinate synthetase, N-terminal domain {T 99.48
d1gpma1197 GMP synthetase, central domain {Escherichia coli [ 99.46
d1j20a1165 Argininosuccinate synthetase, N-terminal domain {T 99.29
d1sura_215 Phosphoadenylyl sulphate (PAPS) reductase {Escheri 99.22
d1zuna1211 Sulfate adenylyltransferase subunit 2, CysD {Pseud 99.18
d1xnga1255 NH3-dependent NAD+-synthetase {Helicobacter pylori 98.88
d2pg3a1230 Queuosine biosynthesis protein QueC {Erwinia carot 98.88
d1vbka1132 Hypothetical protein PH1313, C-terminal domain {Ar 98.66
d1wxia1274 NH3-dependent NAD+-synthetase {Escherichia coli [T 98.2
d1kqpa_271 NH3-dependent NAD+-synthetase {Bacillus subtilis [ 98.11
d2d13a1226 Hypothetical protein PH1257 {Archaeon Pyrococcus h 97.68
d1jgta1299 beta-Lactam synthetase {Streptomyces clavuligerus 97.32
d1q15a1296 beta-Lactam synthetase {Pectobacterium carotovorum 97.22
d1ct9a1324 Asparagine synthetase B, C-terminal domain {Escher 96.89
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 94.93
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 94.04
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 91.72
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 91.55
d2gm3a1171 Putative ethylene-responsive protein AT3g01520/F4P 87.76
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 86.66
d2cuqa132 Four and a half LIM domains 3, FHL3 {Human (Homo s 84.38
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: PP-loop ATPase
domain: TilS-like protein Aq 1887
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=1.7e-33  Score=264.80  Aligned_cols=210  Identities=16%  Similarity=0.138  Sum_probs=169.1

Q ss_pred             HHHHHHHHHHHhhccCCCCCCEEEEEecCCccHHHHHHHHHHHHHHHhhccccccCCCCCceEEEEEEEeCCCCCCCCCc
Q 012855           63 SNLFGKFRLAVASNALITPADNVLVAFSGGPSSRVALQFVHELQQRAQKNFDASKDRSLPVFGVGVVFVDETAYYPVPSS  142 (455)
Q Consensus        63 ~~i~~Kfr~~i~~~~li~~g~kVLValSGG~dS~vLL~lL~~l~~~~~~~~~~~~~r~~~~f~l~vv~VD~~~~~~~s~~  142 (455)
                      ..+.+|+.+.+..++++.+++||+||+|||+||++|||+|.++...            .....+.++|||||. ++.   
T Consensus         5 ~~~~~k~~~~~~~~~l~~~~~kv~Va~SGG~DS~~Ll~lL~~~~~~------------~~~~~i~~~~vdh~~-r~~---   68 (216)
T d1wy5a1           5 SRVIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNY------------FSLKEVALAHFNHML-RES---   68 (216)
T ss_dssp             HHHHHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTT------------TTCSEEEEEEEECCS-STH---
T ss_pred             HHHHHHHHHHHHHHhccCCCCeEEEEeCCcHHHHHHHHHHHHHHHh------------cCCCcEEEEEeeccc-ccc---
Confidence            4578888888899999999999999999999999999999876220            112378999999995 543   


Q ss_pred             hhHHHHHHHHHHHHhhCCCCCcEEEEeccccccCCCCChhHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCcEE
Q 012855          143 EIDNAIQEIKLIVSNLSPPTKELHVIPIESIFCSNPCDGRERFKKLVDSVSDATGKEDLLLQLRMLSLQKFASENGYNRL  222 (455)
Q Consensus       143 e~~~~~~~v~~~~~~l~~~~i~~~iv~l~~v~~~~~~~~~~~L~~ll~~~~s~tsred~~~~lRr~lL~~~A~~~g~~~l  222 (455)
                       .+.+.+.++++|+++   |+++++..++...             . . .....+.|..+|.+||.+|.++|+++|+++|
T Consensus        69 -s~~~~~~~~~~~~~l---~i~~~i~~~~~~~-------------~-~-~~~~~~~~~~~R~~Ry~~l~~~a~~~~~~~i  129 (216)
T d1wy5a1          69 -AERDEEFCKEFAKER---NMKIFVGKEDVRA-------------F-A-KENRMSLEEAGRFLRYKFLKEILESEGFDCI  129 (216)
T ss_dssp             -HHHHHHHHHHHHHHH---TCCEEEEECCHHH-------------H-H-HHTTCCHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred             -hhhhhhHHHHHHHhh---hhhhhhhccchhh-------------h-c-cCCccchHHHHHHHHHHHhhhhcccccccee
Confidence             245678899999998   7999988764211             0 0 1134678999999999999999999999999


Q ss_pred             EcccchhHHHHHHHHHHhccCCCCCCcccccccCCCCcceEecCccccHHHHHHHHHHcCCCcccccCC--CCCcHHHHH
Q 012855          223 LLGLCTSRIACHVITATVKGRGYSLPADIQYADARWEIPVVLPLRDCLAQELNMLCQLDCLKTVELLNQ--THSGINGLV  300 (455)
Q Consensus       223 ~lGh~~ddlAet~L~nl~~GrG~sl~~~~~~~~~~~~v~iiRPLrdl~~kEI~~Y~~~~~L~~~~~~~~--~~~Si~~l~  300 (455)
                      ++|||+||++||+|+++.+|.|.  .+..++.  .....++|||+.++++||..||+.+||||++++++  ...+.+.++
T Consensus       130 a~GH~~dD~~Et~l~~l~rg~~~--~~l~~~~--~~~~~i~RPLl~~~k~eI~~~a~~~~l~~~~D~sN~~~~~~Rn~iR  205 (216)
T d1wy5a1         130 ATAHHLNDLLETSLLFFTRGTGL--DGLIGFL--PKEEVIRRPLYYVKRSEIEEYAKFKGLRWVEDETNYEVSIPRNRIR  205 (216)
T ss_dssp             ECCCCHHHHHHHHHHHHHHCCCH--HHHHCSC--SEETTEECTTTTCCHHHHHHHHHHTTCCCCCCGGGGTCCHHHHHHH
T ss_pred             EeeeeccchHHHHHHHhhcCCcc--ccccCCC--cccceecchhhcCCHHHHHHHHHHcCCcEEECcCCCCCcccHHHHH
Confidence            99999999999999999999873  3444331  23467899999999999999999999999987765  334566777


Q ss_pred             HHHHHHHHHhC
Q 012855          301 SSFVKILQEEN  311 (455)
Q Consensus       301 ~~fi~~Le~~~  311 (455)
                      +++|+.|++.|
T Consensus       206 ~~l~p~l~~~n  216 (216)
T d1wy5a1         206 HRVIPELKRIN  216 (216)
T ss_dssp             HTHHHHHHHHC
T ss_pred             HHHHHHHHhcC
Confidence            78999998754
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sura_ c.26.2.2 (A:) Phosphoadenylyl sulphate (PAPS) reductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2, CysD {Pseudomonas syringae pv. tomato [TaxId: 323]} Back     information, alignment and structure
>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]} Back     information, alignment and structure
>d1vbka1 c.26.2.6 (A:176-307) Hypothetical protein PH1313, C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1jgta1 c.26.2.1 (A:210-508) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]} Back     information, alignment and structure
>d1ct9a1 c.26.2.1 (A:193-516) Asparagine synthetase B, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure